Table of Contents

EDITORIAL

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2021 Recipients of the RNA Journal Prize
RNA March 2022 28: vii

BIOINFORMATICS

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sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs
- Andrea Di Gioacchino,
- Rachel Legendre,
- Yannis Rahou,
- Valérie Najburg,
- Pierre Charneau,
- Benjamin D. Greenbaum,
- Frédéric Tangy,
- Sylvie van der Werf,
- Simona Cocco,
- and Anastassia V. Komarova
RNA March 2022 28: 277-289; Published in Advance December 22, 2021, doi:10.1261/rna.078969.121
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REPORT

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The landscape of translational stall sites in bacteria revealed by monosome and disome profiling
- Tomoya Fujita,
- Takeshi Yokoyama,
- Mikako Shirouzu,
- Hideki Taguchi,
- Takuhiro Ito,
- and Shintaro Iwasaki
RNA March 2022 28: 290-302; Published in Advance December 14, 2021, doi:10.1261/rna.078188.120

ARTICLES

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Splicing efficiency of minor introns in a mouse model of SMA predominantly depends on their branchpoint sequence and can involve the contribution of major spliceosome components
- Valentin Jacquier,
- Manon Prévot,
- Thierry Gostan,
- Rémy Bordonné,
- Sofia Benkhelifa-Ziyyat,
- Martine Barkats,
- and Johann Soret
RNA March 2022 28: 303-319; Published in Advance December 10, 2021, doi:10.1261/rna.078329.120
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Frameshifting at collided ribosomes is modulated by elongation factor eEF3 and by integrated stress response regulators Gcn1 and Gcn20
- Lisa Houston,
- Evan M. Platten,
- Sara M. Connelly,
- Jiyu Wang,
- and Elizabeth J. Grayhack
RNA March 2022 28: 320-339; Published in Advance December 16, 2021, doi:10.1261/rna.078964.121
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Nonstandard RNA/RNA interactions likely enhance folding and stability of segmented ribosomes
- Mario Rivas and
- George E. Fox
RNA March 2022 28: 340-352; Published in Advance December 7, 2021, doi:10.1261/rna.079006.121
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RNA uridyl transferases TUT4/7 differentially regulate miRNA variants depending on the cancer cell type
- Ragini Medhi,
- Jonathan Price,
- Giulia Furlan,
- Beronia Gorges,
- Alexandra Sapetschnig,
- and Eric A. Miska
RNA March 2022 28: 353-370; Published in Advance December 23, 2021, doi:10.1261/rna.078976.121
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Release of the ribosome biogenesis factor Bud23 from small subunit precursors in yeast
- Joshua J. Black and
- Arlen W. Johnson
RNA March 2022 28: 371-389; Published in Advance December 21, 2021, doi:10.1261/rna.079025.121

METHODS

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Development of an RNA–protein crosslinker to capture protein interactions with diverse RNA structures in cells
- Yan Han,
- Xuzhen Guo,
- Tiancai Zhang,
- Jiangyun Wang,
- and Keqiong Ye
RNA March 2022 28: 390-399; Published in Advance December 16, 2021, doi:10.1261/rna.078896.121
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Nanopore sequencing of RNA and cDNA molecules in Escherichia coli
- Felix Grünberger,
- Sébastien Ferreira-Cerca,
- and Dina Grohmann
RNA March 2022 28: 400-417; Published in Advance December 14, 2021, doi:10.1261/rna.078937.121
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A versatile tRNA modification-sensitive northern blot method with enhanced performance
- Abdul Khalique,
- Sandy Mattijssen,
- and Richard J. Maraia
RNA March 2022 28: 418-432; Published in Advance December 20, 2021, doi:10.1261/rna.078929.121
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Quantitative intracellular retention of delivered RNAs through optimized cell fixation and immunostaining
- Prasath Paramasivam,
- Martin Stöter,
- Eloina Corradi,
- Irene Dalla Costa,
- Andreas Höijer,
- Stefano Bartesaghi,
- Alan Sabirsh,
- Lennart Lindfors,
- Marianna Yanez Arteta,
- Peter Nordberg,
- Shalini Andersson,
- Marie-Laure Baudet,
- Marc Bickle,
- and Marino Zerial
RNA March 2022 28: 433-446; Published in Advance December 23, 2021, doi:10.1261/rna.078895.121
OPEN ACCESS ARTICLE

EDITORIAL

2021 Recipients of the RNA Journal Prize

BIOINFORMATICS

sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs

REPORT

The landscape of translational stall sites in bacteria revealed by monosome and disome profiling

ARTICLES

Splicing efficiency of minor introns in a mouse model of SMA predominantly depends on their branchpoint sequence and can involve the contribution of major spliceosome components

Frameshifting at collided ribosomes is modulated by elongation factor eEF3 and by integrated stress response regulators Gcn1 and Gcn20

Nonstandard RNA/RNA interactions likely enhance folding and stability of segmented ribosomes

RNA uridyl transferases TUT4/7 differentially regulate miRNA variants depending on the cancer cell type

Release of the ribosome biogenesis factor Bud23 from small subunit precursors in yeast

METHODS

Development of an RNA–protein crosslinker to capture protein interactions with diverse RNA structures in cells

Nanopore sequencing of RNA and cDNA molecules in Escherichia coli

A versatile tRNA modification-sensitive northern blot method with enhanced performance

Quantitative intracellular retention of delivered RNAs through optimized cell fixation and immunostaining

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