Table of Contents

BIOINFORMATICS: BENCHMARK

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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
- Sam Bryce-Smith,
- Dominik Burri,
- Matthew R. Gazzara,
- Christina J. Herrmann,
- Weronika Danecka,
- Christina M. Fitzsimmons,
- Yuk Kei Wan,
- Farica Zhuang,
- Mervin M. Fansler,
- José M. Fernández,
- Meritxell Ferret,
- Asier Gonzalez-Uriarte,
- Samuel Haynes,
- Chelsea Herdman,
- Alexander Kanitz,
- Maria Katsantoni,
- Federico Marini,
- Euan McDonnel,
- Ben Nicolet,
- Chi-Lam Poon,
- Gregor Rot,
- Leonard Schärfen,
- Pin-Jou Wu,
- Yoseop Yoon,
- Yoseph Barash,
- and Mihaela Zavolan
RNA December 2023 29: 1839-1855; Published in Advance October 10, 2023, doi:10.1261/rna.079849.123
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REPORTS

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Thioredoxin regulates the redox state and the activity of the human tRNA ligase complex
- Dhaarsini Jaksch,
- Johanna Irnstorfer,
- Petra-Franziska Kalman,
- and Javier Martinez
RNA December 2023 29: 1856-1869; Published in Advance August 30, 2023, doi:10.1261/rna.079732.123
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Cross-linking mass spectrometric analysis of the endogenous TREX complex from Saccharomyces cerevisiae
- Carina Kern,
- Christin Radon,
- Wolfgang Wende,
- Alexander Leitner,
- and Katja Sträßer
RNA December 2023 29: 1870-1880; Published in Advance September 12, 2023, doi:10.1261/rna.079758.123
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ARTICLES

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Translational control by Trypanosoma brucei DRBD18 contributes to the maintenance of the procyclic state
- Martin Ciganda,
- José Sotelo-Silveira,
- Ashutosh P. Dubey,
- Parul Pandey,
- Joseph T. Smith,
- Shichen Shen,
- Jun Qu,
- Pablo Smircich,
- and Laurie K. Read
RNA December 2023 29: 1881-1895; Published in Advance September 20, 2023, doi:10.1261/rna.079625.123
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The pseudotorsional space of RNA
- Leandro Grille,
- Diego Gallego,
- Leonardo Darré,
- Gabriela da Rosa,
- Federica Battistini,
- Modesto Orozco,
- and Pablo D. Dans
RNA December 2023 29: 1896-1909; Published in Advance October 4, 2023, doi:10.1261/rna.079821.123
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Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development
- Nozomi Ugajin,
- Koshi Imami,
- Hiraku Takada,
- Yasushi Ishihama,
- Shinobu Chiba,
- and Yuichiro Mishima
RNA December 2023 29: 1910-1927; Published in Advance September 26, 2023, doi:10.1261/rna.079633.123
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Quantification of elongation stalls and impact on gene expression in yeast
- Wanfu Hou,
- Vince Harjono,
- Alex T. Harvey,
- Arvind Rasi Subramaniam,
- and Brian M. Zid
RNA December 2023 29: 1928-1938; Published in Advance October 2, 2023, doi:10.1261/rna.079663.123
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METHODS

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Adaptive sampling for nanopore direct RNA-sequencing
- Isabel S. Naarmann-de Vries,
- Enio Gjerga,
- Catharina L.A. Gandor,
- and Christoph Dieterich
RNA December 2023 29: 1939-1949; Published in Advance September 6, 2023, doi:10.1261/rna.079727.123
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Rational design of eukaryotic riboswitches that up-regulate IRES-mediated translation initiation with high switching efficiency through a kinetic trapping mechanism in vitro
- Hajime Takahashi,
- Masahiro Fujikawa,
- and Atsushi Ogawa
RNA December 2023 29: 1950-1959; Published in Advance September 13, 2023, doi:10.1261/rna.079778.123
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A highly efficient human cell-free translation system
- Nikolay A. Aleksashin,
- Stacey Tsai-Lan Chang,
- and Jamie H.D. Cate
RNA December 2023 29: 1960-1972; Published in Advance October 4, 2023, doi:10.1261/rna.079825.123
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CORRIGENDUM

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Corrigendum: Identification of U^p47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium
- Philippe Wolff,
- Antony Lechner,
- Louis Droogmans,
- Henri Grosjean,
- and Eric Westhof
RNA December 2023 29: 1973; doi:10.1261/rna.079812.123
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REVIEWER INDEX

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RNA: Reviewers for Volume 29, 2023
RNA December 2023 29: 1974-1975

BIOINFORMATICS: BENCHMARK

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

REPORTS

Thioredoxin regulates the redox state and the activity of the human tRNA ligase complex

Cross-linking mass spectrometric analysis of the endogenous TREX complex from Saccharomyces cerevisiae

ARTICLES

Translational control by Trypanosoma brucei DRBD18 contributes to the maintenance of the procyclic state

The pseudotorsional space of RNA

Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development

Quantification of elongation stalls and impact on gene expression in yeast

METHODS

Adaptive sampling for nanopore direct RNA-sequencing

Rational design of eukaryotic riboswitches that up-regulate IRES-mediated translation initiation with high switching efficiency through a kinetic trapping mechanism in vitro

A highly efficient human cell-free translation system

CORRIGENDUM

Corrigendum: Identification of U^p47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium

REVIEWER INDEX

RNA: Reviewers for Volume 29, 2023

This Issue

Current Issue

In This Issue

Table of Contents

BIOINFORMATICS: BENCHMARK

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

REPORTS

Thioredoxin regulates the redox state and the activity of the human tRNA ligase complex

Cross-linking mass spectrometric analysis of the endogenous TREX complex from Saccharomyces cerevisiae

ARTICLES

Translational control by Trypanosoma brucei DRBD18 contributes to the maintenance of the procyclic state

The pseudotorsional space of RNA

Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development

Quantification of elongation stalls and impact on gene expression in yeast

METHODS

Adaptive sampling for nanopore direct RNA-sequencing

Rational design of eukaryotic riboswitches that up-regulate IRES-mediated translation initiation with high switching efficiency through a kinetic trapping mechanism in vitro

A highly efficient human cell-free translation system

CORRIGENDUM

Corrigendum: Identification of Up47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium

REVIEWER INDEX

RNA: Reviewers for Volume 29, 2023

This Issue

Current Issue

In This Issue

Corrigendum: Identification of U^p47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium