Table of Contents

July 2024; 30 (7)

Bioinformatics and Databases

  • Computational analysis of super-resolved in situ sequencing data reveals genes modified by immune–tumor contact events

    • Michal Danino-Levi,
    • Tal Goldberg,
    • Maya Keter,
    • Nikol Akselrod,
    • Noa Shprach-Buaron,
    • Modi Safra,
    • Gonen Singer,
    • and Shahar Alon
    RNA July 2024 30: 749-759; Published in Advance April 4, 2024, doi:10.1261/rna.079801.123
    OPEN ACCESS ARTICLE

  • Robo-Therm, a pipeline to RNA thermometer discovery and validation

    • Davis M. Sharts,
    • Maria T. Almanza,
    • Andrea V. Banks,
    • Alyssa M. Castellanos,
    • Catherine G.O. Hernandez,
    • Monica L. Lopez,
    • Daniela Rodriguez,
    • Alina Y. Tong,
    • Maximilian R. Segeberg,
    • Luiz F.M. Passalacqua,
    • and Michael M. Abdelsayed
    RNA July 2024 30: 760-769; Published in Advance April 2, 2024, doi:10.1261/rna.079980.124
    OPEN ACCESS ARTICLE

RNA and Gene Expression

  • Contribution of an alternative 16S rRNA helix to biogenesis of the 30S subunit of the ribosome

    • Benjamin R. Warner and
    • Kurt Fredrick
    RNA July 2024 30: 770-778; Published in Advance April 3, 2024, doi:10.1261/rna.079960.124
    OPEN ACCESS ARTICLE

  • NMR characterization and ligand binding site of the stem–loop 2 motif from the Delta variant of SARS-CoV-2

    • Tobias Matzel,
    • Maria Wirtz Martin,
    • Alexander Herr,
    • Anna Wacker,
    • Christian Richter,
    • Sridhar Sreeramulu,
    • and Harald Schwalbe
    RNA July 2024 30: 779-794; Published in Advance April 2, 2024, doi:10.1261/rna.079902.123
    OPEN ACCESS ARTICLE

  • Molecular basis of human poly(A) polymerase recruitment by mPSF

    • Sofia Todesca,
    • Felix Sandmeir,
    • Achim Keidel,
    • and Elena Conti
    RNA July 2024 30: 795-806; Published in Advance March 27, 2024, doi:10.1261/rna.079915.123
    OPEN ACCESS ARTICLE

  • The novel pre-rRNA detection workflow “Riboprobing” allows simple identification of undescribed RNA species

    • Magdalena Gerhalter,
    • Lisa Kofler,
    • Gertrude Zisser,
    • Juliane Merl-Pham,
    • Stefanie M. Hauck,
    • and Helmut Bergler
    RNA July 2024 30: 807-823; Published in Advance April 5, 2024, doi:10.1261/rna.079912.123
    OPEN ACCESS ARTICLE

  • Inefficient recruitment of DDX39B impedes pre-spliceosome assembly on FOXP3 introns

    • Chloe K. Nagasawa,
    • Aaron O. Bailey,
    • William K. Russell,
    • and Mariano A. Garcia-Blanco
    RNA July 2024 30: 824-838; Published in Advance April 4, 2024, doi:10.1261/rna.079933.123
    OPEN ACCESS ARTICLE

  • Cytosolic RNA binding of the mitochondrial TCA cycle enzyme malate dehydrogenase

    • Michelle Noble,
    • Aindrila Chatterjee,
    • Thileepan Sekaran,
    • Thomas Schwarzl,
    • and Matthias W. Hentze
    RNA July 2024 30: 839-853; Published in Advance April 12, 2024, doi:10.1261/rna.079925.123
    OPEN ACCESS ARTICLE

  • The Prp19C/NTC subunit Syf2 and the Prp19C/NTC-associated protein Cwc15 function in TREX occupancy and transcription elongation

    • Laura Henke-Schulz,
    • Rashmi Minocha,
    • Nils Holger Maier,
    • and Katja Sträßer
    RNA July 2024 30: 854-865; Published in Advance April 16, 2024, doi:10.1261/rna.079944.124
    OPEN ACCESS ARTICLE

  • Regulation of the Drosophila transcriptome by Pumilio and the CCR4–NOT deadenylase complex

    • Rebecca J. Haugen,
    • Catherine Barnier,
    • Nathan D. Elrod,
    • Hua Luo,
    • Madeline K. Jensen,
    • Ping Ji,
    • Craig A. Smibert,
    • Howard D. Lipshitz,
    • Eric J. Wagner,
    • P. Lydia Freddolino,
    • and Aaron C. Goldstrohm
    RNA July 2024 30: 866-890; Published in Advance April 16, 2024, doi:10.1261/rna.079813.123

  • PACRAT: pathogen detection with aptamer-observed cascaded recombinase polymerase amplification–in vitro transcription

    • Pavana Khan,
    • Lauren M. Aufdembrink,
    • Katarzyna P. Adamala,
    • and Aaron E. Engelhart
    RNA July 2024 30: 891-900; Published in Advance April 18, 2024, doi:10.1261/rna.079891.123

  • A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS

    • Catherine A. Douds,
    • Paul Babitzke,
    • and Philip C. Bevilacqua
    RNA July 2024 30: 901-919; Published in Advance April 26, 2024, doi:10.1261/rna.079974.124

  • Mapping RNA–protein interactions with subcellular resolution using colocalization CLIP

    • Soon Yi,
    • Shashi S. Singh,
    • Kathryn Rozen-Gagnon,
    • and Joseph M. Luna
    RNA July 2024 30: 920-937; Published in Advance April 24, 2024, doi:10.1261/rna.079890.123
    OPEN ACCESS ARTICLE

  • Enhanced ac4C detection in RNA via chemical reduction and cDNA synthesis with modified dNTPs

    • Sebastien Relier,
    • Sarah Schiffers,
    • Hamid Beiki,
    • and Shalini Oberdoerffer
    RNA July 2024 30: 938-953; Published in Advance May 2, 2024, doi:10.1261/rna.079863.123
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This Issue

July 2024; 30 (7)
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  1. Bioinformatics and Databases
  2. RNA and Gene Expression

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