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RNA and Gene Expression

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  ZYS-1 is not an ADAR1 inhibitor

  • Cassandra N. Smoak,
  • Estelle N. Gardner,
  • Renee N. Chua,
  • and Kyle A. Cottrell

  RNA December 2025 31: 1703-1711; Published in Advance September 16, 2025, doi:10.1261/rna.080721.125
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  Polyadenylation landscape of in vivo long-term potentiation in the rat brain

  • Natalia Gumińska,
  • Francois P. Pauzin,
  • Bożena Kuźniewska,
  • Jacek Miłek,
  • Patrycja Wardaszka-Pianka,
  • Paweł S. Krawczyk,
  • Seweryn Mroczek,
  • Sebastian Jeleń,
  • Patrick U. Pagenhart,
  • Clive R. Bramham,
  • Andrzej Dziembowski,
  • and Magdalena Dziembowska

  RNA December 2025 31: 1712-1734; Published in Advance September 17, 2025, doi:10.1261/rna.080485.125
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  The codon context provides cis-acting immune evasion for the human papilloma virus (HPV) E6

  • Aikaterini Thermou,
  • Chrysoula Daskalogianni,
  • Lixiao Wang,
  • Laurence Malbert-Colas,
  • Van-Trang Dinh,
  • Mathilde Lavigne,
  • Marc Blondel,
  • Robin Fahraeus,
  • and Justine Habault

  RNA December 2025 31: 1735-1748; Published in Advance September 16, 2025, doi:10.1261/rna.080390.125
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  Specific targeting of transcriptional T-box riboswitches leads to effective inhibition of S. aureus

  • Nikoleta Giarimoglou,
  • Adamantia Kouvela,
  • Athanasios Papakyriakou,
  • Jinwei Zhang,
  • Vassiliki Stamatopoulou,
  • and Constantinos Stathopoulos

  RNA December 2025 31: 1749-1765; Published in Advance September 17, 2025, doi:10.1261/rna.080644.125
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  Integrated NMR and MD structure and dynamics of the stem–loop-II motif (s2m) from the Omicron variant of SARS-CoV-2

  • Tobias Matzel,
  • Joseph A. Makowski,
  • Adam H. Kensinger,
  • Andreas Oxenfarth,
  • Maria Wirtz Martin,
  • Jeffrey D. Evanseck,
  • and Harald Schwalbe

  RNA December 2025 31: 1766-1787; Published in Advance September 19, 2025, doi:10.1261/rna.080576.125
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  Desthiobiotin (DTB)–modified and TAMRA-modified 2″OMeNAD⁺ are RNA 2′-phosphotransferase (Tpt1) poisons that enable affinity-tagging and fluorescence-tagging of internal RNA 2′-phosphate groups

  • Renata Kasprzyk,
  • Shreya Ghosh,
  • and Stewart Shuman

  RNA December 2025 31: 1788-1799; Published in Advance September 18, 2025, doi:10.1261/rna.080707.125
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  Interdomain assembly between the fungal tRNA ligase adenylyltransferase and kinase domain

  • Sandra Köhler and
  • Jirka Peschek

  RNA December 2025 31: 1800-1811; Published in Advance September 22, 2025, doi:10.1261/rna.080592.125
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  Depurination of sarcin/ricin loop 25S rRNA is signaled through the small ribosomal subunit during translation

  • Tanya Prashar and
  • Katalin A. Hudak

  RNA December 2025 31: 1812-1825; Published in Advance September 23, 2025, doi:10.1261/rna.080559.125
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  Splice site diversity and abundance of noncanonical introns in diplonemids (Diplonemea, Euglenozoa)

  • Prasoon K. Thakur,
  • Anzhelika Butenko,
  • Filip Karásek,
  • Michaela Svobodová,
  • Drahomíra Faktorová,
  • Hana Pavlisková,
  • Vladimir Varga,
  • Aleš Horák,
  • Julius Lukeš,
  • and David Staněk

  RNA December 2025 31: 1826-1840; Published in Advance September 30, 2025, doi:10.1261/rna.080641.125
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  ykkC-I riboswitch aptamer domain requires an interplay between metal triad and cationic ligand: insights into metal ion–induced allostery from molecular dynamics simulations

  • Indu Negi and
  • Stacey D. Wetmore

  RNA December 2025 31: 1841-1858; Published in Advance October 7, 2025, doi:10.1261/rna.080619.125
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  Structural and mechanistic insights into Dis3L2-mediated degradation of structured RNA

  • Rute G. Matos,
  • Ankur Garg,
  • Susana M. Costa,
  • Patrícia Pereira,
  • Cecília M. Arraiano,
  • Leemor Joshua-Tor,
  • and Sandra C. Viegas

  RNA December 2025 31: 1859-1871; Published in Advance October 1, 2025, doi:10.1261/rna.080685.125
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  UPF1 shuttles between nucleus and cytoplasm independently of its RNA-binding and ATPase activities

  • Sofia Nasif,
  • Andrea Brigitte Eberle,
  • Karin Schranz,
  • Remo Hadorn,
  • Sutapa Chakrabarti,
  • and Oliver Mühlemann

  RNA December 2025 31: 1872-1885; Published in Advance October 7, 2025, doi:10.1261/rna.080476.125
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  The role of nonsense-mediated mRNA decay in restricting long noncoding RNA expression has been conserved in RNAi-capable budding yeast

  • Maxime Wery,
  • Ugo Szachnowski,
  • Constance Creux,
  • Quentin Fouilleul,
  • Marina Lefrere,
  • and Antonin Morillon

  RNA December 2025 31: 1886-1900; Published in Advance September 30, 2025, doi:10.1261/rna.080458.125
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  New mechanistic insights into prespliceosome formation—roles of DEAD-box proteins Prp5 and Sub2

  • Ching-Yang Kao,
  • Wei-Yu Tsai,
  • Yu-Lun Su,
  • Che-Sheng Chung,
  • and Soo-Chen Cheng

  RNA December 2025 31: 1901-1911; Published in Advance September 30, 2025, doi:10.1261/rna.080720.125
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  Development of a modified RNA circularization system to improve circRNA-based protein expression in mammalian cells

  • Mingting Cui,
  • Shunran Li,
  • Yuhang Han,
  • Minchao Li,
  • Zirong Han,
  • Jun Qian,
  • Zhi Xie,
  • and Caijun Sun

  RNA December 2025 31: 1912-1926; Published in Advance September 11, 2025, doi:10.1261/rna.080733.125
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