TABLE 1.
Top 10 most XIST-similar lncRNAs, as assessed by overall k-mer content
| Transcript ID | Gene name | Transcript length | r-value | Adj. P-value |
|---|---|---|---|---|
| ENST00000626826.1 | HELLPAR | 205,012 | 0.476 | 0 |
| ENST00000570269.2 | ENSG00000259976 | 15,214 | 0.359 | 5.54×10−08 |
| ENST00000663028.1 | ENSG00000286473 | 6197 | 0.344 | 2.27×10−07 |
| ENST00000623833.1 | ENSG00000279717 | 2679 | 0.330 | 7.94×10−07 |
| ENST00000648200.2 | LINC00632 | 21,234 | 0.327 | 8.96×10−07 |
| ENST00000562952.1 | ENSG00000261654 | 5985 | 0.325 | 9.22×10−07 |
| ENST00000617901.1 | ENSG00000277151 | 5305 | 0.324 | 9.22×10−07 |
| ENST00000430027.3 | DLX6-AS1 | 15,364 | 0.321 | 1.08×10−06 |
| ENST00000566193.1 | ENSG00000260197 | 2666 | 0.320 | 1.10×10−06 |
| ENST00000667505.1 | PCDH10-DT | 8044 | 0.314 | 1.74×10−06 |
-
We evaluated the set of nonidentical “Ensembl_canonical” GENCODE v43 lncRNA transcripts that were ≥500 nt in length. Transcript length is shown in nucleotides. SEEKR-derived P-values were adjusted using the Benjamini–Hochberg method.
