Table of Contents

OBITUARY

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A celebration of the life of Marie Öhman (1964–2019)
- Brenda L. Bass,
- Mary A. O'Connell,
- and E. Gerhart H. Wagner
RNA October 2019 25: ix-xi; Published in Advance July 16, 2019, doi:10.1261/rna.072645.119

BIOINFORMATICS

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tailfindr: alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing
- Maximilian Krause,
- Adnan M. Niazi,
- Kornel Labun,
- Yamila N. Torres Cleuren,
- Florian S. Müller,
- and Eivind Valen
RNA October 2019 25: 1229-1241; Published in Advance July 2, 2019, doi:10.1261/rna.071332.119
OPEN ACCESS ARTICLE
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Novel mRNAs 3′ end-associated cis-regulatory elements with epigenomic signatures of mammalian enhancers in the Arabidopsis genome
- Hsiao-Lin V. Wang and
- Julia A. Chekanova
RNA October 2019 25: 1242-1258; Published in Advance July 16, 2019, doi:10.1261/rna.071209.119
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DOT1L complex suppresses transcription from enhancer elements and ectopic RNAi in Caenorhabditis elegans
- Ruben Esse,
- Ekaterina S. Gushchanskaia,
- Avery Lord,
- and Alla Grishok
RNA October 2019 25: 1259-1273; Published in Advance July 12, 2019, doi:10.1261/rna.070292.119
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Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies
- Preethi P. Seelam,
- Abhijit Mitra,
- and Purshotam Sharma
RNA October 2019 25: 1274-1290; Published in Advance July 17, 2019, doi:10.1261/rna.071530.119

REPORT

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Sequestration of microRNA-mediated target repression by the Ago2-associated RNA-binding protein FAM120A
- Timothy J. Kelly,
- Hiroshi I. Suzuki,
- Jesse R. Zamudio,
- Megumu Suzuki,
- and Phillip A. Sharp
RNA October 2019 25: 1291-1297; Published in Advance July 9, 2019, doi:10.1261/rna.071621.119

ARTICLES

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Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae
- Isabella E. Maudlin and
- Jean D. Beggs
RNA October 2019 25: 1298-1310; Published in Advance July 9, 2019, doi:10.1261/rna.070425.119
OPEN ACCESS ARTICLE
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Sequence-specific m⁶A demethylation in RNA by FTO fused to RCas9
- Kristina Rau,
- Lukas Rösner,
- and Andrea Rentmeister
RNA October 2019 25: 1311-1323; Published in Advance July 1, 2019, doi:10.1261/rna.070706.119
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PTBP1 mRNA isoforms and regulation of their translation
- Luisa M. Arake de Tacca,
- Mia C. Pulos-Holmes,
- Stephen N. Floor,
- and Jamie H.D. Cate
RNA October 2019 25: 1324-1336; Published in Advance July 1, 2019, doi:10.1261/rna.070193.118
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Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS
- Michele Spiniello,
- Maisie I. Steinbrink,
- Anthony J. Cesnik,
- Rachel M. Miller,
- Mark Scalf,
- Michael R. Shortreed,
- and Lloyd M. Smith
RNA October 2019 25: 1337-1352; Published in Advance July 11, 2019, doi:10.1261/rna.072157.119
OPEN ACCESS ARTICLE
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Srrm234, but not canonical SR and hnRNP proteins, drive inclusion of Dscam exon 9 variable exons
- Pinar Ustaoglu,
- Irmgard U. Haussmann,
- Hongzhi Liao,
- Antonio Torres-Mendez,
- Roland Arnold,
- Manuel Irimia,
- and Matthias Soller
RNA October 2019 25: 1353-1365; Published in Advance July 10, 2019, doi:10.1261/rna.071316.119
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Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B
- Nathan W. Howell,
- Manasses Jora,
- Benjamin F. Jepson,
- Patrick A. Limbach,
- and Jane E. Jackman
RNA October 2019 25: 1366-1376; Published in Advance July 10, 2019, doi:10.1261/rna.072090.119
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Mutually exclusive amino acid residues of L13a are responsible for its ribosomal incorporation and translational silencing leading to resolution of inflammation
- Ravinder Kour,
- Anton A. Komar,
- and Barsanjit Mazumder
RNA October 2019 25: 1377-1392; Published in Advance July 15, 2019, doi:10.1261/rna.071118.119
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Base-pairing interactions between substrate RNA and H/ACA guide RNA modulate the kinetics of pseudouridylation, but not the affinity of substrate binding by H/ACA small nucleolar ribonucleoproteins
- Erin K. Kelly,
- Dominic P. Czekay,
- and Ute Kothe
RNA October 2019 25: 1393-1404; Published in Advance July 16, 2019, doi:10.1261/rna.071043.119
OPEN ACCESS ARTICLE

CORRIGENDUM

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Corrigendum: Telomeric small RNAs in the genus Caenorhabditis
- Stephen Frenk,
- Evan H. Lister-Shimauchi,
- and Shawn Ahmed
RNA October 2019 25: 1405; doi:10.1261/rna.072926.119
OPEN ACCESS ARTICLE

OBITUARY

A celebration of the life of Marie Öhman (1964–2019)

BIOINFORMATICS

tailfindr: alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing

Novel mRNAs 3′ end-associated cis-regulatory elements with epigenomic signatures of mammalian enhancers in the Arabidopsis genome

DOT1L complex suppresses transcription from enhancer elements and ectopic RNAi in Caenorhabditis elegans

Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies

REPORT

Sequestration of microRNA-mediated target repression by the Ago2-associated RNA-binding protein FAM120A

ARTICLES

Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae

Sequence-specific m⁶A demethylation in RNA by FTO fused to RCas9

PTBP1 mRNA isoforms and regulation of their translation

Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS

Srrm234, but not canonical SR and hnRNP proteins, drive inclusion of Dscam exon 9 variable exons

Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B

Mutually exclusive amino acid residues of L13a are responsible for its ribosomal incorporation and translational silencing leading to resolution of inflammation

Base-pairing interactions between substrate RNA and H/ACA guide RNA modulate the kinetics of pseudouridylation, but not the affinity of substrate binding by H/ACA small nucleolar ribonucleoproteins

CORRIGENDUM

Corrigendum: Telomeric small RNAs in the genus Caenorhabditis

This Issue

Current Issue

In This Issue

Table of Contents

OBITUARY

A celebration of the life of Marie Öhman (1964–2019)

BIOINFORMATICS

tailfindr: alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing

Novel mRNAs 3′ end-associated cis-regulatory elements with epigenomic signatures of mammalian enhancers in the Arabidopsis genome

DOT1L complex suppresses transcription from enhancer elements and ectopic RNAi in Caenorhabditis elegans

Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies

REPORT

Sequestration of microRNA-mediated target repression by the Ago2-associated RNA-binding protein FAM120A

ARTICLES

Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae

Sequence-specific m6A demethylation in RNA by FTO fused to RCas9

PTBP1 mRNA isoforms and regulation of their translation

Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS

Srrm234, but not canonical SR and hnRNP proteins, drive inclusion of Dscam exon 9 variable exons

Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B

Mutually exclusive amino acid residues of L13a are responsible for its ribosomal incorporation and translational silencing leading to resolution of inflammation

Base-pairing interactions between substrate RNA and H/ACA guide RNA modulate the kinetics of pseudouridylation, but not the affinity of substrate binding by H/ACA small nucleolar ribonucleoproteins

CORRIGENDUM

Corrigendum: Telomeric small RNAs in the genus Caenorhabditis

This Issue

Current Issue

In This Issue

Sequence-specific m⁶A demethylation in RNA by FTO fused to RCas9