Identification of 3D motifs in Rfam with JAR3D

Table 1.

Results from searching Rfam for possible instances of IL_26307.2, a 7x6 sarcin-ricin internal loop motif.

Rfam Accession Rfam Name Loop Number Acceptance Rate Mean Cutoff Score PDB Count
RF00011 Bacterial RNase P class B 9 61.82 14.95 27
RF00061 Hepatitis C virus internal ribosome entry site 6 100.00 20.18 28
RF00468 Hepatitis C virus stem-loop VII 2 43.64 5.97 0
RF01446 small nucleolar RNA snR95 11 100.00 20.39 0
RF01703 Dictyoglomi-1 RNA 4 100.00 88.25 0
RF01703 Dictyoglomi-1 RNA 9 100.00 24.87 0
RF01703 Dictyoglomi-1 RNA 12 100.00 85.19 0
RF01703 Dictyoglomi-1 RNA 15 100.00 78.51 0
RF02014 mir-1178 microRNA precursor family 2 100.00 42.63 0
RF02686 RAGATH-6 RNA 2 100.00 62.68 0
RF02921 RT-14 RNA 12 83.92 46.27 0
RF03019 RT-16 RNA 9 80.30 5.06 0
RF03020 RT-17 RNA 3 98.41 52.58 0
RF03021 RT-18 RNA 3 99.29 93.13 0
RF03022 RT-10 RNA 8 96.46 79.74 9
RF03064 RAGATH-18 RNA 3 98.24 70.41 1
RF03072 raiA RNA 11 81.52 47.61 3
RF03073 RT-19 RNA 3 100.00 57.00 0
RF03087 ROOL RNA 28 86.21 51.6 30
RF03121 Alphacoronavirus 3'UTR 6 58.82 13.08 1
RF03125 Sarbecovirus 3'UTR 14 100 0.34 1
RF03535 Staphylococcus aureus small RNA TEG147 1 100 95.63 0

This Article

  1. RNA 32: 555-567