Table of Contents

PERSPECTIVE

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A glimpse into the active site of a group II intron and maybe the spliceosome, too
- Kwaku T. Dayie and
- Richard A. Padgett
RNA September 2008 14: 1697-1703; Published in Advance July 24, 2008, doi:10.1261/rna.1154408

BIOINFORMATICS

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Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties
- Dawn M. Simon,
- Nicholas A.C. Clarke,
- Bonnie A. McNeil,
- Ian Johnson,
- Davin Pantuso,
- Lixin Dai,
- Dinggeng Chai,
- and Steven Zimmerly
RNA September 2008 14: 1704-1713; Published in Advance August 1, 2008, doi:10.1261/rna.1056108

REPORTS

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Potent RNAi by short RNA triggers
- Chia-ying Chu and
- Tariq M. Rana
RNA September 2008 14: 1714-1719; Published in Advance July 24, 2008, doi:10.1261/rna.1161908
OPEN ACCESS ARTICLE
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Firefly luciferase gene contains a cryptic promoter
- Václav Vopálenský,
- Tomáš Mašek,
- Ondřej Horváth,
- Blanka Vicenová,
- Martin Mokrejš,
- and Martin Pospíšek
RNA September 2008 14: 1720-1729; Published in Advance August 12, 2008, doi:10.1261/rna.831808
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All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5′-terminal oligopyrimidine (TOP) mRNAs
- Valentina Iadevaia,
- Sara Caldarola,
- Elisa Tino,
- Francesco Amaldi,
- and Fabrizio Loreni
RNA September 2008 14: 1730-1736; Published in Advance July 24, 2008, doi:10.1261/rna.1037108

ARTICLES

METHOD

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High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
- Lars Dölken,
- Zsolt Ruzsics,
- Bernd Rädle,
- Caroline C. Friedel,
- Ralf Zimmer,
- Jörg Mages,
- Reinhard Hoffmann,
- Paul Dickinson,
- Thorsten Forster,
- Peter Ghazal,
- and Ulrich H. Koszinowski
RNA September 2008 14: 1959-1972; Published in Advance July 24, 2008, doi:10.1261/rna.1136108

PERSPECTIVE

A glimpse into the active site of a group II intron and maybe the spliceosome, too

BIOINFORMATICS

Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties

REPORTS

Potent RNAi by short RNA triggers

Firefly luciferase gene contains a cryptic promoter

All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5′-terminal oligopyrimidine (TOP) mRNAs

ARTICLES

Human RNA 5′-kinase (hClp1) can function as a tRNA splicing enzyme in vivo

Mechanistic characterization of the HDV genomic ribozyme: The cleavage site base pair plays a structural role in facilitating catalysis

The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain

On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin

Trans-splicing versatility of the Ll.LtrB group II intron

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication

DAZAP1, an hnRNP protein, is required for normal growth and spermatogenesis in mice

Functional and intracellular localization properties of U6 promoter-expressed siRNAs, shRNAs, and chimeric VA1 shRNAs in mammalian cells

Minimizing variables among hairpin-based RNAi vectors reveals the potency of shRNAs

Noncanonical G(syn)–G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

Potent activation of FGF-2 IRES-dependent mechanism of translation during brain development

Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner

Anticodon loop mutations perturb reading frame maintenance by the E site tRNA

A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo

Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

The role of human ribosomal proteins in the maturation of rRNA and ribosome production

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK _a

Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast

METHOD

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

This Issue

Current Issue

In This Issue

Table of Contents

PERSPECTIVE

A glimpse into the active site of a group II intron and maybe the spliceosome, too

BIOINFORMATICS

Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties

REPORTS

Potent RNAi by short RNA triggers

Firefly luciferase gene contains a cryptic promoter

All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5′-terminal oligopyrimidine (TOP) mRNAs

ARTICLES

Human RNA 5′-kinase (hClp1) can function as a tRNA splicing enzyme in vivo

Mechanistic characterization of the HDV genomic ribozyme: The cleavage site base pair plays a structural role in facilitating catalysis

The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain

On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin

Trans-splicing versatility of the Ll.LtrB group II intron

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication

DAZAP1, an hnRNP protein, is required for normal growth and spermatogenesis in mice

Functional and intracellular localization properties of U6 promoter-expressed siRNAs, shRNAs, and chimeric VA1 shRNAs in mammalian cells

Minimizing variables among hairpin-based RNAi vectors reveals the potency of shRNAs

Noncanonical G(syn)–G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

Potent activation of FGF-2 IRES-dependent mechanism of translation during brain development

Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner

Anticodon loop mutations perturb reading frame maintenance by the E site tRNA

A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo

Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

The role of human ribosomal proteins in the maturation of rRNA and ribosome production

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a

Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast

METHOD

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

This Issue

Current Issue

In This Issue

The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK _a