A method of comprehensive sequencing analysis of the small RNA fragmentome (RiboMarker)

TABLE 2.

Sequences of spike-in RNAs (stsRNAs) having barcodes (underlined) specific to each RNA Type

RNA Type Length (nt) Sequences and ends (5′ 3′)
1 20 pNNNNGAGCGUGAUCAGNNNN
1 30 pNNNNUAUCAGUGCGUGAUGUCUCAGUNNNN
1 40 pNNNNCAUCGAUCUGAUCCGUGAUACGAAGUCUACUGNNNN
1 50 pNNNNAUGUCACUAUGAGUCACACGUGAUAUCACACUCUACUACUCUNNNN
1 60 pNNNNGACAGUGAUGACAACACACUCAGCGUGAUGUACUCAUAGCAAGCGACACUAUNNNN
2 20 NNNNGAGACAUCGCAGNNNN
2 30 NNNNUAUCAGUGACAUCGGUCUCAGUNNNN
2 40 NNNNCAUCGAUCUGAUCACAUCGACGAAGUCUACUGNNNN
2 50 NNNNAUGUCACUAUGAGUCACAACAUCGAUCACACUCUACUACUCUNNNN
2 60 NNNNGACAGUGAUGACAACACACUCAGACAUCGGUACUCAUAGCAAGCGACACUAUNNNN
3 20 NNNNGAGGCCUAACAGNNNNp
3 30 NNNNUAUCAGUGGCCUAAGUCUCAGUNNNNp
3 40 NNNNCAUCGAUCUGAUCGCCUAAACGAAGUCUACUGNNNNp
3 50 NNNNAUGUCACUAUGAGUCACAGCCUAAAUCACACUCUACUACUCUNNNNp
3 60 NNNNGACAGUGAUGACAACACACUCAGGCCUAAGUACUCAUAGCAAGCGACACUAUNNNNp
4 20 pNNNNGAGUGGUCACAGNNNNp
4 30 pNNNNUAUCAGUGUGGUCAGUCUCAGUNNNNp
4 40 pNNNNCAUCGAUCUGAUCUGGUCAACGAAGUCUACUGNNNNp
4 50 pNNNNAUGUCACUAUGAGUCACAUGGUCAAUCACACUCUACUACUCUNNNNp
4 60 pNNNNGACAGUGAUGACAACACACUCAGUGGUCAGUACUCAUAGCAAGCGACACUAUNNNNp

This Article

  1. RNA 32: 1156-1181