Table of Contents

July 2015; 21 (7)

BIOINFORMATICS

  • Conserved RNA secondary structures and long-range interactions in hepatitis C viruses

    • Markus Fricke,
    • Nadia Dünnes,
    • Margarita Zayas,
    • Ralf Bartenschlager,
    • Michael Niepmann,
    • and Manja Marz
    RNA July 2015 21: 1219-1232; Published in Advance May 11, 2015, doi:10.1261/rna.049338.114

REPORTS

  • Contribution of two conserved histidines to the dual activity of archaeal RNA guide-dependent and -independent pseudouridine synthase Cbf5

    • Anne-Sophie Tillault,
    • Jean-Baptiste Fourmann,
    • Christine Loegler,
    • Hans-Joachim Wieden,
    • Ute Kothe,
    • and Bruno Charpentier
    RNA July 2015 21: 1233-1239; Published in Advance May 19, 2015, doi:10.1261/rna.051425.115

  • Reduced expression of the mouse ribosomal protein Rpl17 alters the diversity of mature ribosomes by enhancing production of shortened 5.8S rRNA

    • Minshi Wang,
    • Andrey V. Parshin,
    • Natalia Shcherbik,
    • and Dimitri G. Pestov
    RNA July 2015 21: 1240-1248; Published in Advance May 20, 2015, doi:10.1261/rna.051169.115

ARTICLES

  • Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM

    • Sonja Petkovic,
    • Stefan Badelt,
    • Stephan Block,
    • Christoph Flamm,
    • Mihaela Delcea,
    • Ivo Hofacker,
    • and Sabine Müller
    RNA July 2015 21: 1249-1260; Published in Advance May 21, 2015, doi:10.1261/rna.047670.114
    OPEN ACCESS ARTICLE

  • Shifts in temperature within the physiologic range modify strand-specific expression of select human microRNAs

    • Ratnakar Potla,
    • Ishwar S. Singh,
    • Sergei P. Atamas,
    • and Jeffrey D. Hasday
    RNA July 2015 21: 1261-1273; Published in Advance May 27, 2015, doi:10.1261/rna.049122.114
    OPEN ACCESS ARTICLE

  • Multiple conformations are a conserved and regulatory feature of the RB1 5′ UTR

    • Katrina M. Kutchko,
    • Wes Sanders,
    • Ben Ziehr,
    • Gabriela Phillips,
    • Amanda Solem,
    • Matthew Halvorsen,
    • Kevin M. Weeks,
    • Nathaniel Moorman,
    • and Alain Laederach
    RNA July 2015 21: 1274-1285; Published in Advance May 21, 2015, doi:10.1261/rna.049221.114
    OPEN ACCESS ARTICLE

  • The Ll.LtrB intron from Lactococcus lactis excises as circles in vivo: insights into the group II intron circularization pathway

    • Caroline Monat,
    • Cecilia Quiroga,
    • Felix Laroche-Johnston,
    • and Benoit Cousineau
    RNA July 2015 21: 1286-1293; Published in Advance May 8, 2015, doi:10.1261/rna.046367.114

  • LARP4B is an AU-rich sequence associated factor that promotes mRNA accumulation and translation

    • Maritta Küspert,
    • Yasuhiro Murakawa,
    • Katrin Schäffler,
    • Jens T. Vanselow,
    • Elmar Wolf,
    • Stefan Juranek,
    • Andreas Schlosser,
    • Markus Landthaler,
    • and Utz Fischer
    RNA July 2015 21: 1294-1305; Published in Advance May 22, 2015, doi:10.1261/rna.051441.115

  • DcpS is a transcript-specific modulator of RNA in mammalian cells

    • Mi Zhou,
    • Sophie Bail,
    • Heather L. Plasterer,
    • James Rusche,
    • and Megerditch Kiledjian
    RNA July 2015 21: 1306-1312; Published in Advance May 22, 2015, doi:10.1261/rna.051573.115

  • Thermodynamic examination of 1- to 5-nt purine bulge loops in RNA and DNA constructs

    • Shane Strom,
    • Evgenia Shiskova,
    • Yaeeun Hahm,
    • and Neena Grover
    RNA July 2015 21: 1313-1322; Published in Advance May 28, 2015, doi:10.1261/rna.046631.114

  • Analysis of r-protein and RNA conformation of 30S subunit intermediates in bacteria

    • Nathan Napper and
    • Gloria M. Culver
    RNA July 2015 21: 1323-1334; Published in Advance May 21, 2015, doi:10.1261/rna.048918.114

  • Xenopus CAF1 requires NOT1-mediated interaction with 4E-T to repress translation in vivo

    • Shruti Waghray,
    • Clay Williams,
    • Joshua J. Coon,
    • and Marvin Wickens
    RNA July 2015 21: 1335-1345; Published in Advance May 26, 2015, doi:10.1261/rna.051565.115

  • Systematic analysis of the Hmga2 3′ UTR identifies many independent regulatory sequences and a novel interaction between distal sites

    • Katla Kristjánsdóttir,
    • Elizabeth A. Fogarty,
    • and Andrew Grimson
    RNA July 2015 21: 1346-1360; Published in Advance May 21, 2015, doi:10.1261/rna.051177.115
    OPEN ACCESS ARTICLE

METHODS

  • Profiling ribonucleotide modifications at full-transcriptome level: a step toward MS-based epitranscriptomics

    • Rebecca E. Rose,
    • Ryan Quinn,
    • Jackie L. Sayre,
    • and Daniele Fabris
    RNA July 2015 21: 1361-1374; Published in Advance May 20, 2015, doi:10.1261/rna.049429.114

  • EnD-Seq and AppEnD: sequencing 3′ ends to identify nontemplated tails and degradation intermediates

    • Joshua D. Welch,
    • Michael K. Slevin,
    • Deirdre C. Tatomer,
    • Robert J. Duronio,
    • Jan F. Prins,
    • and William F. Marzluff
    RNA July 2015 21: 1375-1389; Published in Advance May 26, 2015, doi:10.1261/rna.048785.114

CORRIGENDUM

  • Corrigendum: Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells

    • Camilla Iannone,
    • Andy Pohl,
    • Panagiotis Papasaikas,
    • Daniel Soronellas,
    • Guillermo P. Vicent,
    • Miguel Beato,
    • and Juan Valcárcel
    RNA July 2015 21: 1390
    OPEN ACCESS ARTICLE
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This Issue

July 2015; 21 (7)
Cover
  1. BIOINFORMATICS
  2. REPORTS
  3. ARTICLES
  4. METHODS
  5. CORRIGENDUM

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