Codon bias shapes bacterial small RNA binding sites within protein-coding sequences

Conservation of sRNAs. For each sRNA, the number of organisms in which it is conserved in each family of the Enterobacterales order is noted. The top numbers indicate the number of organisms in each family. Names of families: Enterobac.- Enterobacteriaceae; Erwinia.- Erwiniaceae; Pectobac.- Pectobacteriaceae; Yersinia.- Yersiniaceae; Hafnia.- Hafniaceae; Morgane.- Morganellaceae; Bruguieri.- Bruguierivoracaceae; Budvicia.- Budviciaceae. First presented are canonical sRNAs (in alphabetical order) and next are 3′UTR-derived sRNAs (in alphabetical order). For the sRNAs ArcZ, CyaR, DsrA, MicA, RprA, Spf, RyhB, the orthologs and binding site region were identified by Infernal and for the other sRNAs by BLAST.