Table of Contents

PERSPECTIVE

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Mechanistic insights from reversible splicing catalysis
- Duncan J. Smith and
- Maria M. Konarska
RNA October 2008 14: 1975-1978; Published in Advance August 28, 2008, doi:10.1261/rna.1289808

BIOINFORMATICS

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ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
- Suzy M. Vasa,
- Nicolas Guex,
- Kevin A. Wilkinson,
- Kevin M. Weeks,
- and Morgan C. Giddings
RNA October 2008 14: 1979-1990; Published in Advance September 4, 2008, doi:10.1261/rna.1166808

REPORT

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The C-terminal region of Ge-1 presents conserved structural features required for P-body localization
- Martin Jinek,
- Ana Eulalio,
- Andreas Lingel,
- Sigrun Helms,
- Elena Conti,
- and Elisa Izaurralde
RNA October 2008 14: 1991-1998; Published in Advance August 28, 2008, doi:10.1261/rna.1222908

ARTICLES

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The sarcin–ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit
- Laura Lancaster,
- Nicole J. Lambert,
- Eric J. Maklan,
- Lucas H. Horan,
- and Harry F. Noller
RNA October 2008 14: 1999-2012; Published in Advance August 28, 2008, doi:10.1261/rna.1202108
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Toward predicting self-splicing and protein-facilitated splicing of group I introns
- Quentin Vicens,
- Paul J. Paukstelis,
- Eric Westhof,
- Alan M. Lambowitz,
- and Thomas R. Cech
RNA October 2008 14: 2013-2029; Published in Advance September 3, 2008, doi:10.1261/rna.1027208
OPEN ACCESS ARTICLE
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Novel noncoding antisense RNA transcribed from human anti-NOS2A locus is differentially regulated during neuronal differentiation of embryonic stem cells
- Sergei A. Korneev,
- Elena I. Korneeva,
- Marya A. Lagarkova,
- Sergei L. Kiselev,
- Giles Critchley,
- and Michael O'Shea
RNA October 2008 14: 2030-2037; doi:10.1261/rna.1084308
OPEN ACCESS ARTICLE
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A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4
- Justin D. Topp,
- Jason Jackson,
- Alexis A. Melton,
- and Kristen W. Lynch
RNA October 2008 14: 2038-2049; Published in Advance August 21, 2008, doi:10.1261/rna.1212008
OPEN ACCESS ARTICLE
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C. elegans and H. sapiens mRNAs with edited 3′ UTRs are present on polysomes
- Heather A. Hundley,
- Ammie A. Krauchuk,
- and Brenda L. Bass
RNA October 2008 14: 2050-2060; Published in Advance August 21, 2008, doi:10.1261/rna.1165008
OPEN ACCESS ARTICLE
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TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export
- Emmanuel Vanrobays,
- Alexis Leplus,
- Yvonne N. Osheim,
- Ann L. Beyer,
- Ludivine Wacheul,
- and Denis L.J. Lafontaine
RNA October 2008 14: 2061-2073; Published in Advance August 28, 2008, doi:10.1261/rna.1176708
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Screening of human SNP database identifies recoding sites of A-to-I RNA editing
- Willemijn M. Gommans,
- Nicholas E. Tatalias,
- Christina P. Sie,
- Dylan Dupuis,
- Nicholas Vendetti,
- Lauren Smith,
- Rikhi Kaushal,
- and Stefan Maas
RNA October 2008 14: 2074-2085; Published in Advance September 4, 2008, doi:10.1261/rna.816908
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Long-distance placement of substrate RNA by H/ACA proteins
- Bo Liang,
- Elliot J. Kahen,
- Kate Calvin,
- Jing Zhou,
- Mario Blanco,
- and Hong Li
RNA October 2008 14: 2086-2094; Published in Advance August 28, 2008, doi:10.1261/rna.1109808
OPEN ACCESS ARTICLE
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tRNA cleavage is a conserved response to oxidative stress in eukaryotes
- Debrah M. Thompson,
- Cheng Lu,
- Pamela J. Green,
- and Roy Parker
RNA October 2008 14: 2095-2103; Published in Advance August 21, 2008, doi:10.1261/rna.1232808
OPEN ACCESS ARTICLE
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Identification of specific let-7 microRNA binding complexes in Caenorhabditis elegans
- Shih-Peng Chan,
- Gopalakrishna Ramaswamy,
- Eun-Young Choi,
- and Frank J. Slack
RNA October 2008 14: 2104-2114; Published in Advance August 21, 2008, doi:10.1261/rna.551208
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Mir-302 reprograms human skin cancer cells into a pluripotent ES-cell-like state
- Shi-Lung Lin,
- Donald C. Chang,
- Samantha Chang-Lin,
- Chun-Hung Lin,
- David T.S. Wu,
- David T. Chen,
- and Shao-Yao Ying
RNA October 2008 14: 2115-2124; Published in Advance August 28, 2008, doi:10.1261/rna.1162708
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Effects of N²,N² -dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m² ₂G:A pairs
- Pradeep S. Pallan,
- Christoph Kreutz,
- Silvia Bosio,
- Ronald Micura,
- and Martin Egli
RNA October 2008 14: 2125-2135; Published in Advance September 4, 2008, doi:10.1261/rna.1078508
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Interactions between eIF4AI and its accessory factors eIF4B and eIF4H
- Nadja Rozovsky,
- Aimee C. Butterworth,
- and Melissa J. Moore
RNA October 2008 14: 2136-2148; Published in Advance August 21, 2008, doi:10.1261/rna.1049608
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lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo
- Ashis Chowdhury and
- Sundaresan Tharun
RNA October 2008 14: 2149-2158; Published in Advance August 21, 2008, doi:10.1261/rna.1094208
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Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5′-terminal AUG
- Jay E. Brock,
- Soheil Pourshahian,
- Jacqueline Giliberti,
- Patrick A. Limbach,
- and Gary R. Janssen
RNA October 2008 14: 2159-2169; Published in Advance August 28, 2008, doi:10.1261/rna.1089208
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Activation of cap-independent translation by variant eukaryotic initiation factor 4G in vivo
- Constanze Kaiser,
- Elena Y. Dobrikova,
- Shelton S. Bradrick,
- Mayya Shveygert,
- James T. Herbert,
- and Matthias Gromeier
RNA October 2008 14: 2170-2182; Published in Advance August 28, 2008, doi:10.1261/rna.1171808
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A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae
- Bo Huang,
- Jian Lu,
- and Anders S. Byström
RNA October 2008 14: 2183-2194; Published in Advance August 28, 2008, doi:10.1261/rna.1184108
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Trypanosoma brucei ATPase subunit 6 mRNA bound to gA6-14 forms a conserved three-helical structure
- Larissa Reifur and
- Donna J. Koslowsky
RNA October 2008 14: 2195-2211; Published in Advance September 4, 2008, doi:10.1261/rna.1144508
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Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme
- Jennifer L. Boots,
- Marella D. Canny,
- Ehsan Azimi,
- and Arthur Pardi
RNA October 2008 14: 2212-2222; Published in Advance August 28, 2008, doi:10.1261/rna.1010808
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Identification of pseudouridine methyltransferase in Escherichia coli
- Rya Ero,
- Lauri Peil,
- Aivar Liiv,
- and Jaanus Remme
RNA October 2008 14: 2223-2233; Published in Advance August 28, 2008, doi:10.1261/rna.1186608
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YbeA is the m³Ψ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA
- Elzbieta Purta,
- Katarzyna H. Kaminska,
- Joanna M. Kasprzak,
- Janusz M. Bujnicki,
- and Stephen Douthwaite
RNA October 2008 14: 2234-2244; Published in Advance August 28, 2008, doi:10.1261/rna.1198108

METHODS

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Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3′ end
- Chun-Mei Zhang,
- Cuiping Liu,
- Thomas Christian,
- Howard Gamper,
- Jef Rozenski,
- Dongli Pan,
- John B. Randolph,
- Eric Wickstrom,
- Barry S. Cooperman,
- and Ya-Ming Hou
RNA October 2008 14: 2245-2253; Published in Advance August 28, 2008, doi:10.1261/rna.1158508
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Site-specific crosslinking of human microRNPs to RNA targets
- Yohei Kirino and
- Zissimos Mourelatos
RNA October 2008 14: 2254-2259; Published in Advance August 21, 2008, doi:10.1261/rna.1133808

PERSPECTIVE

Mechanistic insights from reversible splicing catalysis

BIOINFORMATICS

ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

REPORT

The C-terminal region of Ge-1 presents conserved structural features required for P-body localization

ARTICLES

The sarcin–ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit

Toward predicting self-splicing and protein-facilitated splicing of group I introns

Novel noncoding antisense RNA transcribed from human anti-NOS2A locus is differentially regulated during neuronal differentiation of embryonic stem cells

A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4

C. elegans and H. sapiens mRNAs with edited 3′ UTRs are present on polysomes

TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export

Screening of human SNP database identifies recoding sites of A-to-I RNA editing

Long-distance placement of substrate RNA by H/ACA proteins

tRNA cleavage is a conserved response to oxidative stress in eukaryotes

Identification of specific let-7 microRNA binding complexes in Caenorhabditis elegans

Mir-302 reprograms human skin cancer cells into a pluripotent ES-cell-like state

Effects of N²,N² -dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m² ₂G:A pairs

Interactions between eIF4AI and its accessory factors eIF4B and eIF4H

lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5′-terminal AUG

Activation of cap-independent translation by variant eukaryotic initiation factor 4G in vivo

A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae

Trypanosoma brucei ATPase subunit 6 mRNA bound to gA6-14 forms a conserved three-helical structure

Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme

Identification of pseudouridine methyltransferase in Escherichia coli

YbeA is the m³Ψ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA

METHODS

Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3′ end

Site-specific crosslinking of human microRNPs to RNA targets

This Issue

Current Issue

In This Issue

Table of Contents

PERSPECTIVE

Mechanistic insights from reversible splicing catalysis

BIOINFORMATICS

ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

REPORT

The C-terminal region of Ge-1 presents conserved structural features required for P-body localization

ARTICLES

The sarcin–ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit

Toward predicting self-splicing and protein-facilitated splicing of group I introns

Novel noncoding antisense RNA transcribed from human anti-NOS2A locus is differentially regulated during neuronal differentiation of embryonic stem cells

A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4

C. elegans and H. sapiens mRNAs with edited 3′ UTRs are present on polysomes

TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export

Screening of human SNP database identifies recoding sites of A-to-I RNA editing

Long-distance placement of substrate RNA by H/ACA proteins

tRNA cleavage is a conserved response to oxidative stress in eukaryotes

Identification of specific let-7 microRNA binding complexes in Caenorhabditis elegans

Mir-302 reprograms human skin cancer cells into a pluripotent ES-cell-like state

Effects of N2,N2 -dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m2 2G:A pairs

Interactions between eIF4AI and its accessory factors eIF4B and eIF4H

lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5′-terminal AUG

Activation of cap-independent translation by variant eukaryotic initiation factor 4G in vivo

A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae

Trypanosoma brucei ATPase subunit 6 mRNA bound to gA6-14 forms a conserved three-helical structure

Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme

Identification of pseudouridine methyltransferase in Escherichia coli

YbeA is the m3Ψ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA

METHODS

Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3′ end

Site-specific crosslinking of human microRNPs to RNA targets

This Issue

Current Issue

In This Issue

Effects of N²,N² -dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m² ₂G:A pairs

YbeA is the m³Ψ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA