Table of Contents

BIOINFORMATICS

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Data-directed RNA secondary structure prediction using probabilistic modeling
- Fei Deng,
- Mirko Ledda,
- Sana Vaziri,
- and Sharon Aviran
RNA August 2016 22: 1109-1119; Published in Advance June 1, 2016, doi:10.1261/rna.055756.115
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Evaluation of microRNA alignment techniques
- Mark Ziemann,
- Antony Kaspi,
- and Assam El-Osta
RNA August 2016 22: 1120-1138; Published in Advance June 9, 2016, doi:10.1261/rna.055509.115

REPORTS

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Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity
- Katharina Nakel,
- Fabien Bonneau,
- Claire Basquin,
- Bianca Habermann,
- Christian R. Eckmann,
- and Elena Conti
RNA August 2016 22: 1139-1145; Published in Advance June 10, 2016, doi:10.1261/rna.056598.116
OPEN ACCESS ARTICLE
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The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA
- Guowei Wu,
- Mohamed K. Radwan,
- Mu Xiao,
- Hironori Adachi,
- Jason Fan,
- and Yi-Tao Yu
RNA August 2016 22: 1146-1152; Published in Advance June 7, 2016, doi:10.1261/rna.056796.116
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Eukaryote-specific rRNA expansion segments function in ribosome biogenesis
- Madhumitha Ramesh and
- John L. Woolford, Jr.
RNA August 2016 22: 1153-1162; Published in Advance June 17, 2016, doi:10.1261/rna.056705.116
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Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E
- Shaheen Sulthana,
- Georgeta N. Basturea,
- and Murray P. Deutscher
RNA August 2016 22: 1163-1171; Published in Advance June 13, 2016, doi:10.1261/rna.056275.116
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Multiple determinants of splicing repression activity in the polypyrimidine tract binding proteins, PTBP1 and PTBP2
- Niroshika M. Keppetipola,
- Kyu-Hyeon Yeom,
- Adrian L. Hernandez,
- Tessa Bui,
- Shalini Sharma,
- and Douglas L. Black
RNA August 2016 22: 1172-1180; Published in Advance June 10, 2016, doi:10.1261/rna.057505.116
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Host miRNA degradation by Herpesvirus saimiri small nuclear RNA requires an unstructured interacting region
- Paulina Pawlica,
- Walter N. Moss,
- and Joan A. Steitz
RNA August 2016 22: 1181-1189; Published in Advance June 22, 2016, doi:10.1261/rna.054817.115

ARTICLES

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The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNA^Tyr
- Raphael R.S. Lopes,
- Gilbert de O. Silveira,
- Roberta Eitler,
- Raphael S. Vidal,
- Alan Kessler,
- Scott Hinger,
- Zdeněk Paris,
- Juan D. Alfonzo,
- and Carla Polycarpo
RNA August 2016 22: 1190-1199; Published in Advance June 9, 2016, doi:10.1261/rna.056242.116
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Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy
- Nichole Eshleman,
- Guangbo Liu,
- Kaitlyn McGrath,
- Roy Parker,
- and J. Ross Buchan
RNA August 2016 22: 1200-1214; Published in Advance June 1, 2016, doi:10.1261/rna.057224.116
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Transcriptomic comparison of Drosophila snRNP biogenesis mutants reveals mutant-specific changes in pre-mRNA processing: implications for spinal muscular atrophy
- Eric L. Garcia,
- Ying Wen,
- Kavita Praveen,
- and A. Gregory Matera
RNA August 2016 22: 1215-1227; Published in Advance June 6, 2016, doi:10.1261/rna.057208.116
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Analysis of the human immunodeficiency virus-1 RNA packageome
- Matthew J. Eckwahl,
- Helene Arnion,
- Siarhei Kharytonchyk,
- Trinity Zang,
- Paul D. Bieniasz,
- Alice Telesnitsky,
- and Sandra L. Wolin
RNA August 2016 22: 1228-1238; Published in Advance May 31, 2016, doi:10.1261/rna.057299.116
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Nucleotide specificity of the human terminal nucleotidyltransferase Gld2 (TUT2)
- Christina Z. Chung,
- David Hyung Suk Jo,
- and Ilka U. Heinemann
RNA August 2016 22: 1239-1249; Published in Advance June 9, 2016, doi:10.1261/rna.056077.116
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G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme
- Alexander Hirschi,
- William J. Martin,
- Zigmund Luka,
- Lioudmila V. Loukachevitch,
- and Nicholas J. Reiter
RNA August 2016 22: 1250-1260; Published in Advance June 8, 2016, doi:10.1261/rna.057265.116
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mRNA bound to the 30S subunit is a HigB toxin substrate
- Marc A. Schureck,
- Tatsuya Maehigashi,
- Stacey J. Miles,
- Jhomar Marquez,
- and Christine M. Dunham
RNA August 2016 22: 1261-1270; Published in Advance June 15, 2016, doi:10.1261/rna.056218.116
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Transferrin receptor mRNA interactions contributing to iron homeostasis
- Dhwani N. Rupani and
- Gregory J. Connell
RNA August 2016 22: 1271-1282; Published in Advance June 15, 2016, doi:10.1261/rna.056184.116

BIOINFORMATICS

Data-directed RNA secondary structure prediction using probabilistic modeling

Evaluation of microRNA alignment techniques

REPORTS

Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity

The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA

Eukaryote-specific rRNA expansion segments function in ribosome biogenesis

Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E

Multiple determinants of splicing repression activity in the polypyrimidine tract binding proteins, PTBP1 and PTBP2

Host miRNA degradation by Herpesvirus saimiri small nuclear RNA requires an unstructured interacting region

ARTICLES

The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNA^Tyr

Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy

Transcriptomic comparison of Drosophila snRNP biogenesis mutants reveals mutant-specific changes in pre-mRNA processing: implications for spinal muscular atrophy

Analysis of the human immunodeficiency virus-1 RNA packageome

Nucleotide specificity of the human terminal nucleotidyltransferase Gld2 (TUT2)

G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme

mRNA bound to the 30S subunit is a HigB toxin substrate

Transferrin receptor mRNA interactions contributing to iron homeostasis

This Issue

Current Issue

In This Issue

Table of Contents

BIOINFORMATICS

Data-directed RNA secondary structure prediction using probabilistic modeling

Evaluation of microRNA alignment techniques

REPORTS

Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity

The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA

Eukaryote-specific rRNA expansion segments function in ribosome biogenesis

Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E

Multiple determinants of splicing repression activity in the polypyrimidine tract binding proteins, PTBP1 and PTBP2

Host miRNA degradation by Herpesvirus saimiri small nuclear RNA requires an unstructured interacting region

ARTICLES

The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNATyr

Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy

Transcriptomic comparison of Drosophila snRNP biogenesis mutants reveals mutant-specific changes in pre-mRNA processing: implications for spinal muscular atrophy

Analysis of the human immunodeficiency virus-1 RNA packageome

Nucleotide specificity of the human terminal nucleotidyltransferase Gld2 (TUT2)

G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme

mRNA bound to the 30S subunit is a HigB toxin substrate

Transferrin receptor mRNA interactions contributing to iron homeostasis

This Issue

Current Issue

In This Issue

The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNA^Tyr