VODKA2: a fast and accurate method to detect non-standard viral genomes from large RNA-seq data sets

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

FIGURE 4.
FIGURE 4.

Detection of simulated cbVG and delVG reads. (A,B) Representation of (A) cbVG and (B) delVG break and rejoin points reported by VODKA2 (pink), VODKA (gray: cbVG only), ViReMa (yellow), and DI-tector (blue). Expected results are shown in green. Size of dots is dependent on the number of detected reads at each break/rejoin junction. False positive reads are shown in red.

This Article

  1. Published in Advance October 27, 2023, doi: 10.1261/rna.079747.123 RNA 30: 16-25

Current Issue

  1. July 2026, 32 (7)
  1. Current Issue
  1. Alert me to new issues of RNA