Table of Contents

December 2020; 26 (12)

BIOINFORMATICS

  • Hierarchical natural move Monte Carlo refines flexible RNA structures into cryo-EM densities

    • Jeng-Yih Chang,
    • Zhicheng Cui,
    • Kailu Yang,
    • Jianhua Huang,
    • Peter Minary,
    • and Junjie Zhang
    RNA December 2020 26: 1755-1766; Published in Advance August 21, 2020, doi:10.1261/rna.071100.119

REPORTS

  • The crystal structure of a Polerovirus exoribonuclease-resistant RNA shows how diverse sequences are integrated into a conserved fold

    • Anna-Lena Steckelberg,
    • Quentin Vicens,
    • David A. Costantino,
    • Jay C. Nix,
    • and Jeffrey S. Kieft
    RNA December 2020 26: 1767-1776; Published in Advance August 26, 2020, doi:10.1261/rna.076224.120

  • Human disease-associated single nucleotide polymorphism changes the orientation of DROSHA on pri-mir-146a

    • Cong Truc Le,
    • Thuy Linh Nguyen,
    • Trung Duc Nguyen,
    • and Tuan Anh Nguyen
    RNA December 2020 26: 1777-1786; Published in Advance September 29, 2020, doi:10.1261/rna.077487.120
    OPEN ACCESS ARTICLE

ARTICLES

  • Folding heterogeneity in the essential human telomerase RNA three-way junction

    • Christina Palka,
    • Nicholas M. Forino,
    • Jendrik Hentschel,
    • Rhiju Das,
    • and Michael D. Stone
    RNA December 2020 26: 1787-1800; Published in Advance August 19, 2020, doi:10.1261/rna.077255.120
    OPEN ACCESS ARTICLE

  • Processing of Alu small RNAs by DICER/ADAR1 complexes and their RNAi targets

    • Yusuke Shiromoto,
    • Masayuki Sakurai,
    • Helen Qu,
    • Andrew V. Kossenkov,
    • and Kazuko Nishikura
    RNA December 2020 26: 1801-1814; Published in Advance August 17, 2020, doi:10.1261/rna.076745.120
    OPEN ACCESS ARTICLE

  • Phosphodiester modifications in mRNA poly(A) tail prevent deadenylation without compromising protein expression

    • Dominika Strzelecka,
    • Miroslaw Smietanski,
    • Pawel J. Sikorski,
    • Marcin Warminski,
    • Joanna Kowalska,
    • and Jacek Jemielity
    RNA December 2020 26: 1815-1837; Published in Advance August 20, 2020, doi:10.1261/rna.077099.120
    OPEN ACCESS ARTICLE

  • A rare bacterial RNA motif is implicated in the regulation of the purF gene whose encoded enzyme synthesizes phosphoribosylamine

    • Sarah N. Malkowski,
    • Ruben M. Atilho,
    • Etienne B. Greenlee,
    • Christina E. Weinberg,
    • and Ronald R. Breaker
    RNA December 2020 26: 1838-1846; Published in Advance August 25, 2020, doi:10.1261/rna.077313.120

  • In vitro studies provide insight into effects of Dicer-2 helicase mutations in Drosophila melanogaster

    • Helen M. Donelick,
    • Loïc Talide,
    • Matthieu Bellet,
    • P. Joseph Aruscavage,
    • Emilie Lauret,
    • Eric R.G.R. Aguiar,
    • Joao T. Marques,
    • Carine Meignin,
    • and Brenda L. Bass
    RNA December 2020 26: 1847-1861; Published in Advance August 25, 2020, doi:10.1261/rna.077289.120

  • Site-specific and substrate-specific control of accurate mRNA editing by a helicase complex in trypanosomes

    • Vikas Kumar,
    • Alasdair Ivens,
    • Zachary Goodall,
    • Joshua Meehan,
    • Pawan Kumar Doharey,
    • Andrew Hillhouse,
    • Daniel Osorio Hurtado,
    • James J. Cai,
    • Xiuren Zhang,
    • Achim Schnaufer,
    • and Jorge Cruz-Reyes
    RNA December 2020 26: 1862-1881; Published in Advance September 1, 2020, doi:10.1261/rna.076513.120

  • Interrogation of highly structured RNA with multicomponent deoxyribozyme probes at ambient temperatures

    • Adam J. Reed,
    • Ryan J. Sapia,
    • Charles Dowis,
    • Sheila Solarez,
    • and Yulia V. Gerasimova
    RNA December 2020 26: 1882-1890; Published in Advance August 28, 2020, doi:10.1261/rna.074864.120

  • Resolution of polycistronic RNA by SL2 trans-splicing is a widely conserved nematode trait

    • Marius Wenzel,
    • Christopher Johnston,
    • Berndt Müller,
    • Jonathan Pettitt,
    • and Bernadette Connolly
    RNA December 2020 26: 1891-1904; Published in Advance September 4, 2020, doi:10.1261/rna.076414.120

  • RNA-seq accuracy and reproducibility for the mapping and quantification of influenza defective viral genomes

    • Jeremy Boussier,
    • Sandie Munier,
    • Emna Achouri,
    • Bjoern Meyer,
    • Bernadette Crescenzo-Chaigne,
    • Sylvie Behillil,
    • Vincent Enouf,
    • Marco Vignuzzi,
    • Sylvie van der Werf,
    • and Nadia Naffakh
    RNA December 2020 26: 1905-1918; Published in Advance September 14, 2020, doi:10.1261/rna.077529.120

  • The shift from early to late types of ribosomes in zebrafish development involves changes at a subset of rRNA 2′-O-Me sites

    • Sowmya Ramachandran,
    • Nicolai Krogh,
    • Tor Erik Jørgensen,
    • Steinar Daae Johansen,
    • Henrik Nielsen,
    • and Igor Babiak
    RNA December 2020 26: 1919-1934; Published in Advance September 10, 2020, doi:10.1261/rna.076760.120

  • NineTeen Complex-subunit Salsa is required for efficient splicing of a subset of introns and dorsal–ventral patterning

    • Om Singh Rathore,
    • Rui D. Silva,
    • Mariana Ascensão-Ferreira,
    • Ricardo Matos,
    • Célia Carvalho,
    • Bruno Marques,
    • Margarida N. Tiago,
    • Pedro Prudêncio,
    • Raquel P. Andrade,
    • Jean-Yves Roignant,
    • Nuno L. Barbosa-Morais,
    • and Rui Gonçalo Martinho
    RNA December 2020 26: 1935-1956; Published in Advance September 22, 2020, doi:10.1261/rna.077446.120

  • Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea

    • Philippe Wolff,
    • Claire Villette,
    • Julie Zumsteg,
    • Dimitri Heintz,
    • Laura Antoine,
    • Béatrice Chane-Woon-Ming,
    • Louis Droogmans,
    • Henri Grosjean,
    • and Eric Westhof
    RNA December 2020 26: 1957-1975; Published in Advance September 29, 2020, doi:10.1261/rna.077537.120
    OPEN ACCESS ARTICLE

  • Physiologic RNA targets and refined sequence specificity of coronavirus EndoU

    • Rachel Ancar,
    • Yize Li,
    • Eveline Kindler,
    • Daphne A. Cooper,
    • Monica Ransom,
    • Volker Thiel,
    • Susan R. Weiss,
    • Jay R. Hesselberth,
    • and David J. Barton
    RNA December 2020 26: 1976-1999; Published in Advance September 28, 2020, doi:10.1261/rna.076604.120

  • The origin of the high stability of 3′-terminal uridine tetrads: contributions of hydrogen bonding, stacking interactions, and steric factors evaluated using modified oligonucleotide analogs

    • Witold Andrałojć,
    • Karol Pasternak,
    • Joanna Sarzyńska,
    • Karolina Zielińska,
    • Ryszard Kierzek,
    • and Zofia Gdaniec
    RNA December 2020 26: 2000-2016; Published in Advance September 23, 2020, doi:10.1261/rna.076539.120

  • Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy

    • Dushyant Jahagirdar,
    • Vikash Jha,
    • Kaustuv Basu,
    • Josue Gomez-Blanco,
    • Javier Vargas,
    • and Joaquin Ortega
    RNA December 2020 26: 2017-2030; Published in Advance September 28, 2020, doi:10.1261/rna.075846.120

  • Solution structure and RNA-binding of a minimal ProQ-homolog from Legionella pneumophila (Lpp1663)

    • Carina Immer,
    • Carolin Hacker,
    • and Jens Wöhnert
    RNA December 2020 26: 2031-2043; Published in Advance September 28, 2020, doi:10.1261/rna.077354.120

METHODS

  • Termi-Luc: a versatile assay to monitor full-protein release from ribosomes

    • Denis Susorov,
    • Shawn Egri,
    • and Andrei A. Korostelev
    RNA December 2020 26: 2044-2050; Published in Advance August 14, 2020, doi:10.1261/rna.076588.120
    OPEN ACCESS ARTICLE

  • Chemical shifts-based similarity restraints improve accuracy of RNA structures determined via NMR

    • Chad Lawrence and
    • Alexander Grishaev
    RNA December 2020 26: 2051-2061; Published in Advance September 11, 2020, doi:10.1261/rna.074617.119

  • Single-pass transcription by T7 RNA polymerase

    • Luiz F.M. Passalacqua,
    • Armine I. Dingilian,
    • and Andrej Lupták
    RNA December 2020 26: 2062-2071; Published in Advance September 21, 2020, doi:10.1261/rna.076778.120

REVIEWER INDEX

AUTHOR INDEX

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This Issue

December 2020; 26 (12)
Cover
  1. BIOINFORMATICS
  2. REPORTS
  3. ARTICLES
  4. METHODS
  5. REVIEWER INDEX
  6. AUTHOR INDEX

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