chr	start	end	name	score	strand	gc	gc_bin	chrom	feature_id	feature_bin	feature_type_top	feature_types	gene_name	gene_id	transcript_ids	gene_type_top	transcript_type_top	gene_types	transcript_types	input_sum	clip_sum	enrichment_n	enrichment_l2or_min	enrichment_l2or_mean	enrichment_l2or_max	p_max	p_min	q_max	q_min
chr17	6600958	6601056	8857777	0	-	0.540816	(0.526,0.57]	chr17	846894	1	INTRON	INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000570790.5:ENST00000572370.5:ENST00000542826.6:ENST00000575027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	403	2	9.67085	9.67688	9.68291	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	37136593	37136693	10031375	0	-	0.65	(0.629,1]	chr22	999467	2	SS3_PROX	SS3_PROX:INTRON	IL2RB	ENSG00000100385.14	ENST00000216223.10:ENST00000453962.5	protein_coding	protein_coding	protein_coding	protein_coding	0	499	2	9.35821	9.447745000000001	9.53728	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	79672501	79672600	7217764	0	-	0.474747	(0.459,0.49]	chr12	665706	37	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1:ENST00000547571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	291	2	9.29821	9.348115	9.39802	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	13115499	13115592	9066296	0	+	0.473118	(0.459,0.49]	chr18	876314	9	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5:ENST00000589993.5:ENST00000540847.6:ENST00000508539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	271	2	9.16193	9.244835	9.32774	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819593	91819693	5658283	0	-	0.43	(0.424,0.459]	chr9	506482	434	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	1552	2	9.00377	9.154589999999999	9.30541	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	29439073	29439173	5825733	0	+	0.4	(0.392,0.424]	chr10	523724	168	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	193	2	9.0565	9.113225	9.16995	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	133955891	133955991	6782615	0	-	0.85	(0.629,1]	chr11	619316	38	INTRON	INTRON	IGSF9B	ENSG00000080854.16	ENST00000533871.8:ENST00000321016.12	protein_coding	protein_coding	protein_coding	protein_coding	0	365	2	8.92066	8.998285	9.07591	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	52637402	52637501	8175096	0	-	0.424242	(0.392,0.424]	chr15	758343	232	INTRON	INTRON	FAM214A	ENSG00000047346.13	ENST00000619572.5:ENST00000534964.6:ENST00000261844.11:ENST00000546305.6:ENST00000399202.8:ENST00000562135.5:ENST00000566768.5:ENST00000561490.5:ENST00000561543.5:ENST00000568863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	171	2	8.89561	8.93713	8.97865	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	61980707	61980806	8979532	0	-	0.484848	(0.459,0.49]	chr17	865059	75	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	8.62613	8.6851	8.74407	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	128186473	128186572	5744719	0	-	0.515152	(0.49,0.526]	chr9	515093	3	INTRON	INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	8.42776	8.643075	8.85839	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	67953416	67953516	7669955	0	+	0.41	(0.392,0.424]	chr14	705758	442	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	205	2	8.22121	8.623535	9.02586	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	120646202	120646301	5714585	0	-	0.393939	(0.392,0.424]	chr9	512304	231	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	8.60085	8.61908	8.63731	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24188655	24188755	10104775	0	+	0.36	(0.32,0.36]	chrX	1007471	85	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	170	2	7.86724	8.568775	9.27031	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20424119	20424219	6842605	0	+	0.29	[0,0.32]	chr12	625044	535	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	108	2	8.20706	8.512545	8.81803	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	90534043	90534143	8080342	0	+	0.43	(0.424,0.459]	chr15	747246	29	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	139	2	8.24792	8.48868	8.72944	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	11584716	11584772	937055	0	+	0.410714	(0.392,0.424]	chr2	102867	2	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	5	442	2	7.72668	8.460329999999999	9.19398	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819693	91819793	5658284	0	-	0.39	(0.36,0.392]	chr9	506482	435	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	162	2	7.908	8.40628	8.90456	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	128654848	128654947	5745861	0	-	0.393939	(0.392,0.424]	chr9	515359	136	INTRON	INTRON	DYNC2I2	ENSG00000119333.12	ENST00000372715.7:ENST00000419989.2:ENST00000451652.5:ENST00000480613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	118	2	8.39511	8.405025	8.41494	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	165985183	165985283	2783767	0	+	0.44	(0.424,0.459]	chr4	263901	649	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	282	2	8.1929	8.354115	8.51533	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	15487598	15487698	8880054	0	-	0.44	(0.424,0.459]	chr17	849615	120	INTRON	INTRON	CDRT4	ENSG00000239704.11	ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	8.29508	8.349440000000001	8.4038	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	69600422	69600522	8422432	0	+	0.4	(0.392,0.424]	chr16	788942	315	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	168	2	7.70021	8.33943	8.97865	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	19833325	19833425	10290924	0	-	0.57	(0.526,0.57]	chrX	1023468	337	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	8.22325	8.33575	8.44825	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	45196727	45196822	7614531	0	+	0.452632	(0.424,0.459]	chr14	700582	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696649.1:ENST00000696648.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1:ENST00000554809.6:ENST00000696659.1:ENST00000696686.1:ENST00000696665.1:ENST00000557110.2:ENST00000555484.2:ENST00000696645.1:ENST00000696651.1:ENST00000553551.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	8.18212	8.315529999999999	8.44894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	179035097	179035197	2501074	0	-	0.41	(0.392,0.424]	chr3	239331	37	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1:ENST00000311417.7:ENST00000432729.5:ENST00000414084.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	8.13294	8.286235	8.43953	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	78878108	78878208	6970934	0	+	0.4	(0.392,0.424]	chr12	637564	88	INTRON	INTRON	SYT1	ENSG00000067715.14	ENST00000393240.7:ENST00000261205.9:ENST00000457153.6:ENST00000552074.5:ENST00000549454.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	554	2	8.16009	8.24786	8.33563	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	88425089	88425188	5420194	0	+	0.484848	(0.459,0.49]	chr9	483987	58	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	135	2	8.10851	8.239505000000001	8.3705	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819793	91819893	5658285	0	-	0.4	(0.392,0.424]	chr9	506482	436	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	156	2	7.78966	8.233474999999999	8.67729	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819992	91820092	5658287	0	-	0.51	(0.49,0.526]	chr9	506482	438	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	223	2	7.57206	8.228195	8.88433	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	50524345	50524445	7822683	0	-	0.39	(0.36,0.392]	chr14	720425	191	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000682126.1:ENST00000013125.9:ENST00000557390.6:ENST00000554091.5:ENST00000555216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	8.15802	8.225035	8.29205	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	27662411	27662508	6855011	0	+	0.391753	(0.36,0.392]	chr12	626145	11	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000542629.5:ENST00000537261.1	protein_coding	protein_coding	protein_coding	protein_coding	7	399	2	7.28732	8.193775	9.10023	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	131419683	131419783	4549971	0	+	0.4	(0.392,0.424]	chr7	409261	46	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	531	2	8.00283	8.191585	8.38034	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28445072	28445172	10005754	0	-	0.31	[0,0.32]	chr22	996542	21	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	7.76917	8.1868	8.60443	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	183890616	183890716	2806033	0	+	0.41	(0.392,0.424]	chr4	265321	364	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	8.13294	8.16722	8.2015	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	74209777	74209876	10376453	0	-	0.323232	(0.32,0.36]	chrX	1030040	55	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2	lncRNA	lncRNA	lncRNA	lncRNA	7	418	2	7.78134	8.164475	8.54761	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	54217897	54217997	1885437	0	+	0.48	(0.459,0.49]	chr3	192350	200	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000492460.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	8.00917	8.154834999999999	8.3005	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34804954	34805054	9730429	0	-	0.36	(0.32,0.36]	chr20	963275	120	INTRON	INTRON	NCOA6	ENSG00000198646.14	ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	7.76506	8.12283	8.4806	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	50124501	50124601	7528044	0	-	0.74	(0.629,1]	chr13	692401	426	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000425586.5:ENST00000662092.1:ENST00000666359.2	lncRNA	lncRNA	lncRNA	lncRNA	1	316	2	7.45639	8.112214999999999	8.76804	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	33593092	33593189	2231268	0	-	0.412371	(0.392,0.424]	chr3	215919	2	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	7.9847	8.073055	8.16141	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	15528712	15528811	8880470	0	-	0.525253	(0.49,0.526]	chr17	849632	117	INTRON	INTRON	TVP23C	ENSG00000175106.17	ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	7.9102	8.038305000000001	8.16641	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46221383	46221483	8949624	0	-	0.45	(0.424,0.459]	chr17	860889	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2:ENST00000639520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	226	2	7.8853	8.03601	8.18672	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	79017406	79017506	2352650	0	-	0.44	(0.424,0.459]	chr3	227145	781	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	7.59092	8.03028	8.46964	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	138535897	138535994	2450167	0	-	0.278351	[0,0.32]	chr3	235172	30	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	7.86543	8.01972	8.1740100000000009	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	9565328	9565426	9179204	0	-	0.357143	(0.32,0.36]	chr18	884503	14	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	7.88651	8.012655	8.1388	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	45624215	45624314	8725640	0	+	0.434343	(0.424,0.459]	chr17	829019	18	INTRON	INTRON	LINC02210	ENSG00000204650.14	ENST00000585118.5:ENST00000591271.5:ENST00000582491.5:ENST00000585122.5:ENST00000583740.5:ENST00000455565.5:ENST00000580220.2	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	1	147	2	7.45739	7.996035	8.53468	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	35353543	35353643	3764502	0	+	0.31	[0,0.32]	chr6	344034	60	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	2	136	2	7.03624	7.9956700000000005	8.9551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	27911358	27911458	964113	0	+	0.35	(0.32,0.36]	chr2	105608	163	INTRON	INTRON	MRPL33:BABAM2	ENSG00000243147.8:ENSG00000158019.21	ENST00000448427.1:ENST00000436924.5:ENST00000344773.6:ENST00000379624.6:ENST00000603461.1:ENST00000496951.1:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7:ENST00000604932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	77	2	7.80669	7.9900649999999995	8.17344	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	70147421	70147514	10154122	0	+	0.408602	(0.392,0.424]	chrX	1011875	2	INTRON	INTRON	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	4	213	2	6.88373	7.977655	9.07158	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	109675952	109676052	2709696	0	+	0.4	(0.392,0.424]	chr4	257834	112	INTRON	INTRON	MCUB	ENSG00000005059.16	ENST00000472310.5:ENST00000394650.7:ENST00000452915.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	87	2	7.77593	7.95937	8.14281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	178101485	178101585	358651	0	+	0.37	(0.36,0.392]	chr1	39070	64	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	7.29939	7.941385	8.58338	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	22855555	22855655	7925228	0	+	0.41	(0.392,0.424]	chr15	731440	19	INTRON	INTRON	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	7.64741	7.918365	8.18932	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	176057002	176057101	809384	0	-	0.272727	[0,0.32]	chr1	90106	103	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	7.67987	7.910025000000001	8.14018	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	9836902	9837002	9059184	0	+	0.49	(0.459,0.49]	chr18	875444	209	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2:ENST00000583921.5:ENST00000577796.5:ENST00000577371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	105	2	7.84635	7.87985	7.91335	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	44501700	44501800	9748187	0	-	0.46	(0.459,0.49]	chr20	965703	4	SS3_PROX	SS3_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	2	198	2	6.92298	7.876289999999999	8.8296	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	100237269	100237369	6235656	0	-	0.4	(0.392,0.424]	chr10	557705	3	SS3_PROX	SS3_PROX:INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	1047	2	7.72114	7.86004	7.99894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	52549333	52549432	619254	0	-	0.434343	(0.424,0.459]	chr1	69001	103	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	7.51412	7.834685	8.15525	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	61113639	61113739	165240	0	+	0.38	(0.36,0.392]	chr1	19203	14	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	229	2	7.2937	7.814210000000001	8.33472	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	222831641	222831740	437218	0	+	0.424242	(0.392,0.424]	chr1	47238	2	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000450784.5:ENST00000674736.1:ENST00000657452.2:ENST00000426045.5:ENST00000675850.1:ENST00000674709.1:ENST00000676412.1:ENST00000676139.1:ENST00000442171.6:ENST00000444858.5:ENST00000435378.6:ENST00000495684.2:ENST00000434872.2:ENST00000675039.1:ENST00000457636.5:ENST00000675961.1:ENST00000676303.1:ENST00000661663.1:ENST00000669958.1:ENST00000420335.5:ENST00000663328.2:ENST00000654502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	172	2	7.71303	7.80159	7.89015	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	172656109	172656209	3391471	0	+	0.47	(0.459,0.49]	chr5	311146	143	INTRON	INTRON	NEURL1B	ENSG00000214357.9	ENST00000369800.6:ENST00000520919.5:ENST00000522853.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	7.45616	7.77017	8.08418	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20424219	20424319	6842606	0	+	0.33	(0.32,0.36]	chr12	625044	536	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	553	2	7.46361	7.7510449999999995	8.03848	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	183475195	183475295	375199	0	+	0.37	(0.36,0.392]	chr1	40733	9	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	127	2	6.94497	7.75069	8.55641	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	1387735	1387835	8836583	0	-	0.51	(0.49,0.526]	chr17	843210	176	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	242	2	7.67225	7.74132	7.81039	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	184393664	184393763	3097325	0	-	0.434343	(0.424,0.459]	chr4	286591	8	INTRON	INTRON	IRF2	ENSG00000168310.12	ENST00000696840.1:ENST00000393593.8:ENST00000696846.1:ENST00000696845.1:ENST00000696844.1:ENST00000502750.2:ENST00000696843.1:ENST00000696842.1:ENST00000696841.1:ENST00000696852.1:ENST00000696853.1:ENST00000696851.1:ENST00000696850.1:ENST00000696849.1:ENST00000510814.6:ENST00000505067.6:ENST00000696848.1:ENST00000504340.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	7.70078	7.72584	7.7509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	23274941	23275041	9189867	0	-	0.46	(0.459,0.49]	chr18	885664	481	INTRON	INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000578790.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	215	2	7.65473	7.71461	7.77449	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227311907	227312007	877147	0	-	0.36	(0.32,0.36]	chr1	97605	574	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	116	2	6.96965	7.713035	8.45642	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	47157474	47157574	8548857	0	-	0.34	(0.32,0.36]	chr16	805020	13	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	6.90555	7.70678	8.50801	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	10358161	10358260	3119901	0	+	0.434343	(0.424,0.459]	chr5	288981	31	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	151	2	7.09451	7.7063	8.31809	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	3682548	3682646	8497061	0	-	0.520408	(0.49,0.526]	chr16	796567	24	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	7.666	7.68534	7.70468	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	194476517	194476617	2522222	0	-	0.48	(0.459,0.49]	chr3	241530	84	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	139	2	7.2786	7.682055	8.08551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	205737197	205737296	846205	0	-	0.343434	(0.32,0.36]	chr1	94185	72	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	7.48637	7.678065	7.86976	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	30844539	30844636	8692274	0	+	0.371134	(0.36,0.392]	chr17	822973	1	SS3_PROX	SS3_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	66	2	7.43597	7.66292	7.88987	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	10873419	10873519	9284985	0	+	0.55	(0.526,0.57]	chr19	897126	11	INTRON	INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	7.55136	7.63786	7.72436	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	44895335	44895435	9658700	0	+	0.38	(0.36,0.392]	chr20	954169	72	INTRON	INTRON	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000428262.1:ENST00000445830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	7.16375	7.629630000000001	8.09551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	137746549	137746649	3611447	0	-	0.41	(0.392,0.424]	chr5	327750	10	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	7.30047	7.59063	7.88079	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	155943031	155943130	2047767	0	+	0.515152	(0.49,0.526]	chr3	204618	55	UTR3	UTR3:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	7.25471	7.58376	7.91281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	178144508	178144608	3404265	0	+	0.5	(0.49,0.526]	chr5	312614	4	SS5_PROX	SS5_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000542098.2:ENST00000515360.5:ENST00000513162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	7.55956	7.582235000000001	7.60491	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	165709118	165709218	4267829	0	-	0.67	(0.629,1]	chr6	386874	460	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	218	2	6.81487	7.578155000000001	8.34144	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	31966992	31967091	8697938	0	+	0.454545	(0.424,0.459]	chr17	823664	9	EXON_MRNA	EXON_MRNA:INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1:ENST00000494429.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	109	2	6.97124	7.572705	8.17417	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	132471772	132471872	10434984	0	-	0.4	(0.392,0.424]	chrX	1034956	311	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	7.51484	7.567705	7.62057	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	98939495	98939594	3262675	0	+	0.313131	[0,0.32]	chr5	300671	86	INTRON	INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	7.21194	7.560125	7.90831	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	179003260	179003360	2500749	0	-	0.45	(0.424,0.459]	chr3	239303	204	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1	protein_coding	protein_coding	protein_coding	protein_coding	4	234	2	7.09034	7.553325000000001	8.01631	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	13134699	13134798	5572852	0	-	0.444444	(0.424,0.459]	chr9	499829	9	EXON_MRNA	EXON_MRNA:INTRON	MPDZ	ENSG00000107186.17	ENST00000319217.12:ENST00000541718.5:ENST00000539508.5:ENST00000319198.10:ENST00000438511.5:ENST00000545857.5:ENST00000538841.5:ENST00000536827.5:ENST00000447879.6:ENST00000542806.5:ENST00000546205.5:ENST00000535169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	7.12824	7.5425249999999995	7.95681	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	57093649	57093747	3797631	0	+	0.285714	[0,0.32]	chr6	348483	2	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000508603.5:ENST00000370706.9:ENST00000491832.6:ENST00000370710.10:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000510989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	6.91222	7.52705	8.14188	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	87484629	87484729	3831259	0	+	0.47	(0.459,0.49]	chr6	351055	67	INTRON	INTRON	SLC35A1	ENSG00000164414.19	ENST00000464978.5:ENST00000369556.7:ENST00000369557.9:ENST00000369552.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	7.41984	7.524805	7.62977	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	177161288	177161388	2499641	0	-	0.39	(0.36,0.392]	chr3	239252	3	SS3_PROX	SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	161	2	7.0278	7.517115	8.00643	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	51422629	51422729	7528766	0	-	0.4	(0.392,0.424]	chr13	692503	2	SS5_PROX	SS5_PROX:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6:ENST00000491723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	204	2	6.9335	7.51283	8.09216	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	76438438	76438538	9015657	0	-	0.55	(0.526,0.57]	chr17	870480	325	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	209	2	7.48635	7.51154	7.53673	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	1878867	1878967	495669	0	-	0.52	(0.49,0.526]	chr1	53110	388	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	283	2	5.93795	7.50737	9.07679	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	63491258	63491358	6149177	0	-	0.34	(0.32,0.36]	chr10	550104	254	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	55	2	7.26532	7.501205000000001	7.73709	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	42239269	42239369	8141282	0	-	0.5	(0.49,0.526]	chr15	753825	2	SS5_PROX	SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	7.46492	7.486525	7.50813	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	134903139	134903239	4560879	0	+	0.45	(0.424,0.459]	chr7	409577	32	INTRON	INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000454108.5:ENST00000361675.7:ENST00000430085.5:ENST00000482470.5:ENST00000361901.6:ENST00000445569.6:ENST00000435928.1:ENST00000393118.6:ENST00000443197.5:ENST00000424922.5:ENST00000495522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	7.34518	7.47241	7.59964	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	1600525	1600624	3414701	0	-	0.383838	(0.36,0.392]	chr5	314324	3	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	57	2	7.38184	7.4710350000000005	7.56023	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	53395984	53396081	9383637	0	+	0.391753	(0.36,0.392]	chr19	915193	4	INTRON	INTRON	ZNF765	ENSG00000196417.13	ENST00000504146.5:ENST00000504235.5:ENST00000396408.8:ENST00000507045.5:ENST00000505866.1:ENST00000594030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	7.26709	7.45853	7.64997	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	63715101	63715201	7847346	0	-	0.51	(0.49,0.526]	chr14	722525	161	INTRON	INTRON	SGPP1	ENSG00000126821.8	ENST00000247225.7	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	7.21649	7.45605	7.69561	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	46109947	46110047	601862	0	-	0.44	(0.424,0.459]	chr1	67526	288	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	7.07684	7.455655	7.83447	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	41181675	41181775	9816755	0	+	0.54	(0.526,0.57]	chr21	973271	127	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	7.45237	7.454815	7.45726	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	35413047	35413147	5836595	0	+	0.37	(0.36,0.392]	chr10	524506	178	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	191	2	7.32922	7.454395	7.57957	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	57438595	57438695	8750286	0	+	0.36	(0.32,0.36]	chr17	833029	61	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	115	2	7.32795	7.448075	7.5682	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	61150826	61150926	165614	0	+	0.5	(0.49,0.526]	chr1	19206	179	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	131	2	6.58819	7.447744999999999	8.3073	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	38251512	38251612	9343230	0	+	0.6	(0.57,0.629]	chr19	906826	70	INTRON	INTRON	SPINT2	ENSG00000167642.13	ENST00000590510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	7.41008	7.444715	7.47935	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	2958091	2958190	9555123	0	+	0.414141	(0.392,0.424]	chr20	946019	20	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	7.2626	7.441585	7.62057	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	53031819	53031918	9673197	0	+	0.40404	(0.392,0.424]	chr20	955958	581	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	7	298	2	7.01748	7.44132	7.86516	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	29439173	29439273	5825734	0	+	0.52	(0.49,0.526]	chr10	523724	169	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	195	2	7.36312	7.43051	7.4979	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	44438493	44438593	7961994	0	+	0.38	(0.36,0.392]	chr15	736642	100	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000558791.5:ENST00000260327.9:ENST00000560834.1:ENST00000558966.5:ENST00000559793.5:ENST00000558968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	102	2	6.64632	7.42376	8.2012	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	41097478	41097577	9951053	0	+	0.353535	(0.32,0.36]	chr22	989833	40	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	7.27467	7.421435000000001	7.5682	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	31577781	31577881	9933621	0	+	0.55	(0.526,0.57]	chr22	986727	20	INTRON	INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000476010.5:ENST00000484806.1:ENST00000452250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	7.35598	7.421055	7.48613	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	46704346	46704446	1018502	0	+	0.38	(0.36,0.392]	chr2	109833	45	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	7.32561	7.419395	7.51318	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	75641601	75641700	3818840	0	+	0.323232	(0.32,0.36]	chr6	349882	5	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	7.36983	7.40202	7.43421	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	21652467	21652567	5811721	0	+	0.25	[0,0.32]	chr10	522872	3	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	7.39519	7.40175	7.40831	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	56835328	56835428	3177529	0	+	0.57	(0.526,0.57]	chr5	293505	189	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	7	439	2	6.89763	7.399885	7.90214	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	1372389	1372487	9261486	0	+	0.295918	[0,0.32]	chr19	892329	4	EXON_MRNA	EXON_MRNA:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1:ENST00000586067.1:ENST00000591627.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	6.91501	7.39659	7.87817	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	15017359	15017459	9843177	0	-	0.38	(0.36,0.392]	chr21	976988	25	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	7.25173	7.395110000000001	7.53849	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	98596805	98596897	6995833	0	+	0.445652	(0.424,0.459]	chr12	639012	6	INTRON	INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	7.07684	7.388809999999999	7.70078	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28479768	28479868	10006101	0	-	0.4	(0.392,0.424]	chr22	996542	368	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	4	187	2	6.83834	7.388115	7.93789	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	51422829	51422929	7528768	0	-	0.35	(0.32,0.36]	chr13	692503	4	SS5_PROX	SS5_PROX:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6:ENST00000491723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	159	2	6.7706	7.385425	8.00025	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35800401	35800500	10026321	0	-	0.363636	(0.36,0.392]	chr22	998771	183	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	7.07291	7.382865000000001	7.69282	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20551361	20551461	6843878	0	+	0.29	[0,0.32]	chr12	625044	1808	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	272	7780	2	7.37985	7.381515	7.38318	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	4523692	4523792	1751412	0	+	0.36	(0.32,0.36]	chr3	179435	22	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	7.32384	7.376105	7.42837	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	43412906	43413004	6379555	0	+	0.346939	(0.32,0.36]	chr11	571495	50	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	7.14064	7.36581	7.59098	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	41759772	41759863	7953176	0	+	0.417582	(0.392,0.424]	chr15	735083	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000564190.1:ENST00000568255.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	7.35078	7.3598099999999995	7.36884	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	156040589	156040688	780156	0	-	0.454545	(0.424,0.459]	chr1	86361	31	INTRON	INTRON	UBQLN4	ENSG00000160803.8	ENST00000368309.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	7.23919	7.356445	7.4737	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	9557564	9557664	10078341	0	+	0.44	(0.424,0.459]	chrX	1005250	139	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	94	2	6.94332	7.3562449999999995	7.76917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	85039910	85040010	8068916	0	+	0.45	(0.424,0.459]	chr15	745864	572	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	6.69809	7.355449999999999	8.01281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	48443260	48443359	1025940	0	+	0.515152	(0.49,0.526]	chr2	110335	14	INTRON	INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5:ENST00000421486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	7.29194	7.348165	7.40439	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35919853	35919953	10027521	0	-	0.45	(0.424,0.459]	chr22	998794	794	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	7.1538	7.335705000000001	7.51761	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	37055413	37055511	3151710	0	+	0.326531	(0.32,0.36]	chr5	291335	25	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000514335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	131	2	6.94296	7.3241700000000005	7.70538	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	24522884	24522984	2865122	0	-	0.39	(0.36,0.392]	chr4	270032	22	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	76	2	6.75382	7.32105	7.88828	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	55812288	55812388	7174846	0	-	0.33	(0.32,0.36]	chr12	661173	82	INTRON	INTRON	SARNP	ENSG00000205323.9	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552080.1:ENST00000552207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	6.87293	7.318995	7.76506	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	151211924	151212023	297278	0	+	0.444444	(0.424,0.459]	chr1	31729	124	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	136	2	7.23868	7.308365	7.37805	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	31104265	31104365	8694619	0	+	0.35	(0.32,0.36]	chr17	823257	85	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	6.70856	7.297535	7.88651	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	42739941	42740040	8935444	0	-	0.383838	(0.36,0.392]	chr17	858552	77	INTRON	INTRON	EZH1	ENSG00000108799.13	ENST00000415827.6:ENST00000428826.7:ENST00000592743.5:ENST00000588897.5:ENST00000590078.5:ENST00000585893.5:ENST00000586103.5:ENST00000585912.5:ENST00000591330.5:ENST00000586382.5:ENST00000586867.5:ENST00000586089.5:ENST00000593214.5:ENST00000592492.5:ENST00000590082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	6.85517	7.29481	7.73445	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	27584514	27584614	961703	0	+	0.33	(0.32,0.36]	chr2	105326	4	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	7.26532	7.287065	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	150837869	150837966	763988	0	-	0.391753	(0.36,0.392]	chr1	82943	10	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	92	2	6.47852	7.287015	8.09551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	7577964	7578063	4304136	0	+	0.343434	(0.32,0.36]	chr7	390179	34	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	6.77168	7.2771799999999995	7.78268	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	43504610	43504710	3168061	0	+	0.44	(0.424,0.459]	chr5	292419	140	INTRON	INTRON	ENSG00000249492	ENSG00000249492.3	ENST00000505645.1	lncRNA	lncRNA	lncRNA	lncRNA	1	89	2	6.66652	7.2771550000000005	7.88779	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34434287	34434387	9632966	0	+	0.32	[0,0.32]	chr20	950773	94	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	6.62802	7.268165	7.90831	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	41844552	41844652	3457240	0	-	0.41	(0.392,0.424]	chr5	317906	10	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	7.01866	7.26675	7.51484	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	120677968	120678068	5714904	0	-	0.32	[0,0.32]	chr9	512310	180	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	6.75615	7.26589	7.77563	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	214799615	214799715	1686274	0	-	0.37	(0.36,0.392]	chr2	173253	21	INTRON	INTRON	BARD1	ENSG00000138376.11	ENST00000260947.9:ENST00000617164.5:ENST00000619009.5:ENST00000613374.5:ENST00000613706.5:ENST00000421162.2:ENST00000613192.2:ENST00000620057.4:ENST00000455743.5:ENST00000471787.1:ENST00000479904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	6.63885	7.263565	7.88828	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	41826786	41826885	3457058	0	-	0.434343	(0.424,0.459]	chr5	317889	190	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000509987.1:ENST00000514723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	6.89387	7.26143	7.62899	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	77635091	77635191	6658653	0	-	0.3	[0,0.32]	chr11	610570	48	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	6.91431	7.261225	7.60814	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	74770854	74770954	7702854	0	+	0.34	(0.32,0.36]	chr14	707961	61	INTRON	INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	7.20433	7.25657	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	89896127	89896227	231200	0	+	0.53	(0.526,0.57]	chr1	23061	491	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	144	2	6.24706	7.256500000000001	8.26594	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	57497261	57497360	6924472	0	+	0.40404	(0.392,0.424]	chr12	633330	63	INTRON	INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551892.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	238	2	6.94402	7.253855	7.56369	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	151212123	151212222	297280	0	+	0.424242	(0.392,0.424]	chr1	31729	126	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	7.20639	7.25343	7.30047	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	210571502	210571601	1296046	0	+	0.30303	[0,0.32]	chr2	134054	143	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	6.99611	7.25085	7.50559	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	182416479	182416579	1636386	0	-	0.31	[0,0.32]	chr2	168577	1517	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	96	2	7.2404	7.2496849999999995	7.25897	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	12663663	12663762	9182708	0	-	0.282828	[0,0.32]	chr18	884942	11	INTRON	INTRON	CEP76	ENSG00000101624.11	ENST00000590143.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	44	2	7.21688	7.2462599999999995	7.27564	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	74727163	74727263	9150061	0	+	0.44	(0.424,0.459]	chr18	882036	857	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	4	142	2	5.84594	7.240639999999999	8.63534	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	45246542	45246642	7816854	0	-	0.32	[0,0.32]	chr14	719471	4	SS5_PROX	SS5_PROX:INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	6.61373	7.22513	7.83653	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	99841338	99841438	1935196	0	+	0.4	(0.392,0.424]	chr3	195309	229	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	7.01866	7.218915	7.41917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	111844718	111844818	7024198	0	+	0.5	(0.49,0.526]	chr12	642842	14	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	110	2	6.57211	7.216805000000001	7.8615	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	86904644	86904744	681362	0	-	0.34	(0.32,0.36]	chr1	74053	8	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	6.50396	7.207685	7.91141	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20623010	20623110	6844601	0	+	0.26	[0,0.32]	chr12	625071	12	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	703	2	7.03564	7.20256	7.36948	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	42910415	42910515	9822273	0	+	0.37	(0.36,0.392]	chr21	973982	15	UTR3	UTR3:EXON_MRNA	NDUFV3	ENSG00000160194.18	ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding	20	569	2	6.61788	7.2014700000000005	7.78506	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	31200178	31200278	7794775	0	-	0.37	(0.36,0.392]	chr14	717794	141	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000553616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	7.06859	7.197100000000001	7.32561	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	20077251	20077351	6345023	0	+	0.45	(0.424,0.459]	chr11	569000	3	SS3_PROX	SS3_PROX:INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5:ENST00000525322.5	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	6.53284	7.193805	7.85477	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	65928604	65928704	3195531	0	+	0.34	(0.32,0.36]	chr5	294720	14	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	7.14064	7.192865	7.24509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	9172831	9172931	513426	0	-	0.39	(0.36,0.392]	chr1	55157	206	INTRON	INTRON	MIR34AHG	ENSG00000228526.7	ENST00000635687.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	7.00199	7.191915	7.38184	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	125206285	125206385	5086149	0	+	0.37	(0.36,0.392]	chr8	455136	236	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	7.07578	7.191865	7.30795	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	1908106	1908194	9262467	0	+	0.727273	(0.629,1]	chr19	892590	2	UTR5	UTR5:EXON_MRNA:INTRON	SCAMP4:ADAT3	ENSG00000227500.10:ENSG00000213638.6	ENST00000452128.6:ENST00000414057.6:ENST00000460767.5:ENST00000316097.13:ENST00000489554.1:ENST00000329478.4:ENST00000409472.5:ENST00000454697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	7.02424	7.191375	7.35851	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	6212367	6212463	6545593	0	-	0.40625	(0.392,0.424]	chr11	594727	1	INTRON	INTRON	FHIP1B	ENSG00000051009.11	ENST00000265978.8:ENST00000449352.7:ENST00000529360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	6.95504	7.187105000000001	7.41917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	37195013	37195112	9643982	0	+	0.474747	(0.459,0.49]	chr20	952312	103	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	7.065	7.185035	7.30507	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	53734348	53734447	1446033	0	-	0.343434	(0.32,0.36]	chr2	149883	44	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5:ENST00000263634.8:ENST00000406625.6:ENST00000482829.5:ENST00000394717.3:ENST00000406687.5:ENST00000498475.2:ENST00000470916.5:ENST00000480522.5:ENST00000489508.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	6.71868	7.180009999999999	7.64134	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	98522150	98522241	2366912	0	-	0.450549	(0.424,0.459]	chr3	227619	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5:ENST00000503799.5:ENST00000508071.1:ENST00000513988.1:ENST00000502980.1:ENST00000506575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	6.40258	7.179695000000001	7.95681	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	79532523	79532622	7399406	0	+	0.272727	[0,0.32]	chr13	683575	112	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	7.14698	7.179460000000001	7.21194	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	137635606	137635706	5530226	0	+	0.5	(0.49,0.526]	chr9	498144	152	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	6.81751	7.179315000000001	7.54112	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	1963106	1963148	8492206	0	-	0.761905	(0.629,1]	chr16	795423	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	334	2	6.75059	7.176679999999999	7.60277	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	183890716	183890816	2806034	0	+	0.34	(0.32,0.36]	chr4	265321	365	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	7.00705	7.1707	7.33435	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	36180457	36180554	3148735	0	+	0.309278	[0,0.32]	chr5	290974	20	UTR3	UTR3:EXON_MRNA:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1:ENST00000678129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	6.66393	7.14671	7.62949	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	95630279	95630378	6212887	0	-	0.313131	[0,0.32]	chr10	555785	14	INTRON	INTRON	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	7.07541	7.146145	7.21688	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149612916	149613016	2470485	0	-	0.4	(0.392,0.424]	chr3	236997	368	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	6.8187	7.143245	7.46779	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24162042	24162142	10104502	0	+	0.44	(0.424,0.459]	chrX	1007439	2	SS5_PROX	SS5_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	6.80864	7.14171	7.47478	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	134903040	134903139	4560878	0	+	0.393939	(0.392,0.424]	chr7	409577	31	INTRON	INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000454108.5:ENST00000361675.7:ENST00000430085.5:ENST00000482470.5:ENST00000361901.6:ENST00000445569.6:ENST00000435928.1:ENST00000393118.6:ENST00000443197.5:ENST00000424922.5:ENST00000495522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	7.08694	7.1406	7.19426	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	73819213	73819304	6167769	0	-	0.626374	(0.57,0.629]	chr10	552557	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAMK2G	ENSG00000148660.21	ENST00000322680.7:ENST00000322635.7:ENST00000423381.6:ENST00000351293.7:ENST00000433289.5:ENST00000372765.5:ENST00000305762.11:ENST00000394762.7:ENST00000472912.5:ENST00000441192.2:ENST00000680035.1:ENST00000474131.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	6.95755	7.122705	7.28786	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	12365048	12365148	6823357	0	+	0.36	(0.32,0.36]	chr12	623883	33	INTRON	INTRON	BORCS5	ENSG00000165714.11	ENST00000314565.9:ENST00000542728.5:ENST00000543990.1:ENST00000298571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	6.93075	7.11978	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	134760450	134760548	5524921	0	+	0.540816	(0.526,0.57]	chr9	496560	18	INTRON	INTRON	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	5	292	2	7.003	7.118575	7.23415	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	54138267	54138367	1884638	0	+	0.56	(0.526,0.57]	chr3	192342	143	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	6.30633	7.1163050000000005	7.92628	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	37133483	37133583	7813044	0	-	0.4	(0.392,0.424]	chr14	719060	2581	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	7.0796	7.11375	7.1479	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	19578778	19578878	5131816	0	-	0.45	(0.424,0.459]	chr8	459305	121	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000454498.6:ENST00000695899.1:ENST00000695900.1:ENST00000522854.5:ENST00000519222.5:ENST00000523262.5:ENST00000517494.1:ENST00000520003.5:ENST00000524213.5:ENST00000517651.5:ENST00000523227.5:ENST00000522573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	99	2	6.20949	7.11115	8.01281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	49862849	49862914	7818598	0	-	0.615385	(0.57,0.629]	chr14	719844	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000282885	ENSG00000282885.2	ENST00000635177.1:ENST00000668702.1:ENST00000659240.1:ENST00000655317.1:ENST00000634923.1	lncRNA	lncRNA	lncRNA	lncRNA	58	3121	2	6.97669	7.110775	7.24486	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	4024950	4025050	4294250	0	+	0.48	(0.459,0.49]	chr7	388951	72	INTRON	INTRON	SDK1	ENSG00000146555.20	ENST00000404826.7:ENST00000389531.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	7.09081	7.102180000000001	7.11355	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	52640859	52640958	2284836	0	-	0.535354	(0.526,0.57]	chr3	223138	57	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	6.87152	7.09605	7.32058	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	96554964	96555059	7744063	0	+	0.368421	(0.36,0.392]	chr14	710929	16	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556283.1:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	6.77344	7.093825	7.41421	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	40273369	40273450	8714726	0	+	0.395062	(0.392,0.424]	chr17	826517	2	SS3_PROX	SS3_PROX:INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	6.11064	7.09245	8.07426	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	35470131	35470231	5837170	0	+	0.54	(0.526,0.57]	chr10	524519	143	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	6.43121	7.091205	7.7512	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	67792090	67792190	647087	0	-	0.45	(0.424,0.459]	chr1	71841	142	INTRON	INTRON	GNG12	ENSG00000172380.6	ENST00000370982.4:ENST00000494936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	7.01839	7.086095	7.1538	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	181894695	181894787	1228623	0	+	0.315217	[0,0.32]	chr2	128692	1	INTRON	INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000495248.5:ENST00000416081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	6.75615	7.08223	7.40831	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	49230859	49230959	7972647	0	+	0.43	(0.424,0.459]	chr15	737540	43	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000559963.5:ENST00000327171.7:ENST00000560654.5:ENST00000558775.5:ENST00000396509.6:ENST00000558956.5:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000558145.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	6.87221	7.08085	7.28949	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	60457367	60457464	8977251	0	-	0.309278	[0,0.32]	chr17	864722	6	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	7.07351	7.07446	7.07541	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155971655	155971754	779594	0	-	0.434343	(0.424,0.459]	chr1	86239	7	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	6.67242	7.0736	7.47478	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	68774494	68774593	5873311	0	+	0.616162	(0.57,0.629]	chr10	526955	10	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000265872.11:ENST00000539539.5:ENST00000540210.5:ENST00000543706.1:ENST00000398676.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	7.03709	7.071664999999999	7.10624	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	14170170	14170270	9296082	0	+	0.53	(0.526,0.57]	chr19	899144	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADGRL1-AS1	ENSG00000267169.2	ENST00000588387.2:ENST00000592086.1	lncRNA	lncRNA	lncRNA	lncRNA	1	100	2	6.43121	7.0641099999999994	7.69701	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	132812925	132813025	10437041	0	-	0.36	(0.32,0.36]	chrX	1034989	547	INTRON	INTRON	HS6ST2	ENSG00000171004.19	ENST00000370833.7:ENST00000370836.6:ENST00000640529.2:ENST00000406696.5:ENST00000521489.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	6.93075	7.054589999999999	7.17843	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	186787584	186787611	2129334	0	+	0.222222	[0,0.32]	chr3	209437	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000497177.1:ENST00000494445.1:ENST00000461021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	121	2	6.52188	7.05401	7.58614	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	73542352	73542451	6645443	0	-	0.363636	(0.36,0.392]	chr11	609053	735	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	6.85517	7.05345	7.25173	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	3512881	3512981	5538128	0	-	0.31	[0,0.32]	chr9	498851	222	INTRON	INTRON	RFX3	ENSG00000080298.16	ENST00000617270.5:ENST00000382004.7:ENST00000449190.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	6.75615	7.051715	7.34728	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	103620880	103620979	6245029	0	-	0.454545	(0.424,0.459]	chr10	559165	32	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000420222.2:ENST00000691105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	141	2	6.64413	7.04171	7.43929	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	12701436	12701536	6325170	0	+	0.4	(0.392,0.424]	chr11	567852	255	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	6.47152	7.0380400000000005	7.60456	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	47096824	47096924	9970255	0	+	0.37	(0.36,0.392]	chr22	992252	593	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	6.6868	7.02443	7.36206	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	180259022	180259122	368779	0	+	0.67	(0.629,1]	chr1	39964	102	INTRON	INTRON	LHX4	ENSG00000121454.6	ENST00000263726.4:ENST00000561113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	6.85128	7.0238	7.19632	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	202954040	202954140	839644	0	-	0.4	(0.392,0.424]	chr1	93161	4	SS5_PROX	SS5_PROX:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	6.54795	7.01996	7.49197	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	16701554	16701654	6071095	0	-	0.35	(0.32,0.36]	chr10	544274	60	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	6.85341	7.0159199999999995	7.17843	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	18249450	18249550	4016417	0	-	0.31	[0,0.32]	chr6	363495	4	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	6.75062	7.01313	7.27564	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	139857469	139857569	10455535	0	-	0.53	(0.526,0.57]	chrX	1035914	253	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	6.49997	7.00954	7.51911	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	128640849	128640947	2431007	0	-	0.346939	(0.32,0.36]	chr3	233012	24	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000479113.1:ENST00000476931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	6.77168	7.0083850000000005	7.24509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	183473220	183473310	375178	0	+	0.544444	(0.526,0.57]	chr1	40727	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	185	2	6.45692	6.99986	7.5428	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	54861510	54861610	628204	0	-	0.57	(0.526,0.57]	chr1	69967	51	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	6.75788	6.994615	7.23135	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	2437684	2437784	4285749	0	+	0.49	(0.459,0.49]	chr7	388551	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000313156.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	6.8526	6.99444	7.13628	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	62556692	62556789	6931619	0	+	0.360825	(0.36,0.392]	chr12	634472	1	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	112	2	6.45428	6.989789999999999	7.5253	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	31140895	31140995	8694986	0	+	0.36	(0.32,0.36]	chr17	823261	120	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000489712.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	6.59287	6.98135	7.36983	1.01197e-12	1e-12	1.74544e-10	1.72912e-10
chr17	43295052	43295152	8938412	0	-	0.48	(0.459,0.49]	chr17	859071	649	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4	202	2	6.82297	6.979545	7.13612	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	28908062	28908161	971761	0	+	0.363636	(0.36,0.392]	chr2	106194	11	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	6.52106	6.978515	7.43597	2.09599e-12	1e-12	3.49782e-10	1.72912e-10
chr12	79672401	79672501	7217763	0	-	0.41	(0.392,0.424]	chr12	665706	36	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1:ENST00000547571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	158	2	6.23745	6.978	7.71855	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	4678363	4678461	8310245	0	+	0.540816	(0.526,0.57]	chr16	774116	4	INTRON	INTRON	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5:ENST00000590790.5:ENST00000591673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	302	2	5.97615	6.971755	7.96736	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	128023209	128023308	3586281	0	-	0.313131	[0,0.32]	chr5	325643	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000606855.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	6.23247	6.968170000000001	7.70387	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	18255530	18255630	4016478	0	-	0.35	(0.32,0.36]	chr6	363501	4	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	6.59844	6.96114	7.32384	2.46503e-12	1e-12	4.05946e-10	1.73382e-10
chrX	24189055	24189154	10104779	0	+	0.565657	(0.526,0.57]	chrX	1007471	89	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	6.87152	6.95824	7.04496	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	61069829	61069928	8763946	0	+	0.434343	(0.424,0.459]	chr17	834155	286	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000592827.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	134	2	6.88349	6.9573599999999995	7.03123	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	66398537	66398637	8779871	0	+	0.45	(0.424,0.459]	chr17	835622	586	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	6.85619	6.9559999999999995	7.05581	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	122792377	122792476	3300212	0	+	0.464646	(0.459,0.49]	chr5	303088	163	INTRON	INTRON	SNX2	ENSG00000205302.7	ENST00000512394.5:ENST00000379516.7:ENST00000505934.5:ENST00000505854.5:ENST00000514949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	6.89307	6.953915	7.01476	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	43770183	43770210	3784593	0	+	0.592593	(0.57,0.629]	chr6	347115	1	EXON_MRNA	EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5	protein_coding	retained_intron	protein_coding	retained_intron	0	68	2	6.87336	6.9500150000000005	7.02667	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	23087893	23087992	7777473	0	-	0.393939	(0.392,0.424]	chr14	716037	57	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	6.74537	6.946635000000001	7.1479	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	62898660	62898760	1050530	0	+	0.41	(0.392,0.424]	chr2	111869	170	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	6.20174	6.94538	7.68902	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	137996503	137996603	3612936	0	-	0.35	(0.32,0.36]	chr5	327878	78	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	6.85341	6.94425	7.03509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	5675172	5675272	5327499	0	+	0.46	(0.459,0.49]	chr9	476821	181	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	6.73339	6.934835	7.13628	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	47674061	47674137	8734570	0	+	0.355263	(0.32,0.36]	chr17	830125	1	INTRON	INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	6.19049	6.93425	7.67801	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	133660344	133660443	2439303	0	-	0.383838	(0.36,0.392]	chr3	234232	8	INTRON	INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	6.85878	6.93235	7.00592	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	15807832	15807932	10087670	0	+	0.5	(0.49,0.526]	chrX	1006308	2	SS3_PROX	SS3_PROX:INTRON	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	6.81751	6.92832	7.03913	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	28247471	28247571	6857241	0	+	0.27	[0,0.32]	chr12	626376	209	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	6.22164	6.925565	7.62949	8.84932e-10	1e-12	1.05098e-7	1.72912e-10
chr3	57817113	57817213	1896301	0	+	0.42	(0.392,0.424]	chr3	192872	589	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	6.58649	6.924545	7.2626	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	131491779	131491879	2437015	0	-	0.42	(0.392,0.424]	chr3	233782	13	INTRON	INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5:ENST00000512877.1:ENST00000506946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	6.58649	6.924545	7.2626	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	139284407	139284506	3333045	0	+	0.424242	(0.392,0.424]	chr5	305984	18	EXON_LNCRNA	EXON_LNCRNA	SNHG4	ENSG00000281398.4	ENST00000505522.6	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	6.54795	6.92421	7.30047	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	36116187	36116287	9639427	0	+	0.49	(0.459,0.49]	chr20	951871	20	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	6.09889	6.923159999999999	7.74743	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	20647892	20647992	3726923	0	+	0.49	(0.459,0.49]	chr6	338599	884	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	6.39121	6.921805	7.4524	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	98934008	98934108	3262620	0	+	0.39	(0.36,0.392]	chr5	300671	31	INTRON	INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	6.69978	6.921094999999999	7.14241	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	175082662	175082761	1622469	0	-	0.373737	(0.36,0.392]	chr2	167567	15	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	6.11568	6.91982	7.72396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	33819033	33819133	5368914	0	+	0.29	[0,0.32]	chr9	479420	7	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	6.91431	6.91945	6.92459	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	10115682	10115781	6560652	0	-	0.30303	[0,0.32]	chr11	596538	712	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	6.1542	6.917035	7.67987	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	70270277	70270377	4413426	0	+	0.38	(0.36,0.392]	chr7	397006	756	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643587.1:ENST00000659051.1:ENST00000643060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	6.6868	6.909525	7.13225	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24762442	24762542	10106642	0	+	0.39	(0.36,0.392]	chrX	1007701	131	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	6.36345	6.90927	7.45509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	69165040	69165140	8419696	0	+	0.59	(0.57,0.629]	chr16	788755	3	SS3_PROX	SS3_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	6.87336	6.9079049999999995	6.94245	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	11287457	11287555	1764571	0	+	0.561224	(0.526,0.57]	chr3	181473	47	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000451513.5:ENST00000451830.5:ENST00000460444.5:ENST00000470474.1:ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000444619.5:ENST00000418682.5:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000419112.5:ENST00000469654.2:ENST00000423116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	137	2	6.8151	6.904375	6.99365	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	184868160	184868260	822261	0	-	0.34	(0.32,0.36]	chr1	91264	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4:ENST00000461167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	6.77168	6.903385	7.03509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	18255430	18255530	4016477	0	-	0.36	(0.32,0.36]	chr6	363501	3	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	214	2	6.22416	6.900865	7.57757	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	72092039	72092139	6636942	0	-	0.45	(0.424,0.459]	chr11	608189	52	INTRON	INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5	protein_coding	protein_coding	protein_coding	protein_coding	4	149	2	6.22452	6.898664999999999	7.57281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	69721929	69722029	4407931	0	+	0.41	(0.392,0.424]	chr7	396954	583	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	6.58649	6.89644	7.20639	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	66398637	66398737	8779872	0	+	0.45	(0.424,0.459]	chr17	835622	587	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	6.31816	6.89593	7.4737	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	46971189	46971288	1020351	0	+	0.383838	(0.36,0.392]	chr2	109923	123	INTRON	INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	6.78147	6.893694999999999	7.00592	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	96263801	96263901	4780486	0	-	0.4	(0.392,0.424]	chr7	428127	285	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	6.69872	6.89283	7.08694	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	27623066	27623166	6854604	0	+	0.39	(0.36,0.392]	chr12	626082	232	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5:ENST00000535575.1:ENST00000542187.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	38	2	6.69978	6.887779999999999	7.07578	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	39055219	39055319	3448211	0	-	0.41	(0.392,0.424]	chr5	317414	337	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	6.8187	6.887705	6.95671	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	6624571	6624669	3415725	0	-	0.438776	(0.424,0.459]	chr5	314492	9	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5:ENST00000505264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	6.87221	6.883039999999999	6.89387	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	4677497	4677595	1752980	0	+	0.520408	(0.49,0.526]	chr3	179558	3	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	167	2	6.53582	6.8813200000000005	7.22682	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	149535204	149535303	3636457	0	-	0.414141	(0.392,0.424]	chr5	330396	33	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	6.73625	6.877454999999999	7.01866	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	49406072	49406172	6903326	0	+	0.47	(0.459,0.49]	chr12	629136	2	SS3_PROX	SS3_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	120	2	6.84614	6.877395	6.90865	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	41978411	41978509	8930595	0	-	0.510204	(0.49,0.526]	chr17	857553	7	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000587727.6:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	550	2	6.80529	6.875895	6.9465	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	4823523	4823622	1754501	0	+	0.313131	[0,0.32]	chr3	179787	49	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1:ENST00000648212.1:ENST00000648016.1:ENST00000648390.1:ENST00000649144.1:ENST00000649694.1:ENST00000467545.6:ENST00000650139.1:ENST00000649767.1:ENST00000650074.1:ENST00000463980.6:ENST00000493491.6:ENST00000648208.1:ENST00000649314.1:ENST00000650552.1:ENST00000648770.1:ENST00000647997.1:ENST00000649430.1:ENST00000478515.2:ENST00000649139.1:ENST00000647685.1:ENST00000649908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	5.91209	6.8666599999999995	7.82123	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	195128690	195128790	2523882	0	-	0.45	(0.424,0.459]	chr3	241746	66	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	100	2	6.82593	6.86378	6.90163	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	133090892	133090992	3319390	0	+	0.32	[0,0.32]	chr5	304564	3	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	5.65048	6.859315	8.06815	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	11838313	11838413	8510465	0	-	0.5	(0.49,0.526]	chr16	798630	2	SS3_PROX	SS3_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	6.76551	6.85459	6.94367	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	30754294	30754394	8691751	0	+	0.51	(0.49,0.526]	chr17	822890	106	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	56	2	6.76551	6.85459	6.94367	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	46658662	46658732	3789903	0	+	0.371429	(0.36,0.392]	chr6	347699	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SLC25A27	ENSG00000153291.16	ENST00000411689.6:ENST00000371347.10:ENST00000603486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	6.01323	6.853025000000001	7.69282	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	72459663	72459762	10370823	0	-	0.484848	(0.459,0.49]	chrX	1029655	24	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	114	2	5.56985	6.850975	8.1321	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	41035289	41035387	579345	0	-	0.428571	(0.424,0.459]	chr1	65740	8	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000472037.5:ENST00000695336.1:ENST00000456518.3:ENST00000460215.5:ENST00000498793.5:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	6.03073	6.84803	7.66533	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	3791017	3791117	6542097	0	-	0.51	(0.49,0.526]	chr11	594484	85	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	6.65554	6.847335	7.03913	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	42812966	42813047	8935659	0	-	0.444444	(0.424,0.459]	chr17	858605	1	SS3_PROX	SS3_PROX:INTRON	BECN1	ENSG00000126581.13	ENST00000590099.6:ENST00000617806.4:ENST00000361523.8:ENST00000590764.1:ENST00000438274.7:ENST00000588276.5:ENST00000543382.6:ENST00000589663.5:ENST00000587880.1:ENST00000586589.5:ENST00000586754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	6.67242	6.8454049999999995	7.01839	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	26976956	26977055	7127329	0	-	0.363636	(0.36,0.392]	chr12	654467	2	INTRON	INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000545344.5:ENST00000545303.5:ENST00000537406.1:ENST00000535260.5:ENST00000543882.5:ENST00000541081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	6.6868	6.8443950000000005	7.00199	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	228404732	228404830	878181	0	-	0.418367	(0.392,0.424]	chr1	97739	27	UTR5	UTR5:EXON_MRNA:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	6.54795	6.84301	7.13807	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	138516200	138516300	1155891	0	+	0.43	(0.424,0.459]	chr2	123495	137	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000430968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	5.93376	6.8423300000000005	7.7509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	43058670	43058756	8145801	0	-	0.313953	[0,0.32]	chr15	754498	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR1	ENSG00000159459.12	ENST00000290650.9:ENST00000546274.6:ENST00000569971.5:ENST00000563239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	6.40833	6.841985	7.27564	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	79017506	79017606	2352651	0	-	0.43	(0.424,0.459]	chr3	227145	782	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	6.44045	6.83982	7.23919	1.52944e-12	1e-12	2.57541e-10	1.72912e-10
chr7	1097943	1098042	4604904	0	-	0.444444	(0.424,0.459]	chr7	414625	428	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	6.08257	6.837135	7.5917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	80003223	80003322	3230614	0	+	0.333333	(0.32,0.36]	chr5	298396	44	INTRON	INTRON	THBS4	ENSG00000113296.14	ENST00000513310.5:ENST00000510218.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	35	2	6.4944	6.836415	7.17843	6.14897e-12	1e-12	9.707400000000001e-10	1.72912e-10
chr7	123700440	123700540	4837887	0	-	0.52	(0.49,0.526]	chr7	433218	33	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	6.81751	6.829475	6.84144	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	14596273	14596372	6062159	0	-	0.444444	(0.424,0.459]	chr10	543703	241	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000442012.5:ENST00000471815.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	6.34617	6.81783	7.28949	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	29555370	29555464	10010037	0	-	0.468085	(0.459,0.49]	chr22	997024	7	UTR3	UTR3:EXON_MRNA	NIPSNAP1	ENSG00000184117.12	ENST00000216121.12	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	6.79423	6.81666	6.83909	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	40056283	40056383	9946430	0	+	0.38	(0.36,0.392]	chr22	989390	103	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	6.69978	6.816145	6.93251	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	188296240	188296340	2132427	0	+	0.36	(0.32,0.36]	chr3	209616	557	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	6.36632	6.81582	7.26532	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	16392683	16392783	9788823	0	+	0.45	(0.424,0.459]	chr21	970624	6	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	6.67242	6.814945	6.95747	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	37231746	37231844	3442894	0	-	0.214286	[0,0.32]	chr5	316737	3	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000425232.7:ENST00000676290.1:ENST00000675547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	6.34555	6.814555	7.28356	1.33932e-10	1e-12	1.78706e-8	1.72912e-10
chr1	25243827	25243924	547434	0	-	0.298969	[0,0.32]	chr1	60606	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000569495.5:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000475766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	6.27375	6.810515	7.34728	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	24663624	24663724	76912	0	+	0.39	(0.36,0.392]	chr1	7893	4	SS5_PROX	SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000461768.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	6.55149	6.810040000000001	7.06859	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149647983	149648082	2470836	0	-	0.444444	(0.424,0.459]	chr3	236997	719	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	6.68428	6.80869	6.9331	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	72092139	72092239	6636943	0	-	0.46	(0.459,0.49]	chr11	608189	53	INTRON	INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	5.95655	6.806635	7.65672	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	47545812	47545912	6605035	0	-	0.5	(0.49,0.526]	chr11	601350	212	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	161	2	6.1501	6.80186	7.45362	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	29426982	29427082	8687198	0	+	0.36	(0.32,0.36]	chr17	822297	356	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	6.4944	6.80147	7.10854	6.14897e-12	1e-12	9.707400000000001e-10	1.72912e-10
chr5	59279816	59279916	3475042	0	-	0.35	(0.32,0.36]	chr5	319239	38	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	312	2	6.7307	6.80084	6.87098	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	28560831	28560931	5824733	0	+	0.47	(0.459,0.49]	chr10	523623	224	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	6.10443	6.798005	7.49158	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	120408833	120408932	2403051	0	-	0.393939	(0.392,0.424]	chr3	230241	35	INTRON	INTRON	FSTL1	ENSG00000163430.12	ENST00000295633.8:ENST00000424703.6:ENST00000468098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	6.62774	6.79139	6.95504	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	9374415	9374515	1756626	0	+	0.43	(0.424,0.459]	chr3	180037	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000441127.5:ENST00000416603.1:ENST00000461636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	143	2	6.70401	6.789135	6.87426	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	907503	907603	8833085	0	-	0.49	(0.459,0.49]	chr17	842936	4	SS5_PROX	SS5_PROX:INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000577098.5:ENST00000571338.1:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	6.78301	6.78862	6.79423	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	41978509	41978607	8930596	0	-	0.5	(0.49,0.526]	chr17	857553	8	INTRON	INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000587727.6:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	196	2	6.78396	6.787075	6.79019	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	28908161	28908259	971762	0	+	0.428571	(0.424,0.459]	chr2	106194	12	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	6.74214	6.7847349999999995	6.82733	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	240487159	240487259	1734717	0	-	0.35	(0.32,0.36]	chr2	178219	45	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000407275.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	6.38871	6.783569999999999	7.17843	3.86634e-11	1e-12	5.49052e-9	1.72912e-10
chr3	131496678	131496778	2437064	0	-	0.33	(0.32,0.36]	chr3	233782	62	INTRON	INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5:ENST00000512877.1:ENST00000506946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	6.61877	6.779475	6.94018	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	27431046	27431146	6584098	0	-	0.37	(0.36,0.392]	chr11	598932	178	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	6.75382	6.77606	6.7983	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	140256039	140256139	3622084	0	-	0.45	(0.424,0.459]	chr5	328838	96	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	6.55792	6.77472	6.99152	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	79302049	79302147	3228329	0	+	0.377551	(0.36,0.392]	chr5	298180	8	INTRON	INTRON	JMY	ENSG00000152409.9	ENST00000396137.5:ENST00000412001.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	6.68017	6.769475	6.85878	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	12171116	12171216	8323271	0	+	0.52	(0.49,0.526]	chr16	775379	355	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	6.40673	6.767695	7.12866	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	32592780	32592879	3142415	0	+	0.424242	(0.392,0.424]	chr5	290113	7	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	333	2	6.15159	6.76734	7.38309	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	90931716	90931815	684979	0	-	0.353535	(0.32,0.36]	chr1	74528	132	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000479798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	6.4944	6.764745	7.03509	6.14897e-12	1e-12	9.707400000000001e-10	1.72912e-10
chr7	7187006	7187106	4303395	0	+	0.44	(0.424,0.459]	chr7	390130	38	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	6.27402	6.7633399999999995	7.25266	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	107304244	107304344	4805770	0	-	0.36	(0.32,0.36]	chr7	431528	55	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	6.31006	6.757194999999999	7.20433	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	181008631	181008730	1227045	0	+	0.50505	(0.49,0.526]	chr2	128500	187	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	6.54884	6.755975	6.96311	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	59325121	59325221	8195296	0	-	0.54	(0.526,0.57]	chr15	759880	523	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	6.65118	6.755615000000001	6.86005	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	7576751	7576810	8641366	0	+	0.525424	(0.49,0.526]	chr17	817101	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A1	ENSG00000161960.16	ENST00000293831.13:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	252	2	6.30225	6.755185	7.20812	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	38523782	38523881	9649200	0	+	0.454545	(0.424,0.459]	chr20	952870	17	INTRON	INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2:ENST00000461423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	5.80941	6.755095	7.70078	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	108768370	108768470	250062	0	+	0.37	(0.36,0.392]	chr1	25318	79	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000486601.5:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	6.19731	6.75263	7.30795	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819493	91819593	5658282	0	-	0.45	(0.424,0.459]	chr9	506482	433	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	134	2	6.26337	6.751025	7.23868	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	42295358	42295457	4975788	0	+	0.525253	(0.49,0.526]	chr8	446304	14	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	6.73142	6.7484649999999995	6.76551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	33920035	33920135	8122114	0	-	0.42	(0.392,0.424]	chr15	751353	344	INTRON	INTRON	AVEN	ENSG00000169857.9	ENST00000675287.1:ENST00000306730.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	6.47592	6.74729	7.01866	3.31901e-12	1e-12	5.37234e-10	1.73382e-10
chr8	140194216	140194316	5293056	0	-	0.59	(0.57,0.629]	chr8	472690	1122	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	6.7075	6.74573	6.78396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	231096772	231096872	1331637	0	+	0.51	(0.49,0.526]	chr2	137750	92	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1:ENST00000488354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	6.40673	6.74566	7.08459	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	35353643	35353743	3764503	0	+	0.5	(0.49,0.526]	chr6	344034	61	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	3	152	2	6.31695	6.745075	7.1732	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	37290090	37290189	1828566	0	+	0.252525	[0,0.32]	chr3	185086	4	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	6.56541	6.73986	6.91431	2.98916e-12	1e-12	4.91016e-10	1.72912e-10
chr11	6523247	6523346	6307878	0	+	0.434343	(0.424,0.459]	chr11	565868	25	INTRON	INTRON	DNHD1	ENSG00000179532.13	ENST00000254579.11	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	6.60706	6.739635	6.87221	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	33507984	33508084	9627822	0	+	0.45	(0.424,0.459]	chr20	950386	173	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	6.60706	6.739635	6.87221	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	207148881	207148981	1678444	0	-	0.48	(0.459,0.49]	chr2	172628	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KLF7	ENSG00000118263.15	ENST00000309446.11:ENST00000421199.5:ENST00000423015.5:ENST00000458272.1:ENST00000426163.5:ENST00000457962.5:ENST00000451244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	6.46435	6.739554999999999	7.01476	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	114502965	114503065	6259018	0	-	0.37	(0.36,0.392]	chr10	560387	107	INTRON	INTRON	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7:ENST00000369253.6:ENST00000369256.6:ENST00000649363.1:ENST00000651092.1:ENST00000651023.1:ENST00000428430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	6.69978	6.73661	6.77344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	87305100	87305200	6194129	0	-	0.38	(0.36,0.392]	chr10	554181	122	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000420424.1:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	6.61318	6.7341750000000005	6.85517	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	49273701	49273800	7973082	0	+	0.373737	(0.36,0.392]	chr15	737558	340	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000327171.7:ENST00000396509.6:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5:ENST00000561014.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	6.6868	6.734135	6.78147	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	93385162	93385262	6987506	0	+	0.36	(0.32,0.36]	chr12	638157	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	5.96836	6.7265	7.48464	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	41661123	41661222	7952163	0	+	0.474747	(0.459,0.49]	chr15	734962	2	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.13:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	6.66988	6.726445	6.78301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	49657736	49657836	7817503	0	-	0.34	(0.32,0.36]	chr14	719594	15	INTRON	INTRON	POLE2	ENSG00000100479.13	ENST00000216367.10:ENST00000539565.6:ENST00000556584.5:ENST00000554396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	6.59844	6.725925	6.85341	2.46503e-12	1e-12	4.05946e-10	1.73382e-10
chr13	49765070	49765170	7525821	0	-	0.32	[0,0.32]	chr13	692284	177	INTRON	INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	5.72139	6.724965	7.72854	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	17923922	17924021	2848570	0	-	0.484848	(0.459,0.49]	chr4	269613	142	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	6.22567	6.724405	7.22314	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	183766547	183766646	2121622	0	+	0.383838	(0.36,0.392]	chr3	207958	39	INTRON	INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	6.30768	6.719965	7.13225	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	80626816	80626915	3522923	0	-	0.343434	(0.32,0.36]	chr5	321943	7	UTR3	UTR3:EXON_MRNA	DHFR	ENSG00000228716.7	ENST00000439211.7	protein_coding	protein_coding	protein_coding	protein_coding	7	153	2	6.23065	6.718035	7.20542	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	48654357	48654440	7157831	0	-	0.46988	(0.459,0.49]	chr12	657585	2	SS3_PROX	SS3_PROX:INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549463.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	168	2	6.67281	6.716255	6.7597	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	98736788	98736888	1932470	0	+	0.38	(0.36,0.392]	chr3	195148	28	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	6.49615	6.714155	6.93216	6.03728e-12	1e-12	9.57482e-10	1.73382e-10
chr15	25056828	25056914	7927810	0	+	0.406977	(0.392,0.424]	chr15	731671	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656959.1:ENST00000655965.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000657798.1:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1	lncRNA	lncRNA	lncRNA	lncRNA	4	88	2	5.50857	6.712375	7.91618	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46137129	46137229	8948773	0	-	0.43	(0.424,0.459]	chr17	860850	159	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	134	2	5.79709	6.711774999999999	7.62646	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	10778685	10778784	3706794	0	+	0.424242	(0.392,0.424]	chr6	337301	81	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	54	2	6.06532	6.70805	7.35078	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	23767223	23767323	1394322	0	-	0.42	(0.392,0.424]	chr2	144489	12	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	6.66604	6.69969	6.73334	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	107956206	107956306	4155201	0	-	0.41	(0.392,0.424]	chr6	378389	1	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1:ENST00000460009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	6.30959	6.698265	7.08694	3.72697e-11	1e-12	5.32557e-9	1.72912e-10
chr1	121218509	121218609	280243	0	+	0.32	[0,0.32]	chr1	28914	306	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	6.56541	6.6965	6.82759	2.98916e-12	1e-12	4.91016e-10	1.72912e-10
chr3	119879687	119879780	2400423	0	-	0.376344	(0.36,0.392]	chr3	230026	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000678013.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678181.1:ENST00000678561.1:ENST00000676887.1:ENST00000676948.1:ENST00000677046.1:ENST00000678787.1:ENST00000679066.1:ENST00000679188.1:ENST00000678377.1:ENST00000677995.1:ENST00000677069.1:ENST00000677483.1:ENST00000678509.1:ENST00000677648.1:ENST00000678210.1:ENST00000677788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	6.61318	6.69331	6.77344	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	2498916	2499015	10253641	0	-	0.343434	(0.32,0.36]	chrX	1021564	78	INTRON	INTRON	DHRSX:ZBED1	ENSG00000169084.15:ENSG00000214717.12	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7:ENST00000381222.8:ENST00000381223.9:ENST00000652001.1:ENST00000381218.8:ENST00000461691.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	6.06011	6.691974999999999	7.32384	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	28241562	28241662	6357203	0	+	0.36	(0.32,0.36]	chr11	569663	300	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	6.68504	6.69101	6.69698	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	72780428	72780528	8431637	0	+	0.33	(0.32,0.36]	chr16	790235	329	INTRON	INTRON	ENSG00000259768	ENSG00000259768.7	ENST00000668995.1:ENST00000689200.1:ENST00000687589.1:ENST00000692742.1:ENST00000692937.1:ENST00000653037.1:ENST00000686426.1:ENST00000563328.4	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	6.68504	6.69101	6.69698	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	49942593	49942688	9670288	0	+	0.494737	(0.49,0.526]	chr20	955755	5	INTRON	INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	6.12201	6.68836	7.25471	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28653725	28653825	10007842	0	-	0.39	(0.36,0.392]	chr22	996548	235	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000468807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	6.52106	6.688115	6.85517	2.09599e-12	1e-12	3.49782e-10	1.72912e-10
chr3	125363612	125363712	2419296	0	-	0.41	(0.392,0.424]	chr3	231886	59	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	6.17562	6.68494	7.19426	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	28368712	28368812	6858471	0	+	0.41	(0.392,0.424]	chr12	626438	58	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	6.12153	6.684934999999999	7.24834	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	181254719	181254819	3409444	0	+	0.41	(0.392,0.424]	chr5	313419	64	INTRON	INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	5.74469	6.68263	7.62057	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	188176929	188177029	2131228	0	+	0.43	(0.424,0.459]	chr3	209595	223	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	6.60706	6.6746	6.74214	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	66079019	66079117	3197068	0	+	0.387755	(0.36,0.392]	chr5	294876	6	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	6.4102	6.67118	6.93216	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	95792134	95792233	6471919	0	+	0.343434	(0.32,0.36]	chr11	584911	10	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	6.50396	6.668760000000001	6.83356	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	35693248	35693342	9735713	0	-	0.446809	(0.424,0.459]	chr20	964106	5	INTRON	INTRON	NFS1	ENSG00000244005.13	ENST00000374092.9:ENST00000374085.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5:ENST00000413203.5:ENST00000456462.5:ENST00000419569.5:ENST00000421540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	6.08257	6.667615	7.25266	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	30969718	30969818	9929455	0	+	0.6	(0.57,0.629]	chr22	986218	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	5.73698	6.66559	7.5942	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	17416717	17416817	10091471	0	+	0.4	(0.392,0.424]	chrX	1006577	400	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	6.29738	6.66438	7.03138	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	138535799	138535897	2450166	0	-	0.418367	(0.392,0.424]	chr3	235172	29	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	485	2	6.53845	6.66411	6.78977	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	160226655	160226754	785650	0	-	0.363636	(0.36,0.392]	chr1	87730	6	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	6.31702	6.66147	7.00592	7.38095e-11	1e-12	1.00784e-8	1.72912e-10
chr22	28593355	28593455	10007237	0	-	0.38	(0.36,0.392]	chr22	996542	1504	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	6.39047	6.661315	6.93216	3.80762e-11	1e-12	5.38572e-9	1.73382e-10
chr18	21108820	21108920	9187676	0	-	0.36	(0.32,0.36]	chr18	885462	379	INTRON	INTRON	ROCK1	ENSG00000067900.8	ENST00000399799.3:ENST00000635540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	6.01217	6.66049	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	116866131	116866231	5255898	0	-	0.33	(0.32,0.36]	chr8	469673	30	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1:ENST00000519469.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	6.01122	6.660015	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	140695305	140695405	5297325	0	-	0.45	(0.424,0.459]	chr8	472988	78	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000521985.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	128	2	5.89887	6.659445	7.42002	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	62340586	62340684	9776706	0	-	0.489796	(0.459,0.49]	chr20	969302	16	INTRON	INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	6.53379	6.6584	6.78301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	19967258	19967357	7328307	0	+	0.393939	(0.392,0.424]	chr13	677545	16	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	6.12153	6.657895	7.19426	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	34087490	34087589	9808136	0	+	0.383838	(0.36,0.392]	chr21	972067	134	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	6.1719	6.6571549999999995	7.14241	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46137229	46137329	8948774	0	-	0.3	[0,0.32]	chr17	860850	160	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	6.16875	6.65702	7.14529	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	91232332	91232431	5933095	0	+	0.30303	[0,0.32]	chr10	532049	45	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	6.63676	6.650345	6.66393	1.39611e-12	1e-12	2.35903e-10	1.73382e-10
chr13	96504424	96504524	7418632	0	+	0.45	(0.424,0.459]	chr13	683824	4125	INTRON	INTRON	HS6ST3	ENSG00000185352.9	ENST00000376705.4	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	5.82357	6.649175	7.47478	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	43892853	43892949	9507215	0	-	0.375	(0.36,0.392]	chr19	937426	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF404:ENSG00000267058	ENSG00000176222.9:ENSG00000267058.1	ENST00000588094.1:ENST00000587128.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	0	32	2	6.59462	6.6472	6.69978	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	111663300	111663400	6492476	0	+	0.4	(0.392,0.424]	chr11	586972	425	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	6.20407	6.645505	7.08694	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr9	20659724	20659824	5359361	0	+	0.41	(0.392,0.424]	chr9	478343	5	INTRON	INTRON	FOCAD	ENSG00000188352.13	ENST00000380249.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	5.86962	6.644395	7.41917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	34235137	34235236	5370500	0	+	0.191919	[0,0.32]	chr9	479465	4	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	6.45967	6.64363	6.82759	2.0258e-11	1e-12	2.97161e-9	1.72912e-10
chr6	45351820	45351920	4074733	0	-	0.47	(0.459,0.49]	chr6	371463	285	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	6.38352	6.638294999999999	6.89307	1.10534e-12	1e-12	1.89699e-10	1.73382e-10
chr1	205730320	205730419	846136	0	-	0.393939	(0.392,0.424]	chr1	94185	3	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	5.66597	6.635265	7.60456	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	6624473	6624571	3415724	0	-	0.5	(0.49,0.526]	chr5	314492	8	INTRON	INTRON	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000506139.5:ENST00000505264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	6.53649	6.633955	6.73142	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	26844175	26844275	6085880	0	-	0.4	(0.392,0.424]	chr10	545487	40	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	6.37754	6.6330100000000005	6.88848	1.91154e-11	1e-12	2.81903e-9	1.73382e-10
chr1	51751441	51751535	144477	0	+	0.340426	(0.32,0.36]	chr1	17657	9	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000524620.1:ENST00000528603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	6.49267	6.632175	6.77168	1.53492e-11	1e-12	2.28984e-9	1.73382e-10
chr8	53980668	53980768	5170480	0	-	0.45	(0.424,0.459]	chr8	463579	11	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	6.62973	6.631985	6.63424	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	19833225	19833325	10290923	0	-	0.57	(0.526,0.57]	chrX	1023468	336	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	5.59015	6.62964	7.66913	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	100135752	100135852	5450384	0	+	0.37	(0.36,0.392]	chr9	486785	34	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	5.94749	6.62772	7.30795	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	4678461	4678558	8310246	0	+	0.494845	(0.49,0.526]	chr16	774116	5	INTRON	INTRON	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5:ENST00000590790.5:ENST00000591673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	163	2	6.13274	6.625719999999999	7.1187	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	109676052	109676151	2709697	0	+	0.434343	(0.424,0.459]	chr4	257834	113	INTRON	INTRON	MCUB	ENSG00000005059.16	ENST00000472310.5:ENST00000394650.7:ENST00000452915.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	6.35402	6.623945	6.89387	6.61571e-12	1e-12	1.03402e-9	1.72912e-10
chrX	119434652	119434752	10212100	0	+	0.59	(0.57,0.629]	chrX	1017169	79	INTRON	INTRON	SLC25A43	ENSG00000077713.19	ENST00000217909.8:ENST00000488158.5:ENST00000493093.5:ENST00000484058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	5.70798	6.6229499999999994	7.53792	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	68108535	68108635	7671508	0	+	0.41	(0.392,0.424]	chr14	705768	385	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	118	2	6.43626	6.622495	6.80873	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	84333332	84333432	6685904	0	-	0.41	(0.392,0.424]	chr11	611968	161	INTRON	INTRON	DLG2	ENSG00000150672.18	ENST00000398309.6:ENST00000376104.7:ENST00000650630.1:ENST00000648622.1:ENST00000524982.5:ENST00000532653.5:ENST00000529111.5:ENST00000527466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	6.56802	6.618065	6.66811	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	63694964	63695064	3803193	0	+	0.34	(0.32,0.36]	chr6	348837	2	SS5_PROX	SS5_PROX:INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	5.86583	6.61783	7.36983	6.04906e-8	1e-12	5.40424e-6	1.72912e-10
chr15	72541620	72541720	8035181	0	+	0.32	[0,0.32]	chr15	742156	231	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	6.23247	6.61722	7.00197	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	155087567	155087666	10245583	0	+	0.444444	(0.424,0.459]	chrX	1021075	85	INTRON	INTRON	BRCC3	ENSG00000185515.16	ENST00000340647.8:ENST00000369459.6:ENST00000369462.5:ENST00000330045.12:ENST00000411985.5:ENST00000453705.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	204	2	5.91342	6.61442	7.31542	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	246182345	246182445	915278	0	-	0.44	(0.424,0.459]	chr1	100951	861	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	82	2	5.30832	6.6142	7.92008	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	31494112	31494212	7135440	0	-	0.37	(0.36,0.392]	chr12	655371	135	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000546299.1:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	5.57843	6.6142	7.64997	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	6577088	6577186	7077160	0	-	0.55102	(0.526,0.57]	chr12	649889	35	INTRON	INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000643367.1:ENST00000646609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	112	2	6.47262	6.612155	6.75169	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	9565230	9565328	9179203	0	-	0.428571	(0.424,0.459]	chr18	884503	13	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	6.03613	6.611605	7.18708	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	39065344	39065443	1424063	0	-	0.383838	(0.36,0.392]	chr2	148239	62	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	6.15258	6.610585	7.06859	1.50388e-9	1e-12	1.73555e-7	1.73382e-10
chr1	103563861	103563959	248561	0	+	0.316327	[0,0.32]	chr1	25117	14	INTRON	INTRON	AMY2B	ENSG00000240038.7	ENST00000477657.5:ENST00000361355.8:ENST00000435302.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	6.29351	6.60905	6.92459	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	29538877	29538976	8688338	0	+	0.252525	[0,0.32]	chr17	822405	42	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	5.63471	6.606005	7.5773	1.00198e-12	1e-12	1.73624e-10	1.72912e-10
chr5	59244783	59244882	3474690	0	-	0.30303	[0,0.32]	chr5	319234	281	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	6.45967	6.5975	6.73533	2.0258e-11	1e-12	2.97161e-9	1.72912e-10
chrX	46861099	46861198	10121121	0	+	0.343434	(0.32,0.36]	chrX	1009046	6	INTRON	INTRON	RP2	ENSG00000102218.6	ENST00000218340.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	6.4944	6.595689999999999	6.69698	6.14897e-12	1e-12	9.707400000000001e-10	1.72912e-10
chr17	31097168	31097268	8694548	0	+	0.59	(0.57,0.629]	chr17	823257	14	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	6.58659	6.59412	6.60165	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	139063790	139063888	4866431	0	-	0.336735	(0.32,0.36]	chr7	435537	23	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	6.07586	6.5922	7.10854	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	44749173	44749273	1011231	0	+	0.43	(0.424,0.459]	chr2	109458	51	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000613618.1	protein_coding	protein_coding	protein_coding	protein_coding	7	163	2	5.94374	6.59121	7.23868	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	36317993	36318092	7487425	0	-	0.525253	(0.49,0.526]	chr13	689442	32	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000475603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	6.26276	6.589475	6.91619	6.58018e-12	1e-12	1.03239e-9	1.73382e-10
chr10	101969118	101969218	6239849	0	-	0.36	(0.32,0.36]	chr10	558414	110	INTRON	INTRON	ARMH3	ENSG00000120029.13	ENST00000370033.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	6.38871	6.588965	6.78922	3.86634e-11	1e-12	5.49052e-9	1.72912e-10
chr1	211818067	211818167	852242	0	-	0.51	(0.49,0.526]	chr1	94912	245	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	5.87576	6.58385	7.29194	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	59443284	59443384	7840788	0	-	0.49	(0.459,0.49]	chr14	722159	138	INTRON	INTRON	GPR135	ENSG00000181619.12	ENST00000481661.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	122	2	6.34731	6.580835	6.81436	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	33598428	33598528	2231324	0	-	0.44	(0.424,0.459]	chr3	215931	13	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	5.32282	6.578645	7.83447	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	180925162	180925261	2117923	0	+	0.515152	(0.49,0.526]	chr3	207454	92	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	6.54884	6.573040000000001	6.59724	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	109722241	109722340	2994332	0	-	0.50505	(0.49,0.526]	chr4	280258	31	INTRON	INTRON	PLA2G12A	ENSG00000123739.11	ENST00000243501.10:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	6.54884	6.573040000000001	6.59724	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	215596170	215596270	431152	0	+	0.4	(0.392,0.424]	chr1	46389	3	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	6.47592	6.572015	6.66811	3.31901e-12	1e-12	5.37234e-10	1.73382e-10
chr13	51372108	51372208	7528240	0	-	0.39	(0.36,0.392]	chr13	692425	24	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000483441.5:ENST00000490542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	6.19731	6.564735	6.93216	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	170146964	170147058	2490316	0	-	0.43617	(0.424,0.459]	chr3	238528	11	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	5.92021	6.562145	7.20408	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	2756033	2756133	8304794	0	+	0.43	(0.424,0.459]	chr16	773097	3	SS3_PROX	SS3_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	261	2	6.37859	6.5576	6.73661	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	61200349	61200448	1456382	0	-	0.444444	(0.424,0.459]	chr2	151283	70	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1:ENST00000463046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	88	2	5.44785	6.55659	7.66533	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	135346922	135347021	1569642	0	-	0.414141	(0.392,0.424]	chr2	162826	9	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000472452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	6.15804	6.55654	6.95504	6.43194e-10	1e-12	7.74888e-8	1.73382e-10
chr12	111844818	111844917	7024199	0	+	0.515152	(0.49,0.526]	chr12	642842	15	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	195	2	6.30766	6.5564599999999995	6.80526	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	112938593	112938692	728056	0	-	0.323232	(0.32,0.36]	chr1	78002	27	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	6.15083	6.554265	6.9577	1.52443e-9	1e-12	1.74447e-7	1.72912e-10
chr14	69385870	69385969	7859816	0	-	0.474747	(0.459,0.49]	chr14	723863	49	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	5.48326	6.554214999999999	7.62517	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	123512459	123512558	7314350	0	-	0.535354	(0.526,0.57]	chr12	675726	126	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	103	2	5.34441	6.55166	7.75891	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	48868349	48868438	9523907	0	-	0.426966	(0.424,0.459]	chr19	940725	4	UTR5	UTR5:EXON_MRNA	PLEKHA4	ENSG00000105559.12	ENST00000263265.11:ENST00000355496.9	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	5.66889	6.549765000000001	7.43064	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	127828982	127829078	2736493	0	+	0.291667	[0,0.32]	chr4	260091	12	INTRON	INTRON	HSPA4L	ENSG00000164070.12	ENST00000508776.5:ENST00000296464.9:ENST00000505726.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	6.45967	6.548215	6.63676	2.0258e-11	1.39611e-12	2.97161e-9	2.35903e-10
chr15	50931271	50931371	7976403	0	+	0.54	(0.526,0.57]	chr15	737876	3	SS5_PROX	SS5_PROX:INTRON	AP4E1	ENSG00000081014.11	ENST00000561441.5:ENST00000561393.5:ENST00000558439.5:ENST00000261842.10:ENST00000560508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	6.32958	6.54757	6.76556	1.19194e-12	1e-12	2.04402e-10	1.72912e-10
chr20	14192414	14192514	9585235	0	+	0.42	(0.392,0.424]	chr20	948045	1063	INTRON	INTRON	MACROD2	ENSG00000172264.18	ENST00000217246.8:ENST00000477147.5:ENST00000684519.1:ENST00000642719.1:ENST00000494602.5:ENST00000490428.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	6.20407	6.545484999999999	6.8869	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr2	46309422	46309522	1017040	0	+	0.37	(0.36,0.392]	chr2	109663	111	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	6.31702	6.54523	6.77344	7.38095e-11	1e-12	1.00784e-8	1.72912e-10
chr2	71333577	71333661	1070283	0	+	0.369048	(0.36,0.392]	chr2	113700	1	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	6.39047	6.545125	6.69978	3.80762e-11	1e-12	5.38572e-9	1.73382e-10
chr15	72728294	72728394	8036252	0	+	0.47	(0.459,0.49]	chr15	742307	3	SS5_PROX	SS5_PROX:INTRON	BBS4	ENSG00000140463.14	ENST00000395205.6:ENST00000566400.5:ENST00000561914.5:ENST00000268057.9:ENST00000567279.5:ENST00000562084.5:ENST00000569338.5:ENST00000562219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	6.23277	6.5426850000000005	6.8526	1.44494e-11	1e-12	2.19068e-9	1.72912e-10
chr5	93640600	93640700	3539315	0	-	0.26	[0,0.32]	chr5	322878	191	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	6.15712	6.5408550000000005	6.92459	3.56277e-9	1e-12	3.88104e-7	1.73382e-10
chr4	41565273	41565372	2612344	0	+	0.444444	(0.424,0.459]	chr4	250104	135	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1:ENST00000503057.6:ENST00000511496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	130	2	5.88379	6.539440000000001	7.19509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	16258062	16258162	8659814	0	+	0.44	(0.424,0.459]	chr17	818847	236	INTRON	INTRON	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	6.03045	6.539054999999999	7.04766	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	110492920	110492995	7277447	0	-	0.333333	(0.32,0.36]	chr12	670752	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000552130.6:ENST00000447578.6:ENST00000546588.1:ENST00000548539.1:ENST00000549970.5:ENST00000548259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	6.19537	6.535645	6.87592	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	53674693	53674788	7171098	0	-	0.484211	(0.459,0.49]	chr12	660368	5	INTRON	INTRON	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	6.53379	6.533875	6.53396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	183816346	183816446	2805289	0	+	0.37	(0.36,0.392]	chr4	265317	179	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	6.46975	6.53271	6.59567	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	136408598	136408698	5767015	0	-	0.59	(0.57,0.629]	chr9	518324	2	SS5_PROX	SS5_PROX:INTRON	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000371723.4:ENST00000446833.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	6.35787	6.532685	6.7075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	7923560	7923660	2832826	0	-	0.49	(0.459,0.49]	chr4	268413	511	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000358461.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	6.39121	6.530545	6.66988	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	145963461	145963537	749928	0	-	0.473684	(0.459,0.49]	chr1	80549	3	UTR5	UTR5:EXON_MRNA	ANKRD34A	ENSG00000272031.3	ENST00000606888.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	6.46061	6.53049	6.60037	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	14459520	14459620	3124921	0	+	0.44	(0.424,0.459]	chr5	289383	178	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000515710.1:ENST00000639876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	6.1639	6.528885	6.89387	1.54441e-10	1e-12	2.03038e-8	1.72912e-10
chr15	62029410	62029508	8206839	0	-	0.459184	(0.424,0.459]	chr15	760807	6	INTRON	INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	5.76515	6.52732	7.28949	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	202954140	202954240	839645	0	-	0.4	(0.392,0.424]	chr1	93162	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	6.46349	6.526540000000001	6.58959	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	179003160	179003260	2500748	0	-	0.47	(0.459,0.49]	chr3	239303	203	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1	protein_coding	protein_coding	protein_coding	protein_coding	10	301	2	6.33884	6.52344	6.70804	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	21158571	21158671	537582	0	-	0.4	(0.392,0.424]	chr1	59083	456	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	6.15804	6.5232600000000005	6.88848	6.43194e-10	1e-12	7.74888e-8	1.73382e-10
chr12	106361984	106362083	7010250	0	+	0.444444	(0.424,0.459]	chr12	640691	34	INTRON	INTRON	POLR3B	ENSG00000013503.10	ENST00000228347.9:ENST00000539066.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	6.35402	6.51915	6.68428	6.61571e-12	1e-12	1.03402e-9	1.72912e-10
chr5	143088817	143088917	3347581	0	+	0.44	(0.424,0.459]	chr5	307378	307	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000443674.5:ENST00000418236.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	6.35402	6.51915	6.68428	6.61571e-12	1e-12	1.03402e-9	1.72912e-10
chr17	43288953	43289053	8938351	0	-	0.5	(0.49,0.526]	chr17	859071	588	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3	130	2	6.01093	6.515295	7.01966	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	101906308	101906408	4494287	0	+	0.51	(0.49,0.526]	chr7	404874	870	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	6.15925	6.51347	6.86769	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227286628	227286728	876894	0	-	0.35	(0.32,0.36]	chr1	97605	321	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	6.25457	6.5131250000000005	6.77168	6.8782e-10	1e-12	8.23717e-8	1.73382e-10
chr1	119092524	119092624	738279	0	-	0.43	(0.424,0.459]	chr1	79213	101	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	6.26209	6.509835	6.75758	3.1274e-11	1e-12	4.50988e-9	1.72912e-10
chr12	64630633	64630733	6938179	0	+	0.43	(0.424,0.459]	chr12	635121	191	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	6.34698	6.5097000000000005	6.67242	1.28346e-11	1e-12	1.9463e-9	1.73382e-10
chr12	46216201	46216300	7152420	0	-	0.414141	(0.392,0.424]	chr12	656636	67	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	6.27196	6.508665000000001	6.74537	1.10884e-10	1e-12	1.47443e-8	1.73382e-10
chr3	36994433	36994532	1827477	0	+	0.383838	(0.36,0.392]	chr3	184886	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000476172.6:ENST00000673686.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	6.42264	6.50863	6.59462	1.2419e-11	1e-12	1.89925e-9	1.72912e-10
chr11	11860809	11860909	6319525	0	+	0.39	(0.36,0.392]	chr11	567315	182	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	6.49615	6.508605	6.52106	6.03728e-12	2.09599e-12	9.57482e-10	3.49782e-10
chr6	84221671	84221770	4118043	0	-	0.414141	(0.392,0.424]	chr6	375208	1	INTRON	INTRON	CEP162	ENSG00000135315.12	ENST00000257766.8:ENST00000617909.1:ENST00000403245.8:ENST00000497936.5:ENST00000435955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	5.59633	6.50775	7.41917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	55645898	55645994	7628569	0	+	0.302083	[0,0.32]	chr14	701988	11	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5:ENST00000554507.5:ENST00000554890.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	5.73936	6.5075	7.27564	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	37303131	37303231	1828701	0	+	0.35	(0.32,0.36]	chr3	185114	4	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	5.32018	6.505095	7.69001	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	92565503	92565603	6206818	0	-	0.43	(0.424,0.459]	chr10	554914	59	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	5.80085	6.502465	7.20408	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	20525065	20525164	9897900	0	+	0.383838	(0.36,0.392]	chr22	982607	3	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	6.39047	6.501825	6.61318	3.80762e-11	1e-12	5.38572e-9	1.73382e-10
chr8	123450020	123450120	5083239	0	+	0.37	(0.36,0.392]	chr8	454774	14	INTRON	INTRON	NTAQ1	ENSG00000156795.8	ENST00000650311.1:ENST00000523551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	6.39047	6.501825	6.61318	3.80762e-11	1e-12	5.38572e-9	1.73382e-10
chr12	6510331	6510429	6811381	0	+	0.408163	(0.392,0.424]	chr12	621773	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	44	874	2	6.43226	6.499625	6.56699	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	112953576	112953676	728206	0	-	0.36	(0.32,0.36]	chr1	78002	177	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	5.56306	6.498635	7.43421	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	38503893	38503993	4054978	0	-	0.36	(0.32,0.36]	chr6	369505	1006	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	5.99022	6.49719	7.00416	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	63697328	63697427	3803217	0	+	0.323232	(0.32,0.36]	chr6	348838	22	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	6.38871	6.493575	6.59844	3.86634e-11	2.46503e-12	5.49052e-9	4.05946e-10
chr5	98933908	98934008	3262619	0	+	0.34	(0.32,0.36]	chr5	300671	30	INTRON	INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	5.80228	6.490354999999999	7.17843	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	62574367	62574466	6931805	0	+	0.484848	(0.459,0.49]	chr12	634498	24	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000551307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	6.37294	6.486655	6.60037	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	69129719	69129818	1064189	0	+	0.333333	(0.32,0.36]	chr2	113069	47	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000303714.9:ENST00000409829.7:ENST00000409349.7:ENST00000681816.1:ENST00000482235.2:ENST00000679548.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	6.27467	6.485825	6.69698	2.42526e-10	1e-12	3.09612e-8	1.72912e-10
chr9	123804610	123804709	5730173	0	-	0.383838	(0.36,0.392]	chr9	513681	62	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	5.07869	6.48428	7.88987	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	2604861	2604960	8628507	0	+	0.393939	(0.392,0.424]	chr17	814605	101	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	5.94587	6.482265	7.01866	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	99003490	99003589	4486800	0	+	0.656566	(0.629,1]	chr7	403111	83	INTRON	INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	6.4404	6.479570000000001	6.51874	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	42515754	42515854	7955827	0	+	0.28	[0,0.32]	chr15	735727	4	SS5_PROX	SS5_PROX:INTRON	SNAP23	ENSG00000092531.10	ENST00000561526.5:ENST00000568451.5:ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000567094.5:ENST00000566327.5:ENST00000568331.5:ENST00000566035.5:ENST00000568859.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	6.22164	6.478485	6.73533	8.84932e-10	1e-12	1.05098e-7	1.72912e-10
chr21	42910515	42910614	9822274	0	+	0.525253	(0.49,0.526]	chr21	973982	16	UTR3	UTR3:EXON_MRNA	NDUFV3	ENSG00000160194.18	ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding	31	879	2	6.00459	6.4774899999999995	6.95039	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	139278740	139278840	3332986	0	+	0.45	(0.424,0.459]	chr5	305975	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG4	ENSG00000281398.4	ENST00000648842.1:ENST00000448190.6:ENST00000506188.5:ENST00000507692.5:ENST00000513259.5:ENST00000507197.5:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5	lncRNA	lncRNA	lncRNA	lncRNA	72	1530	2	6.14657	6.47541	6.80425	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	28147715	28147815	3750150	0	+	0.48	(0.459,0.49]	chr6	340008	29	INTRON	INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	218	2	6.43902	6.471995	6.50497	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	56835228	56835328	3177528	0	+	0.55	(0.526,0.57]	chr5	293505	188	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	6.07264	6.46968	6.86672	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	170398669	170398768	3982362	0	+	0.40404	(0.392,0.424]	chr6	361126	27	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	6.46349	6.467505	6.47152	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35887667	35887767	10027199	0	-	0.39	(0.36,0.392]	chr22	998794	472	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	6.15258	6.467025	6.78147	1.50388e-9	1e-12	1.73555e-7	1.73382e-10
chr11	12839806	12839906	6326557	0	+	0.41	(0.392,0.424]	chr11	567864	111	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000525312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	85	2	6.03696	6.46596	6.89496	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	23309060	23309156	7574178	0	+	0.583333	(0.57,0.629]	chr14	697523	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	338	2	5.99054	6.463	6.93546	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	67718583	67718680	5621485	0	-	0.587629	(0.57,0.629]	chr9	504105	13	EXON_LNCRNA	EXON_LNCRNA	FAM27E3	ENSG00000274026.2	ENST00000418795.3	lncRNA	lncRNA	lncRNA	lncRNA	2	94	2	5.54548	6.4626850000000005	7.37989	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	44728606	44728706	8722674	0	+	0.48	(0.459,0.49]	chr17	828482	52	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000528353.5:ENST00000528766.5:ENST00000315005.8:ENST00000526924.5:ENST00000526915.5:ENST00000525140.5:ENST00000531699.5:ENST00000532789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	6.46061	6.462479999999999	6.46435	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	51142742	51142842	7165644	0	-	0.35	(0.32,0.36]	chr12	659421	172	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	5.99022	6.460485	6.93075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	206594736	206594820	1288522	0	+	0.464286	(0.459,0.49]	chr2	133343	1	CDS	CDS:EXON_MRNA	ADAM23	ENSG00000114948.13	ENST00000264377.8:ENST00000374415.7	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	5.92508	6.4602	6.99532	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	124403831	124403930	10421914	0	-	0.484848	(0.459,0.49]	chrX	1034067	111	INTRON	INTRON	TENM1	ENSG00000009694.13	ENST00000371130.7:ENST00000422452.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	6.31416	6.4588	6.60344	3.08209e-12	1e-12	5.03634e-10	1.72912e-10
chr15	88470640	88470739	8073732	0	+	0.333333	(0.32,0.36]	chr15	746264	11	INTRON	INTRON	MRPS11	ENSG00000181991.16	ENST00000560708.5:ENST00000557974.5:ENST00000559323.5:ENST00000325844.9:ENST00000560850.1:ENST00000353598.6:ENST00000558406.5:ENST00000559557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	5.80228	6.45541	7.10854	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	94612619	94612718	5945815	0	+	0.525253	(0.49,0.526]	chr10	533234	29	UTR3	UTR3:EXON_MRNA	HELLS	ENSG00000119969.15	ENST00000371327.2	protein_coding	protein_coding	protein_coding	protein_coding	9	285	2	6.16582	6.45463	6.74344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91819893	91819992	5658286	0	-	0.454545	(0.424,0.459]	chr9	506482	437	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	178	2	6.31978	6.452985	6.58619	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	91965061	91965161	8083541	0	+	0.45	(0.424,0.459]	chr15	747793	231	INTRON	INTRON	SLCO3A1	ENSG00000176463.14	ENST00000318445.11:ENST00000553653.5:ENST00000424469.2:ENST00000555769.5:ENST00000556649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	5.94485	6.45116	6.95747	3.84993e-9	1e-12	4.17496e-7	1.72912e-10
chr4	95318628	95318728	2960007	0	-	0.49	(0.459,0.49]	chr4	278094	165	INTRON	INTRON	UNC5C	ENSG00000182168.15	ENST00000453304.6:ENST00000610318.4:ENST00000513796.5:ENST00000506749.5:ENST00000504962.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	6.06164	6.450365	6.83909	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	12870519	12870618	6326867	0	+	0.50505	(0.49,0.526]	chr11	567876	51	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	5.64478	6.4490549999999995	7.25333	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	18574048	18574148	9306976	0	+	0.43	(0.424,0.459]	chr19	901679	3	SS5_PROX	SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000598780.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	5.54786	6.44652	7.34518	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	3075588	3075687	2551373	0	+	0.666667	(0.629,1]	chr4	245347	1	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000649900.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	6.29024	6.446485	6.60273	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	48205019	48205118	9371625	0	+	0.383838	(0.36,0.392]	chr19	912256	4	INTRON	INTRON	ENSG00000268583	ENSG00000268583.2	ENST00000595201.2	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	6.27642	6.4448	6.61318	2.38946e-10	1e-12	3.06702e-8	1.73382e-10
chr4	139400605	139400705	2743775	0	+	0.37	(0.36,0.392]	chr4	260783	65	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	6.11568	6.44456	6.77344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	70236123	70236223	5188848	0	-	0.34	(0.32,0.36]	chr8	465118	190	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000519724.1:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	6.38871	6.44069	6.49267	3.86634e-11	1.53492e-11	5.49052e-9	2.28984e-9
chr9	110410099	110410191	5688831	0	-	0.293478	[0,0.32]	chr9	510064	8	INTRON	INTRON	SVEP1	ENSG00000165124.19	ENST00000374469.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	6.34555	6.438255	6.53096	1.33932e-10	1.06284e-11	1.78706e-8	1.63406e-9
chr10	21690135	21690234	5812106	0	+	0.30303	[0,0.32]	chr10	522914	12	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	5.21891	6.437855	7.6568	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	27379770	27379870	6583574	0	-	0.34	(0.32,0.36]	chr11	598879	1	SS5_PROX	SS5_PROX:INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	6.37853	6.436465	6.4944	1.01957e-10	6.14897e-12	1.36475e-8	9.707400000000001e-10
chr2	71347027	71347127	1070420	0	+	0.39	(0.36,0.392]	chr2	113712	48	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	5.89596	6.435955	6.97595	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	55095627	55095727	4390645	0	+	0.45	(0.424,0.459]	chr7	395429	517	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	133	2	5.75862	6.431184999999999	7.10375	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	196397074	196397172	2530934	0	-	0.510204	(0.49,0.526]	chr3	242628	31	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000413584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	6.01971	6.430575	6.84144	2.59274e-10	1e-12	3.28602e-8	1.72912e-10
chr13	32500815	32500914	7480701	0	-	0.393939	(0.392,0.424]	chr13	689139	108	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000473025.1:ENST00000674219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	6.04522	6.42938	6.81354	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	143476576	143476676	2462982	0	-	0.42	(0.392,0.424]	chr3	236419	90	INTRON	INTRON	SLC9A9	ENSG00000181804.15	ENST00000316549.11	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	6.20407	6.429325	6.65458	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr3	113726288	113726388	2384025	0	-	0.31	[0,0.32]	chr3	229526	18	INTRON	INTRON	NAA50	ENSG00000121579.14	ENST00000240922.8:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000493454.5:ENST00000481432.5:ENST00000493900.5:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	6.22164	6.4292	6.63676	8.84932e-10	1.39611e-12	1.05098e-7	2.35903e-10
chr7	138946113	138946213	4865758	0	-	0.32	[0,0.32]	chr7	435478	263	INTRON	INTRON	KIAA1549	ENSG00000122778.10	ENST00000422774.2:ENST00000440172.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	6.29279	6.4291	6.56541	5.12663e-10	2.98916e-12	6.28454e-8	4.91016e-10
chr16	2892030	2892130	8305110	0	+	0.53	(0.526,0.57]	chr16	773170	83	INTRON	INTRON	FLYWCH2	ENSG00000162076.13	ENST00000293981.10:ENST00000396958.8:ENST00000573965.1:ENST00000572006.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	6.32958	6.4282699999999995	6.52696	1.19194e-12	1e-12	2.04402e-10	1.72912e-10
chr1	46113147	46113247	601894	0	-	0.44	(0.424,0.459]	chr1	67526	320	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	5.80085	6.424255	7.04766	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	32094983	32095082	9088148	0	+	0.333333	(0.32,0.36]	chr18	878317	17	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	6.25457	6.423719999999999	6.59287	6.8782e-10	1.01197e-12	8.23717e-8	1.74544e-10
chr11	9798798	9798897	6315945	0	+	0.59596	(0.57,0.629]	chr11	566962	77	INTRON	INTRON	SBF2-AS1	ENSG00000246273.8	ENST00000663578.1:ENST00000498905.2:ENST00000650092.1:ENST00000658574.1:ENST00000664105.1:ENST00000525636.5:ENST00000534671.1	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	5.99148	6.422245	6.85301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	96158661	96158761	7415174	0	+	0.42	(0.392,0.424]	chr13	683824	667	INTRON	INTRON	HS6ST3	ENSG00000185352.9	ENST00000376705.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	6.15804	6.413075	6.66811	6.43194e-10	1e-12	7.74888e-8	1.73382e-10
chrX	2364476	2364576	10252291	0	-	0.36	(0.32,0.36]	chrX	1021537	261	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	5.96926	6.411335	6.85341	3.15048e-8	1e-12	2.93512e-6	1.73382e-10
chr6	128486331	128486431	4192872	0	-	0.24	[0,0.32]	chr6	381442	766	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	6.15712	6.410525	6.66393	3.56277e-9	1e-12	3.88104e-7	1.73382e-10
chr4	24522785	24522884	2865121	0	-	0.40404	(0.392,0.424]	chr4	270032	21	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5	protein_coding	processed_transcript	protein_coding	processed_transcript	4	95	2	6.05114	6.409140000000001	6.76714	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	170939721	170939821	3387033	0	+	0.34	(0.32,0.36]	chr5	310914	148	INTRON	INTRON	RANBP17	ENSG00000204764.14	ENST00000389118.8:ENST00000523189.6:ENST00000522533.5:ENST00000522066.5:ENST00000519949.5:ENST00000519256.5:ENST00000520864.5:ENST00000520879.5:ENST00000522380.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	5.43777	6.408925	7.38008	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	112592019	112592119	5464934	0	+	0.48	(0.459,0.49]	chr9	488117	164	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	6.21575	6.40806	6.60037	2.91337e-11	1e-12	4.19646e-9	1.73382e-10
chr12	57404194	57404294	7181961	0	-	0.5	(0.49,0.526]	chr12	663024	80	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	6.26413	6.406485	6.54884	4.10783e-12	1e-12	6.60034e-10	1.72912e-10
chr19	1372487	1372584	9261487	0	+	0.597938	(0.57,0.629]	chr19	892329	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1:ENST00000586067.1:ENST00000591627.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	5.69707	6.404775	7.11248	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	72184079	72184176	10161375	0	+	0.443299	(0.424,0.459]	chrX	1012893	18	INTRON	INTRON	PIN4	ENSG00000102309.15	ENST00000373662.4:ENST00000423432.6:ENST00000664196.1:ENST00000218432.10:ENST00000373669.8:ENST00000439980.7:ENST00000652108.2:ENST00000496835.7:ENST00000446576.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	5.60095	6.402515	7.20408	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	122341301	122341401	3298788	0	+	0.33	(0.32,0.36]	chr5	302992	40	INTRON	INTRON	SNCAIP	ENSG00000064692.20	ENST00000514467.5:ENST00000510658.5:ENST00000506272.5:ENST00000508681.5:ENST00000509154.6:ENST00000542191.5:ENST00000512385.5:ENST00000514497.6:ENST00000261367.11:ENST00000261368.13:ENST00000509023.5:ENST00000510003.5:ENST00000508017.5:ENST00000509652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	6.01536	6.402290000000001	6.78922	9.59726e-9	1e-12	9.74486e-7	1.72912e-10
chr17	32460757	32460857	8701071	0	+	0.32	[0,0.32]	chr17	824149	55	INTRON	INTRON	PSMD11	ENSG00000108671.11	ENST00000578213.5:ENST00000649012.1:ENST00000457654.6:ENST00000578397.5:ENST00000579451.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	5.72139	6.39745	7.07351	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	86769910	86770010	5922675	0	+	0.56	(0.526,0.57]	chr10	530897	126	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	6.39102	6.395065000000001	6.39911	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	102922087	102922186	5967076	0	+	0.262626	[0,0.32]	chr10	536032	16	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000369875.3:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	6.03217	6.394159999999999	6.75615	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	69663092	69663191	8423066	0	+	0.444444	(0.424,0.459]	chr16	788984	28	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000563474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	6.26209	6.393775	6.52546	3.1274e-11	1e-12	4.50988e-9	1.72912e-10
chr17	5488293	5488392	8637826	0	+	0.414141	(0.392,0.424]	chr17	816040	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	MIS12	ENSG00000167842.16	ENST00000576988.1:ENST00000576570.5:ENST00000573759.1:ENST00000611091.5:ENST00000381165.3	protein_coding	protein_coding	protein_coding	protein_coding	20	341	2	5.70095	6.393599999999999	7.08625	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	25073034	25073106	7927984	0	+	0.486111	(0.459,0.49]	chr15	731718	2	SS5_PROX	SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	5.69482	6.392815000000001	7.09081	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	149439221	149439321	4884534	0	-	0.41	(0.392,0.424]	chr7	437166	20	INTRON	INTRON	ZNF777	ENSG00000196453.8	ENST00000247930.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	6.20407	6.386044999999999	6.56802	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr1	161877461	161877561	318943	0	+	0.43	(0.424,0.459]	chr1	36131	60	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	6.24871	6.38535	6.52199	6.7358e-11	1e-12	9.26681e-9	1.73382e-10
chrX	41890175	41890274	10329963	0	-	0.393939	(0.392,0.424]	chrX	1025546	366	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000644770.1:ENST00000468986.7:ENST00000477823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	5.81564	6.38534	6.95504	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	32485900	32485996	9935962	0	+	0.34375	(0.32,0.36]	chr22	987205	3	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	6.27467	6.38367	6.49267	2.42526e-10	1.53492e-11	3.09612e-8	2.28984e-9
chr5	110747662	110747762	3274194	0	+	0.34	(0.32,0.36]	chr5	301461	1	SS3_PROX	SS3_PROX:INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	6.27467	6.38367	6.49267	2.42526e-10	1.53492e-11	3.09612e-8	2.28984e-9
chr4	16270485	16270585	2579775	0	+	0.38	(0.36,0.392]	chr4	247747	124	INTRON	INTRON	TAPT1-AS1	ENSG00000263327.6	ENST00000573950.5	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	6.0793	6.38305	6.6868	2.64141e-9	1e-12	2.93923e-7	1.72912e-10
chr1	231554694	231554792	455438	0	+	0.336735	(0.32,0.36]	chr1	49428	1	INTRON	INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	5.7576	6.380879999999999	7.00416	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	1963039	1963106	8492205	0	-	0.537313	(0.526,0.57]	chr16	795422	2	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2:SNORA64	ENSG00000140988.16:ENSG00000207405.1	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000384674.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay	114	3117	2	6.26038	6.380115	6.49985	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	19944062	19944160	9895948	0	+	0.459184	(0.424,0.459]	chr22	982238	18	INTRON	INTRON	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	89	2	6.06123	6.379685	6.69814	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	92814051	92814151	7740382	0	+	0.35	(0.32,0.36]	chr14	710394	19	INTRON	INTRON	GOLGA5	ENSG00000066455.13	ENST00000163416.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	5.6709	6.37246	7.07402	1.02884e-12	1e-12	1.77613e-10	1.73382e-10
chr14	37133583	37133683	7813045	0	-	0.4	(0.392,0.424]	chr14	719060	2582	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	6.09023	6.3724050000000005	6.65458	1.13607e-9	1e-12	1.32549e-7	1.72912e-10
chr3	131384938	131385038	1997346	0	+	0.52	(0.49,0.526]	chr3	201012	16	UTR3	UTR3:EXON_MRNA	NUDT16	ENSG00000198585.12	ENST00000537561.5:ENST00000521288.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	6.18717	6.368005	6.54884	1.66076e-11	1e-12	2.50009e-9	1.72912e-10
chr5	17233409	17233509	3132480	0	+	0.48	(0.459,0.49]	chr5	289659	152	INTRON	INTRON	BASP1	ENSG00000176788.9	ENST00000606445.1:ENST00000616743.1:ENST00000322611.4	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	6.19265	6.365385	6.53812	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	161821661	161821760	318377	0	+	0.444444	(0.424,0.459]	chr1	36088	1	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	5.73724	6.364380000000001	6.99152	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227311807	227311907	877146	0	-	0.47	(0.459,0.49]	chr1	97605	573	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	5.77423	6.359665	6.9451	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	106567272	106567372	7563195	0	-	0.52	(0.49,0.526]	chr13	695639	3	SS5_PROX	SS5_PROX:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	6.10587	6.359085	6.6123	6.5597e-11	1e-12	9.0398e-9	1.72912e-10
chr1	1871569	1871669	495596	0	-	0.52	(0.49,0.526]	chr1	53110	315	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	6.1814	6.358945	6.53649	2.69895e-11	1e-12	3.91566e-9	1.73382e-10
chr1	32819207	32819300	100550	0	+	0.387097	(0.36,0.392]	chr1	11332	5	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000482212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	5.64515	6.356870000000001	7.06859	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	50723045	50723145	8741685	0	+	0.34	(0.32,0.36]	chr17	832098	3	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	6.01536	6.3561700000000005	6.69698	9.59726e-9	1e-12	9.74486e-7	1.72912e-10
chr7	127358085	127358185	4839832	0	-	0.38	(0.36,0.392]	chr7	433417	79	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000485577.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	26	2	6.31702	6.353745	6.39047	7.38095e-11	3.80762e-11	1.00784e-8	5.38572e-9
chr17	4684308	4684408	8852366	0	-	0.4	(0.392,0.424]	chr17	845932	8	INTRON	INTRON	PELP1	ENSG00000141456.16	ENST00000572293.7:ENST00000301396.8:ENST00000436683.6:ENST00000574876.5:ENST00000573523.5:ENST00000575329.5:ENST00000570571.5:ENST00000570387.5:ENST00000575101.1:ENST00000571170.1:ENST00000570823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	5.68223	6.352765	7.0233	1.931e-7	1e-12	1.56398e-5	1.72912e-10
chr19	34441652	34441751	9328542	0	+	0.474747	(0.459,0.49]	chr19	904394	25	INTRON	INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	5.92066	6.3518349999999995	6.78301	2.70029e-9	1e-12	2.98805e-7	1.73382e-10
chr17	13868354	13868453	8877058	0	-	0.454545	(0.424,0.459]	chr17	849479	27	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000577798.6:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	6.34698	6.3505	6.35402	1.28346e-11	6.61571e-12	1.9463e-9	1.03402e-9
chr12	27000879	27000977	7127584	0	-	0.387755	(0.36,0.392]	chr12	654528	7	INTRON	INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5:ENST00000512808.2:ENST00000545600.1:ENST00000539399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	6.20305	6.349600000000001	6.49615	4.41027e-10	6.03728e-12	5.4191e-8	9.57482e-10
chrX	7386397	7386497	10073203	0	+	0.39	(0.36,0.392]	chrX	1005189	317	INTRON	INTRON	STS	ENSG00000101846.9	ENST00000664306.2:ENST00000658154.1:ENST00000660000.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	6.20305	6.349600000000001	6.49615	4.41027e-10	6.03728e-12	5.4191e-8	9.57482e-10
chr1	153897161	153897261	769345	0	-	0.49	(0.459,0.49]	chr1	84224	103	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	6.30207	6.34664	6.39121	6.43707e-12	1e-12	1.01538e-9	1.73382e-10
chr15	66448386	66448485	8011404	0	+	0.50505	(0.49,0.526]	chr15	740822	33	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	6.01971	6.3464	6.67309	2.59274e-10	1e-12	3.28602e-8	1.72912e-10
chr3	172791954	172792054	2081372	0	+	0.41	(0.392,0.424]	chr3	206328	50	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	6.30959	6.343565	6.37754	3.72697e-11	1.91154e-11	5.32557e-9	2.81903e-9
chr7	17908538	17908638	4647942	0	-	0.31	[0,0.32]	chr7	417814	8	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5:ENST00000482558.5:ENST00000409604.1:ENST00000475800.5:ENST00000474067.5:ENST00000471744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	5.76944	6.341875	6.91431	2.56854e-7	1e-12	2.02856e-5	1.72912e-10
chr11	47151200	47151300	6393358	0	+	0.49	(0.459,0.49]	chr11	572794	131	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000525895.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1:ENST00000529980.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	6.1465	6.340145	6.53379	6.25785e-11	1e-12	8.69617e-9	1.72912e-10
chr11	122131913	122132013	6763530	0	-	0.37	(0.36,0.392]	chr11	617560	152	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000650497.1:ENST00000664908.1:ENST00000648209.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000656793.1:ENST00000663296.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000660603.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000666085.1:ENST00000534297.2:ENST00000534782.4	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	6.0793	6.3369599999999995	6.59462	2.64141e-9	1e-12	2.93923e-7	1.72912e-10
chr22	41097378	41097478	9951052	0	+	0.31	[0,0.32]	chr22	989833	39	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.93642	6.335875	6.73533	3.87502e-8	1e-12	3.55241e-6	1.72912e-10
chr2	222597832	222597932	1702566	0	-	0.32	[0,0.32]	chr2	175146	255	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	6.10207	6.333740000000001	6.56541	2.98916e-12	1e-12	4.91016e-10	1.72912e-10
chr12	116141991	116142091	7290339	0	-	0.46	(0.459,0.49]	chr12	672490	301	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	5.72023	6.332665	6.9451	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	31455247	31455346	7135049	0	-	0.363636	(0.36,0.392]	chr12	655359	24	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000546299.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	5.80422	6.3315	6.85878	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	67163354	67163446	4999001	0	+	0.445652	(0.424,0.459]	chr8	448604	2	SS3_PROX	SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	146	2	6.26337	6.330965	6.39856	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	150426623	150426723	294458	0	+	0.39	(0.36,0.392]	chr1	31092	85	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	5.72687	6.329515	6.93216	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	30067542	30067603	3751560	0	+	0.491803	(0.49,0.526]	chr6	340460	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5	protein_coding	protein_coding	protein_coding	protein_coding	4	143	2	6.24437	6.32829	6.41221	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	179972300	179972400	366506	0	+	0.39	(0.36,0.392]	chr1	39643	168	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	5.38501	6.32605	7.26709	2.7967e-11	1e-12	4.06246e-9	1.72912e-10
chr5	5423896	5423995	3112256	0	+	0.363636	(0.36,0.392]	chr5	288326	5	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9:ENST00000505464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	5.79453	6.32485	6.85517	9.49031e-8	1e-12	8.06088e-6	1.72912e-10
chrX	70457200	70457300	10154454	0	+	0.48	(0.459,0.49]	chrX	1011951	7	INTRON	INTRON	DLG3	ENSG00000082458.12	ENST00000374360.8:ENST00000194900.8:ENST00000463252.5:ENST00000374355.7:ENST00000542398.1:ENST00000489733.5:ENST00000494493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	5.58315	6.324075000000001	7.065	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	124604470	124604570	1977043	0	+	0.32	[0,0.32]	chr3	198946	192	INTRON	INTRON	KALRN	ENSG00000160145.16	ENST00000682506.1:ENST00000683592.1:ENST00000360013.7:ENST00000354186.8:ENST00000684360.1:ENST00000393496.5:ENST00000471431.1:ENST00000682290.1:ENST00000291478.9:ENST00000682363.1:ENST00000454902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	6.22164	6.31921	6.41678	8.84932e-10	7.3754e-11	1.05098e-7	1.00949e-8
chr3	136690338	136690438	2448117	0	-	0.49	(0.459,0.49]	chr3	234921	590	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	5.54492	6.317865	7.09081	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	111392446	111392519	4817628	0	-	0.438356	(0.424,0.459]	chr7	431936	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	5.28862	6.3169	7.34518	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	61537375	61537461	1459858	0	-	0.790698	(0.629,1]	chr2	151817	4	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	183	2	6.05017	6.313715	6.57726	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	70240688	70240788	3498484	0	-	0.37	(0.36,0.392]	chr5	320243	145	INTRON	INTRON	GUSBP14	ENSG00000253816.3	ENST00000514522.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	38	2	5.47714	6.309775	7.14241	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr15	63543271	63543368	8002626	0	+	0.319588	[0,0.32]	chr15	739914	7	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	6.08606	6.30851	6.53096	5.85315e-9	1.06284e-11	6.18098e-7	1.63406e-9
chr4	106318403	106318501	2705190	0	+	0.316327	[0,0.32]	chr4	257376	20	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	AIMP1	ENSG00000164022.18	ENST00000510207.5:ENST00000358008.7:ENST00000682186.1:ENST00000684504.1:ENST00000442366.6:ENST00000672341.1:ENST00000394701.6:ENST00000672337.1:ENST00000672003.1:ENST00000671868.1:ENST00000673123.1:ENST00000672911.1:ENST00000672328.1:ENST00000672285.1:ENST00000671960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	117	2	6.07204	6.308475	6.54491	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	37084912	37085011	9739998	0	-	0.474747	(0.459,0.49]	chr20	964769	25	INTRON	INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	6.23277	6.308145	6.38352	1.44494e-11	1.10534e-12	2.19068e-9	1.89699e-10
chr7	5742712	5742811	4618992	0	-	0.484848	(0.459,0.49]	chr7	416024	5	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000411812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	6.30207	6.308115	6.31416	6.43707e-12	3.08209e-12	1.01538e-9	5.03634e-10
chr1	92374139	92374239	233056	0	+	0.38	(0.36,0.392]	chr1	23273	279	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	4.96608	6.308025	7.64997	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	83052071	83052170	2670698	0	+	0.434343	(0.424,0.459]	chr4	254658	17	INTRON	INTRON	COPS4	ENSG00000138663.9	ENST00000509093.5:ENST00000509317.5:ENST00000264389.7:ENST00000506443.5:ENST00000503682.5:ENST00000511653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	6.26209	6.3045349999999996	6.34698	3.1274e-11	1.28346e-11	4.50988e-9	1.9463e-9
chr17	45624314	45624412	8725641	0	+	0.44898	(0.424,0.459]	chr17	829019	19	INTRON	INTRON	LINC02210	ENSG00000204650.14	ENST00000585118.5:ENST00000591271.5:ENST00000582491.5:ENST00000585122.5:ENST00000583740.5:ENST00000455565.5:ENST00000580220.2	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	2	68	2	6.18146	6.30261	6.42376	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	155673714	155673814	4595979	0	+	0.45	(0.424,0.459]	chr7	413728	4	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	6.18146	6.30261	6.42376	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	172994174	172994274	3393280	0	+	0.52	(0.49,0.526]	chr5	311326	99	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	6.18717	6.300025	6.41288	1.66076e-11	1e-12	2.50009e-9	1.72912e-10
chr12	45887388	45887487	6892595	0	+	0.30303	[0,0.32]	chr12	628444	261	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.76944	6.298515	6.82759	2.56854e-7	1e-12	2.02856e-5	1.72912e-10
chr12	51051206	51051301	6911453	0	+	0.463158	(0.459,0.49]	chr12	630185	17	INTRON	INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000546992.5:ENST00000548401.1:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	6.12393	6.29414	6.46435	1.31318e-10	1e-12	1.71854e-8	1.73382e-10
chr5	37479233	37479333	3152841	0	+	0.43	(0.424,0.459]	chr5	291402	355	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	6.14325	6.29185	6.44045	3.56746e-10	1.52944e-12	4.46854e-8	2.57541e-10
chr5	62343633	62343733	3183921	0	+	0.45	(0.424,0.459]	chr5	293883	314	INTRON	INTRON	KIF2A	ENSG00000068796.19	ENST00000401507.7:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000514082.6:ENST00000675085.1:ENST00000504883.2:ENST00000381103.7:ENST00000676271.1:ENST00000512541.5:ENST00000674733.1:ENST00000506857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	6.14325	6.29185	6.44045	3.56746e-10	1.52944e-12	4.46854e-8	2.57541e-10
chr2	113944252	113944352	1128935	0	+	0.37	(0.36,0.392]	chr2	120946	15	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	6.18911	6.291740000000001	6.39437	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	200759938	200760038	394225	0	+	0.41	(0.392,0.424]	chr1	42304	196	INTRON	INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	6.27196	6.290775	6.30959	1.10884e-10	3.72697e-11	1.47443e-8	5.32557e-9
chr1	50937776	50937876	614332	0	-	0.39	(0.36,0.392]	chr1	68288	794	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	5.30494	6.286015	7.26709	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	15017260	15017359	9843176	0	-	0.545455	(0.526,0.57]	chr21	976988	24	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	6.17957	6.285295	6.39102	1.82673e-11	1e-12	2.71431e-9	1.72912e-10
chr1	67408108	67408208	645937	0	-	0.4	(0.392,0.424]	chr1	71777	4	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	5.74972	6.28421	6.8187	1.25981e-7	1e-12	1.05791e-5	1.73382e-10
chr19	15395456	15395556	9449558	0	-	0.5	(0.49,0.526]	chr19	928475	118	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	6.09518	6.2841249999999995	6.47307	1.11716e-10	1e-12	1.47877e-8	1.73382e-10
chr5	116240136	116240236	3287233	0	+	0.32	[0,0.32]	chr5	302259	1056	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	5.80976	6.283245	6.75673	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	235506239	235506339	1346273	0	+	0.41	(0.392,0.424]	chr2	139195	110	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	6.15804	6.282975	6.40791	6.43194e-10	6.88871e-12	7.74888e-8	1.07164e-9
chr1	52509095	52509195	618842	0	-	0.36	(0.32,0.36]	chr1	68962	1	SS5_PROX	SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	5.32018	6.282635	7.24509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	174654784	174654884	1619960	0	-	0.56	(0.526,0.57]	chr2	167358	203	INTRON	INTRON	WIPF1	ENSG00000115935.18	ENST00000272746.9:ENST00000359761.7:ENST00000409415.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	5.60673	6.2811	6.95547	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149845310	149845410	2040546	0	+	0.34	(0.32,0.36]	chr3	204062	224	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.96926	6.281065	6.59287	3.15048e-8	1.01197e-12	2.93512e-6	1.74544e-10
chrX	132417197	132417297	10434436	0	-	0.36	(0.32,0.36]	chrX	1034948	37	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370857.7:ENST00000370844.5:ENST00000370839.7:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.96926	6.281065	6.59287	3.15048e-8	1.01197e-12	2.93512e-6	1.74544e-10
chr6	165684130	165684230	4267579	0	-	0.46	(0.459,0.49]	chr6	386874	210	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	6.02328	6.2806999999999995	6.53812	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	8684169	8684258	6312467	0	+	0.47191	(0.459,0.49]	chr11	566444	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	473	2	6.06723	6.27845	6.48967	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	8701778	8701876	6551545	0	-	0.510204	(0.49,0.526]	chr11	595644	14	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000534278.5:ENST00000530438.5:ENST00000526062.5:ENST00000532871.3:ENST00000533081.5:ENST00000526701.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	5.30201	6.27836	7.25471	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35800600	35800700	10026323	0	-	0.41	(0.392,0.424]	chr22	998771	185	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	5.59633	6.27652	6.95671	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	63854515	63854615	6410134	0	+	0.45	(0.424,0.459]	chr11	575628	41	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.94485	6.275955	6.60706	3.84993e-9	1e-12	4.17496e-7	1.72912e-10
chr18	26595006	26595105	9200917	0	-	0.454545	(0.424,0.459]	chr18	886486	129	INTRON	INTRON	KCTD1	ENSG00000134504.14	ENST00000579973.5:ENST00000317932.11:ENST00000580191.5:ENST00000584630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	6.16142	6.273455	6.38549	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	56665473	56665568	2291246	0	-	0.452632	(0.424,0.459]	chr3	224256	13	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9:ENST00000478052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	5.73724	6.27294	6.80864	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	14611208	14611308	3125984	0	+	0.42	(0.392,0.424]	chr5	289563	10	UTR3	UTR3:EXON_MRNA:INTRON	OTULINL	ENSG00000145569.6	ENST00000274217.4:ENST00000506258.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	5.86962	6.26783	6.66604	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	9185914	9186012	6556010	0	-	0.387755	(0.36,0.392]	chr11	596167	45	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	6.22601	6.266845	6.30768	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	63168113	63168213	8771976	0	+	0.44	(0.424,0.459]	chr17	834656	130	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8:ENST00000580068.5:ENST00000580466.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	5.70426	6.265795	6.82733	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	7472099	7472198	8861156	0	-	0.484848	(0.459,0.49]	chr17	847644	44	INTRON	INTRON	ZBTB4	ENSG00000174282.12	ENST00000311403.4:ENST00000380599.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	6.21575	6.2649550000000005	6.31416	2.91337e-11	3.08209e-12	4.19646e-9	5.03634e-10
chr8	43063501	43063600	4978524	0	+	0.343434	(0.32,0.36]	chr8	446741	40	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	6.15083	6.26468	6.37853	1.52443e-9	1.01957e-10	1.74447e-7	1.36475e-8
chr6	57366171	57366271	3799129	0	+	0.34	(0.32,0.36]	chr6	348632	398	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000419977.4:ENST00000672107.1:ENST00000615550.5:ENST00000671770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	6.25457	6.264620000000001	6.27467	6.8782e-10	2.42526e-10	8.23717e-8	3.09612e-8
chr3	157156336	157156435	2477633	0	-	0.30303	[0,0.32]	chr3	237602	18	INTRON	INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	5.52195	6.26196	7.00197	1.99332e-11	1e-12	2.93023e-9	1.73382e-10
chr3	139386419	139386517	2453012	0	-	0.5	(0.49,0.526]	chr3	235483	6	INTRON	INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5:ENST00000504295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	5.5109	6.2597249999999995	7.00855	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	2660159	2660259	9038482	0	+	0.51	(0.49,0.526]	chr18	874031	35	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	6.0445	6.258785	6.47307	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	63438621	63438721	6148649	0	-	0.48	(0.459,0.49]	chr10	550098	578	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	85	2	4.79021	6.258405	7.7266	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	57771420	57771519	6398597	0	+	0.424242	(0.392,0.424]	chr11	573716	69	INTRON	INTRON	CTNND1	ENSG00000198561.16	ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	5.11675	6.25807	7.39939	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	121879380	121879479	6276979	0	-	0.383838	(0.36,0.392]	chr10	561699	4	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	6.16259	6.256615	6.35064	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	117286996	117287095	6268322	0	-	0.363636	(0.36,0.392]	chr10	560787	8	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000482496.5:ENST00000489302.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	5.72687	6.25417	6.78147	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	118730510	118730610	6271471	0	-	0.34	(0.32,0.36]	chr10	560997	1	SS3_PROX	SS3_PROX:INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5:ENST00000477583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	6.01536	6.254015000000001	6.49267	9.59726e-9	1.53492e-11	9.74486e-7	2.28984e-9
chr17	80555681	80555781	8814442	0	+	0.36	(0.32,0.36]	chr17	840381	95	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	6.01536	6.254015000000001	6.49267	9.59726e-9	1.53492e-11	9.74486e-7	2.28984e-9
chr9	95311746	95311845	5667467	0	-	0.353535	(0.32,0.36]	chr9	507577	10	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000490972.7:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000650176.1:ENST00000648415.1:ENST00000696262.1:ENST00000649611.1:ENST00000696263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	6.01536	6.254015000000001	6.49267	9.59726e-9	1.53492e-11	9.74486e-7	2.28984e-9
chr5	37535284	37535384	3153405	0	+	0.32	[0,0.32]	chr5	291417	183	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	6.23247	6.2531099999999995	6.27375	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	125313237	125313337	5087219	0	+	0.41	(0.392,0.424]	chr8	455136	1306	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	8	152	2	5.91311	6.252015	6.59092	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	66748218	66748318	8012795	0	+	0.38	(0.36,0.392]	chr15	741000	307	INTRON	INTRON	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	5.64515	6.251965	6.85878	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	174009412	174009512	807621	0	-	0.32	[0,0.32]	chr1	89992	159	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	6.08606	6.2514199999999995	6.41678	5.85315e-9	7.3754e-11	6.18098e-7	1.00949e-8
chr18	12501488	12501588	9181108	0	-	0.51	(0.49,0.526]	chr18	884872	50	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000592156.5:ENST00000487491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	6.09518	6.250954999999999	6.40673	1.11716e-10	1e-12	1.47877e-8	1.73382e-10
chr10	23868006	23868106	5814905	0	+	0.42	(0.392,0.424]	chr10	523107	1724	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000481700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	151	2	5.60278	6.24981	6.89684	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155474687	155474787	776563	0	-	0.37	(0.36,0.392]	chr1	85727	117	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	5.56373	6.24812	6.93251	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	38570509	38570609	4055646	0	-	0.38	(0.36,0.392]	chr6	369512	656	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	5.72273	6.248085	6.77344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	36104103	36104202	9639300	0	+	0.494949	(0.49,0.526]	chr20	951847	108	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	5.92558	6.243945	6.56231	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	11165327	11165427	7087992	0	-	0.34	(0.32,0.36]	chr12	651870	438	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	72	2	5.73617	6.243805	6.75144	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	46525901	46526001	6894243	0	+	0.32	[0,0.32]	chr12	628512	308	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	9	123	2	5.64814	6.24278	6.83742	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	74129281	74129381	7701740	0	+	0.39	(0.36,0.392]	chr14	707883	151	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	6.20305	6.239735	6.27642	4.41027e-10	2.38946e-10	5.4191e-8	3.06702e-8
chr7	111537978	111538078	4819091	0	-	0.43	(0.424,0.459]	chr7	431966	50	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	5.73724	6.2396899999999995	6.74214	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	95791738	95791837	6471915	0	+	0.434343	(0.424,0.459]	chr11	584911	6	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	183	2	5.75149	6.237445	6.7234	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59145275	59145375	3473681	0	-	0.44	(0.424,0.459]	chr5	319179	538	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	130	2360	2	6.21452	6.23729	6.26006	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	156480298	156480397	1184844	0	+	0.525253	(0.49,0.526]	chr2	124843	37	INTRON	INTRON	GPD2	ENSG00000115159.16	ENST00000415049.5:ENST00000310454.10:ENST00000438166.7:ENST00000495851.5:ENST00000540309.5:ENST00000409861.5:ENST00000409125.8:ENST00000409674.5:ENST00000416888.5:ENST00000430992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	5.87576	6.2364999999999995	6.59724	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	32158462	32158562	3430773	0	-	0.47	(0.459,0.49]	chr5	315551	142	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	5.26449	6.235250000000001	7.20601	2.71516e-12	1e-12	4.4884e-10	1.72912e-10
chr3	56635745	56635843	2290937	0	-	0.377551	(0.36,0.392]	chr3	224202	14	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000431842.6:ENST00000493960.6:ENST00000355628.9:ENST00000614531.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	6.15258	6.2348	6.31702	1.50388e-9	7.38095e-11	1.73555e-7	1.00784e-8
chr1	163295643	163295743	791560	0	-	0.4	(0.392,0.424]	chr1	88542	467	INTRON	INTRON	RGS5	ENSG00000143248.13	ENST00000618415.4:ENST00000531954.5:ENST00000530241.5:ENST00000534288.5:ENST00000428971.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	6.09023	6.233885	6.37754	1.13607e-9	1.91154e-11	1.32549e-7	2.81903e-9
chr7	110822797	110822897	4811925	0	-	0.32	[0,0.32]	chr7	431911	1574	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	5.93642	6.23369	6.53096	3.87502e-8	1.06284e-11	3.55241e-6	1.63406e-9
chr8	25356284	25356383	4951269	0	+	0.252525	[0,0.32]	chr8	443476	41	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000467709.6:ENST00000481728.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	5.93642	6.23369	6.53096	3.87502e-8	1.06284e-11	3.55241e-6	1.63406e-9
chr21	16306441	16306541	9787955	0	+	0.25	[0,0.32]	chr21	970598	144	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	6.00736	6.233515000000001	6.45967	2.47801e-8	2.0258e-11	2.36756e-6	2.97161e-9
chr8	125245367	125245467	5086540	0	+	0.22	[0,0.32]	chr8	455136	627	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	6.00736	6.233515000000001	6.45967	2.47801e-8	2.0258e-11	2.36756e-6	2.97161e-9
chr5	59092923	59093023	3473157	0	-	0.36	(0.32,0.36]	chr5	319179	14	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	170	2	5.95654	6.232835	6.50913	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	79783017	79783117	6181636	0	-	0.36	(0.32,0.36]	chr10	553558	163	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000610681.1:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	5.86583	6.2321349999999995	6.59844	6.04906e-8	2.46503e-12	5.40424e-6	4.05946e-10
chr18	22980443	22980541	9078175	0	+	0.510204	(0.49,0.526]	chr18	877072	22	INTRON	INTRON	RBBP8	ENSG00000101773.19	ENST00000582354.5:ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000399721.6:ENST00000360790.9:ENST00000577445.1:ENST00000585177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	5.37434	6.229465	7.08459	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	136172317	136172417	2444275	0	-	0.48	(0.459,0.49]	chr3	234696	192	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.85163	6.227535	6.60344	5.06515e-9	1e-12	5.39084e-7	1.72912e-10
chr1	217458824	217458924	857340	0	-	0.33	(0.32,0.36]	chr1	95378	91	INTRON	INTRON	GPATCH2	ENSG00000092978.11	ENST00000366935.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	5.1462	6.227505000000001	7.30881	2.68825e-9	1e-12	2.98355e-7	1.72912e-10
chr8	54005968	54006067	5170745	0	-	0.434343	(0.424,0.459]	chr8	463622	25	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	81	2	6.09212	6.226555	6.36099	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	176653507	176653606	3398921	0	+	0.525253	(0.49,0.526]	chr5	311873	7	EXON_MRNA	EXON_MRNA:INTRON	TSPAN17	ENSG00000048140.18	ENST00000310032.12:ENST00000298564.14:ENST00000508164.6:ENST00000514705.5:ENST00000503030.1:ENST00000504168.5:ENST00000503045.5:ENST00000515708.5:ENST00000507471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	5.63261	6.22506	6.81751	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	125339111	125339211	2419049	0	-	0.5	(0.49,0.526]	chr3	231878	2	SS3_PROX	SS3_PROX:INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	6.18717	6.224965	6.26276	1.66076e-11	6.58018e-12	2.50009e-9	1.03239e-9
chr11	20060711	20060810	6344853	0	+	0.464646	(0.459,0.49]	chr11	568983	37	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5:ENST00000525322.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	6.1465	6.224285	6.30207	6.25785e-11	6.43707e-12	8.69617e-9	1.01538e-9
chr22	19760252	19760328	9895654	0	+	0.328947	(0.32,0.36]	chr22	982179	2	INTRON	INTRON	TBX1	ENSG00000184058.15	ENST00000359500.7:ENST00000329705.11:ENST00000332710.8:ENST00000680333.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	5.01784	6.223105	7.42837	3.22675e-12	1e-12	5.24685e-10	1.72912e-10
chr2	204887959	204888059	1277957	0	+	0.52	(0.49,0.526]	chr2	132846	2013	INTRON	INTRON	PARD3B	ENSG00000116117.19	ENST00000406610.7:ENST00000415947.1:ENST00000349953.7:ENST00000351153.5:ENST00000358768.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	6.10587	6.2228200000000005	6.33977	6.5597e-11	1.64846e-12	9.0398e-9	2.75276e-10
chr6	149522760	149522859	4231445	0	-	0.494949	(0.49,0.526]	chr6	384371	12	INTRON	INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	6.1814	6.222765	6.26413	2.69895e-11	4.10783e-12	3.91566e-9	6.60034e-10
chr2	175149866	175149965	1623160	0	-	0.414141	(0.392,0.424]	chr2	167651	15	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	5.96662	6.2212700000000005	6.47592	6.28695e-9	3.31901e-12	6.5739e-7	5.37234e-10
chr6	105334204	105334304	4145996	0	-	0.42	(0.392,0.424]	chr6	377960	3	INTRON	INTRON	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.96662	6.2212700000000005	6.47592	6.28695e-9	3.31901e-12	6.5739e-7	5.37234e-10
chrX	24010185	24010284	10296509	0	-	0.40404	(0.392,0.424]	chrX	1024046	31	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	6.03434	6.221125000000001	6.40791	3.73254e-9	6.88871e-12	4.03186e-7	1.07164e-9
chr1	31922035	31922133	561162	0	-	0.367347	(0.36,0.392]	chr1	62907	20	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.94393	6.22004	6.49615	1.58245e-8	6.03728e-12	1.55285e-6	9.57482e-10
chr11	47493144	47493242	6604500	0	-	0.428571	(0.424,0.459]	chr11	601318	38	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000395292.6:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000535982.1:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	5	116	2	6.17481	6.21979	6.26477	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	127961123	127961223	5089627	0	+	0.47	(0.459,0.49]	chr8	455309	178	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	6.05475	6.219135	6.38352	2.70956e-10	1.10534e-12	3.40943e-8	1.89699e-10
chr3	48442961	48443057	1864636	0	+	0.583333	(0.57,0.629]	chr3	189001	20	INTRON	INTRON	TMA7	ENSG00000232112.3	ENST00000438607.2:ENST00000477624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	5.65304	6.218500000000001	6.78396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	131994077	131994173	7057488	0	+	0.625	(0.57,0.629]	chr12	647206	15	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000333577.8	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	5.60763	6.21849	6.82935	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	158405672	158405772	2056262	0	+	0.44	(0.424,0.459]	chr3	204903	504	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000684353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	5.90595	6.21397	6.52199	1.00338e-8	1e-12	1.01215e-6	1.73382e-10
chr4	141105926	141106026	3025017	0	-	0.45	(0.424,0.459]	chr4	282513	518	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	5.90595	6.21397	6.52199	1.00338e-8	1e-12	1.01215e-6	1.73382e-10
chr14	67953516	67953616	7669956	0	+	0.41	(0.392,0.424]	chr14	705758	443	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	71	2	5.79851	6.213125	6.62774	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	3419036	3419135	9267526	0	+	0.575758	(0.57,0.629]	chr19	893591	75	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000588839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	5.52307	6.210744999999999	6.89842	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	31914629	31914725	561086	0	-	0.375	(0.36,0.392]	chr1	62894	4	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6:ENST00000528253.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	5.56373	6.20945	6.85517	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	96865212	96865312	5950121	0	+	0.38	(0.36,0.392]	chr10	533659	64	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	5.64542	6.209429999999999	6.77344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	71388023	71388122	1070848	0	+	0.373737	(0.36,0.392]	chr2	113786	68	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	5.35009	6.20934	7.06859	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	43168329	43168429	3167606	0	+	0.41	(0.392,0.424]	chr5	292385	3	SS5_PROX	SS5_PROX:INTRON	ZNF131	ENSG00000172262.12	ENST00000682664.1:ENST00000510026.5:ENST00000509156.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000511736.5:ENST00000509931.5:ENST00000502623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	5.67247	6.20892	6.74537	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	47185197	47185290	7965785	0	+	0.548387	(0.526,0.57]	chr15	737283	4	INTRON	INTRON	SEMA6D	ENSG00000137872.17	ENST00000558014.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	6.15958	6.20805	6.25652	3.4729e-11	4.4752e-12	4.95584e-9	7.16361e-10
chr1	180193614	180193712	368383	0	+	0.602041	(0.57,0.629]	chr1	39940	27	INTRON	INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	6.14919	6.20637	6.26355	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	68470709	68470808	6428591	0	+	0.464646	(0.459,0.49]	chr11	579976	95	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	5.61516	6.204695	6.79423	9.49302e-8	1e-12	8.06088e-6	1.72912e-10
chr9	33835920	33836020	5369083	0	+	0.29	[0,0.32]	chr9	479420	176	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.84024	6.202825	6.56541	1.72569e-7	2.98916e-12	1.40017e-5	4.91016e-10
chr18	49305167	49305266	9226264	0	-	0.434343	(0.424,0.459]	chr18	888409	182	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	6.05853	6.202755	6.34698	7.70458e-10	1.28346e-11	9.22745e-8	1.9463e-9
chr2	202490630	202490730	1267486	0	+	0.44	(0.424,0.459]	chr2	132058	156	INTRON	INTRON	BMPR2	ENSG00000204217.16	ENST00000374580.10:ENST00000374574.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	6.05853	6.202755	6.34698	7.70458e-10	1.28346e-11	9.22745e-8	1.9463e-9
chr7	7187604	7187703	4303401	0	+	0.444444	(0.424,0.459]	chr7	390130	44	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	6.14325	6.2026699999999995	6.26209	3.56746e-10	3.1274e-11	4.46854e-8	4.50988e-9
chrX	132947208	132947308	10438384	0	-	0.3	[0,0.32]	chrX	1034989	1890	INTRON	INTRON	HS6ST2	ENSG00000171004.19	ENST00000370833.7:ENST00000370836.6:ENST00000640529.2:ENST00000406696.5:ENST00000521489.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	6.04894	6.2005	6.35206	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	36513648	36513747	4048919	0	-	0.454545	(0.424,0.459]	chr6	369077	57	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	5.52765	6.19993	6.87221	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	178611225	178611323	3676430	0	-	0.397959	(0.392,0.424]	chr5	334654	24	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	5.83142	6.199719999999999	6.56802	3.48252e-8	1e-12	3.23132e-6	1.72912e-10
chr15	93019120	93019218	8087700	0	+	0.367347	(0.36,0.392]	chr15	748162	39	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	5.78489	6.199035	6.61318	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	33009013	33009112	5604217	0	-	0.353535	(0.32,0.36]	chr9	501635	75	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	6.01536	6.1969449999999995	6.37853	9.59726e-9	1.01957e-10	9.74486e-7	1.36475e-8
chr17	47084648	47084748	8952239	0	-	0.33	(0.32,0.36]	chr17	861088	19	INTRON	INTRON	ENSG00000262879	ENSG00000262879.6	ENST00000668245.1:ENST00000573341.6:ENST00000572864.5:ENST00000576938.1:ENST00000574741.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	6.11896	6.196815000000001	6.27467	4.65151e-9	2.42526e-10	4.96782e-7	3.09612e-8
chr21	41877297	41877397	9883743	0	-	0.56	(0.526,0.57]	chr21	980322	53	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000269844.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	5.24106	6.19526	7.14946	1.34659e-12	1e-12	2.28243e-10	1.72912e-10
chr17	67171168	67171267	8995727	0	-	0.474747	(0.459,0.49]	chr17	866890	30	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5:ENST00000417253.7:ENST00000578783.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	49	2	5.66413	6.194395	6.72466	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	48654440	48654518	7157832	0	-	0.538462	(0.526,0.57]	chr12	657586	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549463.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	394	2	6.16605	6.19205	6.21805	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	29374946	29375044	7128988	0	-	0.438776	(0.424,0.459]	chr12	654731	16	INTRON	INTRON	ERGIC2	ENSG00000087502.19	ENST00000360150.9:ENST00000552155.5:ENST00000546839.5:ENST00000550353.5:ENST00000552132.5:ENST00000548441.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.94485	6.191915	6.43898	3.84993e-9	2.53975e-12	4.17496e-7	4.16121e-10
chr5	70926979	70927078	3207207	0	+	0.454545	(0.424,0.459]	chr5	295875	14	INTRON	INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	6.02948	6.191750000000001	6.35402	1.8912e-9	6.61571e-12	2.1436e-7	1.03402e-9
chrX	17402519	17402619	10091329	0	+	0.31	[0,0.32]	chrX	1006577	258	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	6.08606	6.189425	6.29279	5.85315e-9	5.12663e-10	6.18098e-7	6.28454e-8
chr12	19504812	19504912	6839876	0	+	0.27	[0,0.32]	chr12	625002	42	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1:ENST00000512223.6:ENST00000398731.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	6.15712	6.18938	6.22164	3.56277e-9	8.84932e-10	3.88104e-7	1.05098e-7
chr3	129261107	129261207	1988802	0	+	0.49	(0.459,0.49]	chr3	200093	3	SS5_PROX	SS5_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	5.63923	6.186310000000001	6.73339	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	64518553	64518653	8005117	0	+	0.37	(0.36,0.392]	chr15	740244	156	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	103	2	5.76954	6.18276	6.59598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	66385620	66385719	8220720	0	-	0.494949	(0.49,0.526]	chr15	762788	53	INTRON	INTRON	TIPIN	ENSG00000075131.10	ENST00000562124.5:ENST00000568216.5:ENST00000570251.1:ENST00000561773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	6.09518	6.179655	6.26413	1.11716e-10	4.10783e-12	1.47877e-8	6.60034e-10
chr3	136690538	136690638	2448119	0	-	0.35	(0.32,0.36]	chr3	234921	592	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	5.86583	6.17925	6.49267	6.04906e-8	1.53492e-11	5.40424e-6	2.28984e-9
chr5	140256139	140256238	3622085	0	-	0.535354	(0.526,0.57]	chr5	328838	97	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	79	2	5.03764	6.17911	7.32058	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	129537961	129538061	6021309	0	+	0.47	(0.459,0.49]	chr10	540403	9	INTRON	INTRON	MGMT	ENSG00000170430.10	ENST00000306010.8:ENST00000482653.1:ENST00000651593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	6.05475	6.1784099999999995	6.30207	2.70956e-10	6.43707e-12	3.40943e-8	1.01538e-9
chr3	177177701	177177801	2499807	0	-	0.38	(0.36,0.392]	chr3	239263	64	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	6.0793	6.17786	6.27642	2.64141e-9	2.38946e-10	2.93923e-7	3.06702e-8
chr7	35847325	35847414	4365591	0	+	0.606742	(0.57,0.629]	chr7	393746	3	SS5_PROX	SS5_PROX:INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000473201.2:ENST00000399035.7:ENST00000425198.1:ENST00000634700.1:ENST00000635420.1:ENST00000634591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	5.99652	6.177195	6.35787	2.40464e-10	1e-12	3.08159e-8	1.73382e-10
chr17	39539690	39539789	8711403	0	+	0.292929	[0,0.32]	chr17	825693	53	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000559663.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	21	2	6.00736	6.176455000000001	6.34555	2.47801e-8	1.33932e-10	2.36756e-6	1.78706e-8
chr2	238358379	238358478	1358589	0	+	0.545455	(0.526,0.57]	chr2	140176	19	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	6.09607	6.176295	6.25652	4.4752e-12	1e-12	7.16361e-10	1.72912e-10
chr1	155474787	155474887	776564	0	-	0.38	(0.36,0.392]	chr1	85727	118	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	5.40625	6.174189999999999	6.94213	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	59027814	59027914	8971915	0	-	0.43	(0.424,0.459]	chr17	863991	100	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	5.90595	6.1732	6.44045	1.00338e-8	1.52944e-12	1.01215e-6	2.57541e-10
chr14	67953716	67953816	7669958	0	+	0.37	(0.36,0.392]	chr14	705758	445	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	5.30494	6.173125000000001	7.04131	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	108691060	108691159	10200514	0	+	0.393939	(0.392,0.424]	chrX	1015958	30	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000510690.2:ENST00000515658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.96662	6.172079999999999	6.37754	6.28695e-9	1.91154e-11	6.5739e-7	2.81903e-9
chr7	70497929	70498029	4415707	0	+	0.41	(0.392,0.424]	chr7	397021	602	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	6.03434	6.171965	6.30959	3.73254e-9	3.72697e-11	4.03186e-7	5.32557e-9
chr6	89745341	89745411	4128958	0	-	0.457143	(0.424,0.459]	chr6	376479	2	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	5.60095	6.171545	6.74214	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	64823010	64823110	8214557	0	-	0.51	(0.49,0.526]	chr15	761802	4	SS3_PROX	SS3_PROX:INTRON	PIF1	ENSG00000140451.13	ENST00000268043.8:ENST00000333425.10:ENST00000559239.2:ENST00000560444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	6.00347	6.17033	6.33719	4.64321e-10	1e-12	5.72685e-8	1.73382e-10
chr12	122763821	122763919	7040084	0	+	0.357143	(0.32,0.36]	chr12	645544	5	INTRON	INTRON	DENR	ENSG00000139726.11	ENST00000280557.11:ENST00000455982.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	5.46439	6.170154999999999	6.87592	1.3437e-11	1e-12	2.04865e-9	1.72912e-10
chr7	74876393	74876493	4732420	0	-	0.47	(0.459,0.49]	chr7	424649	76	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	32	2	5.95676	6.17014	6.38352	1.17119e-9	1.10534e-12	1.35849e-7	1.89699e-10
chr16	67499261	67499361	8409416	0	+	0.57	(0.526,0.57]	chr16	787368	68	INTRON	INTRON	ATP6V0D1-DT	ENSG00000270049.4	ENST00000656196.1:ENST00000659360.1:ENST00000635000.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	6.09827	6.169595	6.24092	7.17844e-11	8.32645e-12	9.84697e-9	1.29188e-9
chr1	116392453	116392553	269284	0	+	0.41	(0.392,0.424]	chr1	27728	2	SS3_PROX	SS3_PROX:INTRON	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.68223	6.168405	6.65458	1.931e-7	1e-12	1.56398e-5	1.72912e-10
chr7	55068838	55068938	4390377	0	+	0.54	(0.526,0.57]	chr7	395429	249	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	5.68416	6.16767	6.65118	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	26426532	26426631	2590841	0	+	0.363636	(0.36,0.392]	chr4	248628	14	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000680204.1:ENST00000515023.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	5.94393	6.167199999999999	6.39047	1.58245e-8	3.80762e-11	1.55285e-6	5.38572e-9
chr2	148074961	148075061	1164710	0	+	0.38	(0.36,0.392]	chr2	123785	30	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	6.01711	6.167065	6.31702	9.48035e-9	7.38095e-11	9.6816e-7	1.00784e-8
chr1	182841002	182841097	372774	0	+	0.631579	(0.629,1]	chr1	40291	7	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.94162	6.1668400000000005	6.39206	2.38878e-10	1e-12	3.06926e-8	1.72912e-10
chr14	69752140	69752240	7681359	0	+	0.53	(0.526,0.57]	chr14	706152	246	INTRON	INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	6.01213	6.165025	6.31792	2.82174e-10	2.00417e-12	3.5327e-8	3.33638e-10
chr12	123339388	123339488	7313433	0	-	0.49	(0.459,0.49]	chr12	675638	25	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	5.26449	6.164745	7.065	2.71516e-12	1e-12	4.4884e-10	1.72912e-10
chr7	69810478	69810578	4408817	0	+	0.4	(0.392,0.424]	chr7	396954	1469	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	5.58314	6.164255000000001	6.74537	7.33041e-7	1e-12	5.19799e-5	1.73382e-10
chr19	3460863	3460962	9267958	0	+	0.515152	(0.49,0.526]	chr19	893645	30	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	5.78336	6.159924999999999	6.53649	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	34952937	34953035	3146057	0	+	0.438776	(0.424,0.459]	chr5	290587	3	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	5.18671	6.15986	7.13301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	62711594	62711694	1048646	0	+	0.43	(0.424,0.459]	chr2	111806	39	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	111	2	5.95406	6.159535	6.36501	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	1691069	1691130	6794584	0	+	0.786885	(0.629,1]	chr12	620325	1	UTR5	UTR5:EXON_MRNA:INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.93293	6.15787	6.38281	2.80251e-10	1e-12	3.54906e-8	1.73382e-10
chr5	137450903	137451003	3608735	0	-	0.54	(0.526,0.57]	chr5	327611	856	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	4.95729	6.156635	7.35598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	14734204	14734303	3423052	0	-	0.474747	(0.459,0.49]	chr5	314873	170	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	5.77423	6.154095	6.53396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	3791117	3791217	6542098	0	-	0.56	(0.526,0.57]	chr11	594484	86	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	5.71772	6.154065	6.59041	1.72001e-8	1e-12	1.66972e-6	1.72912e-10
chr3	48442864	48442961	1864635	0	+	0.402062	(0.392,0.424]	chr3	189001	19	INTRON	INTRON	TMA7	ENSG00000232112.3	ENST00000438607.2:ENST00000477624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.83142	6.15367	6.47592	3.48252e-8	3.31901e-12	3.23132e-6	5.37234e-10
chr8	80053730	80053830	5200435	0	-	0.43	(0.424,0.459]	chr8	465824	3	SS3_PROX	SS3_PROX:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523319.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000518500.1:ENST00000520795.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	6.05853	6.15362	6.24871	7.70458e-10	6.7358e-11	9.22745e-8	9.26681e-9
chr10	87516979	87517078	5926003	0	+	0.444444	(0.424,0.459]	chr10	531177	34	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	6.14325	6.153575	6.1639	3.56746e-10	1.54441e-10	4.46854e-8	2.03038e-8
chr20	41175201	41175300	9653439	0	+	0.545455	(0.526,0.57]	chr20	953504	8	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLCG1	ENSG00000124181.15	ENST00000244007.7:ENST00000373271.5:ENST00000685551.1:ENST00000612731.2:ENST00000599785.5:ENST00000608689.5:ENST00000608885.5:ENST00000609821.5:ENST00000609257.5:ENST00000607954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	5.65874	6.153325000000001	6.64791	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	64519053	64519153	8005122	0	+	0.58	(0.57,0.629]	chr15	740244	161	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	6.00911	6.153085	6.29706	1.55782e-10	1.45328e-12	2.04475e-8	2.44971e-10
chr2	39066532	39066631	1424075	0	-	0.373737	(0.36,0.392]	chr2	148239	74	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	4.86904	6.152505	7.43597	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	21092710	21092810	3731379	0	+	0.28	[0,0.32]	chr6	338647	271	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.76944	6.1502	6.53096	2.56854e-7	1.06284e-11	2.02856e-5	1.63406e-9
chr2	55227831	55227931	1450637	0	-	0.43	(0.424,0.459]	chr2	150399	4	SS5_PROX	SS5_PROX:INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000487320.5:ENST00000466020.1:ENST00000451916.1:ENST00000464243.1:ENST00000463300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	5.5376	6.14759	6.75758	4.83052e-7	1e-12	3.58077e-5	1.72912e-10
chr14	37315814	37315914	7604598	0	+	0.48	(0.459,0.49]	chr14	699705	69	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000694965.1:ENST00000553349.1:ENST00000695406.1:ENST00000695407.1:ENST00000556940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	6.06164	6.147205	6.23277	1.44494e-11	1e-12	2.19068e-9	1.72912e-10
chr2	61505974	61506073	1459524	0	-	0.434343	(0.424,0.459]	chr2	151763	33	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	5.94485	6.1459150000000005	6.34698	3.84993e-9	1.28346e-11	4.17496e-7	1.9463e-9
chr9	17648319	17648419	5345784	0	+	0.39	(0.36,0.392]	chr9	477852	180	INTRON	INTRON	SH3GL2	ENSG00000107295.10	ENST00000380607.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.86758	6.145110000000001	6.42264	5.98276e-8	1.2419e-11	5.2159e-6	1.89925e-9
chr17	45045964	45046064	8944432	0	-	0.49	(0.459,0.49]	chr17	860299	9	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000452796.7:ENST00000651974.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000686754.1:ENST00000687463.1:ENST00000685712.1:ENST00000592902.6:ENST00000685986.1:ENST00000692907.1:ENST00000689764.1:ENST00000687414.1:ENST00000693328.1:ENST00000688568.1:ENST00000588295.2:ENST00000593094.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	5.61516	6.14252	6.66988	9.49302e-8	1e-12	8.06088e-6	1.72912e-10
chr17	82260928	82261027	9034212	0	-	0.565657	(0.526,0.57]	chr17	873278	50	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	5.82267	6.141629999999999	6.46059	4.36723e-9	1e-12	4.70004e-7	1.72912e-10
chr13	21589696	21589795	7464317	0	-	0.474747	(0.459,0.49]	chr13	687617	64	INTRON	INTRON	MICU2	ENSG00000165487.14	ENST00000382374.9:ENST00000469058.1:ENST00000476895.5:ENST00000468222.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	6.05475	6.13525	6.21575	2.70956e-10	2.91337e-11	3.40943e-8	4.19646e-9
chr1	145785193	145785290	748504	0	-	0.329897	(0.32,0.36]	chr1	80181	2	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	6.01536	6.134965	6.25457	9.59726e-9	6.8782e-10	9.74486e-7	8.23717e-8
chr3	51439581	51439680	2280853	0	-	0.343434	(0.32,0.36]	chr3	222357	60	INTRON	INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	6.01536	6.134965	6.25457	9.59726e-9	6.8782e-10	9.74486e-7	8.23717e-8
chr12	89654879	89654979	7231634	0	-	0.35	(0.32,0.36]	chr12	666818	122	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6:ENST00000549585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	6.11896	6.134895	6.15083	4.65151e-9	1.52443e-9	4.96782e-7	1.74447e-7
chr5	112878016	112878112	3569058	0	-	0.34375	(0.32,0.36]	chr5	324430	18	UTR3	UTR3:EXON_MRNA	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	6.11896	6.134895	6.15083	4.65151e-9	1.52443e-9	4.96782e-7	1.74447e-7
chr1	183473155	183473220	375177	0	+	0.430769	(0.424,0.459]	chr1	40726	2	SS5_PROX	SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	5.45551	6.132075	6.80864	1.50668e-6	1e-12	9.96778e-5	1.73382e-10
chr1	70230370	70230463	195813	0	+	0.344086	(0.32,0.36]	chr1	21030	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5:ENST00000463116.1:ENST00000484162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	5.6709	6.131885	6.59287	1.02884e-12	1.01197e-12	1.77613e-10	1.74544e-10
chr1	103530240	103530340	248207	0	+	0.33	(0.32,0.36]	chr1	25047	21	INTRON	INTRON	RNPC3	ENSG00000185946.16	ENST00000524631.5:ENST00000531883.5:ENST00000423855.7:ENST00000533099.5:ENST00000527062.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	6.01217	6.13184	6.25151	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	4257508	4257608	8850936	0	-	0.43	(0.424,0.459]	chr17	845699	147	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	5.82357	6.1312750000000005	6.43898	2.53975e-12	1e-12	4.16121e-10	1.73382e-10
chr1	233619405	233619504	460180	0	+	0.393939	(0.392,0.424]	chr1	49615	45	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	5.67247	6.12948	6.58649	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	48373063	48373163	8552150	0	-	0.39	(0.36,0.392]	chr16	805166	73	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	89	2	5.77552	6.1294249999999995	6.48333	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	132516345	132516445	7059286	0	+	0.49	(0.459,0.49]	chr12	647581	45	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	5.95676	6.129415	6.30207	1.17119e-9	6.43707e-12	1.35849e-7	1.01538e-9
chr22	28495866	28495966	10006262	0	-	0.47	(0.459,0.49]	chr22	996542	529	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	5.95676	6.129415	6.30207	1.17119e-9	6.43707e-12	1.35849e-7	1.01538e-9
chr12	20370943	20371043	6842073	0	+	0.28	[0,0.32]	chr12	625044	3	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	5.41088	6.126855	6.84283	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	16257962	16258062	8659813	0	+	0.56	(0.526,0.57]	chr17	818847	235	INTRON	INTRON	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	6.01213	6.126525	6.24092	2.82174e-10	8.32645e-12	3.5327e-8	1.29188e-9
chr11	9306960	9307060	6557096	0	-	0.36	(0.32,0.36]	chr11	596244	69	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	5.7576	6.1259999999999994	6.4944	6.14897e-12	1e-12	9.707400000000001e-10	1.72912e-10
chr22	41123478	41123577	9951315	0	+	0.414141	(0.392,0.424]	chr22	989843	53	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.68223	6.125125	6.56802	1.931e-7	1e-12	1.56398e-5	1.72912e-10
chr14	32081274	32081374	7584284	0	+	0.36	(0.32,0.36]	chr14	698920	26	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000555814.1:ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000556191.5	protein_coding	protein_coding	protein_coding	protein_coding	11	113	2	5.17753	6.124245	7.07096	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	125148441	125148541	6285439	0	-	0.36	(0.32,0.36]	chr10	562410	103	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.86583	6.12218	6.37853	6.04906e-8	1.01957e-10	5.40424e-6	1.36475e-8
chr11	74157026	74157126	6648624	0	-	0.34	(0.32,0.36]	chr11	609451	168	INTRON	INTRON	C2CD3	ENSG00000168014.18	ENST00000334126.12:ENST00000442398.7:ENST00000680231.1:ENST00000680839.1:ENST00000681609.1:ENST00000681291.1:ENST00000681924.1:ENST00000680665.1:ENST00000681385.1:ENST00000681811.1:ENST00000681143.1:ENST00000679415.1:ENST00000679906.1:ENST00000681829.1:ENST00000681310.1:ENST00000313663.11:ENST00000414160.7:ENST00000538361.2:ENST00000680306.1:ENST00000681000.1:ENST00000415191.6:ENST00000680718.1:ENST00000539061.6:ENST00000680645.1:ENST00000680173.1:ENST00000681345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	5.86583	6.12218	6.37853	6.04906e-8	1.01957e-10	5.40424e-6	1.36475e-8
chr17	40155668	40155767	8713785	0	+	0.353535	(0.32,0.36]	chr17	826354	137	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	5.86583	6.12218	6.37853	6.04906e-8	1.01957e-10	5.40424e-6	1.36475e-8
chr17	51036173	51036272	8964893	0	-	0.424242	(0.392,0.424]	chr17	862922	41	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	5.10594	6.122005	7.13807	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	167023035	167023135	3976015	0	+	0.58	(0.57,0.629]	chr6	360577	4	SS5_PROX	SS5_PROX:INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000496181.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	6.08593	6.120265	6.1546	4.46939e-11	1.78502e-11	6.29296e-9	2.64822e-9
chr1	46110047	46110147	601863	0	-	0.4	(0.392,0.424]	chr1	67526	289	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.96662	6.1192899999999995	6.27196	6.28695e-9	1.10884e-10	6.5739e-7	1.47443e-8
chr12	62548269	62548369	6931531	0	+	0.41	(0.392,0.424]	chr12	634453	8	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.96662	6.1192899999999995	6.27196	6.28695e-9	1.10884e-10	6.5739e-7	1.47443e-8
chr3	161230816	161230915	2073936	0	+	0.424242	(0.392,0.424]	chr3	205599	31	INTRON	INTRON	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	5.96662	6.1192899999999995	6.27196	6.28695e-9	1.10884e-10	6.5739e-7	1.47443e-8
chr11	47759025	47759124	6606088	0	-	0.515152	(0.49,0.526]	chr11	601561	40	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000540172.2:ENST00000542975.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	5.8303	6.118515	6.40673	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	68317068	68317167	8414847	0	+	0.525253	(0.49,0.526]	chr16	788198	6	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	5.57865	6.117095	6.65554	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	79856123	79856223	7218823	0	-	0.39	(0.36,0.392]	chr12	665880	68	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	6.0793	6.11594	6.15258	2.64141e-9	1.50388e-9	2.93923e-7	1.73555e-7
chr3	158156589	158156689	2053760	0	+	0.37	(0.36,0.392]	chr3	204858	198	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	6.0793	6.11594	6.15258	2.64141e-9	1.50388e-9	2.93923e-7	1.73555e-7
chr9	34043451	34043550	5607374	0	-	0.383838	(0.36,0.392]	chr9	502191	102	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	6.0793	6.11594	6.15258	2.64141e-9	1.50388e-9	2.93923e-7	1.73555e-7
chrX	73948073	73948173	10163863	0	+	0.27	[0,0.32]	chrX	1012978	3	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	5.93642	6.114605	6.29279	3.87502e-8	5.12663e-10	3.55241e-6	6.28454e-8
chrX	24154926	24155026	10104430	0	+	0.48	(0.459,0.49]	chrX	1007434	17	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	5.89095	6.11423	6.33751	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	169545870	169545970	2488166	0	-	0.33	(0.32,0.36]	chr3	238376	619	INTRON	INTRON	MECOM	ENSG00000085276.19	ENST00000651503.2:ENST00000494292.6:ENST00000485957.1:ENST00000486748.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	5.83938	6.114045	6.38871	3.86634e-11	1e-12	5.49052e-9	1.72912e-10
chr7	70141328	70141427	4412134	0	+	0.373737	(0.36,0.392]	chr7	396995	64	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000476695.2:ENST00000643587.1:ENST00000659051.1:ENST00000643060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	5.80422	6.11343	6.42264	1.2419e-11	1e-12	1.89925e-9	1.72912e-10
chr14	49862749	49862849	7818597	0	-	0.68	(0.629,1]	chr14	719843	3	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000282885:RN7SL2	ENSG00000282885.2:ENSG00000274012.1	ENST00000635177.1:ENST00000668702.1:ENST00000659240.1:ENST00000655317.1:ENST00000634923.1:ENST00000490232.3	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	39	1539	2	6.02118	6.11123	6.20128	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	8798137	8798237	6552544	0	-	0.43	(0.424,0.459]	chr11	595762	34	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530438.5:ENST00000528527.5:ENST00000533425.5:ENST00000526057.5:ENST00000527510.5:ENST00000532651.5:ENST00000533225.5:ENST00000526126.5:ENST00000529940.5:ENST00000528523.5:ENST00000534783.1:ENST00000526241.5:ENST00000530959.5:ENST00000526155.5:ENST00000534248.5:ENST00000527347.5:ENST00000527516.5:ENST00000527473.5:ENST00000533471.5:ENST00000530938.5:ENST00000524757.5:ENST00000527392.5:ENST00000526828.5:ENST00000525169.5:ENST00000534665.5:ENST00000531578.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	5.5376	6.11094	6.68428	4.83052e-7	1e-12	3.58077e-5	1.72912e-10
chr4	182515056	182515156	2799231	0	+	0.38	(0.36,0.392]	chr4	264820	656	INTRON	INTRON	TENM3	ENSG00000218336.9	ENST00000511685.6:ENST00000510504.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.70074	6.1109	6.52106	3.77982e-7	2.09599e-12	2.84782e-5	3.49782e-10
chr10	282107	282202	6032169	0	-	0.452632	(0.424,0.459]	chr10	541484	4	INTRON	INTRON	DIP2C	ENSG00000151240.17	ENST00000381496.7:ENST00000280886.12:ENST00000634311.1	protein_coding	protein_coding	protein_coding	protein_coding	9	167	2	5.7168	6.110355	6.50391	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	79921471	79921570	8256838	0	-	0.464646	(0.459,0.49]	chr15	766428	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	ST20:ENSG00000278600	ENSG00000180953.11:ENSG00000278600.1	ENST00000485386.1:ENST00000618835.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	32	2	5.68398	6.10897	6.53396	5.57196e-8	1e-12	4.89622e-6	1.73382e-10
chr1	61939193	61939293	170755	0	+	0.26	[0,0.32]	chr1	19478	110	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5:ENST00000494842.2:ENST00000490547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	5.58056	6.10866	6.63676	1.7046e-6	1.39611e-12	1.13343e-4	2.35903e-10
chr9	70222271	70222370	5396165	0	+	0.313131	[0,0.32]	chr9	481910	33	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.58056	6.10866	6.63676	1.7046e-6	1.39611e-12	1.13343e-4	2.35903e-10
chr16	72769945	72770045	8431532	0	+	0.32	[0,0.32]	chr16	790235	224	INTRON	INTRON	ENSG00000259768	ENSG00000259768.7	ENST00000668995.1:ENST00000689200.1:ENST00000687589.1:ENST00000692742.1:ENST00000692937.1:ENST00000653037.1:ENST00000686426.1:ENST00000563328.4	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	5.65119	6.1083	6.56541	1.20332e-6	2.98916e-12	8.2089e-5	4.91016e-10
chr3	150430408	150430508	2041958	0	+	0.42	(0.392,0.424]	chr3	204139	69	INTRON	INTRON	TSC22D2	ENSG00000196428.13	ENST00000361875.8:ENST00000688009.1:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.89904	6.104315	6.30959	2.16736e-8	3.72697e-11	2.09062e-6	5.32557e-9
chr16	4109751	4109851	8500611	0	-	0.45	(0.424,0.459]	chr16	796874	557	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	6.03045	6.10384	6.17723	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	186787611	186787680	2129335	0	+	0.42029	(0.392,0.424]	chr3	209438	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2:SNORA4	ENSG00000156976.17:ENSG00000263776.1	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000497177.1:ENST00000494445.1:ENST00000461021.1:ENST00000584302.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay	40	594	2	5.83489	6.10326	6.37163	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	97188258	97188358	10179038	0	+	0.37	(0.36,0.392]	chrX	1013797	461	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	5.79611	6.103154999999999	6.4102	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	44349073	44349172	1854434	0	+	0.525253	(0.49,0.526]	chr3	187600	78	INTRON	INTRON	TCAIM	ENSG00000179152.20	ENST00000417237.5:ENST00000383746.7:ENST00000494638.5:ENST00000396078.7:ENST00000462230.5:ENST00000412611.6:ENST00000444602.2:ENST00000342649.9:ENST00000431657.5:ENST00000417768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	97	2	5.83842	6.102645	6.36687	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	112637963	112638063	260692	0	+	0.38	(0.36,0.392]	chr1	26883	177	INTRON	INTRON	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	5.64515	6.100960000000001	6.55677	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	172650819	172650919	3391418	0	+	0.5	(0.49,0.526]	chr5	311146	90	INTRON	INTRON	NEURL1B	ENSG00000214357.9	ENST00000369800.6:ENST00000520919.5:ENST00000522853.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	6.09518	6.100525	6.10587	1.11716e-10	6.5597e-11	1.47877e-8	9.0398e-9
chr20	34435881	34435981	9632982	0	+	0.34	(0.32,0.36]	chr20	950773	110	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	4.88536	6.097085	7.30881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	60774934	60775034	7640027	0	+	0.44	(0.424,0.459]	chr14	703330	211	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	5.67071	6.096349999999999	6.52199	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	101509498	101509597	2375853	0	-	0.353535	(0.32,0.36]	chr3	228448	80	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.69899	6.09583	6.49267	3.81705e-7	1.53492e-11	2.90385e-5	2.28984e-9
chr11	68057422	68057521	6631248	0	-	0.515152	(0.49,0.526]	chr11	607424	30	INTRON	INTRON	CHKA	ENSG00000110721.12	ENST00000265689.9:ENST00000533728.1:ENST00000525155.5:ENST00000356135.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	5.92809	6.0954250000000005	6.26276	1.02462e-9	6.58018e-12	1.20726e-7	1.03239e-9
chr6	1852736	1852836	3987092	0	-	0.58	(0.57,0.629]	chr6	361408	1098	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	5.65304	6.09288	6.53272	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	169664031	169664131	2789868	0	+	0.38	(0.36,0.392]	chr4	264232	32	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.79453	6.092499999999999	6.39047	9.49031e-8	3.80762e-11	8.06088e-6	5.38572e-9
chr7	93327726	93327825	4473790	0	+	0.30303	[0,0.32]	chr7	401882	36	INTRON	INTRON	VPS50	ENSG00000004766.17	ENST00000544910.5:ENST00000305866.10:ENST00000441602.5:ENST00000649152.1:ENST00000471188.5:ENST00000467326.5:ENST00000480943.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	5.54249	6.089625	6.63676	6.33171e-12	1.39611e-12	9.964250000000001e-10	2.35903e-10
chr7	55887780	55887880	4392545	0	+	0.98	(0.629,1]	chr7	395676	1	SS5_PROX	SS5_PROX:INTRON	ZNF713	ENSG00000178665.16	ENST00000429591.4:ENST00000466630.5:ENST00000411863.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	5.99897	6.088995000000001	6.17902	9.87725e-11	4.2899e-12	1.32987e-8	6.88918e-10
chr11	48078393	48078493	6395973	0	+	0.53	(0.526,0.57]	chr11	573271	317	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	5.70894	6.0871949999999995	6.46545	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	95433758	95433858	4778866	0	-	0.54	(0.526,0.57]	chr7	427973	1	SS5_PROX	SS5_PROX:INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5:ENST00000471883.1:ENST00000469716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	6.01213	6.0858550000000005	6.15958	2.82174e-10	3.4729e-11	3.5327e-8	4.95584e-9
chr1	204314694	204314794	841563	0	-	0.52	(0.49,0.526]	chr1	93560	74	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000414478.1:ENST00000564627.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	5.83024	6.085005	6.33977	4.05406e-9	1.64846e-12	4.37881e-7	2.75276e-10
chr9	133937412	133937511	5762510	0	-	0.50505	(0.49,0.526]	chr9	517661	92	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	5.63261	6.08455	6.53649	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	10363842	10363941	3119958	0	+	0.333333	(0.32,0.36]	chr5	288981	88	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	5.7576	6.0829249999999995	6.40825	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	12201203	12201303	7088934	0	-	0.4	(0.392,0.424]	chr12	651992	137	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1:ENST00000545658.1:ENST00000535731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	5.59633	6.0821749999999994	6.56802	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	49796872	49796972	7817982	0	-	0.37	(0.36,0.392]	chr14	719689	1	SS5_PROX	SS5_PROX:INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556691.5:ENST00000556074.5:ENST00000556925.5:ENST00000555970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	5.47714	6.08197	6.6868	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr5	139583481	139583581	3334316	0	+	0.58	(0.57,0.629]	chr5	306100	207	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	6.00911	6.081855	6.1546	1.55782e-10	1.78502e-11	2.04475e-8	2.64822e-9
chr12	53393905	53394004	6914552	0	+	0.555556	(0.526,0.57]	chr12	630971	99	INTRON	INTRON	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	5.9817	6.080635	6.17957	5.835e-10	1.82673e-11	7.10688e-8	2.71431e-9
chr10	63485263	63485362	6149117	0	-	0.414141	(0.392,0.424]	chr10	550104	194	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	24	2	5.74972	6.0788150000000005	6.40791	1.25981e-7	6.88871e-12	1.05791e-5	1.07164e-9
chr1	61939293	61939393	170756	0	+	0.37	(0.36,0.392]	chr1	19478	111	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5:ENST00000494842.2:ENST00000490547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	5.36786	6.0746649999999995	6.78147	7.7117e-11	1e-12	1.05061e-8	1.73382e-10
chr12	122895551	122895651	7309343	0	-	0.51	(0.49,0.526]	chr12	675026	2	SS5_PROX	SS5_PROX:INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	5.74425	6.070165	6.39608	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	29639498	29639598	1813755	0	+	0.31	[0,0.32]	chr3	183991	519	INTRON	INTRON	RBMS3	ENSG00000144642.22	ENST00000636680.2:ENST00000637842.1:ENST00000434693.6:ENST00000383767.7:ENST00000445033.5:ENST00000383766.6:ENST00000273139.13:ENST00000452462.5:ENST00000456853.1:ENST00000497205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	5.22411	6.06921	6.91431	1.49849e-9	1e-12	1.73006e-7	1.72912e-10
chrX	73841534	73841634	10373628	0	-	0.41	(0.392,0.424]	chrX	1029968	42	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	2	43	2	5.11675	6.067705	7.01866	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	31498498	31498597	6587367	0	-	0.323232	(0.32,0.36]	chr11	599106	99	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	6.01536	6.06716	6.11896	9.59726e-9	4.65151e-9	9.74486e-7	4.96782e-7
chrX	123965999	123966099	10217658	0	+	0.34	(0.32,0.36]	chrX	1017535	22	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	6.01536	6.06716	6.11896	9.59726e-9	4.65151e-9	9.74486e-7	4.96782e-7
chr1	7463530	7463630	18691	0	+	0.47	(0.459,0.49]	chr1	1905	2136	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	5.66413	6.06424	6.46435	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	97273462	97273562	4136113	0	-	0.37	(0.36,0.392]	chr6	376986	4	SS3_PROX	SS3_PROX:INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	5.43936	6.063079999999999	6.6868	3.42448e-6	1e-12	2.10826e-4	1.72912e-10
chr4	183929315	183929415	2806421	0	+	0.43	(0.424,0.459]	chr4	265327	220	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1:ENST00000308497.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	5.6865	6.06274	6.43898	9.64047e-8	2.53975e-12	8.13052e-6	4.16121e-10
chr22	28356221	28356321	10004865	0	-	0.42	(0.392,0.424]	chr22	996538	492	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	6.03434	6.062285	6.09023	3.73254e-9	1.13607e-9	4.03186e-7	1.32549e-7
chr14	102667798	102667898	7760494	0	+	0.39	(0.36,0.392]	chr14	712565	741	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.62785	6.061999999999999	6.49615	5.69775e-7	6.03728e-12	4.16055e-5	9.57482e-10
chr9	92524157	92524257	5426562	0	+	0.38	(0.36,0.392]	chr9	484428	1439	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.62785	6.061999999999999	6.49615	5.69775e-7	6.03728e-12	4.16055e-5	9.57482e-10
chr17	50727763	50727863	8741733	0	+	0.45	(0.424,0.459]	chr17	832105	34	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	5.86176	6.0619250000000005	6.26209	3.1274e-11	1e-12	4.50988e-9	1.72912e-10
chr12	39425034	39425134	7142418	0	-	0.44	(0.424,0.459]	chr12	655948	544	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	5.2969	6.061415	6.82593	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	8450785	8450885	508106	0	-	0.48	(0.459,0.49]	chr1	54851	121	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.80717	6.060665	6.31416	1.22616e-8	3.08209e-12	1.22232e-6	5.03634e-10
chr17	38900493	38900592	8710240	0	+	0.494949	(0.49,0.526]	chr17	825549	14	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	5.20405	6.0601199999999995	6.91619	6.39899e-12	1e-12	1.01335e-9	1.73382e-10
chr21	37157214	37157314	9812236	0	+	0.34	(0.32,0.36]	chr21	972758	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000487711.5:ENST00000472398.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.96926	6.060045000000001	6.15083	3.15048e-8	1.52443e-9	2.93512e-6	1.74447e-7
chr8	109609071	109609171	5249541	0	-	0.46	(0.459,0.49]	chr8	469420	11	INTRON	INTRON	SYBU	ENSG00000147642.17	ENST00000533895.5:ENST00000276646.14:ENST00000532779.5:ENST00000424158.6:ENST00000446070.6:ENST00000528331.5:ENST00000399066.7:ENST00000528647.5:ENST00000422135.5:ENST00000408889.7:ENST00000408908.6:ENST00000433638.1:ENST00000440310.5:ENST00000533065.5:ENST00000533171.5:ENST00000528045.5:ENST00000527664.1:ENST00000529190.5:ENST00000532189.5:ENST00000528569.5:ENST00000533821.5:ENST00000530841.5:ENST00000531230.5:ENST00000534501.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	5.58315	6.05847	6.53379	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	213179188	213179287	428716	0	+	0.494949	(0.49,0.526]	chr1	46186	23	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	6.01971	6.0574449999999995	6.09518	2.59274e-10	1.11716e-10	3.28602e-8	1.47877e-8
chr2	112211923	112212022	1548892	0	-	0.323232	(0.32,0.36]	chr2	160508	5	UTR3	UTR3:EXON_MRNA	ZC3H8	ENSG00000144161.14	ENST00000409573.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	5.26021	6.0568100000000005	6.85341	1.14222e-9	1e-12	1.33948e-7	1.73382e-10
chr2	189850459	189850559	1238420	0	+	0.39	(0.36,0.392]	chr2	130028	60	INTRON	INTRON	PMS1	ENSG00000064933.19	ENST00000624204.3:ENST00000432292.7:ENST00000418224.7:ENST00000618056.4:ENST00000441310.7:ENST00000342075.8:ENST00000409823.7:ENST00000450931.5:ENST00000421722.5:ENST00000447232.6:ENST00000447734.5:ENST00000424307.5:ENST00000424059.1:ENST00000409593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	5.72273	6.0565999999999995	6.39047	3.80762e-11	1e-12	5.38572e-9	1.73382e-10
chr4	41257126	41257222	2610149	0	+	0.791667	(0.629,1]	chr4	250015	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.87563	6.056065	6.2365	6.51376e-10	1.37912e-12	7.88358e-8	2.34064e-10
chr2	72344218	72344318	1486516	0	-	0.23	[0,0.32]	chr2	153820	88	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	5.58056	6.05576	6.53096	1.7046e-6	1.06284e-11	1.13343e-4	1.63406e-9
chr19	5637120	5637219	9273275	0	+	0.525253	(0.49,0.526]	chr19	894590	103	INTRON	INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000591666.5:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	5.92809	6.0547450000000005	6.1814	1.02462e-9	2.69895e-11	1.20726e-7	3.91566e-9
chr11	3794407	3794506	6542131	0	-	0.515152	(0.49,0.526]	chr11	594484	119	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	6.00347	6.05467	6.10587	4.64321e-10	6.5597e-11	5.72685e-8	9.0398e-9
chr9	91819393	91819493	5658281	0	-	0.43	(0.424,0.459]	chr9	506482	432	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	4.86761	6.0534	7.23919	1.77869e-12	1e-12	2.985e-10	1.72912e-10
chr20	56470199	56470299	9680092	0	+	0.4	(0.392,0.424]	chr20	956135	2	SS3_PROX	SS3_PROX:INTRON	RTF2	ENSG00000022277.13	ENST00000023939.8:ENST00000395881.7:ENST00000357348.10:ENST00000484084.5:ENST00000449062.1:ENST00000487211.5:ENST00000466260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	5.89904	6.0515550000000005	6.20407	2.16736e-8	2.05488e-10	2.09062e-6	2.64594e-8
chr1	197199723	197199816	829825	0	-	0.376344	(0.36,0.392]	chr1	92152	5	CDS	CDS:EXON_MRNA	ZBTB41	ENSG00000177888.8	ENST00000367405.5:ENST00000467322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.94393	6.048255	6.15258	1.58245e-8	1.50388e-9	1.55285e-6	1.73555e-7
chr2	181054793	181054893	1227507	0	+	0.38	(0.36,0.392]	chr2	128500	649	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	5.94393	6.048255	6.15258	1.58245e-8	1.50388e-9	1.55285e-6	1.73555e-7
chr1	68170826	68170926	648301	0	-	0.37	(0.36,0.392]	chr1	71925	112	INTRON	INTRON	WLS	ENSG00000116729.14	ENST00000354777.6:ENST00000262348.9:ENST00000370976.7:ENST00000497187.5:ENST00000534713.5:ENST00000530486.5:ENST00000533537.5:ENST00000370973.2:ENST00000471243.2:ENST00000491076.1:ENST00000527864.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	6.01711	6.048204999999999	6.0793	9.48035e-9	2.64141e-9	9.6816e-7	2.93923e-7
chr11	103078810	103078910	6723541	0	-	0.38	(0.36,0.392]	chr11	613722	119	INTRON	INTRON	DCUN1D5	ENSG00000137692.12	ENST00000260247.10:ENST00000527260.5:ENST00000531571.5:ENST00000531543.1:ENST00000529281.5:ENST00000529294.5:ENST00000527576.5:ENST00000527779.1:ENST00000583974.1:ENST00000525420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	6.01711	6.048204999999999	6.0793	9.48035e-9	2.64141e-9	9.6816e-7	2.93923e-7
chrX	72431057	72431157	10370536	0	-	0.52	(0.49,0.526]	chrX	1029654	82	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	407	2	5.77934	6.0474250000000005	6.31551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	42910614	42910714	9822275	0	+	0.59	(0.57,0.629]	chr21	973982	17	UTR3	UTR3:EXON_MRNA	NDUFV3	ENSG00000160194.18	ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding	12	325	2	5.58869	6.0467949999999995	6.5049	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	54203595	54203694	9385931	0	+	0.454545	(0.424,0.459]	chr19	915671	16	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	6.02948	6.044005	6.05853	1.8912e-9	7.70458e-10	2.1436e-7	9.22745e-8
chr5	37610736	37610836	3154160	0	+	0.48	(0.459,0.49]	chr5	291423	51	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	6.02588	6.040315	6.05475	5.95023e-10	2.70956e-10	7.22535e-8	3.40943e-8
chr17	30754493	30754592	8691753	0	+	0.424242	(0.392,0.424]	chr17	822890	108	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	34	2	5.67247	6.04019	6.40791	6.88871e-12	1e-12	1.07164e-9	1.72912e-10
chr6	165684230	165684330	4267580	0	-	0.42	(0.392,0.424]	chr6	386874	211	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	5.33485	6.04011	6.74537	4.44158e-11	1e-12	6.22225e-9	1.73382e-10
chr7	99345407	99345505	4487490	0	+	0.346939	(0.32,0.36]	chr7	403200	5	INTRON	INTRON	ARPC1A	ENSG00000241685.10	ENST00000262942.10:ENST00000432786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.69899	6.03876	6.37853	3.81705e-7	1.01957e-10	2.90385e-5	1.36475e-8
chr1	224253305	224253404	866529	0	-	0.464646	(0.459,0.49]	chr1	96381	26	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000489194.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000496393.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	5.61516	6.037885	6.46061	9.49302e-8	1e-12	8.06088e-6	1.72912e-10
chr12	48346455	48346551	7157762	0	-	0.385417	(0.36,0.392]	chr12	657559	6	INTRON	INTRON	ZNF641	ENSG00000167528.13	ENST00000547026.6:ENST00000544117.6:ENST00000301042.7:ENST00000448928.7:ENST00000549125.5:ENST00000548932.5:ENST00000550181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.86758	6.035315000000001	6.20305	5.98276e-8	4.41027e-10	5.2159e-6	5.4191e-8
chr1	211815070	211815170	852212	0	-	0.44	(0.424,0.459]	chr1	94912	215	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.82145	6.03508	6.24871	1.92567e-8	6.7358e-11	1.85307e-6	9.26681e-9
chr1	112965160	112965258	261446	0	+	0.581633	(0.57,0.629]	chr1	27056	12	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000428411.6:ENST00000435800.6:ENST00000420168.2:ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	5.91047	6.03467	6.15887	8.81034e-10	1.28776e-11	1.04499e-7	1.96737e-9
chr12	122895451	122895551	7309342	0	-	0.59	(0.57,0.629]	chr12	675026	1	SS5_PROX	SS5_PROX:INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5	protein_coding	protein_coding	protein_coding	protein_coding	5	160	2	5.99613	6.0325299999999995	6.06893	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	3111412	3111512	9694462	0	-	0.51	(0.49,0.526]	chr20	959007	7	INTRON	INTRON	UBOX5	ENSG00000185019.17	ENST00000348031.6:ENST00000217173.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	5.72527	6.03252	6.33977	1.60521e-8	1.64846e-12	1.5647e-6	2.75276e-10
chr11	18338574	18338674	6335935	0	+	0.49	(0.459,0.49]	chr11	568518	3	SS5_PROX	SS5_PROX:INTRON	GTF2H1	ENSG00000110768.12	ENST00000453096.6:ENST00000418116.6:ENST00000265963.9:ENST00000534641.5:ENST00000543932.5:ENST00000524753.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	5.40069	6.0322700000000005	6.66385	1.15324e-6	1e-12	7.95154e-5	1.73382e-10
chr3	142205684	142205783	2457075	0	-	0.292929	[0,0.32]	chr3	235810	5	INTRON	INTRON	GK5	ENSG00000175066.16	ENST00000392993.7:ENST00000492097.5:ENST00000480757.5:ENST00000460544.5:ENST00000487672.1:ENST00000466685.7:ENST00000472759.5:ENST00000489085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.76944	6.031115	6.29279	2.56854e-7	5.12663e-10	2.02856e-5	6.28454e-8
chr7	76623846	76623944	4438206	0	+	0.306122	[0,0.32]	chr7	399302	26	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	19	2	5.84024	6.030939999999999	6.22164	1.72569e-7	8.84932e-10	1.40017e-5	1.05098e-7
chr10	117023263	117023363	6267172	0	-	0.41	(0.392,0.424]	chr10	560767	178	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000392901.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.68223	6.029885	6.37754	1.931e-7	1.91154e-11	1.56398e-5	2.81903e-9
chr2	169951561	169951660	1204217	0	+	0.424242	(0.392,0.424]	chr2	126267	11	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000487689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	5.68223	6.029885	6.37754	1.931e-7	1.91154e-11	1.56398e-5	2.81903e-9
chr1	155009957	155010057	305559	0	+	0.58	(0.57,0.629]	chr1	33126	3	SS3_PROX	SS3_PROX:INTRON	ZBTB7B	ENSG00000160685.14	ENST00000417934.6:ENST00000368426.3:ENST00000535420.6:ENST00000483226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	4.95008	6.02816	7.10624	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	220209029	220209124	862891	0	-	0.431579	(0.424,0.459]	chr1	95902	10	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000484658.1:ENST00000474178.1:ENST00000692208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	5.45043	6.024795	6.59916	1.37268e-12	1e-12	2.33094e-10	1.73382e-10
chr18	21249992	21250092	9071286	0	+	0.45	(0.424,0.459]	chr18	876596	72	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	5.44826	6.024745	6.60123	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28590155	28590255	10007205	0	-	0.62	(0.57,0.629]	chr22	996542	1472	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.81895	6.023625	6.2283	3.22847e-9	3.76299e-12	3.54085e-7	6.09222e-10
chr2	47584727	47584827	1023277	0	+	0.43	(0.424,0.459]	chr2	110172	177	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000644092.1:ENST00000645339.1:ENST00000646415.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	54	2	4.90869	6.020849999999999	7.13301	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73831258	73831355	10373522	0	-	0.371134	(0.36,0.392]	chrX	1029956	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	4	66	2	5.57535	6.0171	6.45885	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	134924557	134924644	3323310	0	+	0.37931	(0.36,0.392]	chr5	305199	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCBD2:MTND6P4	ENSG00000132570.15:ENSG00000249119.1	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1:ENST00000506002.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	22	2	5.51205	6.016555	6.52106	2.39077e-6	2.09599e-12	1.5204e-4	3.49782e-10
chr20	23375897	23375995	9717448	0	-	0.459184	(0.424,0.459]	chr20	961703	15	UTR3	UTR3:EXON_MRNA	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	5.0371	6.01431	6.99152	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	39380389	39380488	8926261	0	-	0.373737	(0.36,0.392]	chr17	856396	368	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	5.02429	6.01314	7.00199	1.54207e-8	1e-12	1.51982e-6	1.73382e-10
chr7	105864792	105864892	4803880	0	-	0.5	(0.49,0.526]	chr7	431308	757	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	6.00347	6.01159	6.01971	4.64321e-10	2.59274e-10	5.72685e-8	3.28602e-8
chr6	131171872	131171972	3884593	0	+	0.4	(0.392,0.424]	chr6	354998	22	INTRON	INTRON	AKAP7	ENSG00000118507.18	ENST00000431975.7:ENST00000683794.1:ENST00000541650.5:ENST00000366358.2:ENST00000543815.5:ENST00000535150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	5.81564	6.009855	6.20407	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr10	121862205	121862305	6276806	0	-	0.49	(0.459,0.49]	chr10	561685	42	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	5.4814	6.007680000000001	6.53396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	45683278	45683378	600526	0	-	0.57	(0.526,0.57]	chr1	67389	217	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	5.30448	6.00699	6.7095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	165936724	165936824	2783282	0	+	0.46	(0.459,0.49]	chr4	263901	164	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	5.54928	6.006815	6.46435	2.53394e-7	1e-12	1.97194e-5	1.73382e-10
chr10	31340760	31340860	5827643	0	+	0.41	(0.392,0.424]	chr10	523947	183	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000558832.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	5.42695	6.00672	6.58649	8.08853e-12	1e-12	1.26105e-9	1.73382e-10
chr5	119330079	119330179	3292388	0	+	0.5	(0.49,0.526]	chr5	302619	134	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	5.90554	6.005705000000001	6.10587	1.93601e-9	6.5597e-11	2.18285e-7	9.0398e-9
chr8	108243859	108243958	5246220	0	-	0.40404	(0.392,0.424]	chr8	469256	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	5.43744	6.00273	6.56802	3.2826e-12	1e-12	5.32874e-10	1.72912e-10
chr6	17948707	17948807	4015462	0	-	0.49	(0.459,0.49]	chr6	363400	502	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	82	2	5.77944	6.002555	6.22567	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	93908561	93908659	5939746	0	+	0.357143	(0.32,0.36]	chr10	532803	16	UTR3	UTR3:EXON_MRNA:INTRON	SLC35G1	ENSG00000176273.15	ENST00000483386.5:ENST00000605679.5:ENST00000494992.5:ENST00000603665.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	20	2	5.51031	6.00149	6.49267	2.41138e-6	1.53492e-11	1.53938e-4	2.28984e-9
chrX	123676856	123676956	10421032	0	-	0.38	(0.36,0.392]	chrX	1033982	47	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	5.3888	6.00099	6.61318	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	4038952	4039052	8499902	0	-	0.34	(0.32,0.36]	chr16	796870	234	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000571889.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	5.61325	6.00098	6.38871	1.45077e-6	3.86634e-11	9.68953e-5	5.49052e-9
chr4	6794031	6794131	2565078	0	+	0.48	(0.459,0.49]	chr4	246510	108	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	5.61516	5.99934	6.38352	9.49302e-8	1.10534e-12	8.06088e-6	1.89699e-10
chr11	10269931	10270031	6562198	0	-	0.31	[0,0.32]	chr11	596549	756	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.58056	5.998670000000001	6.41678	1.7046e-6	7.3754e-11	1.13343e-4	1.00949e-8
chr5	44804243	44804343	3462476	0	-	0.3	[0,0.32]	chr5	318351	169	INTRON	INTRON	MRPS30-DT	ENSG00000251141.6	ENST00000503452.5:ENST00000514597.5:ENST00000505302.1:ENST00000508945.5:ENST00000508123.1:ENST00000503179.5:ENST00000505401.1:ENST00000505637.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	5.65119	5.9983699999999995	6.34555	1.20332e-6	1.33932e-10	8.2089e-5	1.78706e-8
chr8	144620093	144620193	5310629	0	-	0.61	(0.57,0.629]	chr8	475266	140	INTRON	INTRON	ARHGAP39	ENSG00000147799.12	ENST00000377307.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	5.91047	5.998200000000001	6.08593	8.81034e-10	4.46939e-11	1.04499e-7	6.29296e-9
chr7	40142073	40142173	4374458	0	+	0.46	(0.459,0.49]	chr7	394227	2	SS5_PROX	SS5_PROX:INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3:ENST00000444074.3:ENST00000416370.2:ENST00000413931.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	5.03291	5.99781	6.96271	2.04219e-10	1e-12	2.64445e-8	1.72912e-10
chr16	89469466	89469566	8624544	0	-	0.53	(0.526,0.57]	chr16	813747	378	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	5.66547	5.9975249999999996	6.32958	4.05077e-8	1.19194e-12	3.67181e-6	2.04402e-10
chr7	2370281	2370380	4285287	0	+	0.545455	(0.526,0.57]	chr7	388504	2	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	5.66547	5.9975249999999996	6.32958	4.05077e-8	1.19194e-12	3.67181e-6	2.04402e-10
chr11	47747285	47747383	6605963	0	-	0.540816	(0.526,0.57]	chr11	601539	5	INTRON	INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	5.9817	5.9969149999999996	6.01213	5.835e-10	2.82174e-10	7.10688e-8	3.5327e-8
chr17	43238560	43238660	8937847	0	-	0.5	(0.49,0.526]	chr17	859071	84	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	10	234	2	5.57142	5.996895	6.42237	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	74727263	74727363	9150062	0	+	0.48	(0.459,0.49]	chr18	882036	858	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	4.90223	5.99652	7.09081	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	37912743	37912843	575308	0	-	0.4	(0.392,0.424]	chr1	64883	209	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.83142	5.99473	6.15804	3.48252e-8	6.43194e-10	3.23132e-6	7.74888e-8
chr17	2605160	2605260	8628510	0	+	0.4	(0.392,0.424]	chr17	814605	104	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.83142	5.99473	6.15804	3.48252e-8	6.43194e-10	3.23132e-6	7.74888e-8
chr2	66583460	66583560	1057417	0	+	0.5	(0.49,0.526]	chr2	112590	89	INTRON	INTRON	LINC01798	ENSG00000232046.7	ENST00000433396.5	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	5.72527	5.994015	6.26276	1.60521e-8	6.58018e-12	1.5647e-6	1.03239e-9
chr8	19596074	19596174	5131993	0	-	0.51	(0.49,0.526]	chr8	459324	44	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000454498.6:ENST00000695899.1:ENST00000695900.1:ENST00000522854.5:ENST00000519222.5:ENST00000523262.5:ENST00000517494.1:ENST00000520003.5:ENST00000524213.5:ENST00000517651.5:ENST00000523227.5:ENST00000522573.5:ENST00000523919.5:ENST00000524112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	5.31358	5.993335	6.67309	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	7253098	7253198	8639727	0	+	0.34	(0.32,0.36]	chr17	816463	1	SS5_PROX	SS5_PROX:INTRON	ELP5	ENSG00000170291.16	ENST00000573699.6:ENST00000356683.7:ENST00000354429.7:ENST00000574255.6:ENST00000396628.7:ENST00000396627.7:ENST00000570500.6:ENST00000574993.6:ENST00000573657.6:ENST00000570322.6:ENST00000576496.5:ENST00000574841.2:ENST00000571146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.86583	5.992395	6.11896	6.04906e-8	4.65151e-9	5.40424e-6	4.96782e-7
chr8	123368957	123369057	5266748	0	-	0.33	(0.32,0.36]	chr8	470557	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5:ENST00000534257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.86583	5.992395	6.11896	6.04906e-8	4.65151e-9	5.40424e-6	4.96782e-7
chr9	5966225	5966325	5548075	0	-	0.35	(0.32,0.36]	chr9	499395	118	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000399933.8:ENST00000381461.6:ENST00000540714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.86583	5.992395	6.11896	6.04906e-8	4.65151e-9	5.40424e-6	4.96782e-7
chr7	75373215	75373315	4433497	0	+	0.57	(0.526,0.57]	chr7	398712	57	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	31	2	5.82267	5.991125	6.15958	4.36723e-9	3.4729e-11	4.70004e-7	4.95584e-9
chr5	154930058	154930157	3645085	0	-	0.454545	(0.424,0.459]	chr5	331896	10	INTRON	INTRON	GEMIN5	ENSG00000082516.9	ENST00000285873.8:ENST00000523355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.5376	5.98829	6.43898	4.83052e-7	2.53975e-12	3.58077e-5	4.16121e-10
chr12	111862456	111862556	7024376	0	+	0.49	(0.459,0.49]	chr12	642842	192	INTRON	INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6:ENST00000549875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	5.85163	5.98778	6.12393	5.06515e-9	1.31318e-10	5.39084e-7	1.71854e-8
chr9	33958535	33958634	5606507	0	-	0.454545	(0.424,0.459]	chr9	502119	20	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	5.94485	5.987165	6.02948	3.84993e-9	1.8912e-9	4.17496e-7	2.1436e-7
chr22	40078872	40078972	9946656	0	+	0.5	(0.49,0.526]	chr22	989390	329	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	5.48867	5.985564999999999	6.48246	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	31194317	31194417	8695531	0	+	0.43	(0.424,0.459]	chr17	823305	110	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000686189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	5.36884	5.984	6.59916	6.68643e-12	1e-12	1.046e-9	1.73382e-10
chr11	34957083	34957183	6369994	0	+	0.35	(0.32,0.36]	chr11	570843	3	SS3_PROX	SS3_PROX:INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.57866	5.9836849999999995	6.38871	3.86634e-11	4.88976e-12	5.49052e-9	7.80878e-10
chr12	6500421	6500521	6811281	0	+	0.43	(0.424,0.459]	chr12	621764	48	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	5.90595	5.98224	6.05853	1.00338e-8	7.70458e-10	1.01215e-6	9.22745e-8
chr4	140099860	140099960	3020620	0	-	0.38	(0.36,0.392]	chr4	282338	2085	INTRON	INTRON	MAML3	ENSG00000196782.13	ENST00000509479.6:ENST00000502696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.94393	5.98052	6.01711	1.58245e-8	9.48035e-9	1.55285e-6	9.6816e-7
chr8	94958878	94958977	5026476	0	+	0.363636	(0.36,0.392]	chr8	451382	3	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.94393	5.98052	6.01711	1.58245e-8	9.48035e-9	1.55285e-6	9.6816e-7
chr9	34045639	34045738	5607396	0	-	0.373737	(0.36,0.392]	chr9	502191	124	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000480885.5:ENST00000459988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	5.94393	5.98052	6.01711	1.58245e-8	9.48035e-9	1.55285e-6	9.6816e-7
chr15	55910529	55910628	8181607	0	-	0.414141	(0.392,0.424]	chr15	758950	49	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1:ENST00000502612.5:ENST00000514893.5:ENST00000507063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	79	2	5.22735	5.980345	6.73334	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	120498742	120498841	5079366	0	+	0.424242	(0.392,0.424]	chr8	454482	8	INTRON	INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	4.94115	5.9799050000000005	7.01866	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43265256	43265356	8938114	0	-	0.49	(0.459,0.49]	chr17	859071	351	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	11	228	2	5.91153	5.97961	6.04769	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	55095527	55095627	4390644	0	+	0.39	(0.36,0.392]	chr7	395429	516	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	4.46814	5.97814	7.48814	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	173321179	173321279	2792017	0	+	0.43	(0.424,0.459]	chr4	264376	2	SS3_PROX	SS3_PROX:INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000515862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	5.60095	5.977485	6.35402	6.61571e-12	1e-12	1.03402e-9	1.72912e-10
chr2	160321726	160321826	1592244	0	-	0.41	(0.392,0.424]	chr2	164953	31	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000409972.5:ENST00000491781.5:ENST00000428519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	5.68223	5.977095	6.27196	1.931e-7	1.10884e-10	1.56398e-5	1.47443e-8
chr1	229617384	229617484	880219	0	-	0.47	(0.459,0.49]	chr1	98113	25	INTRON	INTRON	TAF5L	ENSG00000135801.10	ENST00000258281.6:ENST00000366675.3:ENST00000477957.1:ENST00000366674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	5.73824	5.9769950000000005	6.21575	2.1921e-8	2.91337e-11	2.0899e-6	4.19646e-9
chr5	141937557	141937657	3343477	0	+	0.49	(0.459,0.49]	chr5	307109	2	SS5_PROX	SS5_PROX:INTRON	DELE1	ENSG00000081791.9	ENST00000194118.8:ENST00000432126.7:ENST00000507481.2:ENST00000509110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	5.73824	5.9769950000000005	6.21575	2.1921e-8	2.91337e-11	2.0899e-6	4.19646e-9
chr8	22412706	22412804	4945900	0	+	0.479592	(0.459,0.49]	chr8	442572	1	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.73824	5.9769950000000005	6.21575	2.1921e-8	2.91337e-11	2.0899e-6	4.19646e-9
chr19	23265171	23265270	9468646	0	-	0.464646	(0.459,0.49]	chr19	931671	14	INTRON	INTRON	ENSG00000284428	ENSG00000284428.1	ENST00000640838.1:ENST00000639752.1:ENST00000639327.1:ENST00000638822.1:ENST00000640517.1:ENST00000640354.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	5.80717	5.9768349999999995	6.1465	1.22616e-8	6.25785e-11	1.22232e-6	8.69617e-9
chr15	85039810	85039910	8068915	0	+	0.35	(0.32,0.36]	chr15	745864	571	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.69899	5.97678	6.25457	3.81705e-7	6.8782e-10	2.90385e-5	8.23717e-8
chr12	26054639	26054735	6848932	0	+	0.322917	(0.32,0.36]	chr12	625671	13	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5:ENST00000542004.5:ENST00000542315.5:ENST00000282884.13:ENST00000541218.5:ENST00000537946.5:ENST00000545413.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.80221	5.97652	6.15083	2.13657e-7	1.52443e-9	1.69216e-5	1.74447e-7
chr5	178611323	178611422	3676431	0	-	0.353535	(0.32,0.36]	chr5	334654	25	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	5.80221	5.97652	6.15083	2.13657e-7	1.52443e-9	1.69216e-5	1.74447e-7
chr3	124989987	124990087	2417221	0	-	0.59	(0.57,0.629]	chr3	231728	117	INTRON	INTRON	HEG1	ENSG00000173706.14	ENST00000311127.9:ENST00000487661.1:ENST00000650592.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	306	2	5.09807	5.97547	6.85287	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	130155601	130155700	6023865	0	+	0.535354	(0.526,0.57]	chr10	540450	99	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	5.24106	5.97528	6.7095	1.34659e-12	1e-12	2.28243e-10	1.72912e-10
chrX	74225606	74225706	10376614	0	-	0.46	(0.459,0.49]	chrX	1030052	65	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	5.41496	5.9744600000000005	6.53396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	19578678	19578778	5131815	0	-	0.48	(0.459,0.49]	chr8	459305	120	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000454498.6:ENST00000695899.1:ENST00000695900.1:ENST00000522854.5:ENST00000519222.5:ENST00000523262.5:ENST00000517494.1:ENST00000520003.5:ENST00000524213.5:ENST00000517651.5:ENST00000523227.5:ENST00000522573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	80	2	5.53686	5.972195	6.40753	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	61369314	61369413	167808	0	+	0.353535	(0.32,0.36]	chr1	19248	97	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000482020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	5.77349	5.97212	6.17075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	47904872	47904972	606066	0	-	0.32	[0,0.32]	chr1	68016	1029	INTRON	INTRON	TRABD2B	ENSG00000269113.4	ENST00000606738.3:ENST00000435576.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.93642	5.97189	6.00736	3.87502e-8	2.47801e-8	3.55241e-6	2.36756e-6
chr1	174571138	174571238	354159	0	+	0.32	[0,0.32]	chr1	38896	227	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.93642	5.97189	6.00736	3.87502e-8	2.47801e-8	3.55241e-6	2.36756e-6
chr10	97662968	97663068	5952941	0	+	0.3	[0,0.32]	chr10	533898	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PI4K2A	ENSG00000155252.13	ENST00000370631.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.93642	5.97189	6.00736	3.87502e-8	2.47801e-8	3.55241e-6	2.36756e-6
chr7	80534903	80535003	4450732	0	+	0.32	[0,0.32]	chr7	399984	96	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000648416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.93642	5.97189	6.00736	3.87502e-8	2.47801e-8	3.55241e-6	2.36756e-6
chr16	80974401	80974501	8608278	0	-	0.38	(0.36,0.392]	chr16	811551	81	UTR3	UTR3:EXON_MRNA	CMC2	ENSG00000103121.9	ENST00000219400.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.43936	5.967755	6.49615	3.42448e-6	6.03728e-12	2.10826e-4	9.57482e-10
chr2	44739141	44739240	1011130	0	+	0.444444	(0.424,0.459]	chr2	109452	150	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000477830.1:ENST00000613618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.6865	5.967605	6.24871	9.64047e-8	6.7358e-11	8.13052e-6	9.26681e-9
chr11	12711227	12711327	6325268	0	+	0.44	(0.424,0.459]	chr11	567852	353	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	7	120	2	5.58916	5.96654	6.34392	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	30281490	30281590	8906615	0	-	0.45	(0.424,0.459]	chr17	853544	69	INTRON	INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5:ENST00000577623.5:ENST00000581037.5:ENST00000584603.2:ENST00000582669.1:ENST00000579325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	5.67071	5.9664	6.26209	3.1274e-11	1e-12	4.50988e-9	1.72912e-10
chr17	49659365	49659464	8961391	0	-	0.424242	(0.392,0.424]	chr17	862118	119	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	5.42695	5.963455	6.49996	8.08853e-12	1.32305e-12	1.26105e-9	2.25204e-10
chr11	106681379	106681479	6728380	0	-	0.31	[0,0.32]	chr11	614079	75	UTR3	UTR3:EXON_MRNA	GUCY1A2	ENSG00000152402.11	ENST00000526355.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.76944	5.96328	6.15712	2.56854e-7	3.56277e-9	2.02856e-5	3.88104e-7
chr14	39069966	39070065	7813850	0	-	0.272727	[0,0.32]	chr14	719129	23	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.76944	5.96328	6.15712	2.56854e-7	3.56277e-9	2.02856e-5	3.88104e-7
chr5	59529668	59529768	3477544	0	-	0.23	[0,0.32]	chr5	319250	992	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.76944	5.96328	6.15712	2.56854e-7	3.56277e-9	2.02856e-5	3.88104e-7
chr8	30455703	30455802	4965160	0	+	0.50505	(0.49,0.526]	chr8	444788	15	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5:ENST00000522708.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	5.83024	5.9627099999999995	6.09518	4.05406e-9	1.11716e-10	4.37881e-7	1.47877e-8
chr8	67053233	67053332	5185486	0	-	0.494949	(0.49,0.526]	chr8	464712	15	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	5.90554	5.962625	6.01971	1.93601e-9	2.59274e-10	2.18285e-7	3.28602e-8
chr5	78050306	78050405	3509041	0	-	0.30303	[0,0.32]	chr5	321287	59	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	4.99923	5.96191	6.92459	2.26164e-11	1e-12	3.31105e-9	1.73382e-10
chr15	25067693	25067788	7927927	0	+	0.557895	(0.526,0.57]	chr15	731706	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000551077.2:ENST00000658769.1:ENST00000667925.1:ENST00000653407.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	5.82057	5.9583200000000005	6.09607	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	114746142	114746242	732898	0	-	0.31	[0,0.32]	chr1	78651	2	SS5_PROX	SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000534389.2:ENST00000525878.5:ENST00000525970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	5.95397	5.956335	5.9587	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	108447867	108447964	5069980	0	+	0.340206	(0.32,0.36]	chr8	453349	12	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000524143.5:ENST00000220853.8:ENST00000517593.5:ENST00000517784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	5.78289	5.955995	6.1291	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	117088300	117088400	271107	0	+	0.52	(0.49,0.526]	chr1	28004	1	SS3_PROX	SS3_PROX:INTRON	TTF2	ENSG00000116830.12	ENST00000369466.9	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	5.64478	5.955159999999999	6.26554	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	60639841	60639940	8759711	0	+	0.383838	(0.36,0.392]	chr17	833952	55	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000692386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	5.62785	5.952135	6.27642	5.69775e-7	2.38946e-10	4.16055e-5	3.06702e-8
chr16	85360648	85360748	8472743	0	+	0.55	(0.526,0.57]	chr16	792098	13	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	5.4384	5.951924999999999	6.46545	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	32933087	32933186	6103621	0	-	0.373737	(0.36,0.392]	chr10	547122	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000472147.1:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.70074	5.951895	6.20305	3.77982e-7	4.41027e-10	2.84782e-5	5.4191e-8
chr19	16231111	16231210	9299266	0	+	0.535354	(0.526,0.57]	chr19	899851	18	INTRON	INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000429941.6:ENST00000444449.6:ENST00000586543.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.92051	5.951105	5.9817	1.10942e-9	5.835e-10	1.30307e-7	7.10688e-8
chr18	35593354	35593454	9096823	0	+	0.49	(0.459,0.49]	chr18	878909	111	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	5.16672	5.950055	6.73339	7.74288e-6	1e-12	4.39068e-4	1.72912e-10
chr5	66041078	66041178	3196673	0	+	0.36	(0.32,0.36]	chr5	294806	22	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.64321	5.9488900000000005	6.25457	6.8782e-10	1e-12	8.23717e-8	1.73382e-10
chr11	9291604	9291702	6556939	0	-	0.602041	(0.57,0.629]	chr11	596231	27	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	5.85159	5.947035	6.04248	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	41219275	41219375	9817131	0	+	0.26	[0,0.32]	chr21	973271	503	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	12	140	2	5.82423	5.946015	6.0678	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	111705738	111705838	6492906	0	+	0.36	(0.32,0.36]	chr11	587000	2	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.51031	5.944419999999999	6.37853	2.41138e-6	1.01957e-10	1.53938e-4	1.36475e-8
chr10	110972872	110972972	5978784	0	+	0.44	(0.424,0.459]	chr10	537306	28	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000480155.2:ENST00000497305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	5.5376	5.94229	6.34698	4.83052e-7	1.28346e-11	3.58077e-5	1.9463e-9
chr3	54217798	54217897	1885436	0	+	0.444444	(0.424,0.459]	chr3	192350	199	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000492460.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.5376	5.94229	6.34698	4.83052e-7	1.28346e-11	3.58077e-5	1.9463e-9
chr12	118246083	118246180	7030923	0	+	0.731959	(0.629,1]	chr12	643933	1	EXON_PSEUDO	EXON_PSEUDO	RPS2P5	ENSG00000240342.3	ENST00000488803.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	70	2	5.06667	5.94087	6.81507	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	49580323	49580422	7817022	0	-	0.444444	(0.424,0.459]	chr14	719493	21	INTRON	INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	5.2725	5.93978	6.60706	1.84447e-11	1e-12	2.73328e-9	1.72912e-10
chr7	139388324	139388424	4567950	0	+	0.34	(0.32,0.36]	chr7	410461	118	INTRON	INTRON	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	5.51149	5.938905	6.36632	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	30288260	30288360	8544519	0	-	0.49	(0.459,0.49]	chr16	804186	3	SS5_PROX	SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	27	2	5.92066	5.93871	5.95676	2.70029e-9	1.17119e-9	2.98805e-7	1.35849e-7
chr2	47405201	47405301	1021458	0	+	0.47	(0.459,0.49]	chr2	110054	14	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	5.92066	5.93871	5.95676	2.70029e-9	1.17119e-9	2.98805e-7	1.35849e-7
chr12	116165475	116165575	7290574	0	-	0.5	(0.49,0.526]	chr12	672490	536	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.68716	5.937165	6.18717	3.37299e-8	1.66076e-11	3.12343e-6	2.50009e-9
chr8	94422115	94422215	5219959	0	-	0.32	[0,0.32]	chr8	467085	104	INTRON	INTRON	FSBP	ENSG00000265817.4	ENST00000517506.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	31	2	5.58056	5.937035	6.29351	1.7046e-6	1e-12	1.13343e-4	1.72912e-10
chr3	49378883	49378983	2275457	0	-	0.23	[0,0.32]	chr3	221269	29	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	5.58056	5.936675	6.29279	1.7046e-6	5.12663e-10	1.13343e-4	6.28454e-8
chr14	73092148	73092247	7696880	0	+	0.393939	(0.392,0.424]	chr14	707076	33	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	5.89904	5.93283	5.96662	2.16736e-8	6.28695e-9	2.09062e-6	6.5739e-7
chr4	164282572	164282672	3077070	0	-	0.42	(0.392,0.424]	chr4	284905	473	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000508725.5:ENST00000505391.5:ENST00000515471.5:ENST00000510075.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.89904	5.93283	5.96662	2.16736e-8	6.28695e-9	2.09062e-6	6.5739e-7
chr1	633831	633930	42	0	+	0.333333	(0.32,0.36]	chr1	5	4	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	22	245	2	5.68213	5.93265	6.18317	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	83061175	83061275	6676573	0	-	0.48	(0.459,0.49]	chr11	611702	6	INTRON	INTRON	RAB30	ENSG00000137502.10	ENST00000527633.6:ENST00000533486.5:ENST00000612684.4:ENST00000534141.5:ENST00000524635.1:ENST00000526205.5:ENST00000533276.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.54928	5.93172	6.31416	2.53394e-7	3.08209e-12	1.97194e-5	5.03634e-10
chr3	58161172	58161271	1899062	0	+	0.464646	(0.459,0.49]	chr3	193268	11	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000493452.5:ENST00000481470.5:ENST00000682297.1:ENST00000684439.1:ENST00000683114.1:ENST00000682503.1:ENST00000475487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	5.54928	5.93172	6.31416	2.53394e-7	3.08209e-12	1.97194e-5	5.03634e-10
chr3	52519263	52519333	1882927	0	+	0.614286	(0.57,0.629]	chr3	191897	1	CDS	CDS:EXON_MRNA	STAB1	ENSG00000010327.10	ENST00000321725.10:ENST00000461325.1:ENST00000481626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	5.43531	5.931010000000001	6.42671	2.83977e-7	1e-12	2.21461e-5	1.72912e-10
chr1	30966778	30966851	557900	0	-	0.465753	(0.459,0.49]	chr1	62059	1	SS5_PROX	SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000471894.1:ENST00000490546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	5.80717	5.930960000000001	6.05475	1.22616e-8	2.70956e-10	1.22232e-6	3.40943e-8
chr6	10761952	10762051	3706624	0	+	0.464646	(0.459,0.49]	chr6	337294	23	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000473807.5:ENST00000463100.5:ENST00000478732.1:ENST00000467229.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	27	2	5.80717	5.930960000000001	6.05475	1.22616e-8	2.70956e-10	1.22232e-6	3.40943e-8
chr3	142205585	142205684	2457074	0	-	0.444444	(0.424,0.459]	chr3	235810	4	INTRON	INTRON	GK5	ENSG00000175066.16	ENST00000392993.7:ENST00000492097.5:ENST00000480757.5:ENST00000460544.5:ENST00000487672.1:ENST00000466685.7:ENST00000472759.5:ENST00000489085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	5.82145	5.925465	6.02948	1.92567e-8	1.8912e-9	1.85307e-6	2.1436e-7
chr17	42275571	42275659	8933239	0	-	0.556818	(0.526,0.57]	chr17	858078	1	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	109	2	5.79213	5.922835	6.05354	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	63948675	63948775	9780768	0	-	0.61	(0.57,0.629]	chr20	970071	2	SS3_PROX	SS3_PROX:INTRON	UCKL1	ENSG00000198276.16	ENST00000354216.11:ENST00000358711.7:ENST00000369908.9:ENST00000483710.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	5.54822	5.9226399999999995	6.29706	8.11421e-8	1.45328e-12	7.06304e-6	2.44971e-10
chrX	150403907	150404007	10237639	0	+	0.27	[0,0.32]	chrX	1019427	400	INTRON	INTRON	MAMLD1	ENSG00000013619.15	ENST00000468306.1:ENST00000262858.8:ENST00000683453.1:ENST00000426613.5:ENST00000682016.1:ENST00000682253.1:ENST00000683696.1:ENST00000370401.7:ENST00000432680.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	5.10019	5.9177599999999995	6.73533	9.14777e-9	1e-12	9.40372e-7	1.72912e-10
chr12	20645495	20645593	6844832	0	+	0.265306	[0,0.32]	chr12	625101	52	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	5.54249	5.9176400000000005	6.29279	5.12663e-10	6.33171e-12	6.28454e-8	9.964250000000001e-10
chr11	9420094	9420186	6313383	0	+	0.48913	(0.459,0.49]	chr11	566557	3	SS3_PROX	SS3_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	5.68398	5.91524	6.1465	5.57196e-8	6.25785e-11	4.89622e-6	8.69617e-9
chr8	8367765	8367865	5107991	0	-	0.47	(0.459,0.49]	chr8	457971	278	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	5.68398	5.91524	6.1465	5.57196e-8	6.25785e-11	4.89622e-6	8.69617e-9
chr5	131581405	131581504	3593692	0	-	0.424242	(0.392,0.424]	chr5	326323	190	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	5.25887	5.913444999999999	6.56802	8.96274e-11	1e-12	1.21272e-8	1.72912e-10
chr8	98521544	98521644	5225215	0	-	0.35	(0.32,0.36]	chr8	467670	652	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000517832.1:ENST00000617590.1:ENST00000419617.7:ENST00000523601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.03749	5.913355	6.78922	9.65678e-5	1e-12	0.00399919	1.72912e-10
chr12	28505364	28505464	6859846	0	+	0.55	(0.526,0.57]	chr12	626475	208	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000381259.5:ENST00000540401.5:ENST00000542801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	501	2	5.79163	5.913275	6.03492	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	23881774	23881872	9905775	0	+	0.479592	(0.459,0.49]	chr22	983844	15	EXON_MRNA	EXON_MRNA:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	147	2	5.76743	5.911595	6.05576	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	201522739	201522838	395821	0	+	0.50505	(0.49,0.526]	chr1	42537	17	INTRON	INTRON	CSRP1-AS1:RPS10P7	ENSG00000224536.2:ENSG00000223396.4	ENST00000454651.2:ENST00000441932.1:ENST00000648727.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	0	29	2	5.72527	5.9102250000000005	6.09518	1.60521e-8	1.11716e-10	1.5647e-6	1.47877e-8
chr1	20598947	20599047	68317	0	+	0.36	(0.32,0.36]	chr1	6588	93	INTRON	INTRON	CDA	ENSG00000158825.6	ENST00000461985.1:ENST00000375071.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	4.81388	5.90902	7.00416	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46098396	46098496	8948384	0	-	0.35	(0.32,0.36]	chr17	860842	33	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	5.69899	5.908975	6.11896	3.81705e-7	4.65151e-9	2.90385e-5	4.96782e-7
chr17	43241360	43241460	8937875	0	-	0.66	(0.629,1]	chr17	859071	112	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	21	735	2	5.69474	5.908945	6.12315	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	39825809	39825909	7144024	0	-	0.34	(0.32,0.36]	chr12	656027	606	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	5.31061	5.907285	6.50396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	21227233	21227333	7772969	0	-	0.39	(0.36,0.392]	chr14	714934	138	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	5.79453	5.90582	6.01711	9.49031e-8	9.48035e-9	8.06088e-6	9.6816e-7
chr7	7187903	7188002	4303404	0	+	0.373737	(0.36,0.392]	chr7	390130	47	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	5.79453	5.90582	6.01711	9.49031e-8	9.48035e-9	8.06088e-6	9.6816e-7
chr8	19532918	19533017	5131356	0	-	0.383838	(0.36,0.392]	chr8	459299	10	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000454498.6:ENST00000695899.1:ENST00000695900.1:ENST00000522854.5:ENST00000519222.5:ENST00000523262.5:ENST00000517494.1:ENST00000520003.5:ENST00000524213.5:ENST00000517651.5:ENST00000523227.5:ENST00000522573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	5.79453	5.90582	6.01711	9.49031e-8	9.48035e-9	8.06088e-6	9.6816e-7
chr14	52871206	52871305	7831376	0	-	0.373737	(0.36,0.392]	chr14	721332	60	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000554152.5:ENST00000341590.8:ENST00000343279.8:ENST00000635305.1:ENST00000553373.5:ENST00000399304.7:ENST00000553768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.86758	5.905755	5.94393	5.98276e-8	1.58245e-8	5.2159e-6	1.55285e-6
chrX	41349303	41349401	10116422	0	+	0.397959	(0.392,0.424]	chrX	1008672	15	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000642589.1:ENST00000645380.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	5.39479	5.901350000000001	6.40791	4.26975e-6	6.88871e-12	2.57151e-4	1.07164e-9
chr1	176132148	176132248	810139	0	-	0.42	(0.392,0.424]	chr1	90124	151	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5:ENST00000498306.5:ENST00000491600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	5.59518	5.899625	6.20407	2.05488e-10	1e-12	2.64594e-8	1.72912e-10
chr20	35727726	35727824	9736067	0	-	0.571429	(0.57,0.629]	chr20	964208	22	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	5.5034	5.89897	6.29454	1.59473e-7	1.22125e-12	1.31413e-5	2.08948e-10
chr19	18002858	18002957	9305131	0	+	0.494949	(0.49,0.526]	chr19	901160	9	INTRON	INTRON	ARRDC2	ENSG00000105643.11	ENST00000379656.7	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	5.61207	5.896735	6.1814	6.35974e-8	2.69895e-11	5.62451e-6	3.91566e-9
chr1	93131032	93131131	233995	0	+	0.424242	(0.392,0.424]	chr1	23402	12	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5:ENST00000489480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	5.05503	5.89564	6.73625	2.39312e-9	1e-12	2.68297e-7	1.72912e-10
chr5	93988497	93988597	3542809	0	-	0.41	(0.392,0.424]	chr5	322930	236	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000506398.6:ENST00000504768.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	5.51907	5.895515	6.27196	1.10884e-10	1e-12	1.47443e-8	1.73382e-10
chr10	16747469	16747569	6071558	0	-	0.41	(0.392,0.424]	chr10	544290	200	INTRON	INTRON	RSU1:ENSG00000225213	ENSG00000148484.18:ENSG00000225213.2	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1:ENST00000421480.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	21	2	5.51581	5.893885	6.27196	1.07176e-6	1.10884e-10	7.36955e-5	1.47443e-8
chr10	73008963	73009049	6161234	0	-	0.406977	(0.392,0.424]	chr10	551492	3	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.58314	5.893605	6.20407	7.33041e-7	2.05488e-10	5.19799e-5	2.64594e-8
chr12	57421444	57421544	7182134	0	-	0.35	(0.32,0.36]	chr12	663024	253	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.29318	5.892925	6.49267	1.5251e-5	1.53492e-11	8.01855e-4	2.28984e-9
chr3	55072045	55072145	1894012	0	+	0.33	(0.32,0.36]	chr3	192549	534	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000478261.5:ENST00000471865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.29318	5.892925	6.49267	1.5251e-5	1.53492e-11	8.01855e-4	2.28984e-9
chr1	158008128	158008228	311598	0	+	0.66	(0.629,1]	chr1	34672	140	INTRON	INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	3	137	2	5.45253	5.891985	6.33144	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	95260830	95260927	6992670	0	+	0.360825	(0.36,0.392]	chr12	638577	22	INTRON	INTRON	VEZT	ENSG00000028203.19	ENST00000550803.5:ENST00000547611.5:ENST00000547997.5:ENST00000549002.5:ENST00000546557.5:ENST00000551746.5:ENST00000548838.5:ENST00000436874.6:ENST00000547484.5:ENST00000551472.5:ENST00000546398.5:ENST00000548455.5:ENST00000553063.5:ENST00000552660.5:ENST00000552626.5:ENST00000548245.5:ENST00000549624.5:ENST00000548822.5:ENST00000551994.5:ENST00000551039.5:ENST00000549192.5:ENST00000552821.5:ENST00000548371.5:ENST00000550106.5:ENST00000547894.5:ENST00000551695.5:ENST00000551356.5:ENST00000551311.5:ENST00000546365.5:ENST00000551902.5:ENST00000546445.5:ENST00000546409.5:ENST00000397792.8:ENST00000356859.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.62785	5.8902149999999995	6.15258	5.69775e-7	1.50388e-9	4.16055e-5	1.73555e-7
chr3	48923211	48923311	1864933	0	+	0.37	(0.36,0.392]	chr3	189109	4	SS5_PROX	SS5_PROX:INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000492077.5:ENST00000449376.5:ENST00000490095.5:ENST00000463738.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	5.62785	5.8902149999999995	6.15258	5.69775e-7	1.50388e-9	4.16055e-5	1.73555e-7
chr11	72092239	72092338	6636944	0	-	0.393939	(0.392,0.424]	chr11	608189	54	INTRON	INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	5.66966	5.89015	6.11064	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	50332408	50332508	6129800	0	-	0.39	(0.36,0.392]	chr10	549136	47	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1:ENST00000361543.3:ENST00000626236.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.70074	5.89002	6.0793	3.77982e-7	2.64141e-9	2.84782e-5	2.93923e-7
chr14	31419452	31419551	7796179	0	-	0.383838	(0.36,0.392]	chr14	718025	161	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000549185.5:ENST00000382464.6:ENST00000547378.1:ENST00000549184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.70074	5.89002	6.0793	3.77982e-7	2.64141e-9	2.84782e-5	2.93923e-7
chr18	3604391	3604472	9042133	0	+	0.382716	(0.36,0.392]	chr18	874528	1	SS5_PROX	SS5_PROX:INTRON	DLGAP1-AS2	ENSG00000262001.2	ENST00000572856.1:ENST00000692104.1:ENST00000687483.1:ENST00000693339.1:ENST00000689896.1:ENST00000691824.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	5.70074	5.89002	6.0793	3.77982e-7	2.64141e-9	2.84782e-5	2.93923e-7
chr10	96580707	96580806	6218629	0	-	0.30303	[0,0.32]	chr10	556201	33	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000475401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.43357	5.8895599999999995	6.34555	8.40147e-6	1.33932e-10	4.71048e-4	1.78706e-8
chr3	197102505	197102605	2533332	0	-	0.38	(0.36,0.392]	chr3	242988	111	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	5.07869	5.889234999999999	6.69978	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	23264256	23264356	1786378	0	+	0.29	[0,0.32]	chr3	183394	466	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6:ENST00000427371.3:ENST00000628311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.76944	5.888400000000001	6.00736	2.56854e-7	2.47801e-8	2.02856e-5	2.36756e-6
chr15	92884278	92884370	8086282	0	+	0.304348	[0,0.32]	chr15	747873	1	INTRON	INTRON	CHASERR	ENSG00000272888.8	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554669.6:ENST00000554894.5:ENST00000557147.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	5.84024	5.88833	5.93642	1.72569e-7	3.87502e-8	1.40017e-5	3.55241e-6
chr17	28121802	28121902	8683188	0	+	0.3	[0,0.32]	chr17	821607	730	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.84024	5.88833	5.93642	1.72569e-7	3.87502e-8	1.40017e-5	3.55241e-6
chr8	98045546	98045550	5222473	0	-	0.25	[0,0.32]	chr8	467505	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000521726.1:ENST00000517489.1:ENST00000521112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	5.84024	5.88833	5.93642	1.72569e-7	3.87502e-8	1.40017e-5	3.55241e-6
chr14	102779970	102780070	7761161	0	+	0.42	(0.392,0.424]	chr14	712627	19	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	4.88443	5.886455	6.88848	1.17264e-11	1e-12	1.79773e-9	1.73382e-10
chr5	370544	370643	3107902	0	+	0.656566	(0.629,1]	chr5	287801	8	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	15	507	2	5.49124	5.885175	6.27911	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	165709318	165709418	4267831	0	-	0.67	(0.629,1]	chr6	386874	462	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	5.43471	5.8846050000000005	6.3345	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	88700416	88700516	226733	0	+	0.35	(0.32,0.36]	chr1	22779	154	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.61325	5.88204	6.15083	1.45077e-6	1.52443e-9	9.68953e-5	1.74447e-7
chr12	57410576	57410676	7182025	0	-	0.55	(0.526,0.57]	chr12	663024	144	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	5.66547	5.88187	6.09827	4.05077e-8	7.17844e-11	3.67181e-6	9.84697e-9
chr4	185314585	185314684	2809064	0	+	0.575758	(0.57,0.629]	chr4	265513	34	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000512853.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	5.21587	5.880765	6.54566	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	35371493	35371592	9734066	0	-	0.515152	(0.49,0.526]	chr20	963762	45	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	5.48922	5.87599	6.26276	2.5213e-7	6.58018e-12	2.01203e-5	1.03239e-9
chr1	151436333	151436433	766353	0	-	0.4	(0.392,0.424]	chr1	83619	51	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	5.86962	5.875920000000001	5.88222	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	110355874	110355973	7444257	0	+	0.585859	(0.57,0.629]	chr13	685336	275	INTRON	INTRON	COL4A2	ENSG00000134871.19	ENST00000400163.7:ENST00000649101.1:ENST00000360467.7:ENST00000650540.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	5.75055	5.873535	5.99652	6.63557e-9	2.40464e-10	6.91177e-7	3.08159e-8
chr3	196396975	196397074	2530933	0	-	0.40404	(0.392,0.424]	chr3	242628	30	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000413584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	5.33485	5.87138	6.40791	4.44158e-11	6.88871e-12	6.22225e-9	1.07164e-9
chr16	88521720	88521820	8619591	0	-	0.65	(0.629,1]	chr16	813003	3	SS5_PROX	SS5_PROX:INTRON	ZFPM1-AS1	ENSG00000261744.1	ENST00000563243.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	5.80646	5.869695	5.93293	1.77728e-9	2.80251e-10	2.02683e-7	3.54906e-8
chr1	72030372	72030472	659051	0	-	0.31	[0,0.32]	chr1	72295	947	INTRON	INTRON	NEGR1	ENSG00000172260.15	ENST00000357731.10:ENST00000306821.3:ENST00000467479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.58056	5.8688400000000005	6.15712	1.7046e-6	3.56277e-9	1.13343e-4	3.88104e-7
chr11	122411632	122411732	6766347	0	-	0.31	[0,0.32]	chr11	617637	267	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	5.58056	5.8688400000000005	6.15712	1.7046e-6	3.56277e-9	1.13343e-4	3.88104e-7
chr3	186555484	186555584	2516330	0	-	0.32	[0,0.32]	chr3	240931	4	SS3_PROX	SS3_PROX:INTRON	TBCCD1	ENSG00000113838.13	ENST00000338733.10:ENST00000424280.5:ENST00000446782.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	5.10019	5.868475	6.63676	9.14777e-9	1.39611e-12	9.40372e-7	2.35903e-10
chr7	131117587	131117687	4546937	0	+	0.3	[0,0.32]	chr7	409196	70	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	5.10019	5.868475	6.63676	9.14777e-9	1.39611e-12	9.40372e-7	2.35903e-10
chr11	43452958	43453058	6379965	0	+	0.31	[0,0.32]	chr11	571538	13	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000525135.5:ENST00000525543.5:ENST00000533554.1:ENST00000418561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	5.71278	5.868315000000001	6.02385	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	204075477	204075576	406675	0	+	0.525253	(0.49,0.526]	chr1	43830	7	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	5.83024	5.86789	5.90554	4.05406e-9	1.93601e-9	4.37881e-7	2.18285e-7
chr6	4794404	4794504	3692321	0	+	0.52	(0.49,0.526]	chr6	336532	172	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	5.83024	5.86789	5.90554	4.05406e-9	1.93601e-9	4.37881e-7	2.18285e-7
chr17	30824222	30824322	8907304	0	-	0.61	(0.57,0.629]	chr17	853669	3	SS5_PROX	SS5_PROX:INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	5.65293	5.865325	6.07772	2.31977e-8	6.56155e-11	2.19827e-6	9.07364e-9
chr2	39065245	39065344	1424062	0	-	0.414141	(0.392,0.424]	chr2	148239	61	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.83142	5.86523	5.89904	3.48252e-8	2.16736e-8	3.23132e-6	2.09062e-6
chr22	28484568	28484668	10006149	0	-	0.42	(0.392,0.424]	chr22	996542	416	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.83142	5.86523	5.89904	3.48252e-8	2.16736e-8	3.23132e-6	2.09062e-6
chr16	69196034	69196133	8420013	0	+	0.525253	(0.49,0.526]	chr16	788774	79	INTRON	INTRON	UTP4:SNTB2	ENSG00000141076.18:ENSG00000168807.17	ENST00000567287.2:ENST00000467311.5:ENST00000336278.9:ENST00000525632.5:ENST00000524887.5:ENST00000360496.5:ENST00000528525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	5.72527	5.86437	6.00347	1.60521e-8	4.64321e-10	1.5647e-6	5.72685e-8
chr1	86378886	86378985	680735	0	-	0.515152	(0.49,0.526]	chr1	73973	21	INTRON	INTRON	ODF2L	ENSG00000122417.16	ENST00000359242.7:ENST00000460698.7:ENST00000696297.1:ENST00000696298.1:ENST00000696299.1:ENST00000696300.1:ENST00000696301.1:ENST00000696302.1:ENST00000696309.1:ENST00000696303.1:ENST00000370566.7:ENST00000488879.7:ENST00000696304.1:ENST00000294678.6:ENST00000317336.11:ENST00000696310.1:ENST00000496592.5:ENST00000479890.5:ENST00000478286.3:ENST00000472368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	5.80048	5.864285000000001	5.92809	8.0778e-9	1.02462e-9	8.33659e-7	1.20726e-7
chr8	67138561	67138656	4998736	0	+	0.315789	[0,0.32]	chr8	448557	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000675820.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1:ENST00000676656.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	4.72543	5.8637	7.00197	1.35488e-6	1e-12	9.17479e-5	1.73382e-10
chr9	37582934	37583030	5615320	0	-	0.458333	(0.424,0.459]	chr9	503617	4	UTR3	UTR3:EXON_MRNA	TOMM5	ENSG00000175768.13	ENST00000540941.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	22	2	5.82145	5.8637	5.90595	1.92567e-8	1.00338e-8	1.85307e-6	1.01215e-6
chr1	227156946	227157046	875592	0	-	0.37	(0.36,0.392]	chr1	97569	90	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.02429	5.862035	6.69978	1.54207e-8	1e-12	1.51982e-6	1.73382e-10
chr2	44555890	44555990	1009291	0	+	0.53	(0.526,0.57]	chr2	109413	52	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000407131.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	5.47956	5.86024	6.24092	8.32645e-12	1e-12	1.29188e-9	1.73382e-10
chr17	19966319	19966419	8893993	0	-	0.41	(0.392,0.424]	chr17	851704	29	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	131	2	5.76782	5.8601849999999995	5.95255	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	140214638	140214738	3335773	0	+	0.37	(0.36,0.392]	chr5	306215	196	INTRON	INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	5.2225	5.859325	6.49615	2.06042e-5	6.03728e-12	0.00103061	9.57482e-10
chr14	73884661	73884757	7699965	0	+	0.447917	(0.424,0.459]	chr14	707589	6	UTR3	UTR3:EXON_MRNA	PTGR2	ENSG00000140043.12	ENST00000555661.6:ENST00000555228.5:ENST00000267568.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.37155	5.859265000000001	6.34698	2.42251e-6	1.28346e-11	1.53938e-4	1.9463e-9
chr11	106019061	106019161	6727832	0	-	0.44	(0.424,0.459]	chr11	614017	76	INTRON	INTRON	MSANTD4	ENSG00000170903.12	ENST00000301919.9:ENST00000530788.1:ENST00000534458.1:ENST00000530108.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.45551	5.8588000000000005	6.26209	1.50668e-6	3.1274e-11	9.96778e-5	4.50988e-9
chr3	179570653	179570741	2115140	0	+	0.375	(0.36,0.392]	chr3	207037	4	SS5_PROX	SS5_PROX:INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000494843.5:ENST00000487978.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	5.51348	5.858265	6.20305	4.41027e-10	1e-12	5.4191e-8	1.72912e-10
chr14	63502030	63502130	7846163	0	-	0.44	(0.424,0.459]	chr14	722476	478	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	5.6865	5.85799	6.02948	9.64047e-8	1.8912e-9	8.13052e-6	2.1436e-7
chr8	67325464	67325564	5187374	0	-	0.44	(0.424,0.459]	chr8	464987	226	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.6865	5.85799	6.02948	9.64047e-8	1.8912e-9	8.13052e-6	2.1436e-7
chr12	76423090	76423178	7213556	0	-	0.363636	(0.36,0.392]	chr12	665555	6	UTR5	UTR5:EXON_MRNA:INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000546946.5:ENST00000548341.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.43936	5.857889999999999	6.27642	3.42448e-6	2.38946e-10	2.10826e-4	3.06702e-8
chr20	2958190	2958290	9555124	0	+	0.45	(0.424,0.459]	chr20	946019	21	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.77085	5.85785	5.94485	5.32819e-8	3.84993e-9	4.72329e-6	4.17496e-7
chr3	170143828	170143927	2490283	0	-	0.343434	(0.32,0.36]	chr3	238521	68	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	4.85778	5.855595	6.85341	1.99542e-10	1e-12	2.57666e-8	1.73382e-10
chr7	55068738	55068838	4390376	0	+	0.4	(0.392,0.424]	chr7	395429	248	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	5.05503	5.854805000000001	6.65458	2.39312e-9	1e-12	2.68297e-7	1.72912e-10
chr7	56017879	56017972	4721091	0	-	0.494624	(0.49,0.526]	chr7	423215	1	INTRON	INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000459834.5:ENST00000421626.5:ENST00000427797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	5.05393	5.854735	6.65554	9.44137e-11	1e-12	1.27331e-8	1.73382e-10
chr15	29768024	29768123	8113977	0	-	0.393939	(0.392,0.424]	chr15	750908	11	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	5.44324	5.853395000000001	6.26355	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	154953270	154953370	773666	0	-	0.61	(0.57,0.629]	chr1	84970	2	SS5_PROX	SS5_PROX:INTRON	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8:ENST00000368460.7:ENST00000498553.5:ENST00000490230.1:ENST00000493133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	5.54822	5.8514099999999996	6.1546	8.11421e-8	1.78502e-11	7.06304e-6	2.64822e-9
chrX	41339680	41339756	10116298	0	+	0.355263	(0.32,0.36]	chrX	1008612	2	INTRON	INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	156	2	5.33793	5.848535	6.35914	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	202800190	202800290	838913	0	-	0.5	(0.49,0.526]	chr1	93017	227	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	5.35492	5.847345	6.33977	1.0002e-6	1.64846e-12	7.00342e-5	2.75276e-10
chr3	39408363	39408444	1839740	0	+	0.481481	(0.459,0.49]	chr3	186470	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	676	2	5.67919	5.845715	6.01224	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	100092712	100092811	712068	0	-	0.484848	(0.459,0.49]	chr1	76155	41	INTRON	INTRON	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	5.54492	5.84571	6.1465	6.25785e-11	1e-12	8.69617e-9	1.72912e-10
chr8	139887566	139887666	5289981	0	-	0.51	(0.49,0.526]	chr8	472655	12	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000519482.1:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	5.20683	5.844645	6.48246	3.9703e-6	1e-12	2.39291e-4	1.72912e-10
chr18	12610291	12610391	9182203	0	-	0.44	(0.424,0.459]	chr18	884908	215	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	4.3511	5.844595	7.33809	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	171797236	171797336	2497032	0	-	0.42	(0.392,0.424]	chr3	239018	69	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5:ENST00000460926.1:ENST00000497307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	121	2	4.94584	5.84329	6.74074	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	97920949	97921049	1519297	0	-	0.4	(0.392,0.424]	chr2	158348	119	INTRON	INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000418629.6:ENST00000489507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	5.18656	5.84326	6.49996	1.32305e-12	1e-12	2.25204e-10	1.72912e-10
chr19	43892923	43893023	9355770	0	+	0.33	(0.32,0.36]	chr19	909785	18	EXON_MRNA	EXON_MRNA	ENSG00000278917	ENSG00000278917.1	ENST00000623722.1	TEC	TEC	TEC	TEC	1	26	2	5.00064	5.84284	6.68504	4.42887e-8	1e-12	3.9809e-6	1.73382e-10
chr7	103304990	103305085	4500769	0	+	0.421053	(0.392,0.424]	chr7	405456	1	INTRON	INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	5.59518	5.8427050000000005	6.09023	1.13607e-9	1e-12	1.32549e-7	1.72912e-10
chr1	184916907	184917007	822754	0	-	0.34	(0.32,0.36]	chr1	91293	172	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	5.55657	5.84167	6.12677	2.228e-12	1e-12	3.70774e-10	1.72912e-10
chr14	21244154	21244254	7773147	0	-	0.49	(0.459,0.49]	chr14	714969	73	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	5.41896	5.84144	6.26392	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	204483437	204483536	843014	0	-	0.444444	(0.424,0.459]	chr1	93787	132	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000415899.2:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	5.5376	5.840425	6.14325	4.83052e-7	3.56746e-10	3.58077e-5	4.46854e-8
chr11	12800026	12800126	6326158	0	+	0.39	(0.36,0.392]	chr11	567860	352	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	5.83062	5.839005	5.84739	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	72543119	72543219	8035196	0	+	0.53	(0.526,0.57]	chr15	742156	246	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	5.60452	5.8389500000000005	6.07338	6.77869e-8	1.42281e-10	5.95616e-6	1.85512e-8
chr11	126401829	126401928	6526063	0	+	0.515152	(0.49,0.526]	chr11	591646	82	INTRON	INTRON	ST3GAL4	ENSG00000110080.20	ENST00000534733.6:ENST00000531217.5:ENST00000227495.10:ENST00000676867.1:ENST00000678865.1:ENST00000676545.1:ENST00000444328.7:ENST00000677503.1:ENST00000677721.1:ENST00000530591.5:ENST00000534083.5:ENST00000356132.9:ENST00000528605.5:ENST00000526311.5:ENST00000528858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	5.34001	5.8386	6.33719	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	72664860	72664960	9003128	0	-	0.49	(0.459,0.49]	chr17	868446	152	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	85	2	5.25177	5.83854	6.42531	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	113749222	113749322	1957101	0	+	0.41	(0.392,0.424]	chr3	197069	17	INTRON	INTRON	ATP6V1A	ENSG00000114573.10	ENST00000462855.1:ENST00000273398.8:ENST00000470455.5:ENST00000496747.5:ENST00000475322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	5.74583	5.838195	5.93056	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	53175450	53175548	7168685	0	-	0.418367	(0.392,0.424]	chr12	660025	13	INTRON	INTRON	CSAD	ENSG00000139631.20	ENST00000444623.6:ENST00000267085.8:ENST00000379850.7:ENST00000379846.5:ENST00000453446.6:ENST00000437073.5:ENST00000424990.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.58314	5.836685	6.09023	7.33041e-7	1.13607e-9	5.19799e-5	1.32549e-7
chr14	102324990	102325089	7758129	0	+	0.393939	(0.392,0.424]	chr14	712385	46	INTRON	INTRON	ZNF839	ENSG00000022976.16	ENST00000558850.5:ENST00000559185.5:ENST00000442396.7:ENST00000559098.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.58314	5.836685	6.09023	7.33041e-7	1.13607e-9	5.19799e-5	1.32549e-7
chr15	42483960	42484059	8142387	0	-	0.393939	(0.392,0.424]	chr15	754016	113	INTRON	INTRON	ZNF106	ENSG00000103994.18	ENST00000564754.7:ENST00000565380.5:ENST00000567041.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.58314	5.836685	6.09023	7.33041e-7	1.13607e-9	5.19799e-5	1.32549e-7
chr22	28279797	28279897	10004097	0	-	0.36	(0.32,0.36]	chr22	996519	1158	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.29318	5.8358550000000005	6.37853	1.5251e-5	1.01957e-10	8.01855e-4	1.36475e-8
chr9	128654748	128654848	5745860	0	-	0.53	(0.526,0.57]	chr9	515359	135	INTRON	INTRON	DYNC2I2	ENSG00000119333.12	ENST00000372715.7:ENST00000419989.2:ENST00000451652.5:ENST00000480613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	5.82057	5.83521	5.84985	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155526810	155526910	777089	0	-	0.33	(0.32,0.36]	chr1	85749	48	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.69899	5.834125	5.96926	3.81705e-7	3.15048e-8	2.90385e-5	2.93512e-6
chr16	69219198	69219298	8420245	0	+	0.33	(0.32,0.36]	chr16	788774	311	INTRON	INTRON	UTP4:SNTB2	ENSG00000141076.18:ENSG00000168807.17	ENST00000567287.2:ENST00000467311.5:ENST00000336278.9:ENST00000525632.5:ENST00000524887.5:ENST00000360496.5:ENST00000528525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.80221	5.83402	5.86583	2.13657e-7	6.04906e-8	1.69216e-5	5.40424e-6
chr5	132380071	132380170	3317034	0	+	0.555556	(0.526,0.57]	chr5	304244	17	EXON_MRNA	EXON_MRNA:INTRON	SLC22A5	ENSG00000197375.14	ENST00000245407.8:ENST00000435065.7:ENST00000693763.1:ENST00000687740.1:ENST00000692413.1:ENST00000689271.1:ENST00000693308.1:ENST00000690900.1:ENST00000686757.1:ENST00000448810.6:ENST00000415928.6:ENST00000437841.6:ENST00000692825.1:ENST00000461013.5:ENST00000692355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	5.80439	5.833855	5.86332	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	131109552	131109636	4849227	0	-	0.690476	(0.629,1]	chr7	434523	4	SS5_PROX	SS5_PROX:INTRON	LINC-PINT	ENSG00000231721.7	ENST00000451786.5	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	5.79102	5.833325	5.87563	2.26028e-9	6.51376e-10	2.53515e-7	7.88358e-8
chr12	982564	982663	7065405	0	-	0.383838	(0.36,0.392]	chr12	648413	51	INTRON	INTRON	RAD52:ENSG00000250132	ENSG00000002016.18:ENSG00000250132.6	ENST00000430095.6:ENST00000503602.6:ENST00000545629.5:ENST00000539259.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	27	2	5.067	5.83081	6.59462	4.85192e-9	1e-12	5.20289e-7	1.72912e-10
chr17	2709953	2710053	8845241	0	-	0.6	(0.57,0.629]	chr17	844538	50	INTRON	INTRON	CLUH	ENSG00000132361.18	ENST00000570628.6:ENST00000574426.7:ENST00000435359.5:ENST00000651024.2:ENST00000576885.5:ENST00000576309.5:ENST00000571566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	5.81895	5.830465	5.84198	3.22847e-9	1.89943e-9	3.54085e-7	2.14969e-7
chr17	31958661	31958761	8697853	0	+	0.47	(0.459,0.49]	chr17	823660	106	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.73824	5.82945	5.92066	2.1921e-8	2.70029e-9	2.0899e-6	2.98805e-7
chr19	52820692	52820790	9534538	0	-	0.428571	(0.424,0.459]	chr19	942709	23	INTRON	INTRON	ZNF28	ENSG00000198538.11	ENST00000457749.7:ENST00000391783.6:ENST00000596559.5:ENST00000594602.5:ENST00000464469.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	5.67071	5.828284999999999	5.98586	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	29555276	29555370	10010036	0	-	0.553191	(0.526,0.57]	chr22	997024	6	UTR3	UTR3:EXON_MRNA	NIPSNAP1	ENSG00000184117.12	ENST00000216121.12	protein_coding	protein_coding	protein_coding	protein_coding	6	134	2	5.40844	5.82775	6.24706	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	103145185	103145285	6480993	0	+	0.31	[0,0.32]	chr11	585620	14	INTRON	INTRON	DYNC2H1	ENSG00000187240.17	ENST00000648198.1:ENST00000375735.7:ENST00000650373.2:ENST00000649323.1:ENST00000334267.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.43357	5.827605	6.22164	8.40147e-6	8.84932e-10	4.71048e-4	1.05098e-7
chr12	50596190	50596290	6909160	0	+	0.28	[0,0.32]	chr12	629879	906	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	5.43357	5.827605	6.22164	8.40147e-6	8.84932e-10	4.71048e-4	1.05098e-7
chr2	112216072	112216171	1548934	0	-	0.454545	(0.424,0.459]	chr2	160508	47	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H8	ENSG00000144161.14	ENST00000409573.7:ENST00000476902.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	99	2	5.4323	5.827439999999999	6.22258	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	49339908	49340008	8960410	0	-	0.51	(0.49,0.526]	chr17	861984	170	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	5.04122	5.82676	6.6123	6.36415e-11	1e-12	8.81514e-9	1.72912e-10
chr2	27313844	27313940	1406953	0	-	0.489583	(0.459,0.49]	chr2	146044	3	INTRON	INTRON	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5:ENST00000621183.4:ENST00000415514.5:ENST00000403262.6:ENST00000617583.4:ENST00000428910.5:ENST00000621470.4:ENST00000622003.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	5.19135	5.8259799999999995	6.46061	1.19432e-11	1e-12	1.83308e-9	1.72912e-10
chr2	216147383	216147482	1309312	0	+	0.515152	(0.49,0.526]	chr2	134624	57	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	5.05393	5.825585	6.59724	9.44137e-11	1e-12	1.27331e-8	1.73382e-10
chr12	56438724	56438824	7177646	0	-	0.37	(0.36,0.392]	chr12	662112	41	INTRON	INTRON	TIMELESS	ENSG00000111602.12	ENST00000553532.6:ENST00000229201.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.62785	5.82248	6.01711	5.69775e-7	9.48035e-9	4.16055e-5	9.6816e-7
chr20	41560821	41560921	9746487	0	-	0.39	(0.36,0.392]	chr20	965587	91	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.62785	5.82248	6.01711	5.69775e-7	9.48035e-9	4.16055e-5	9.6816e-7
chr11	9893345	9893444	6558398	0	-	0.383838	(0.36,0.392]	chr11	596414	346	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000688344.1:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000689597.1:ENST00000530741.2:ENST00000689674.1:ENST00000690003.1:ENST00000693181.1:ENST00000533770.6:ENST00000420722.3:ENST00000688417.1:ENST00000687210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	5.70074	5.822335	5.94393	3.77982e-7	1.58245e-8	2.84782e-5	1.55285e-6
chr6	135316994	135317091	4206515	0	-	0.360825	(0.36,0.392]	chr6	382666	5	UTR3	UTR3:EXON_MRNA:INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000681331.1:ENST00000367800.8:ENST00000265602.11:ENST00000681196.1:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000680071.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000533029.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000680157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.70074	5.822335	5.94393	3.77982e-7	1.58245e-8	2.84782e-5	1.55285e-6
chr8	120498841	120498939	5079367	0	+	0.387755	(0.36,0.392]	chr8	454482	9	INTRON	INTRON	MTBP	ENSG00000172167.8	ENST00000305949.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.70074	5.822335	5.94393	3.77982e-7	1.58245e-8	2.84782e-5	1.55285e-6
chr5	140255140	140255240	3622075	0	-	0.41	(0.392,0.424]	chr5	328838	87	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	5.33485	5.82222	6.30959	4.44158e-11	3.72697e-11	6.22225e-9	5.32557e-9
chr6	89834225	89834325	3834680	0	+	0.51	(0.49,0.526]	chr6	351400	25	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	5.46426	5.819775	6.17529	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	40076335	40076432	4374144	0	+	0.28866000000000003	[0,0.32]	chr7	394185	23	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	5.1772	5.818435	6.45967	5.87341e-5	2.0258e-11	0.00262682	2.97161e-9
chr2	181914815	181914915	1228840	0	+	0.45	(0.424,0.459]	chr2	128745	2	SS3_PROX	SS3_PROX:INTRON	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000491720.5:ENST00000409136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	5.28236	5.8181899999999995	6.35402	3.39052e-11	6.61571e-12	4.85335e-9	1.03402e-9
chr10	92193934	92194034	6204652	0	-	0.46	(0.459,0.49]	chr10	554721	9	INTRON	INTRON	CPEB3	ENSG00000107864.15	ENST00000265997.5:ENST00000412050.8:ENST00000614585.4	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.33218	5.817125	6.30207	1.78412e-6	6.43707e-12	1.1709e-4	1.01538e-9
chr15	85497344	85497444	8071118	0	+	0.49	(0.459,0.49]	chr15	746015	112	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.40069	5.81673	6.23277	1.15324e-6	1.44494e-11	7.95154e-5	2.19068e-9
chr22	29929044	29929144	9925079	0	+	0.47	(0.459,0.49]	chr22	985720	453	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	5.40069	5.81673	6.23277	1.15324e-6	1.44494e-11	7.95154e-5	2.19068e-9
chr3	177177601	177177701	2499806	0	-	0.34	(0.32,0.36]	chr3	239263	63	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	5.51031	5.814635	6.11896	2.41138e-6	4.65151e-9	1.53938e-4	4.96782e-7
chr1	84135070	84135170	221616	0	+	0.34	(0.32,0.36]	chr1	22337	563	INTRON	INTRON	PRKACB	ENSG00000142875.20	ENST00000370689.6:ENST00000370688.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.61325	5.814305	6.01536	1.45077e-6	9.59726e-9	9.68953e-5	9.74486e-7
chr6	128463231	128463331	4192641	0	-	0.34	(0.32,0.36]	chr6	381442	535	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.61325	5.814305	6.01536	1.45077e-6	9.59726e-9	9.68953e-5	9.74486e-7
chr7	133511257	133511357	4553360	0	+	0.34	(0.32,0.36]	chr7	409402	272	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	5.61325	5.814305	6.01536	1.45077e-6	9.59726e-9	9.68953e-5	9.74486e-7
chrX	136857342	136857442	10447831	0	-	0.36	(0.32,0.36]	chrX	1035596	84	INTRON	INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	5.61325	5.814305	6.01536	1.45077e-6	9.59726e-9	9.68953e-5	9.74486e-7
chr20	34035932	34036031	9630744	0	+	0.474747	(0.459,0.49]	chr20	950620	23	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	5.4814	5.81395	6.1465	6.25785e-11	1e-12	8.69617e-9	1.72912e-10
chr7	23301715	23301814	4329441	0	+	0.464646	(0.459,0.49]	chr7	391462	3	INTRON	INTRON	MALSU1	ENSG00000156928.5	ENST00000466681.2:ENST00000287543.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	5.23503	5.81312	6.39121	5.25256e-6	1e-12	3.11102e-4	1.73382e-10
chr3	167688488	167688587	2482144	0	-	0.353535	(0.32,0.36]	chr3	238105	4	INTRON	INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	5.7576	5.8117149999999995	5.86583	6.04906e-8	1e-12	5.40424e-6	1.72912e-10
chrX	73851624	73851724	10373729	0	-	0.43	(0.424,0.459]	chrX	1029968	143	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	4	70	2	5.34659	5.810305	6.27402	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	32819114	32819207	100549	0	+	0.526882	(0.526,0.57]	chr1	11332	4	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000482212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	262	2	5.1591	5.810005	6.46091	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	119098914	119099013	738343	0	-	0.50505	(0.49,0.526]	chr1	79213	165	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	5.35492	5.80884	6.26276	1.0002e-6	6.58018e-12	7.00342e-5	1.03239e-9
chr9	130699688	130699786	5514974	0	+	0.520408	(0.49,0.526]	chr9	495025	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000490641.5:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000691956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	5.42971	5.80844	6.18717	5.89334e-7	1.66076e-11	4.28084e-5	2.50009e-9
chr2	10651703	10651802	1379252	0	-	0.50505	(0.49,0.526]	chr2	142805	70	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	5.68716	5.807625	5.92809	3.37299e-8	1.02462e-9	3.12343e-6	1.20726e-7
chr21	31729369	31729468	9855729	0	-	0.363636	(0.36,0.392]	chr21	978079	227	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	5.2225	5.806485	6.39047	2.06042e-5	3.80762e-11	0.00103061	5.38572e-9
chr19	48868527	48868617	9523909	0	-	0.511111	(0.49,0.526]	chr19	940725	6	UTR5	UTR5:EXON_MRNA	PLEKHA4	ENSG00000105559.12	ENST00000263265.11	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	5.27363	5.80541	6.33719	1.61215e-12	1e-12	2.70476e-10	1.73382e-10
chr2	186645085	186645185	1231705	0	+	0.32	[0,0.32]	chr2	129210	31	INTRON	INTRON	ITGAV	ENSG00000138448.12	ENST00000261023.8:ENST00000374907.7:ENST00000433736.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.76944	5.8048400000000004	5.84024	2.56854e-7	1.72569e-7	2.02856e-5	1.40017e-5
chr7	82379821	82379921	4761760	0	-	0.27	[0,0.32]	chr7	426511	298	INTRON	INTRON	CACNA2D1	ENSG00000153956.16	ENST00000356860.8:ENST00000356253.9:ENST00000423588.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.76944	5.8048400000000004	5.84024	2.56854e-7	1.72569e-7	2.02856e-5	1.40017e-5
chr8	56988036	56988135	5173180	0	-	0.313131	[0,0.32]	chr8	463859	75	INTRON	INTRON	BPNT2	ENSG00000104331.9	ENST00000262644.9:ENST00000517461.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.76944	5.8048400000000004	5.84024	2.56854e-7	1.72569e-7	2.02856e-5	1.40017e-5
chr5	59025183	59025283	3472475	0	-	0.26	[0,0.32]	chr5	319164	254	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000358923.10:ENST00000503258.5:ENST00000405755.6:ENST00000515011.5:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	4.68069	5.80264	6.92459	5.05568e-9	1e-12	5.38161e-7	1.73382e-10
chrX	118371231	118371331	10207694	0	+	0.45	(0.424,0.459]	chrX	1016544	243	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	5.57419	5.80232	6.03045	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	63649646	63649745	6619039	0	-	0.474747	(0.459,0.49]	chr11	604500	27	INTRON	INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.4806	5.802265	6.12393	4.11395e-7	1.31318e-10	3.09732e-5	1.71854e-8
chr7	45740911	45741010	4712434	0	-	0.393939	(0.392,0.424]	chr7	422465	10	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000398921.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	20	2	5.32767	5.799815000000001	6.27196	5.95442e-6	1.10884e-10	3.4453e-4	1.47443e-8
chr2	182375188	182375288	1635973	0	-	0.41	(0.392,0.424]	chr2	168577	1104	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	5.63767	5.797924999999999	5.95818	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	48835766	48835865	2617574	0	+	0.434343	(0.424,0.459]	chr4	250787	19	INTRON	INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	5.6865	5.796225	5.90595	9.64047e-8	1.00338e-8	8.13052e-6	1.01215e-6
chr2	210635724	210635822	1296717	0	+	0.285714	[0,0.32]	chr2	134181	41	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1:ENST00000497121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	109	2	5.51834	5.79519	6.07204	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	2726624	2726724	5533944	0	-	0.54	(0.526,0.57]	chr9	498615	57	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	28	2	5.3474	5.79416	6.24092	1.05485e-6	8.32645e-12	7.33447e-5	1.29188e-9
chr2	168542296	168542396	1197664	0	+	0.32	[0,0.32]	chr2	125650	853	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.58056	5.79396	6.00736	1.7046e-6	2.47801e-8	1.13343e-4	2.36756e-6
chr3	15006408	15006508	1777244	0	+	0.31	[0,0.32]	chr3	182691	14	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000413118.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000437120.5:ENST00000617312.4:ENST00000406272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	5.65119	5.793805	5.93642	1.20332e-6	3.87502e-8	8.2089e-5	3.55241e-6
chr7	117038577	117038677	4523852	0	+	0.3	[0,0.32]	chr7	407313	152	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	5.65119	5.793805	5.93642	1.20332e-6	3.87502e-8	8.2089e-5	3.55241e-6
chr5	370643	370743	3107903	0	+	0.66	(0.629,1]	chr5	287801	9	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	19	616	2	5.52919	5.793005	6.05682	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	85446867	85446966	674107	0	-	0.414141	(0.392,0.424]	chr1	73451	425	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	5.10803	5.791975000000001	6.47592	3.31901e-12	1e-12	5.37234e-10	1.73382e-10
chr22	29647173	29647273	9924055	0	+	0.41	(0.392,0.424]	chr22	985625	45	INTRON	INTRON	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000672805.1:ENST00000403435.5:ENST00000672461.1:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1:ENST00000403999.7:ENST00000334961.11:ENST00000353887.8:ENST00000432151.5:ENST00000361676.8:ENST00000397789.3:ENST00000673312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.68223	5.790635	5.89904	1.931e-7	2.16736e-8	1.56398e-5	2.09062e-6
chr9	17360323	17360422	5343641	0	+	0.424242	(0.392,0.424]	chr9	477760	175	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.68223	5.790635	5.89904	1.931e-7	2.16736e-8	1.56398e-5	2.09062e-6
chr14	23092104	23092201	7777518	0	-	0.42268	(0.392,0.424]	chr14	716047	11	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.74972	5.79057	5.83142	1.25981e-7	3.48252e-8	1.05791e-5	3.23132e-6
chr22	36025339	36025439	10028579	0	-	0.42	(0.392,0.424]	chr22	998807	638	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.74972	5.79057	5.83142	1.25981e-7	3.48252e-8	1.05791e-5	3.23132e-6
chr5	43504510	43504610	3168060	0	+	0.42	(0.392,0.424]	chr5	292419	139	INTRON	INTRON	ENSG00000249492	ENSG00000249492.3	ENST00000505645.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	5.74972	5.79057	5.83142	1.25981e-7	3.48252e-8	1.05791e-5	3.23132e-6
chr13	51422929	51423002	7528769	0	-	0.369863	(0.36,0.392]	chr13	692504	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6:ENST00000491723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	70	2	4.70811	5.79006	6.87201	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	111453060	111453160	4818237	0	-	0.35	(0.32,0.36]	chr7	431941	603	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	9	106	2	5.49555	5.78931	6.08307	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	35028837	35028937	9731533	0	-	0.35	(0.32,0.36]	chr20	963540	71	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	5.39635	5.785410000000001	6.17447	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	18536622	18536718	9983466	0	-	0.614583	(0.57,0.629]	chr22	993651	9	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	PI4KAP1	ENSG00000274602.5	ENST00000610959.4:ENST00000652586.1:ENST00000617243.4:ENST00000619742.4:ENST00000618794.4:ENST00000612579.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	47	2	5.27183	5.784445	6.29706	1.45328e-12	1e-12	2.44971e-10	1.73382e-10
chr11	12879942	12880042	6326965	0	+	0.49	(0.459,0.49]	chr11	567888	1	SS5_PROX	SS5_PROX:INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	11	193	2	5.36587	5.78365	6.20143	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	118068506	118068606	5258742	0	-	0.44	(0.424,0.459]	chr8	469756	514	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.62178	5.783315	5.94485	2.83203e-7	3.84993e-9	2.17914e-5	4.17496e-7
chr1	12585044	12585143	520672	0	-	0.494949	(0.49,0.526]	chr1	56279	40	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	266	2	5.28756	5.78249	6.27742	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	225633303	225633403	869659	0	-	0.54	(0.526,0.57]	chr1	96794	532	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	5.65874	5.78179	5.90484	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	66356353	66356453	8779449	0	+	0.6	(0.57,0.629]	chr17	835622	164	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	5.65293	5.7817	5.91047	2.31977e-8	8.81034e-10	2.19827e-6	1.04499e-7
chr3	119979397	119979495	2401456	0	-	0.632653	(0.629,1]	chr3	230139	25	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000678787.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677128.1:ENST00000678608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	5.27579	5.78015	6.28451	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	75386189	75386289	9010407	0	-	0.57	(0.526,0.57]	chr17	869137	530	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	5.48168	5.7775300000000005	6.07338	2.6732e-7	1.42281e-10	2.09843e-5	1.85512e-8
chr17	75967945	75968045	9012815	0	-	0.54	(0.526,0.57]	chr17	869905	72	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	5.54252	5.777324999999999	6.01213	1.66713e-7	2.82174e-10	1.36401e-5	3.5327e-8
chr3	37861400	37861500	2236980	0	-	0.74	(0.629,1]	chr3	216484	3	SS5_PROX	SS5_PROX:INTRON	ITGA9-AS1	ENSG00000235257.10	ENST00000653023.1:ENST00000663634.1:ENST00000663533.1:ENST00000653285.1:ENST00000655095.1:ENST00000660790.1:ENST00000420870.6:ENST00000670835.1:ENST00000438136.5:ENST00000450990.5:ENST00000657484.1:ENST00000660349.1:ENST00000660845.1:ENST00000445429.5:ENST00000457661.5:ENST00000630010.2:ENST00000629314.2:ENST00000614028.4:ENST00000630986.2:ENST00000429532.5:ENST00000366441.4:ENST00000686387.1:ENST00000684787.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	5.49097	5.7765450000000005	6.06212	9.87659e-8	3.45149e-11	8.31085e-6	4.93404e-9
chr6	87229927	87230027	3829956	0	+	0.45	(0.424,0.459]	chr6	350916	61	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	5.70426	5.776495	5.84873	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	45796073	45796166	4388427	0	+	0.419355	(0.392,0.424]	chr7	395265	5	INTRON	INTRON	GTF2IP13	ENSG00000272556.3	ENST00000609439.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	19	2	5.51581	5.775075	6.03434	1.07176e-6	3.73254e-9	7.36955e-5	4.03186e-7
chr1	200760038	200760138	394226	0	+	0.42	(0.392,0.424]	chr1	42304	197	INTRON	INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.58314	5.77488	5.96662	7.33041e-7	6.28695e-9	5.19799e-5	6.5739e-7
chr1	21164064	21164164	537637	0	-	0.33	(0.32,0.36]	chr1	59083	511	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.39576	5.773295	6.15083	9.86331e-6	1.52443e-9	5.39872e-4	1.74447e-7
chr10	47538768	47538866	6123207	0	-	0.346939	(0.32,0.36]	chr10	548564	5	EXON_LNCRNA	EXON_LNCRNA	BMS1P2	ENSG00000251079.6	ENST00000532854.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	17	2	5.39576	5.773295	6.15083	9.86331e-6	1.52443e-9	5.39872e-4	1.74447e-7
chr7	133007729	133007829	4857594	0	-	0.35	(0.32,0.36]	chr7	434859	321	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.39576	5.773295	6.15083	9.86331e-6	1.52443e-9	5.39872e-4	1.74447e-7
chr1	155720816	155720916	307231	0	+	0.47	(0.459,0.49]	chr1	33731	33	INTRON	INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000608852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	5.73824	5.772705	5.80717	2.1921e-8	1.22616e-8	2.0899e-6	1.22232e-6
chr5	59244683	59244783	3474689	0	-	0.41	(0.392,0.424]	chr5	319234	280	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	5.59633	5.771100000000001	5.94587	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	85628994	85629094	4120076	0	-	0.47	(0.459,0.49]	chr6	375513	45	INTRON	INTRON	SYNCRIP	ENSG00000135316.19	ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	116	2	5.69659	5.769225	5.84186	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	146272472	146272572	3349708	0	+	0.5	(0.49,0.526]	chr5	307555	4	INTRON	INTRON	RBM27	ENSG00000091009.8	ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	5.35492	5.76816	6.1814	1.0002e-6	2.69895e-11	7.00342e-5	3.91566e-9
chr1	179216846	179216946	813335	0	-	0.49	(0.459,0.49]	chr1	90525	739	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	5.61516	5.7679100000000005	5.92066	9.49302e-8	2.70029e-9	8.06088e-6	2.98805e-7
chr19	12677796	12677896	9442185	0	-	0.48	(0.459,0.49]	chr19	926819	4	SS3_PROX	SS3_PROX:INTRON	DHPS	ENSG00000095059.17	ENST00000210060.12:ENST00000598246.5:ENST00000351660.9:ENST00000600864.5:ENST00000601639.5:ENST00000594424.5:ENST00000601537.5:ENST00000595844.5:ENST00000593400.5:ENST00000596847.5:ENST00000595912.5:ENST00000600451.5:ENST00000597152.5:ENST00000598850.5:ENST00000596162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	5.61516	5.7679100000000005	5.92066	9.49302e-8	2.70029e-9	8.06088e-6	2.98805e-7
chr20	25626722	25626821	9621122	0	+	0.484848	(0.459,0.49]	chr20	949435	19	INTRON	INTRON	ZNF337-AS1	ENSG00000213742.7	ENST00000414393.5:ENST00000439498.5:ENST00000455791.5:ENST00000428254.6:ENST00000420803.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	5.68398	5.767805	5.85163	5.57196e-8	5.06515e-9	4.89622e-6	5.39084e-7
chr1	215610145	215610243	431297	0	+	0.357143	(0.32,0.36]	chr1	46411	16	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000452413.1	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	5.73254	5.765335	5.79813	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	100137203	100137303	7260079	0	-	0.45	(0.424,0.459]	chr12	668502	81	INTRON	INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000356828.7:ENST00000547428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	4.63564	5.764755	6.89387	1.40003e-10	1e-12	1.85644e-8	1.72912e-10
chr1	220561079	220561179	434300	0	+	0.47	(0.459,0.49]	chr1	46700	94	INTRON	INTRON	MARK1	ENSG00000116141.17	ENST00000366917.6:ENST00000402574.5:ENST00000611084.4:ENST00000485104.2:ENST00000366918.8:ENST00000677505.1:ENST00000677041.1:ENST00000678353.1:ENST00000677173.1:ENST00000678922.1:ENST00000676500.1:ENST00000679033.1:ENST00000678435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	5.26449	5.7642050000000005	6.26392	2.71516e-12	1e-12	4.4884e-10	1.72912e-10
chr19	43971856	43971955	9356009	0	+	0.373737	(0.36,0.392]	chr19	909825	34	INTRON	INTRON	ZNF155	ENSG00000204920.11	ENST00000590411.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	5.72273	5.763475	5.80422	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	42239169	42239269	8141281	0	-	0.51	(0.49,0.526]	chr15	753825	1	SS5_PROX	SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	5.72527	5.762875	5.80048	1.60521e-8	8.0778e-9	1.5647e-6	8.33659e-7
chr6	106612709	106612809	4150459	0	-	0.5	(0.49,0.526]	chr6	378129	94	INTRON	INTRON	RTN4IP1	ENSG00000130347.13	ENST00000369063.8:ENST00000539449.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.72527	5.762875	5.80048	1.60521e-8	8.0778e-9	1.5647e-6	8.33659e-7
chr7	139361519	139361619	4567674	0	+	0.32	[0,0.32]	chr7	410439	8	INTRON	INTRON	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	5.10715	5.761965	6.41678	7.53496e-5	7.3754e-11	0.00322158	1.00949e-8
chr13	52655365	52655463	7388449	0	+	0.306122	[0,0.32]	chr13	682701	19	INTRON	INTRON	SUGT1	ENSG00000165416.15	ENST00000483074.1:ENST00000310528.9:ENST00000343788.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.1772	5.761375	6.34555	5.87341e-5	1.33932e-10	0.00262682	1.78706e-8
chr14	32081175	32081274	7584283	0	+	0.282828	[0,0.32]	chr14	698920	25	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000555814.1:ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000556191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.1772	5.761375	6.34555	5.87341e-5	1.33932e-10	0.00262682	1.78706e-8
chr10	67929039	67929138	6149995	0	-	0.252525	[0,0.32]	chr10	550162	35	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.36319	5.760155	6.15712	1.13263e-5	3.56277e-9	6.25152e-4	3.88104e-7
chr19	6210380	6210478	9421025	0	-	0.27551	[0,0.32]	chr19	922254	1	UTR3	UTR3:EXON_MRNA	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.43357	5.759815	6.08606	8.40147e-6	5.85315e-9	4.71048e-4	6.18098e-7
chr19	37768407	37768507	9491588	0	-	0.44	(0.424,0.459]	chr19	934077	89	INTRON	INTRON	ZNF573	ENSG00000189144.15	ENST00000589632.5:ENST00000392138.5:ENST00000536220.7:ENST00000586155.5:ENST00000489148.5:ENST00000585724.5:ENST00000378445.8:ENST00000591516.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.45551	5.757020000000001	6.05853	1.50668e-6	7.70458e-10	9.96778e-5	9.22745e-8
chr12	53228571	53228667	7168943	0	-	0.510417	(0.49,0.526]	chr12	660093	5	INTRON	INTRON	RARG	ENSG00000172819.17	ENST00000394426.5:ENST00000425354.7:ENST00000543762.5:ENST00000546717.1:ENST00000551158.5:ENST00000550362.5:ENST00000550721.5:ENST00000550350.5:ENST00000551501.5:ENST00000546377.1:ENST00000549859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	5.40347	5.754670000000001	6.10587	6.5597e-11	1e-12	9.0398e-9	1.72912e-10
chr6	161225143	161225242	4249629	0	-	0.494949	(0.49,0.526]	chr6	386532	584	INTRON	INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	5.40347	5.754670000000001	6.10587	6.5597e-11	1e-12	9.0398e-9	1.72912e-10
chr11	10160861	10160961	6561104	0	-	0.47	(0.459,0.49]	chr11	596538	1164	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	5.19504	5.7546	6.31416	2.1191e-11	3.08209e-12	3.10804e-9	5.03634e-10
chr3	11287359	11287457	1764570	0	+	0.571429	(0.57,0.629]	chr3	181473	46	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000451513.5:ENST00000451830.5:ENST00000460444.5:ENST00000470474.1:ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000444619.5:ENST00000418682.5:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000419112.5:ENST00000469654.2:ENST00000423116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	4.32393	5.754025	7.18412	6.20448e-10	1e-12	7.52274e-8	1.73382e-10
chr7	129617709	129617809	4544197	0	+	0.45	(0.424,0.459]	chr7	408824	55	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	5.20165	5.753705	6.30576	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	65752986	65753085	5183483	0	-	0.292929	[0,0.32]	chr8	464532	48	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000379419.8:ENST00000396642.7:ENST00000518667.1:ENST00000519231.5:ENST00000523253.1:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	5.41615	5.753325	6.0905	1.29208e-10	1e-12	1.69913e-8	1.73382e-10
chr1	32380320	32380418	561850	0	-	0.489796	(0.459,0.49]	chr1	63081	11	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	5.4806	5.75324	6.02588	4.11395e-7	5.95023e-10	3.09732e-5	7.22535e-8
chr7	157251962	157252061	4598888	0	+	0.484848	(0.459,0.49]	chr7	414081	30	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	5.4806	5.75324	6.02588	4.11395e-7	5.95023e-10	3.09732e-5	7.22535e-8
chr7	149906855	149906955	4886203	0	-	0.49	(0.459,0.49]	chr7	437339	141	INTRON	INTRON	ENSG00000224016	ENSG00000224016.2	ENST00000297369.10	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	24	2	5.54928	5.75302	5.95676	2.53394e-7	1.17119e-9	1.97194e-5	1.35849e-7
chr7	92271602	92271702	4470854	0	+	0.33	(0.32,0.36]	chr7	401521	247	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	7	83	2	5.73617	5.750985	5.7658	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	29054514	29054613	92921	0	+	0.323232	(0.32,0.36]	chr1	10099	1	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	5.69899	5.7506	5.80221	3.81705e-7	2.13657e-7	2.90385e-5	1.69216e-5
chr14	68108435	68108535	7671507	0	+	0.35	(0.32,0.36]	chr14	705768	384	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	5.69899	5.7506	5.80221	3.81705e-7	2.13657e-7	2.90385e-5	1.69216e-5
chr3	45461678	45461778	1857783	0	+	0.36	(0.32,0.36]	chr3	188002	24	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.69899	5.7506	5.80221	3.81705e-7	2.13657e-7	2.90385e-5	1.69216e-5
chr10	167011	167111	5772807	0	+	0.38	(0.36,0.392]	chr10	519813	311	INTRON	INTRON	ZMYND11	ENSG00000015171.20	ENST00000397962.8:ENST00000439456.5:ENST00000309776.8:ENST00000397959.7:ENST00000509513.6:ENST00000381591.5:ENST00000381604.9:ENST00000602682.6:ENST00000381607.8:ENST00000403354.5:ENST00000627286.2:ENST00000402736.5:ENST00000397955.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.2225	5.74946	6.27642	2.06042e-5	2.38946e-10	0.00103061	3.06702e-8
chr14	71628628	71628728	7688617	0	+	0.37	(0.36,0.392]	chr14	706625	40	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5:ENST00000555066.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.2225	5.74946	6.27642	2.06042e-5	2.38946e-10	0.00103061	3.06702e-8
chr17	62028045	62028144	8980018	0	-	0.363636	(0.36,0.392]	chr17	865106	165	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000583958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.29492	5.748985	6.20305	1.51392e-5	4.41027e-10	7.85619e-4	5.4191e-8
chr3	123936153	123936253	2415283	0	-	0.3	[0,0.32]	chr3	231536	20	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5:ENST00000485949.5:ENST00000471054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	5.41088	5.748469999999999	6.08606	5.85315e-9	1e-12	6.18098e-7	1.72912e-10
chr1	161108964	161109064	788579	0	-	0.36	(0.32,0.36]	chr1	88248	62	INTRON	INTRON	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	5.48012	5.74774	6.01536	9.59726e-9	2.91207e-11	9.74486e-7	4.19646e-9
chr1	206237034	206237134	411800	0	+	0.37	(0.36,0.392]	chr1	44438	218	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.62785	5.7477149999999995	5.86758	5.69775e-7	5.98276e-8	4.16055e-5	5.2159e-6
chr16	47359391	47359491	8550890	0	-	0.37	(0.36,0.392]	chr16	805080	452	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.62785	5.7477149999999995	5.86758	5.69775e-7	5.98276e-8	4.16055e-5	5.2159e-6
chr20	58405124	58405223	9681863	0	+	0.373737	(0.36,0.392]	chr20	956344	144	INTRON	INTRON	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000395802.7:ENST00000520497.1:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.62785	5.7477149999999995	5.86758	5.69775e-7	5.98276e-8	4.16055e-5	5.2159e-6
chr9	133419415	133419515	5521062	0	+	0.39	(0.36,0.392]	chr9	495946	44	INTRON	INTRON	ADAMTS13	ENSG00000160323.19	ENST00000485925.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	5.62785	5.7477149999999995	5.86758	5.69775e-7	5.98276e-8	4.16055e-5	5.2159e-6
chr6	125024152	125024252	3868269	0	+	0.38	(0.36,0.392]	chr6	353831	145	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2:ENST00000368414.6:ENST00000359704.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.70074	5.747635	5.79453	3.77982e-7	9.49031e-8	2.84782e-5	8.06088e-6
chr19	52571086	52571186	9382573	0	+	0.37	(0.36,0.392]	chr19	915027	2	SS5_PROX	SS5_PROX:INTRON	ZNF701	ENSG00000167562.14	ENST00000478039.1:ENST00000596514.5:ENST00000391785.8:ENST00000301093.6:ENST00000540331.1:ENST00000593941.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	5.32217	5.747035	6.1719	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	61101474	61101574	165116	0	+	0.32	[0,0.32]	chr1	19198	129	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	52	2	5.70673	5.746885000000001	5.78704	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	7403844	7403899	8861021	0	-	0.545455	(0.526,0.57]	chr17	847623	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM256	ENSG00000205544.4	ENST00000302422.4:ENST00000576017.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	5.68416	5.744275	5.80439	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43245859	43245959	8937920	0	-	0.67	(0.629,1]	chr17	859071	157	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	23	707	2	5.58721	5.74411	5.90101	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	76073408	76073506	7212659	0	-	0.418367	(0.392,0.424]	chr12	665412	41	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	5.10803	5.742785	6.37754	1.91154e-11	1e-12	2.81903e-9	1.73382e-10
chr1	219208023	219208123	433305	0	+	0.33	(0.32,0.36]	chr1	46538	89	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	4.88688	5.74266	6.59844	9.03252e-8	2.46503e-12	7.79413e-6	4.05946e-10
chr10	46801058	46801157	5844344	0	+	0.353535	(0.32,0.36]	chr10	525481	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000690946.1:ENST00000688259.1:ENST00000685496.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	24	2	4.88688	5.74266	6.59844	9.03252e-8	2.46503e-12	7.79413e-6	4.05946e-10
chr3	111870071	111870171	1954192	0	+	0.41	(0.392,0.424]	chr3	196633	98	INTRON	INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000478922.1:ENST00000477695.5:ENST00000393925.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.39479	5.74251	6.09023	4.26975e-6	1.13607e-9	2.57151e-4	1.32549e-7
chr3	195337875	195337975	2525984	0	-	0.67	(0.629,1]	chr3	241937	5	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000439758.3:ENST00000423531.3:ENST00000480906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	5.09717	5.739990000000001	6.38281	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	233623187	233623286	460218	0	+	0.333333	(0.32,0.36]	chr1	49615	83	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.51031	5.7397849999999995	5.96926	2.41138e-6	3.15048e-8	1.53938e-4	2.93512e-6
chr14	77507792	77507892	7873253	0	-	0.35	(0.32,0.36]	chr14	726014	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000686627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	5.51031	5.7397849999999995	5.96926	2.41138e-6	3.15048e-8	1.53938e-4	2.93512e-6
chr10	73384689	73384789	6164472	0	-	0.35	(0.32,0.36]	chr10	551938	6	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	5.61325	5.73954	5.86583	1.45077e-6	6.04906e-8	9.68953e-5	5.40424e-6
chr12	122530890	122530989	7038928	0	+	0.323232	(0.32,0.36]	chr12	645189	3	INTRON	INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.61325	5.73954	5.86583	1.45077e-6	6.04906e-8	9.68953e-5	5.40424e-6
chr2	240012189	240012288	1734378	0	-	0.323232	(0.32,0.36]	chr2	178126	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	5.61325	5.73954	5.86583	1.45077e-6	6.04906e-8	9.68953e-5	5.40424e-6
chrX	45065010	45065109	10119573	0	+	0.363636	(0.36,0.392]	chrX	1008892	8	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	68	2	5.35009	5.738155	6.12622	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	102165465	102165565	6479260	0	+	0.49	(0.459,0.49]	chr11	585360	25	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	5.58298	5.736965	5.89095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	61777493	61777592	1903206	0	+	0.434343	(0.424,0.459]	chr3	193543	62	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	5.52765	5.73625	5.94485	3.84993e-9	1e-12	4.17496e-7	1.72912e-10
chr1	21151380	21151480	537510	0	-	0.5	(0.49,0.526]	chr1	59083	384	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	5.20683	5.734795	6.26276	3.9703e-6	6.58018e-12	2.39291e-4	1.03239e-9
chr1	175005515	175005606	358504	0	+	0.43956	(0.424,0.459]	chr1	39044	3	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	129	2	5.16361	5.734645	6.30568	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	133759798	133759898	4555851	0	+	0.51	(0.49,0.526]	chr7	409421	1293	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	5.13094	5.734064999999999	6.33719	2.38916e-11	1e-12	3.48506e-9	1.73382e-10
chr15	41294307	41294407	7949908	0	+	0.46	(0.459,0.49]	chr15	734638	35	INTRON	INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	5.63923	5.732760000000001	5.82629	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	47078509	47078609	6392625	0	+	0.45	(0.424,0.459]	chr11	572776	256	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	249	2	5.32883	5.732559999999999	6.13629	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43144035	43144131	8719602	0	+	0.541667	(0.526,0.57]	chr17	827856	11	INTRON	INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	5.48168	5.73169	5.9817	2.6732e-7	5.835e-10	2.09843e-5	7.10688e-8
chr6	32960873	32960973	4039733	0	-	0.43	(0.424,0.459]	chr6	367624	79	INTRON	INTRON	HLA-DMA	ENSG00000204257.15	ENST00000464392.1:ENST00000422832.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	4.77691	5.730595	6.68428	4.08028e-8	1e-12	3.72797e-6	1.72912e-10
chr14	68963034	68963133	7858544	0	-	0.616162	(0.57,0.629]	chr14	723760	8	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	5.61643	5.729205	5.84198	4.34385e-8	1.89943e-9	3.91431e-6	2.14969e-7
chr18	23471555	23471653	9080126	0	+	0.44898	(0.424,0.459]	chr18	877266	37	INTRON	INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000581302.5:ENST00000577501.5:ENST00000584130.1:ENST00000581339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	4.64875	5.728695	6.80864	2.48943e-10	1e-12	3.17004e-8	1.73382e-10
chr2	222864092	222864189	1319333	0	+	0.443299	(0.424,0.459]	chr2	136495	20	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.6865	5.728675	5.77085	9.64047e-8	5.32819e-8	8.13052e-6	4.72329e-6
chr15	58735278	58735378	8192564	0	-	0.39	(0.36,0.392]	chr15	759568	172	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.43936	5.728235	6.01711	3.42448e-6	9.48035e-9	2.10826e-4	9.6816e-7
chr17	75347394	75347494	9010019	0	-	0.49	(0.459,0.49]	chr17	869137	142	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.33218	5.7280549999999995	6.12393	1.78412e-6	1.31318e-10	1.1709e-4	1.71854e-8
chr15	64076235	64076334	8211727	0	-	0.353535	(0.32,0.36]	chr15	761497	3	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	5.46439	5.727304999999999	5.99022	1.3437e-11	1e-12	2.04865e-9	1.72912e-10
chr19	4020435	4020535	9268929	0	+	0.51	(0.49,0.526]	chr19	893898	13	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000596144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	5.35492	5.7250499999999995	6.09518	1.0002e-6	1.11716e-10	7.00342e-5	1.47877e-8
chr5	132354222	132354321	3597323	0	-	0.383838	(0.36,0.392]	chr5	326592	12	INTRON	INTRON	MIR3936HG	ENSG00000233006.8	ENST00000621103.4:ENST00000669845.1:ENST00000616965.1:ENST00000649993.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	5.72273	5.7248	5.72687	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	41730246	41730345	7952868	0	+	0.525253	(0.49,0.526]	chr15	735030	5	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	5.42971	5.72471	6.01971	5.89334e-7	2.59274e-10	4.28084e-5	3.28602e-8
chr17	50862979	50863079	8964049	0	-	0.37	(0.36,0.392]	chr17	862727	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TOB1	ENSG00000141232.5	ENST00000499247.3:ENST00000268957.3	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	5.47714	5.723750000000001	5.97036	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr2	183033492	183033592	1639084	0	-	0.38	(0.36,0.392]	chr2	168804	81	INTRON	INTRON	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	5.36786	5.72358	6.0793	2.64141e-9	7.7117e-11	2.93923e-7	1.05061e-8
chr6	57104866	57104965	3797747	0	+	0.363636	(0.36,0.392]	chr6	348499	29	UTR3	UTR3:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370708.8:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	5.36786	5.72358	6.0793	2.64141e-9	7.7117e-11	2.93923e-7	1.05061e-8
chr11	12762678	12762778	6325783	0	+	0.4	(0.392,0.424]	chr11	567852	868	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	5.17459	5.723275	6.27196	1.10884e-10	1e-12	1.47443e-8	1.73382e-10
chr18	12994031	12994131	9065021	0	+	0.4	(0.392,0.424]	chr18	876075	22	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	5.43744	5.722135	6.00683	3.2826e-12	1e-12	5.32874e-10	1.72912e-10
chr16	24189409	24189507	8355306	0	+	0.44898	(0.424,0.459]	chr16	778976	35	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.5376	5.721775	5.90595	4.83052e-7	1.00338e-8	3.58077e-5	1.01215e-6
chr3	125359016	125359116	2419250	0	-	0.45	(0.424,0.459]	chr3	231886	13	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.62178	5.721615	5.82145	2.83203e-7	1.92567e-8	2.17914e-5	1.85307e-6
chr4	141106026	141106126	3025018	0	-	0.34	(0.32,0.36]	chr4	282513	519	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	5.25033	5.720409999999999	6.19049	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	195238209	195238309	2524990	0	-	0.53	(0.526,0.57]	chr3	241797	110	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	5.19933	5.7201249999999995	6.24092	4.16513e-6	8.32645e-12	2.48371e-4	1.29188e-9
chr11	62839669	62839768	6617950	0	-	0.383838	(0.36,0.392]	chr11	604364	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR74	ENSG00000133316.16	ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000538098.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.73928	5.71953	6.69978	5.12952e-7	1e-12	3.78931e-5	1.73382e-10
chr4	109039168	109039268	2990511	0	-	0.48	(0.459,0.49]	chr4	280097	284	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	164	2	5.18872	5.71885	6.24898	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	200652952	200653051	832946	0	-	0.535354	(0.526,0.57]	chr1	92355	19	INTRON	INTRON	DDX59	ENSG00000118197.14	ENST00000447706.6:ENST00000331314.11:ENST00000429498.5:ENST00000433235.1:ENST00000453944.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	5.10514	5.717359999999999	6.32958	3.15845e-11	1.19194e-12	4.53933e-9	2.04402e-10
chr3	128502678	128502775	1986430	0	+	0.28866000000000003	[0,0.32]	chr3	199790	12	EXON_LNCRNA	EXON_LNCRNA	GATA2-AS1	ENSG00000244300.3	ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	7	73	2	5.29662	5.71504	6.13346	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	18249350	18249450	4016416	0	-	0.5	(0.49,0.526]	chr6	363495	3	SS5_PROX	SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1:ENST00000512145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	326	2	5.25086	5.71419	6.17752	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	197163633	197163733	2533961	0	-	0.41	(0.392,0.424]	chr3	243072	15	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.85654	5.71228	6.56802	1.84333e-4	1e-12	0.00688171	1.72912e-10
chr20	38523683	38523782	9649199	0	+	0.323232	(0.32,0.36]	chr20	952870	16	INTRON	INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2:ENST00000461423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	4.63488	5.71205	6.78922	2.94198e-9	1e-12	3.24824e-7	1.72912e-10
chr8	25244556	25244656	4950120	0	+	0.57	(0.526,0.57]	chr8	443323	4	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	5.03214	5.71158	6.39102	7.05169e-11	1e-12	9.69541e-9	1.72912e-10
chr10	5699447	5699517	5778576	0	+	0.3	[0,0.32]	chr10	520598	1	UTR5	UTR5:EXON_MRNA:INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	4.42103	5.7115	7.00197	1.77666e-7	1e-12	1.4379e-5	1.73382e-10
chr11	62642566	62642665	6616454	0	-	0.474747	(0.459,0.49]	chr11	603909	21	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	5.61516	5.711165	5.80717	9.49302e-8	1.22616e-8	8.06088e-6	1.22232e-6
chr2	44439590	44439690	1008123	0	+	0.49	(0.459,0.49]	chr2	109397	386	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	5.61516	5.711165	5.80717	9.49302e-8	1.22616e-8	8.06088e-6	1.22232e-6
chr17	75967845	75967945	9012814	0	-	0.46	(0.459,0.49]	chr17	869905	71	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	5.68398	5.71111	5.73824	5.57196e-8	2.1921e-8	4.89622e-6	2.0899e-6
chr20	49281322	49281393	9669216	0	+	0.464789	(0.459,0.49]	chr20	955624	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	5.68398	5.71111	5.73824	5.57196e-8	2.1921e-8	4.89622e-6	2.0899e-6
chr1	21080855	21080954	536801	0	-	0.222222	[0,0.32]	chr1	59072	155	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	5.58056	5.7104	5.84024	1.7046e-6	1.72569e-7	1.13343e-4	1.40017e-5
chr13	95757996	95758096	7414108	0	+	0.31	[0,0.32]	chr13	683782	2	SS5_PROX	SS5_PROX:INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.58056	5.7104	5.84024	1.7046e-6	1.72569e-7	1.13343e-4	1.40017e-5
chr8	56988135	56988234	5173181	0	-	0.292929	[0,0.32]	chr8	463859	76	INTRON	INTRON	BPNT2	ENSG00000104331.9	ENST00000262644.9:ENST00000517461.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.58056	5.7104	5.84024	1.7046e-6	1.72569e-7	1.13343e-4	1.40017e-5
chr12	43981733	43981833	6884204	0	+	0.32	[0,0.32]	chr12	628131	370	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.65119	5.710315	5.76944	1.20332e-6	2.56854e-7	8.2089e-5	2.02856e-5
chr3	46944554	46944654	2260312	0	-	0.55	(0.526,0.57]	chr3	218308	31	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	5.40811	5.71012	6.01213	6.86579e-7	2.82174e-10	4.92496e-5	3.5327e-8
chr12	20577767	20577867	6844145	0	+	0.39	(0.36,0.392]	chr12	625053	52	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	5.62006	5.708085	5.79611	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	28927463	28927563	8900976	0	-	0.4	(0.392,0.424]	chr17	852922	4	SS3_PROX	SS3_PROX:INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000578900.6:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.51581	5.707425000000001	5.89904	1.07176e-6	2.16736e-8	7.36955e-5	2.09062e-6
chr1	206309854	206309953	412531	0	+	0.393939	(0.392,0.424]	chr1	44452	60	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.58314	5.70728	5.83142	7.33041e-7	3.48252e-8	5.19799e-5	3.23132e-6
chr11	31446290	31446390	6586833	0	-	0.47	(0.459,0.49]	chr11	599053	88	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000531331.1:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	5.53686	5.706695	5.87653	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	131079471	131079570	4848917	0	-	0.464646	(0.459,0.49]	chr7	434495	25	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	44	2	4.61862	5.706424999999999	6.79423	2.51524e-11	1e-12	3.66433e-9	1.72912e-10
chr11	14353117	14353216	6570558	0	-	0.323232	(0.32,0.36]	chr11	597173	112	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000532950.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.29318	5.70607	6.11896	1.5251e-5	4.65151e-9	8.01855e-4	4.96782e-7
chr8	101189366	101189466	5234265	0	-	0.36	(0.32,0.36]	chr8	468361	106	INTRON	INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.29318	5.70607	6.11896	1.5251e-5	4.65151e-9	8.01855e-4	4.96782e-7
chr17	47152821	47152917	8952765	0	-	0.354167	(0.32,0.36]	chr17	861166	5	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2:ENST00000576484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	5.39576	5.70556	6.01536	9.86331e-6	9.59726e-9	5.39872e-4	9.74486e-7
chr4	106318304	106318403	2705189	0	+	0.353535	(0.32,0.36]	chr4	257376	19	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	AIMP1	ENSG00000164022.18	ENST00000510207.5:ENST00000358008.7:ENST00000682186.1:ENST00000684504.1:ENST00000442366.6:ENST00000672341.1:ENST00000394701.6:ENST00000672337.1:ENST00000672003.1:ENST00000671868.1:ENST00000673123.1:ENST00000672911.1:ENST00000672328.1:ENST00000672285.1:ENST00000671960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	5.39576	5.70556	6.01536	9.86331e-6	9.59726e-9	5.39872e-4	9.74486e-7
chr5	110750834	110750933	3274227	0	+	0.353535	(0.32,0.36]	chr5	301467	22	INTRON	INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	4.9312	5.70193	6.47266	1.74992e-11	1e-12	2.60849e-9	1.72912e-10
chr1	12585242	12585342	520674	0	-	0.47	(0.459,0.49]	chr1	56279	42	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	225	2	5.32295	5.701779999999999	6.08061	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	5893099	5893198	5779294	0	+	0.484848	(0.459,0.49]	chr10	520754	16	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000470089.5:ENST00000462507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	5.4806	5.70063	5.92066	4.11395e-7	2.70029e-9	3.09732e-5	2.98805e-7
chr22	45700971	45701065	9962200	0	+	0.393617	(0.392,0.424]	chr22	991641	2	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000640901.1:ENST00000498009.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	5.59518	5.70059	5.806	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	7154399	7154497	6815377	0	+	0.438776	(0.424,0.459]	chr12	622947	30	INTRON	INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	5.37155	5.700515	6.02948	2.42251e-6	1.8912e-9	1.53938e-4	2.1436e-7
chr22	28422693	28422793	10005530	0	-	0.43	(0.424,0.459]	chr22	996538	1157	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	5.45551	5.70018	5.94485	1.50668e-6	3.84993e-9	9.96778e-5	4.17496e-7
chrX	153976946	153977044	10243678	0	+	0.27551	[0,0.32]	chrX	1020463	37	INTRON	INTRON	TMEM187	ENSG00000177854.8	ENST00000369982.5:ENST00000425274.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.1772	5.69942	6.22164	5.87341e-5	8.84932e-10	0.00262682	1.05098e-7
chr3	78796900	78797000	2350444	0	-	0.39	(0.36,0.392]	chr3	227137	496	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	5.01983	5.69848	6.37713	3.09874e-12	1e-12	5.0565e-10	1.73382e-10
chr18	48947983	48948083	9223527	0	-	0.48	(0.459,0.49]	chr18	888317	2	SS5_PROX	SS5_PROX:INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000591805.5:ENST00000589634.1:ENST00000586093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	5.41496	5.697735	5.98051	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	77667591	77667691	6658758	0	-	0.35	(0.32,0.36]	chr11	610580	1	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000480887.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	5.37435	5.6948550000000004	6.01536	9.59726e-9	1.8226e-10	9.74486e-7	2.36584e-8
chr5	77752409	77752508	3507364	0	-	0.50505	(0.49,0.526]	chr5	321228	372	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	8	155	2	5.50009	5.694535	5.88898	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	150385312	150385412	294043	0	+	0.52	(0.49,0.526]	chr1	31080	200	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	5.20683	5.694115	6.1814	3.9703e-6	2.69895e-11	2.39291e-4	3.91566e-9
chr12	28250067	28250167	6857267	0	+	0.43	(0.424,0.459]	chr12	626376	235	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	4.42731	5.69239	6.95747	9.84246e-12	1e-12	1.51925e-9	1.72912e-10
chr4	185314684	185314783	2809065	0	+	0.494949	(0.49,0.526]	chr4	265513	35	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000512853.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	5.26175	5.69188	6.12201	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	80188642	80188742	6183274	0	-	0.45	(0.424,0.459]	chr10	553769	68	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	5.35404	5.69176	6.02948	1.8912e-9	4.031e-12	2.1436e-7	6.4979e-10
chr19	20620926	20621025	9464797	0	-	0.555556	(0.526,0.57]	chr19	931341	11	UTR3	UTR3:EXON_MRNA	ZNF626	ENSG00000188171.17	ENST00000601440.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.60452	5.69164	5.77876	6.77869e-8	9.84906e-9	5.95616e-6	1.00136e-6
chr11	62813865	62813965	6617663	0	-	0.41	(0.392,0.424]	chr11	604274	58	INTRON	INTRON	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	5.11125	5.691605	6.27196	3.31137e-5	1.10884e-10	0.00159224	1.47443e-8
chr14	61743720	61743816	7647227	0	+	0.25	[0,0.32]	chr14	703759	22	INTRON	INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	5.22411	5.690614999999999	6.15712	3.56277e-9	1.49849e-9	3.88104e-7	1.73006e-7
chr2	32085599	32085698	977049	0	+	0.353535	(0.32,0.36]	chr2	106627	73	INTRON	INTRON	SPAST	ENSG00000021574.13	ENST00000315285.9:ENST00000646571.1:ENST00000621856.2:ENST00000642455.1:ENST00000642281.1:ENST00000644408.1:ENST00000642751.1:ENST00000642999.1:ENST00000644954.1:ENST00000645400.1:ENST00000646082.1:ENST00000645671.1:ENST00000647007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	4.88688	5.689775	6.49267	9.03252e-8	1.53492e-11	7.79413e-6	2.28984e-9
chr18	62529480	62529580	9136053	0	+	0.39	(0.36,0.392]	chr18	881458	21	INTRON	INTRON	ZCCHC2	ENSG00000141664.10	ENST00000269499.10:ENST00000585873.5:ENST00000591632.5:ENST00000621048.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.2225	5.68754	6.15258	2.06042e-5	1.50388e-9	0.00103061	1.73555e-7
chrX	132458789	132458889	10434854	0	-	0.44	(0.424,0.459]	chrX	1034956	181	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	5.10007	5.6870449999999995	6.27402	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	25780148	25780248	1404290	0	-	0.25	[0,0.32]	chr2	145611	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.43357	5.684995	5.93642	8.40147e-6	3.87502e-8	4.71048e-4	3.55241e-6
chr16	21974674	21974773	8347093	0	+	0.353535	(0.32,0.36]	chr16	778166	3	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	4.68389	5.684464999999999	6.68504	1.67087e-6	1e-12	1.09706e-4	1.73382e-10
chr17	30120869	30120969	8688897	0	+	0.35	(0.32,0.36]	chr17	822548	23	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	5.17692	5.683705	6.19049	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	47625761	47625861	9370029	0	+	0.62	(0.57,0.629]	chr19	912024	162	INTRON	INTRON	BICRA	ENSG00000063169.12	ENST00000396720.7:ENST00000594866.3	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.54822	5.683585	5.81895	8.11421e-8	3.22847e-9	7.06304e-6	3.54085e-7
chr9	124626207	124626307	5733188	0	-	0.6	(0.57,0.629]	chr9	513813	305	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.61643	5.68349	5.75055	4.34385e-8	6.63557e-9	3.91431e-6	6.91177e-7
chr21	32512813	32512913	9802519	0	+	0.55	(0.526,0.57]	chr21	971392	84	INTRON	INTRON	EVA1C	ENSG00000166979.13	ENST00000435323.5:ENST00000437338.5:ENST00000457807.5:ENST00000401402.7:ENST00000382699.7:ENST00000300255.7:ENST00000464037.5:ENST00000496615.5:ENST00000485488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	5.48168	5.682735	5.88379	2.6732e-7	2.39626e-9	2.09843e-5	2.67554e-7
chr3	27435393	27435492	2219808	0	-	0.424242	(0.392,0.424]	chr3	215148	9	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000295736.9:ENST00000428386.5:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428179.1:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	5.32767	5.681005000000001	6.03434	5.95442e-6	3.73254e-9	3.4453e-4	4.03186e-7
chr3	193638265	193638365	2144872	0	+	0.4	(0.392,0.424]	chr3	210131	2	SS5_PROX	SS5_PROX:INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000497189.5:ENST00000475899.1:ENST00000646544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	5.32767	5.681005000000001	6.03434	5.95442e-6	3.73254e-9	3.4453e-4	4.03186e-7
chr5	14597877	14597976	3125843	0	+	0.424242	(0.392,0.424]	chr5	289528	156	INTRON	INTRON	OTULINL	ENSG00000145569.6	ENST00000274217.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.39479	5.680705	5.96662	4.26975e-6	6.28695e-9	2.57151e-4	6.5739e-7
chr5	37109469	37109569	3441613	0	-	0.4	(0.392,0.424]	chr5	316506	6	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000676160.1:ENST00000509849.5:ENST00000514429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	5.10995	5.68015	6.25035	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	1372584	1372681	9261488	0	+	0.505155	(0.49,0.526]	chr19	892329	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000415183.7:ENST00000587460.6:ENST00000627377.1:ENST00000586067.1:ENST00000591627.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	5.35492	5.679195	6.00347	1.0002e-6	4.64321e-10	7.00342e-5	5.72685e-8
chr20	20019017	20019114	9615686	0	+	0.515464	(0.49,0.526]	chr20	948861	1	INTRON	INTRON	NAA20	ENSG00000173418.12	ENST00000310450.8:ENST00000484480.5:ENST00000463154.5:ENST00000480550.1:ENST00000334982.9:ENST00000398602.2:ENST00000481837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	5.42971	5.6789000000000005	5.92809	5.89334e-7	1.02462e-9	4.28084e-5	1.20726e-7
chr5	21481376	21481476	3134322	0	+	0.5	(0.49,0.526]	chr5	289709	68	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	25	2	5.42971	5.6789000000000005	5.92809	5.89334e-7	1.02462e-9	4.28084e-5	1.20726e-7
chr14	35739829	35739926	7807526	0	-	0.391753	(0.36,0.392]	chr14	718863	8	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5:ENST00000557069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.96718	5.678825	6.39047	1.24104e-4	3.80762e-11	0.0049353	5.38572e-9
chr10	12729667	12729767	5795298	0	+	0.48	(0.459,0.49]	chr10	521735	625	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.40069	5.678725	5.95676	1.15324e-6	1.17119e-9	7.95154e-5	1.35849e-7
chrX	24182466	24182566	10104713	0	+	0.39	(0.36,0.392]	chrX	1007471	23	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	5.55851	5.67731	5.79611	2.22977e-12	1e-12	3.69473e-10	1.73382e-10
chr1	6809686	6809786	12137	0	+	0.44	(0.424,0.459]	chr1	1852	22	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	5.19035	5.677125	6.1639	1.67757e-10	1.54441e-10	2.18199e-8	2.03038e-8
chr3	188489100	188489199	2134362	0	+	0.333333	(0.32,0.36]	chr3	209647	40	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000420410.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000474472.5:ENST00000484468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	5.21704	5.676945	6.13685	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	77296994	77297093	8806097	0	+	0.383838	(0.36,0.392]	chr17	838928	17	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	5.55851	5.67652	5.79453	9.49031e-8	2.22977e-12	8.06088e-6	3.69473e-10
chr22	35271390	35271489	9936868	0	+	0.373737	(0.36,0.392]	chr22	987288	54	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	5.55851	5.67652	5.79453	9.49031e-8	2.22977e-12	8.06088e-6	3.69473e-10
chr13	112524970	112525068	7567414	0	-	0.5	(0.49,0.526]	chr13	696245	21	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	4.81591	5.6762	6.53649	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	9224190	9224290	9055924	0	+	0.25	[0,0.32]	chr18	875223	18	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000540578.6:ENST00000400020.7:ENST00000546007.6:ENST00000359158.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	4.96539	5.6747700000000005	6.38415	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	91877260	91877360	5658860	0	-	0.44	(0.424,0.459]	chr9	506482	1011	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	5.52765	5.67455	5.82145	1.92567e-8	1e-12	1.85307e-6	1.72912e-10
chr15	50342182	50342282	8164550	0	-	0.27	[0,0.32]	chr15	756951	150	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.81498	5.67297	6.53096	3.34826e-7	1.06284e-11	2.57546e-5	1.63406e-9
chr17	17745149	17745248	8664709	0	+	0.434343	(0.424,0.459]	chr17	819356	206	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	4.99595	5.6714649999999995	6.34698	1.88138e-9	1.28346e-11	2.13412e-7	1.9463e-9
chr10	73406406	73406505	6164700	0	-	0.393939	(0.392,0.424]	chr10	551975	52	INTRON	INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	5.13089	5.667479999999999	6.20407	1.3052e-9	2.05488e-10	1.52229e-7	2.64594e-8
chr3	183870555	183870654	2507300	0	-	0.484848	(0.459,0.49]	chr3	239962	21	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1:ENST00000469056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	5.4814	5.666515	5.85163	5.06515e-9	1e-12	5.39084e-7	1.72912e-10
chr4	41256910	41256976	2610145	0	+	0.636364	(0.629,1]	chr4	250011	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	5.39999	5.66646	5.93293	2.69914e-7	2.80251e-10	2.1149e-5	3.54906e-8
chr4	151486645	151486745	2759333	0	+	0.48	(0.459,0.49]	chr4	262025	36	INTRON	INTRON	FHIP1A	ENSG00000164142.16	ENST00000435205.6:ENST00000508198.5:ENST00000503146.5:ENST00000513086.5:ENST00000511501.5:ENST00000513962.5:ENST00000512597.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.73219	5.66628	6.60037	3.0068e-8	1e-12	2.8316e-6	1.73382e-10
chr18	23784357	23784457	9081565	0	+	0.46	(0.459,0.49]	chr18	877485	2	SS5_PROX	SS5_PROX:INTRON	LAMA3	ENSG00000053747.17	ENST00000313654.14:ENST00000585600.5:ENST00000399516.7	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	34	2	5.1143	5.665025	6.21575	4.9806e-11	2.91337e-11	6.98308e-9	4.19646e-9
chr12	44044817	44044917	6884835	0	+	0.43	(0.424,0.459]	chr12	628131	1001	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	5.18608	5.664664999999999	6.14325	3.56746e-10	8.58015e-11	4.46854e-8	1.16412e-8
chr20	9404180	9404273	9575468	0	+	0.537634	(0.526,0.57]	chr20	947479	7	INTRON	INTRON	PLCB4	ENSG00000101333.19	ENST00000378501.3:ENST00000378493.6:ENST00000685110.1:ENST00000687765.1:ENST00000688837.1:ENST00000686871.1:ENST00000685148.1:ENST00000414679.7:ENST00000688325.1:ENST00000693502.1:ENST00000693544.1:ENST00000693752.1:ENST00000687299.1:ENST00000685859.1:ENST00000686584.1:ENST00000689910.1:ENST00000685298.1:ENST00000378473.9:ENST00000690729.1:ENST00000691007.1:ENST00000686313.1:ENST00000684997.1:ENST00000687446.1:ENST00000686976.1:ENST00000685823.1:ENST00000686117.1:ENST00000685568.1:ENST00000692085.1:ENST00000690960.1:ENST00000693492.1:ENST00000689010.1:ENST00000686163.1:ENST00000693160.1:ENST00000691112.1:ENST00000686893.1:ENST00000685482.1:ENST00000686532.1:ENST00000685446.1:ENST00000686253.1:ENST00000692395.1:ENST00000693090.1:ENST00000693005.1:ENST00000685310.1:ENST00000688656.1:ENST00000278655.9:ENST00000492632.5:ENST00000689392.1:ENST00000464199.5:ENST00000473151.5:ENST00000482123.1:ENST00000687147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	5.40811	5.66431	5.92051	6.86579e-7	1.10942e-9	4.92496e-5	1.30307e-7
chr3	195943943	195944043	2528369	0	-	0.53	(0.526,0.57]	chr3	242233	194	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	25	2	5.40811	5.66431	5.92051	6.86579e-7	1.10942e-9	4.92496e-5	1.30307e-7
chr10	74285093	74285193	5896058	0	+	0.38	(0.36,0.392]	chr10	529750	417	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.62785	5.664294999999999	5.70074	5.69775e-7	3.77982e-7	4.16055e-5	2.84782e-5
chr14	49796828	49796872	7817981	0	-	0.363636	(0.36,0.392]	chr14	719688	1	INTRON	INTRON	NEMF	ENSG00000165525.18	ENST00000298310.10:ENST00000556691.5:ENST00000556074.5:ENST00000556925.5:ENST00000555970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	5.62785	5.664294999999999	5.70074	5.69775e-7	3.77982e-7	4.16055e-5	2.84782e-5
chr1	54386878	54386978	627499	0	-	0.57	(0.526,0.57]	chr1	69873	302	INTRON	INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	5.31418	5.663155	6.01213	2.82174e-10	1e-12	3.5327e-8	1.72912e-10
chr7	111272196	111272296	4816424	0	-	0.43	(0.424,0.459]	chr7	431926	3083	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	4.91426	5.65842	6.40258	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	43985497	43985596	1438285	0	-	0.464646	(0.459,0.49]	chr2	149222	27	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1:ENST00000682496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	4.85489	5.65775	6.46061	3.39545e-9	1e-12	3.71453e-7	1.72912e-10
chr5	127218176	127218275	3585315	0	-	0.464646	(0.459,0.49]	chr5	325613	26	INTRON	INTRON	ENSG00000283897	ENSG00000283897.2	ENST00000639283.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	4.85489	5.65775	6.46061	3.39545e-9	1e-12	3.71453e-7	1.72912e-10
chr4	41257415	41257511	2610152	0	+	0.760417	(0.629,1]	chr4	250015	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	4.92162	5.65684	6.39206	1.0897e-11	1e-12	1.67854e-9	1.72912e-10
chrX	109688421	109688520	10406112	0	-	0.343434	(0.32,0.36]	chrX	1032653	26	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	5.39671	5.656739999999999	5.91677	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	19963026	19963126	1389576	0	-	0.35	(0.32,0.36]	chr2	143985	3	INTRON	INTRON	WDR35	ENSG00000118965.16	ENST00000281405.9:ENST00000345530.8:ENST00000445063.5:ENST00000414212.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.51031	5.65626	5.80221	2.41138e-6	2.13657e-7	1.53938e-4	1.69216e-5
chr3	143041925	143042024	2036803	0	+	0.333333	(0.32,0.36]	chr3	203622	26	INTRON	INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.51031	5.65626	5.80221	2.41138e-6	2.13657e-7	1.53938e-4	1.69216e-5
chrX	136966644	136966744	10232741	0	+	0.34	(0.32,0.36]	chrX	1019131	28	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1:ENST00000426943.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	15	2	5.61325	5.65612	5.69899	1.45077e-6	3.81705e-7	9.68953e-5	2.90385e-5
chr3	184851900	184851999	2124399	0	+	0.373737	(0.36,0.392]	chr3	208897	15	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000452666.3:ENST00000465818.5:ENST00000469713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	5.36786	5.655895	5.94393	1.58245e-8	7.7117e-11	1.55285e-6	1.05061e-8
chr22	28356321	28356421	10004866	0	-	0.43	(0.424,0.459]	chr22	996538	493	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.5376	5.654225	5.77085	4.83052e-7	5.32819e-8	3.58077e-5	4.72329e-6
chr12	106885303	106885403	7012897	0	+	0.44	(0.424,0.459]	chr12	640955	50	INTRON	INTRON	RIC8B	ENSG00000111785.21	ENST00000392839.6:ENST00000355478.6:ENST00000392837.9:ENST00000549643.5:ENST00000462949.5:ENST00000470960.1:ENST00000546449.2:ENST00000551756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	5.62178	5.65414	5.6865	2.83203e-7	9.64047e-8	2.17914e-5	8.13052e-6
chr4	99906334	99906416	2965909	0	-	0.439024	(0.424,0.459]	chr4	278494	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000420137.5:ENST00000334223.6:ENST00000471101.5:ENST00000455208.5:ENST00000398991.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	5.62178	5.65414	5.6865	2.83203e-7	9.64047e-8	2.17914e-5	8.13052e-6
chr12	48690048	48690147	7158143	0	-	0.363636	(0.36,0.392]	chr12	657652	17	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.43936	5.65347	5.86758	3.42448e-6	5.98276e-8	2.10826e-4	5.2159e-6
chr20	49681690	49681790	9762588	0	-	0.39	(0.36,0.392]	chr20	967487	246	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.43936	5.65347	5.86758	3.42448e-6	5.98276e-8	2.10826e-4	5.2159e-6
chr1	180733582	180733682	369999	0	+	0.37	(0.36,0.392]	chr1	39997	508	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.51205	5.65329	5.79453	2.39077e-6	9.49031e-8	1.5204e-4	8.06088e-6
chr17	72730583	72730682	9003787	0	-	0.373737	(0.36,0.392]	chr17	868455	51	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	4.52282	5.652145	6.78147	1.58282e-8	1e-12	1.55617e-6	1.73382e-10
chrX	101133449	101133548	10184333	0	+	0.434343	(0.424,0.459]	chrX	1014089	6	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	8	106	2	5.33752	5.65094	5.96436	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	57853575	57853675	9395970	0	+	0.41	(0.392,0.424]	chr19	917476	4	SS3_PROX	SS3_PROX:INTRON	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000423137.1:ENST00000484707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	5.33485	5.650735	5.96662	6.28695e-9	4.44158e-11	6.5739e-7	6.22225e-9
chr16	217254	217354	8486412	0	-	0.46	(0.459,0.49]	chr16	794148	76	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.61516	5.649570000000001	5.68398	9.49302e-8	5.57196e-8	8.06088e-6	4.89622e-6
chr7	151358861	151358959	4582895	0	+	0.489796	(0.459,0.49]	chr7	413243	23	INTRON	INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000468404.5:ENST00000568733.6:ENST00000470229.6:ENST00000470316.5:ENST00000483358.5:ENST00000493588.5:ENST00000480907.5:ENST00000477666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.61516	5.649570000000001	5.68398	9.49302e-8	5.57196e-8	8.06088e-6	4.89622e-6
chr12	31571302	31571402	7136217	0	-	0.35	(0.32,0.36]	chr12	655398	299	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	5.41695	5.647774999999999	5.8786	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	28302811	28302911	6857803	0	+	0.36	(0.32,0.36]	chr12	626405	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	4.70189	5.64738	6.59287	5.62794e-12	1.01197e-12	8.97873e-10	1.74544e-10
chr21	29428339	29428439	9797627	0	+	0.42	(0.392,0.424]	chr21	971205	690	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.81758	5.646750000000001	6.47592	6.29448e-8	3.31901e-12	5.585e-6	5.37234e-10
chr14	60274113	60274213	7639361	0	+	0.49	(0.459,0.49]	chr14	703278	53	INTRON	INTRON	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000531143.6:ENST00000532036.2:ENST00000395076.9:ENST00000325658.3:ENST00000528241.2:ENST00000525399.2:ENST00000531937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	4.68823	5.645835	6.60344	6.23768e-12	1e-12	9.83702e-10	1.72912e-10
chr1	161872461	161872561	318893	0	+	0.39	(0.36,0.392]	chr1	36131	10	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	153	2	5.41303	5.645765	5.8785	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	73257975	73258075	2917139	0	-	0.5	(0.49,0.526]	chr4	274543	3	SS5_PROX	SS5_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.48922	5.64485	5.80048	2.5213e-7	8.0778e-9	2.01203e-5	8.33659e-7
chr5	40829418	40829517	3453967	0	-	0.464646	(0.459,0.49]	chr5	317790	43	UTR3	UTR3:EXON_MRNA:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000511787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	464	2	5.55944	5.64479	5.73014	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	19609950	19610049	66602	0	+	0.515152	(0.49,0.526]	chr1	6350	15	INTRON	INTRON	MICOS10:NBL1	ENSG00000173436.15:ENSG00000158747.15	ENST00000648702.1:ENST00000617872.4:ENST00000602662.1:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.56417	5.6447199999999995	5.72527	1.40942e-7	1.60521e-8	1.1686e-5	1.5647e-6
chr1	153868830	153868930	769061	0	-	0.51	(0.49,0.526]	chr1	84218	401	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	5.56417	5.6447199999999995	5.72527	1.40942e-7	1.60521e-8	1.1686e-5	1.5647e-6
chr2	69385368	69385468	1476558	0	-	0.5	(0.49,0.526]	chr2	152788	109	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.56417	5.6447199999999995	5.72527	1.40942e-7	1.60521e-8	1.1686e-5	1.5647e-6
chr2	190210198	190210296	1649523	0	-	0.489796	(0.459,0.49]	chr2	169557	9	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000486981.1:ENST00000410045.5:ENST00000416732.5:ENST00000489147.1:ENST00000409820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	5.4806	5.643885	5.80717	4.11395e-7	1.22616e-8	3.09732e-5	1.22232e-6
chr7	152786040	152786140	4584454	0	+	0.47	(0.459,0.49]	chr7	413421	24	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.54928	5.64376	5.73824	2.53394e-7	2.1921e-8	1.97194e-5	2.0899e-6
chr3	23331382	23331482	1787051	0	+	0.34	(0.32,0.36]	chr3	183405	74	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	5.13625	5.64354	6.15083	7.13152e-9	1.52443e-9	7.41948e-7	1.74447e-7
chr5	41931296	41931393	3162711	0	+	0.340206	(0.32,0.36]	chr5	292101	10	INTRON	INTRON	FBXO4	ENSG00000151876.13	ENST00000296812.6:ENST00000513496.5:ENST00000281623.8:ENST00000509134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	4.51391	5.642795	6.77168	4.00732e-8	1e-12	3.64474e-6	1.73382e-10
chr18	21319592	21319692	9071982	0	+	0.38	(0.36,0.392]	chr18	876596	768	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	5.57843	5.63966	5.70089	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	207624566	207624653	1679088	0	-	0.436782	(0.424,0.459]	chr2	172698	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	METTL21A	ENSG00000144401.14	ENST00000432416.5:ENST00000458426.5:ENST00000425132.5:ENST00000448007.6:ENST00000411432.6:ENST00000406927.6:ENST00000442521.1:ENST00000461419.6:ENST00000471128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.37155	5.63875	5.90595	2.42251e-6	1.00338e-8	1.53938e-4	1.01215e-6
chr7	143878922	143879022	4877446	0	-	0.45	(0.424,0.459]	chr7	436691	19	INTRON	INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.37155	5.63875	5.90595	2.42251e-6	1.00338e-8	1.53938e-4	1.01215e-6
chr14	52929516	52929616	7831976	0	-	0.41	(0.392,0.424]	chr14	721392	12	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	5.44284	5.638625	5.83441	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	75403446	75403546	6446315	0	+	0.44	(0.424,0.459]	chr11	582458	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000530164.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000527273.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000528847.1:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.45551	5.6384799999999995	5.82145	1.50668e-6	1.92567e-8	9.96778e-5	1.85307e-6
chr2	1656997	1657097	1370150	0	-	0.61	(0.57,0.629]	chr2	141796	21	INTRON	INTRON	PXDN	ENSG00000130508.11	ENST00000252804.9:ENST00000478155.5:ENST00000433670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	4.98221	5.638375	6.29454	7.63595e-11	1.22125e-12	1.04338e-8	2.08948e-10
chr19	19534369	19534464	9311845	0	+	0.515789	(0.49,0.526]	chr19	902472	13	UTR3	UTR3:EXON_MRNA:INTRON	YJEFN3	ENSG00000250067.12	ENST00000436027.9:ENST00000458210.7:ENST00000514277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	444	2	5.3914	5.638095	5.88479	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	101133548	101133647	10184334	0	+	0.444444	(0.424,0.459]	chrX	1014089	7	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	5.2202	5.63804	6.05588	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	70222204	70222304	4412945	0	+	0.36	(0.32,0.36]	chr7	397006	275	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643587.1:ENST00000659051.1:ENST00000643060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	5.26021	5.637785	6.01536	9.59726e-9	1.14222e-9	9.74486e-7	1.33948e-7
chr3	196254897	196254996	2529811	0	-	0.343434	(0.32,0.36]	chr3	242501	62	INTRON	INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6:ENST00000411591.5:ENST00000430755.5:ENST00000473978.5:ENST00000460677.5:ENST00000444822.5:ENST00000412869.5:ENST00000438634.5:ENST00000491544.1:ENST00000443555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	5.00064	5.6376550000000005	6.27467	4.42887e-8	2.42526e-10	3.9809e-6	3.09612e-8
chr17	47674137	47674237	8734571	0	+	0.36	(0.32,0.36]	chr17	830126	1	SS3_PROX	SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	4.39699	5.636455	6.87592	8.67854e-8	1e-12	7.51259e-6	1.72912e-10
chr14	69768137	69768156	7681522	0	+	0.526316	(0.526,0.57]	chr14	706162	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1:ENST00000555412.1:ENST00000554021.1:ENST00000555349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	5.28723	5.63584	5.98445	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	191394585	191394681	1246512	0	+	0.427083	(0.424,0.459]	chr2	130615	10	INTRON	INTRON	MYO1B	ENSG00000128641.19	ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000392316.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	4.52859	5.635365	6.74214	3.27061e-12	1e-12	5.32344e-10	1.73382e-10
chr3	56678299	56678398	2291380	0	-	0.535354	(0.526,0.57]	chr3	224290	42	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.60452	5.634995	5.66547	6.77869e-8	4.05077e-8	5.95616e-6	3.67181e-6
chr6	5314171	5314271	3694945	0	+	0.53	(0.526,0.57]	chr6	336635	413	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000602691.1:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.60452	5.634995	5.66547	6.77869e-8	4.05077e-8	5.95616e-6	3.67181e-6
chr14	67260763	67260862	7666606	0	+	0.40404	(0.392,0.424]	chr14	705362	37	INTRON	INTRON	PALS1	ENSG00000072415.10	ENST00000677382.1:ENST00000676464.1:ENST00000676950.1:ENST00000677222.1:ENST00000555925.5:ENST00000556345.6:ENST00000261681.9:ENST00000554208.1:ENST00000557783.1:ENST00000678380.1:ENST00000557237.1:ENST00000677835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	5.11125	5.634645	6.15804	3.31137e-5	6.43194e-10	0.00159224	7.74888e-8
chr2	31923934	31924034	1410979	0	-	0.4	(0.392,0.424]	chr2	146752	2	SS3_PROX	SS3_PROX:INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.11125	5.634645	6.15804	3.31137e-5	6.43194e-10	0.00159224	7.74888e-8
chr9	130841804	130841904	5516347	0	+	0.32	[0,0.32]	chr9	495056	59	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	5.17798	5.63424	6.0905	5.34166e-9	1e-12	5.66355e-7	1.73382e-10
chr7	110788000	110788100	4811577	0	-	0.42	(0.392,0.424]	chr7	431911	1226	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.1781	5.634164999999999	6.09023	2.48959e-5	1.13607e-9	0.00122627	1.32549e-7
chr1	121206810	121206910	280126	0	+	0.49	(0.459,0.49]	chr1	28914	189	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	5.58315	5.633565	5.68398	5.57196e-8	1e-12	4.89622e-6	1.73382e-10
chr11	27405498	27405598	6583842	0	-	0.43	(0.424,0.459]	chr11	598926	126	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	10	135	2	5.52963	5.63286	5.73609	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	34625174	34625273	7802914	0	-	0.40404	(0.392,0.424]	chr14	718290	151	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	5.51581	5.632765	5.74972	1.07176e-6	1.25981e-7	7.36955e-5	1.05791e-5
chr6	129595988	129596088	4193420	0	-	0.4	(0.392,0.424]	chr6	381474	115	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3:ENST00000463225.1:ENST00000483367.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.51581	5.632765	5.74972	1.07176e-6	1.25981e-7	7.36955e-5	1.05791e-5
chr1	178115766	178115866	358794	0	+	0.35	(0.32,0.36]	chr1	39070	207	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.88688	5.632705	6.37853	9.03252e-8	1.01957e-10	7.79413e-6	1.36475e-8
chr9	89165193	89165293	5651338	0	-	0.33	(0.32,0.36]	chr9	506176	522	INTRON	INTRON	SHC3	ENSG00000148082.10	ENST00000375835.9	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.88688	5.632705	6.37853	9.03252e-8	1.01957e-10	7.79413e-6	1.36475e-8
chrX	149627545	149627645	10458065	0	-	0.41	(0.392,0.424]	chrX	1036141	157	INTRON	INTRON	TMEM185A	ENSG00000269556.9	ENST00000600449.8:ENST00000612022.1:ENST00000611119.4:ENST00000507237.5:ENST00000502900.2:ENST00000511776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.58314	5.632685	5.68223	7.33041e-7	1.931e-7	5.19799e-5	1.56398e-5
chr1	222947730	222947830	438389	0	+	0.29	[0,0.32]	chr1	47285	40	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3:ENST00000284476.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	5.17798	5.63202	6.08606	5.85315e-9	5.34166e-9	6.18098e-7	5.66355e-7
chr2	235589622	235589722	1347109	0	+	0.32	[0,0.32]	chr2	139200	647	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.1772	5.6316299999999995	6.08606	5.87341e-5	5.85315e-9	0.00262682	6.18098e-7
chr11	8717540	8717640	6551722	0	-	0.51	(0.49,0.526]	chr11	595707	4	SS5_PROX	SS5_PROX:INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000530438.5:ENST00000533020.5:ENST00000532734.5:ENST00000530593.5:ENST00000626808.2:ENST00000528527.5:ENST00000531060.1:ENST00000533425.5:ENST00000526057.5:ENST00000528196.5:ENST00000527510.5:ENST00000530580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	4.5316	5.6315100000000005	6.73142	3.93129e-11	1e-12	5.58009e-9	1.72912e-10
chr3	50096142	50096240	1869499	0	+	0.469388	(0.459,0.49]	chr3	189917	19	INTRON	INTRON	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000417905.1:ENST00000395174.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	4.87893	5.631225000000001	6.38352	1.10534e-12	1e-12	1.89699e-10	1.73382e-10
chr11	16741323	16741423	6333780	0	+	0.36	(0.32,0.36]	chr11	568252	21	INTRON	INTRON	C11orf58	ENSG00000110696.10	ENST00000527893.5:ENST00000524439.5:ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000525256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	5.29318	5.631220000000001	5.96926	1.5251e-5	3.15048e-8	8.01855e-4	2.93512e-6
chr11	71916780	71916873	6635923	0	-	0.344086	(0.32,0.36]	chr11	607973	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2:ENST00000529844.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	5.29318	5.631220000000001	5.96926	1.5251e-5	3.15048e-8	8.01855e-4	2.93512e-6
chr12	43959838	43959938	6883985	0	+	0.34	(0.32,0.36]	chr12	628131	151	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.29318	5.631220000000001	5.96926	1.5251e-5	3.15048e-8	8.01855e-4	2.93512e-6
chr18	12970155	12970255	9064811	0	+	0.35	(0.32,0.36]	chr18	876034	53	INTRON	INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000585730.5:ENST00000589446.5:ENST00000587761.1:ENST00000588251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	5.29318	5.631220000000001	5.96926	1.5251e-5	3.15048e-8	8.01855e-4	2.93512e-6
chr15	72270722	72270822	8232487	0	-	0.36	(0.32,0.36]	chr15	764076	3	SS5_PROX	SS5_PROX:INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000287196.13:ENST00000565443.5:ENST00000567440.5:ENST00000568360.5:ENST00000566844.1:ENST00000567633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	5.39576	5.630795	5.86583	9.86331e-6	6.04906e-8	5.39872e-4	5.40424e-6
chr4	139409780	139409880	2743867	0	+	0.34	(0.32,0.36]	chr4	260789	49	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.39576	5.630795	5.86583	9.86331e-6	6.04906e-8	5.39872e-4	5.40424e-6
chrX	41339604	41339680	10116297	0	+	0.355263	(0.32,0.36]	chrX	1008612	1	INTRON	INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000615313.5:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	5.39576	5.630795	5.86583	9.86331e-6	6.04906e-8	5.39872e-4	5.40424e-6
chr17	59274542	59274638	8755093	0	+	0.520833	(0.49,0.526]	chr17	833360	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GDPD1	ENSG00000153982.11	ENST00000284116.9:ENST00000581140.5:ENST00000579076.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	5.35492	5.63023	5.90554	1.0002e-6	1.93601e-9	7.00342e-5	2.18285e-7
chr2	206122888	206122988	1677004	0	-	0.5	(0.49,0.526]	chr2	172423	82	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.35492	5.63023	5.90554	1.0002e-6	1.93601e-9	7.00342e-5	2.18285e-7
chr7	74697169	74697268	4431169	0	+	0.515152	(0.49,0.526]	chr7	398246	57	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000432143.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.35492	5.63023	5.90554	1.0002e-6	1.93601e-9	7.00342e-5	2.18285e-7
chr5	32398034	32398132	3432267	0	-	0.55102	(0.526,0.57]	chr5	315730	3	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.48168	5.63022	5.77876	2.6732e-7	9.84906e-9	2.09843e-5	1.00136e-6
chr5	128023110	128023209	3586280	0	-	0.30303	[0,0.32]	chr5	325643	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000606855.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	5.46722	5.62713	5.78704	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	2755137	2755237	8304785	0	+	0.39	(0.36,0.392]	chr16	773096	11	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	5.38501	5.626295000000001	5.86758	5.98276e-8	2.7967e-11	5.2159e-6	4.06246e-9
chr6	106608914	106609014	4150421	0	-	0.45	(0.424,0.459]	chr6	378129	56	INTRON	INTRON	RTN4IP1	ENSG00000130347.13	ENST00000369063.8:ENST00000539449.2	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	4.98663	5.624359999999999	6.26209	4.11938e-9	3.1274e-11	4.43187e-7	4.50988e-9
chr1	100010106	100010201	243366	0	+	0.347368	(0.32,0.36]	chr1	24493	4	INTRON	INTRON	SLC35A3	ENSG00000117620.15	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000638876.1:ENST00000370155.9:ENST00000370153.6:ENST00000422078.1:ENST00000639148.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	65	2	5.32004	5.622109999999999	5.92418	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	79635049	79635149	7217388	0	-	0.38	(0.36,0.392]	chr12	665697	1	SS5_PROX	SS5_PROX:INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	4.84953	5.619999999999999	6.39047	3.80762e-11	3.76228e-11	5.38572e-9	5.3683e-9
chr1	224282768	224282866	866827	0	-	0.377551	(0.36,0.392]	chr1	96403	12	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.2225	5.6198049999999995	6.01711	2.06042e-5	9.48035e-9	0.00103061	9.6816e-7
chr14	75727772	75727872	7707093	0	+	0.38	(0.36,0.392]	chr14	708491	67	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000555422.5:ENST00000554935.5:ENST00000554148.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	5.2225	5.6198049999999995	6.01711	2.06042e-5	9.48035e-9	0.00103061	9.6816e-7
chr1	54221628	54221728	151680	0	+	0.54	(0.526,0.57]	chr1	18455	8	INTRON	INTRON	MRPL37	ENSG00000116221.15	ENST00000605337.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	4.22127	5.61922	7.01717	7.08189e-9	1e-12	7.36638e-7	1.72912e-10
chr17	50739712	50739805	8741860	0	+	0.311828	[0,0.32]	chr17	832124	12	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000513025.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	4.89255	5.61905	6.34555	2.15736e-7	1.33932e-10	1.70234e-5	1.78706e-8
chr12	42176498	42176597	7148062	0	-	0.393939	(0.392,0.424]	chr12	656148	39	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000551528.5:ENST00000548661.5:ENST00000546726.5:ENST00000546972.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	5.35092	5.61657	5.88222	1.74707e-11	1e-12	2.60849e-9	1.72912e-10
chr10	96913540	96913639	5950610	0	+	0.272727	[0,0.32]	chr10	533684	54	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.58056	5.615875	5.65119	1.7046e-6	1.20332e-6	1.13343e-4	8.2089e-5
chr3	39408903	39408986	1839747	0	+	0.53012	(0.526,0.57]	chr3	186472	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	5.40811	5.61539	5.82267	6.86579e-7	4.36723e-9	4.92496e-5	4.70004e-7
chr19	38674229	38674329	9344837	0	+	0.5	(0.49,0.526]	chr19	907170	256	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	5.31424	5.614105	5.91397	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	61959702	61959802	5868171	0	+	0.41	(0.392,0.424]	chr10	526533	189	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.32767	5.613355	5.89904	5.95442e-6	2.16736e-8	3.4453e-4	2.09062e-6
chr10	31462834	31462934	5828874	0	+	0.4	(0.392,0.424]	chr10	523997	12	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	5.39479	5.613105	5.83142	4.26975e-6	3.48252e-8	2.57151e-4	3.23132e-6
chr2	63990704	63990803	1469585	0	-	0.424242	(0.392,0.424]	chr2	152295	63	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.39479	5.613105	5.83142	4.26975e-6	3.48252e-8	2.57151e-4	3.23132e-6
chr11	8738376	8738476	6551937	0	-	0.51	(0.49,0.526]	chr11	595728	68	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530438.5:ENST00000532734.5:ENST00000626808.2:ENST00000528527.5:ENST00000533425.5:ENST00000526057.5:ENST00000528196.5:ENST00000527510.5:ENST00000530580.5:ENST00000532651.5:ENST00000531093.5:ENST00000533225.5:ENST00000526126.5:ENST00000526221.5:ENST00000529940.5:ENST00000528523.5:ENST00000527930.5:ENST00000534783.1:ENST00000533681.5:ENST00000526241.5:ENST00000530959.5:ENST00000533580.5:ENST00000526155.5:ENST00000534248.5:ENST00000527347.5:ENST00000533016.1:ENST00000527516.5:ENST00000527473.5:ENST00000533471.5:ENST00000530938.5:ENST00000524757.5:ENST00000527392.5:ENST00000526828.5:ENST00000525169.5:ENST00000534665.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	5.04178	5.61159	6.1814	1.57703e-5	2.69895e-11	8.20905e-4	3.91566e-9
chr15	64414906	64415004	8004121	0	+	0.5	(0.49,0.526]	chr15	740194	3	INTRON	INTRON	TRIP4	ENSG00000103671.10	ENST00000261884.8:ENST00000560567.5:ENST00000560475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	5.04178	5.61159	6.1814	1.57703e-5	2.69895e-11	8.20905e-4	3.91566e-9
chr3	195238309	195238408	2524991	0	-	0.59596	(0.57,0.629]	chr3	241797	111	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	5.38076	5.611370000000001	5.84198	5.85803e-7	1.89943e-9	4.27724e-5	2.14969e-7
chr4	108909871	108909971	2989207	0	-	0.59	(0.57,0.629]	chr4	280046	83	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	5.38076	5.611370000000001	5.84198	5.85803e-7	1.89943e-9	4.27724e-5	2.14969e-7
chr8	48012470	48012570	4984871	0	+	0.5	(0.49,0.526]	chr8	447259	35	INTRON	INTRON	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	5.04122	5.61131	6.1814	6.36415e-11	2.69895e-11	8.81514e-9	3.91566e-9
chr17	29778004	29778104	8904738	0	-	0.3	[0,0.32]	chr17	853479	167	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	4.4854	5.610365	6.73533	2.41197e-10	1e-12	3.0924e-8	1.72912e-10
chr9	100142850	100142950	5450455	0	+	0.46	(0.459,0.49]	chr9	486785	105	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	4.7569	5.608755	6.46061	1.37759e-8	1e-12	1.37123e-6	1.72912e-10
chr19	37345321	37345421	9338116	0	+	0.46	(0.459,0.49]	chr19	906344	3	SS5_PROX	SS5_PROX:INTRON	ZNF875	ENSG00000181666.19	ENST00000591471.5:ENST00000652615.1:ENST00000592362.5:ENST00000544914.5:ENST00000589188.5:ENST00000587829.5:ENST00000592768.5:ENST00000591417.5:ENST00000392153.8:ENST00000585623.5:ENST00000592168.5:ENST00000591391.5:ENST00000589392.5:ENST00000587437.5:ENST00000590386.5:ENST00000324411.8:ENST00000591259.5:ENST00000590582.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	4.75464	5.6076250000000005	6.46061	1.5089e-12	1e-12	2.54947e-10	1.72912e-10
chr17	4341366	4341465	8851736	0	-	0.444444	(0.424,0.459]	chr17	845751	57	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	5.52765	5.607075	5.6865	9.64047e-8	1e-12	8.13052e-6	1.72912e-10
chr15	90014244	90014344	8077274	0	+	0.45	(0.424,0.459]	chr15	746813	113	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.18388	5.606680000000001	6.02948	1.21594e-5	1.8912e-9	6.58699e-4	2.1436e-7
chr5	154963910	154964009	3366497	0	+	0.444444	(0.424,0.459]	chr5	309585	35	INTRON	INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5:ENST00000520040.5:ENST00000518364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.18388	5.606680000000001	6.02948	1.21594e-5	1.8912e-9	6.58699e-4	2.1436e-7
chr11	3716359	3716457	6541329	0	-	0.428571	(0.424,0.459]	chr11	594381	20	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.26756	5.606204999999999	5.94485	8.0232e-6	3.84993e-9	4.54299e-4	4.17496e-7
chr17	32374904	32375004	8700818	0	+	0.36	(0.32,0.36]	chr17	824121	16	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	5.13526	5.60556	6.07586	1.17495e-12	1e-12	2.01216e-10	1.73382e-10
chr17	37343089	37343186	8919029	0	-	0.505155	(0.49,0.526]	chr17	855248	29	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	24	2	5.20683	5.60515	6.00347	3.9703e-6	4.64321e-10	2.39291e-4	5.72685e-8
chr17	37356511	37356610	8919165	0	-	0.494949	(0.49,0.526]	chr17	855254	108	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	24	2	5.20683	5.60515	6.00347	3.9703e-6	4.64321e-10	2.39291e-4	5.72685e-8
chr10	21655063	21655162	5811747	0	+	0.40404	(0.392,0.424]	chr10	522872	29	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	139	2	5.54632	5.6044149999999995	5.66251	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34431499	34431598	9632938	0	+	0.373737	(0.36,0.392]	chr20	950773	66	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	5.47714	5.602005	5.72687	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr1	175005424	175005515	358503	0	+	0.362637	(0.36,0.392]	chr1	39044	2	INTRON	INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000367679.7:ENST00000473925.1:ENST00000406752.1:ENST00000405362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	5.55851	5.601965	5.64542	2.22977e-12	1e-12	3.69473e-10	1.73382e-10
chr6	45007462	45007561	4071283	0	-	0.30303	[0,0.32]	chr6	371427	33	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000674231.1:ENST00000371460.5:ENST00000637763.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.36319	5.6017150000000004	5.84024	1.13263e-5	1.72569e-7	6.25152e-4	1.40017e-5
chr10	92194034	92194134	6204653	0	-	0.53	(0.526,0.57]	chr10	554721	10	INTRON	INTRON	CPEB3	ENSG00000107864.15	ENST00000265997.5:ENST00000412050.8:ENST00000614585.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	5.10514	5.601705	6.09827	7.17844e-11	3.15845e-11	9.84697e-9	4.53933e-9
chr5	41915335	41915434	3162579	0	+	0.40404	(0.392,0.424]	chr5	292070	28	INTRON	INTRON	C5orf51	ENSG00000205765.10	ENST00000381647.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.54701	5.600795	6.65458	0.00102713	1e-12	0.0276375	1.72912e-10
chr2	86736741	86736841	1089039	0	+	0.38	(0.36,0.392]	chr2	116348	156	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.80788	5.599175	6.39047	1.47653e-7	3.80762e-11	1.22253e-5	5.38572e-9
chr20	49677292	49677392	9762544	0	-	0.56	(0.526,0.57]	chr20	967487	202	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.09465	5.59646	6.09827	1.16684e-5	7.17844e-11	6.16746e-4	9.84697e-9
chr6	5746894	5746994	3699280	0	+	0.42	(0.392,0.424]	chr6	336670	1332	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	4.96492	5.5963449999999995	6.22777	1.3437e-12	1e-12	2.28243e-10	1.72912e-10
chr19	41367387	41367487	9352830	0	+	0.47	(0.459,0.49]	chr19	909032	29	INTRON	INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.16672	5.596299999999999	6.02588	7.74288e-6	5.95023e-10	4.39068e-4	7.22535e-8
chr22	25054044	25054143	9912629	0	+	0.474747	(0.459,0.49]	chr22	984728	43	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	5.23503	5.5958950000000005	5.95676	5.25256e-6	1.17119e-9	3.11102e-4	1.35849e-7
chr12	20369097	20369190	6842054	0	+	0.526882	(0.526,0.57]	chr12	625039	7	UTR5	UTR5:EXON_MRNA	PDE3A	ENSG00000172572.7	ENST00000359062.4	protein_coding	protein_coding	protein_coding	protein_coding	24	383	2	5.15081	5.595644999999999	6.04048	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	91009953	91010053	685768	0	-	0.43	(0.424,0.459]	chr1	74554	272	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	5.36884	5.595145	5.82145	1.92567e-8	6.68643e-12	1.85307e-6	1.046e-9
chr3	168057053	168057152	2483119	0	-	0.434343	(0.424,0.459]	chr3	238238	83	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	4.74933	5.5948899999999995	6.44045	9.96009e-8	1.52944e-12	8.4812e-6	2.57541e-10
chr21	29401944	29402044	9797363	0	+	0.44	(0.424,0.459]	chr21	971205	426	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	4.66488	5.5934349999999995	6.52199	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	136470172	136470272	4210051	0	-	0.38	(0.36,0.392]	chr6	383043	34	INTRON	INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	5.25232	5.59243	5.93254	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	168644240	168644340	1198686	0	+	0.45	(0.424,0.459]	chr2	125668	128	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.2725	5.589225	5.90595	1.00338e-8	1.84447e-11	1.01215e-6	2.73328e-9
chr16	74327871	74327971	8598637	0	-	0.52	(0.49,0.526]	chr16	810400	146	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	4.9897	5.5884350000000005	6.18717	1.66076e-11	1e-12	2.50009e-9	1.72912e-10
chr12	49380468	49380568	6903069	0	+	0.51	(0.49,0.526]	chr12	629129	88	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	5.48922	5.588190000000001	5.68716	2.5213e-7	3.37299e-8	2.01203e-5	3.12343e-6
chr15	92889311	92889411	8086335	0	+	0.5	(0.49,0.526]	chr15	747883	6	INTRON	INTRON	CHASERR	ENSG00000272888.8	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000554894.5:ENST00000554133.5:ENST00000555520.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	23	2	5.48922	5.588190000000001	5.68716	2.5213e-7	3.37299e-8	2.01203e-5	3.12343e-6
chr15	92007334	92007434	8083964	0	+	0.47	(0.459,0.49]	chr15	747793	654	INTRON	INTRON	SLCO3A1	ENSG00000176463.14	ENST00000318445.11:ENST00000553653.5:ENST00000424469.2:ENST00000555769.5:ENST00000556649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	5.02728	5.58689	6.1465	3.90202e-10	6.25785e-11	4.86489e-8	8.69617e-9
chr10	35470031	35470131	5837169	0	+	0.52	(0.49,0.526]	chr10	524519	142	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	4.94238	5.586679999999999	6.23098	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	128222792	128222860	5500512	0	+	0.426471	(0.424,0.459]	chr9	491995	1	CDS	CDS:UTR3:EXON_MRNA	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000475805.5:ENST00000393594.7:ENST00000628346.2:ENST00000636280.1:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000637999.1:ENST00000441149.6:ENST00000482638.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	4.29889	5.58555	6.87221	1.12945e-5	1e-12	6.02727e-4	1.73382e-10
chrX	118380848	118380948	10207791	0	+	0.36	(0.32,0.36]	chrX	1016550	20	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	5.36788	5.58508	5.80228	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43250458	43250558	8937966	0	-	0.51	(0.49,0.526]	chr17	859071	203	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	18	259	2	4.71279	5.58439	6.45599	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	40082370	40082470	9946691	0	+	0.44	(0.424,0.459]	chr22	989390	364	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	5.39927	5.584125	5.76898	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	35648918	35649018	7806589	0	-	0.34	(0.32,0.36]	chr14	718742	130	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	5.36592	5.584065	5.80221	2.13657e-7	7.85492e-11	1.69216e-5	1.06962e-8
chr19	34429592	34429692	9328412	0	+	0.35	(0.32,0.36]	chr19	904357	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000592841.5:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	5.36592	5.584065	5.80221	2.13657e-7	7.85492e-11	1.69216e-5	1.06962e-8
chr9	18490459	18490559	5353124	0	+	0.41	(0.392,0.424]	chr9	477915	158	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1:ENST00000327883.11:ENST00000431052.6:ENST00000380548.9:ENST00000380570.8:ENST00000380566.8:ENST00000276935.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	5.35092	5.58328	5.81564	1.74707e-11	1e-12	2.60849e-9	1.72912e-10
chr5	150375338	150375410	3356907	0	+	0.625	(0.57,0.629]	chr5	308580	1	CDS	CDS:EXON_MRNA:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000515035.5:ENST00000674413.1:ENST00000514442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	5.54822	5.582325	5.61643	8.11421e-8	4.34385e-8	7.06304e-6	3.91431e-6
chr1	39114908	39115007	111959	0	+	0.474747	(0.459,0.49]	chr1	12882	88	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	5.54928	5.58222	5.61516	2.53394e-7	9.49302e-8	1.97194e-5	8.06088e-6
chr3	33651788	33651888	2231874	0	-	0.49	(0.459,0.49]	chr3	216003	64	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000496954.2:ENST00000482896.5:ENST00000498331.1:ENST00000486796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	5.54928	5.58222	5.61516	2.53394e-7	9.49302e-8	1.97194e-5	8.06088e-6
chr14	75768455	75768554	7707514	0	+	0.383838	(0.36,0.392]	chr14	708559	17	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000555422.5:ENST00000556893.5:ENST00000554510.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.73928	5.58096	6.42264	5.12952e-7	1.2419e-11	3.78931e-5	1.89925e-9
chr1	218313212	218313312	431704	0	+	0.43	(0.424,0.459]	chr1	46458	52	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.5376	5.57969	5.62178	4.83052e-7	2.83203e-7	3.58077e-5	2.17914e-5
chr12	116186961	116187061	7290789	0	-	0.45	(0.424,0.459]	chr12	672490	751	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.5376	5.57969	5.62178	4.83052e-7	2.83203e-7	3.58077e-5	2.17914e-5
chr3	11638552	11638652	2173612	0	-	0.45	(0.424,0.459]	chr3	212352	50	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.5376	5.57969	5.62178	4.83052e-7	2.83203e-7	3.58077e-5	2.17914e-5
chr11	27430947	27431046	6584097	0	-	0.484848	(0.459,0.49]	chr11	598932	177	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	5.36002	5.578614999999999	5.79721	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	8367865	8367965	5107992	0	-	0.5	(0.49,0.526]	chr8	457971	279	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.35492	5.5777	5.80048	1.0002e-6	8.0778e-9	7.00342e-5	8.33659e-7
chr2	202729860	202729960	1269223	0	+	0.35	(0.32,0.36]	chr2	132143	31	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.13957	5.577465	6.01536	6.71414e-5	9.59726e-9	0.00291649	9.74486e-7
chr4	128157900	128158000	2738576	0	+	0.34	(0.32,0.36]	chr4	260353	342	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.13957	5.577465	6.01536	6.71414e-5	9.59726e-9	0.00291649	9.74486e-7
chr1	45692106	45692206	136992	0	+	0.36	(0.32,0.36]	chr1	16848	6	INTRON	INTRON	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	5.13625	5.575805000000001	6.01536	9.59726e-9	7.13152e-9	9.74486e-7	7.41948e-7
chr15	80737912	80738012	8054739	0	+	0.33	(0.32,0.36]	chr15	744488	324	INTRON	INTRON	ABHD17C	ENSG00000136379.12	ENST00000560609.1:ENST00000258884.5:ENST00000558464.1:ENST00000559506.5:ENST00000560126.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	5.13625	5.575805000000001	6.01536	9.59726e-9	7.13152e-9	9.74486e-7	7.41948e-7
chr3	29299154	29299254	1810348	0	+	0.36	(0.32,0.36]	chr3	183972	170	INTRON	INTRON	RBMS3	ENSG00000144642.22	ENST00000636680.2:ENST00000637842.1:ENST00000434693.6:ENST00000383767.7:ENST00000471426.1:ENST00000445033.5:ENST00000383766.6:ENST00000273139.13:ENST00000452462.5:ENST00000456853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	5.13625	5.575805000000001	6.01536	9.59726e-9	7.13152e-9	9.74486e-7	7.41948e-7
chr16	31451045	31451141	8547593	0	-	0.458333	(0.424,0.459]	chr16	804760	9	INTRON	INTRON	ENSG00000261474	ENSG00000261474.1	ENST00000569291.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	4.98663	5.575265	6.1639	4.11938e-9	1.54441e-10	4.43187e-7	2.03038e-8
chr9	126976298	126976398	5492870	0	+	0.44	(0.424,0.459]	chr9	490901	100	INTRON	INTRON	RALGPS1	ENSG00000136828.19	ENST00000424082.6:ENST00000259351.10:ENST00000394022.7:ENST00000373439.6:ENST00000394011.7:ENST00000319107.8:ENST00000472427.5:ENST00000373436.5:ENST00000480993.1:ENST00000373434.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	4.98663	5.575265	6.1639	4.11938e-9	1.54441e-10	4.43187e-7	2.03038e-8
chr17	3624731	3624830	8845894	0	-	0.565657	(0.526,0.57]	chr17	844673	1	INTRON	INTRON	SHPK	ENSG00000197417.9	ENST00000225519.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.54252	5.57352	5.60452	1.66713e-7	6.77869e-8	1.36401e-5	5.95616e-6
chr11	108215541	108215640	6735790	0	-	0.40404	(0.392,0.424]	chr11	614524	66	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.11125	5.572795	6.03434	3.31137e-5	3.73254e-9	0.00159224	4.03186e-7
chr12	57326139	57326239	7181179	0	-	0.42	(0.392,0.424]	chr12	663014	153	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000403821.6:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.11125	5.572795	6.03434	3.31137e-5	3.73254e-9	0.00159224	4.03186e-7
chr8	70278054	70278154	5189268	0	-	0.42	(0.392,0.424]	chr8	465122	328	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.1781	5.57236	5.96662	2.48959e-5	6.28695e-9	0.00122627	6.5739e-7
chr17	19659927	19660027	8672321	0	+	0.43	(0.424,0.459]	chr17	820744	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000671841.1:ENST00000476965.5:ENST00000571537.1:ENST00000578696.1:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.37155	5.5712	5.77085	2.42251e-6	5.32819e-8	1.53938e-4	4.72329e-6
chr2	73929923	73930022	1078038	0	+	0.353535	(0.32,0.36]	chr2	114803	25	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	5.02236	5.57066	6.11896	1.56263e-8	4.65151e-9	1.54408e-6	4.96782e-7
chr12	48104503	48104602	7157296	0	-	0.383838	(0.36,0.392]	chr12	657491	26	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000551798.1:ENST00000547181.5:ENST00000549882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.43936	5.57005	5.70074	3.42448e-6	3.77982e-7	2.10826e-4	2.84782e-5
chr17	46519414	46519513	8727991	0	+	0.373737	(0.36,0.392]	chr17	829268	16	INTRON	INTRON	LRRC37A2	ENSG00000238083.8	ENST00000576629.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.43936	5.57005	5.70074	3.42448e-6	3.77982e-7	2.10826e-4	2.84782e-5
chr17	64890449	64890548	8987854	0	-	0.373737	(0.36,0.392]	chr17	866411	3	INTRON	INTRON	LRRC37A3	ENSG00000176809.11	ENST00000584306.6:ENST00000339474.9:ENST00000400877.7:ENST00000319651.9:ENST00000581368.5:ENST00000584788.5:ENST00000580464.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.43936	5.57005	5.70074	3.42448e-6	3.77982e-7	2.10826e-4	2.84782e-5
chrX	53389015	53389114	10345369	0	-	0.373737	(0.36,0.392]	chrX	1027359	54	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000470241.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.43936	5.57005	5.70074	3.42448e-6	3.77982e-7	2.10826e-4	2.84782e-5
chr3	158182079	158182179	2054015	0	+	0.39	(0.36,0.392]	chr3	204858	453	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	5.51205	5.56995	5.62785	2.39077e-6	5.69775e-7	1.5204e-4	4.16055e-5
chrX	74276640	74276739	10377133	0	-	0.383838	(0.36,0.392]	chrX	1030080	18	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1:ENST00000418855.6:ENST00000602576.5	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	5.51205	5.56995	5.62785	2.39077e-6	5.69775e-7	1.5204e-4	4.16055e-5
chr14	71390595	71390695	7686219	0	+	0.49	(0.459,0.49]	chr14	706532	106	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.33218	5.569675	5.80717	1.78412e-6	1.22616e-8	1.1709e-4	1.22232e-6
chr17	38302155	38302254	8707702	0	+	0.464646	(0.459,0.49]	chr17	825127	23	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.33218	5.569675	5.80717	1.78412e-6	1.22616e-8	1.1709e-4	1.22232e-6
chr5	140232412	140232512	3335952	0	+	0.47	(0.459,0.49]	chr5	306221	36	INTRON	INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.33218	5.569675	5.80717	1.78412e-6	1.22616e-8	1.1709e-4	1.22232e-6
chr19	40671391	40671487	9498744	0	-	0.46875	(0.459,0.49]	chr19	935818	10	INTRON	INTRON	NUMBL	ENSG00000105245.9	ENST00000252891.8:ENST00000598779.5:ENST00000540131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.40069	5.569465	5.73824	1.15324e-6	2.1921e-8	7.95154e-5	2.0899e-6
chr20	50743668	50743768	9671430	0	+	0.48	(0.459,0.49]	chr20	955878	52	INTRON	INTRON	PARD6B	ENSG00000124171.9	ENST00000371610.7:ENST00000396039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.40069	5.569465	5.73824	1.15324e-6	2.1921e-8	7.95154e-5	2.0899e-6
chr9	27513573	27513673	5594028	0	-	0.49	(0.459,0.49]	chr9	501268	575	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.40069	5.569465	5.73824	1.15324e-6	2.1921e-8	7.95154e-5	2.0899e-6
chr12	105182717	105182816	7268339	0	-	0.373737	(0.36,0.392]	chr12	669513	51	INTRON	INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000553109.1:ENST00000548425.1:ENST00000547809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	5.3888	5.569165	5.74953	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	57179897	57179997	3178418	0	+	0.36	(0.32,0.36]	chr5	293661	31	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	5.01784	5.5684000000000005	6.11896	4.65151e-9	3.22675e-12	4.96782e-7	5.24685e-10
chr19	19136960	19137056	9460141	0	-	0.552083	(0.526,0.57]	chr19	930585	17	INTRON	INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587096.5:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1:ENST00000592147.1:ENST00000586357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	4.67101	5.56823	6.46545	2.77771e-8	1e-12	2.62893e-6	1.73382e-10
chr4	75650542	75650640	2918714	0	-	0.336735	(0.32,0.36]	chr4	274748	3	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000678642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	5.26021	5.56795	5.87569	1.14222e-9	1e-12	1.33948e-7	1.73382e-10
chr18	23161949	23162049	9078929	0	+	0.51	(0.49,0.526]	chr18	877166	56	INTRON	INTRON	CABLES1	ENSG00000134508.13	ENST00000579963.5:ENST00000400473.6:ENST00000580153.5:ENST00000256925.12:ENST00000582882.5:ENST00000583220.5:ENST00000580644.5:ENST00000578052.1:ENST00000585061.1:ENST00000420687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	5.11613	5.56792	6.01971	1.03252e-5	2.59274e-10	5.57702e-4	3.28602e-8
chr9	136408698	136408798	5767016	0	-	0.66	(0.629,1]	chr9	518324	3	SS5_PROX	SS5_PROX:INTRON	ENTR1	ENSG00000165689.17	ENST00000357365.8:ENST00000298537.11:ENST00000371725.7:ENST00000371723.4:ENST00000446833.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	4.28348	5.56738	6.85128	4.16931e-11	1e-12	5.90389e-9	1.72912e-10
chr8	125206385	125206485	5086150	0	+	0.38	(0.36,0.392]	chr8	455136	237	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	5.53556	5.56698	5.5984	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	1360430	1360526	8298519	0	+	0.59375	(0.57,0.629]	chr16	771553	22	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527168.6:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	5.3128	5.565875	5.81895	9.9438e-7	3.22847e-9	7.00342e-5	3.54085e-7
chr8	140087251	140087351	5291986	0	-	0.61	(0.57,0.629]	chr8	472690	52	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000517667.5:ENST00000520532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	5.38076	5.565655	5.75055	5.85803e-7	6.63557e-9	4.27724e-5	6.91177e-7
chr8	80071643	80071743	5200618	0	-	0.51	(0.49,0.526]	chr8	465838	39	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000520795.5:ENST00000520741.1:ENST00000521561.1:ENST00000523783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	99	2	4.35256	5.56512	6.77768	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	125913639	125913738	3871932	0	+	0.313131	[0,0.32]	chr6	354061	133	INTRON	INTRON	NCOA7	ENSG00000111912.20	ENST00000368357.7:ENST00000392477.7:ENST00000229634.13:ENST00000433571.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	5.04231	5.564185	6.08606	3.40623e-8	5.85315e-9	3.14246e-6	6.18098e-7
chr11	47545912	47546012	6605036	0	-	0.53	(0.526,0.57]	chr11	601350	213	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000526419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.40811	5.562915	5.71772	6.86579e-7	1.72001e-8	4.92496e-5	1.66972e-6
chr3	185929645	185929740	2512843	0	-	0.347368	(0.32,0.36]	chr3	240621	7	INTRON	INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000477939.1:ENST00000471134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.51031	5.56178	5.61325	2.41138e-6	1.45077e-6	1.53938e-4	9.68953e-5
chr9	17321439	17321539	5343249	0	+	0.34	(0.32,0.36]	chr9	477736	118	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.51031	5.56178	5.61325	2.41138e-6	1.45077e-6	1.53938e-4	9.68953e-5
chr21	29306021	29306121	9796397	0	+	0.38	(0.36,0.392]	chr21	971177	3	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	5.55851	5.56112	5.56373	2.22977e-12	1e-12	3.69473e-10	1.73382e-10
chr1	6546776	6546876	505659	0	-	0.36	(0.32,0.36]	chr1	54588	12	INTRON	INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	4.74209	5.560309999999999	6.37853	1.01957e-10	1e-12	1.36475e-8	1.73382e-10
chr6	32960774	32960873	4039732	0	-	0.494949	(0.49,0.526]	chr6	367624	78	INTRON	INTRON	HLA-DMA	ENSG00000204257.15	ENST00000464392.1:ENST00000422832.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.85538	5.55907	6.26276	6.26806e-5	6.58018e-12	0.00277665	1.03239e-9
chr9	36219337	36219437	5612228	0	-	0.51	(0.49,0.526]	chr9	503365	1	SS5_PROX	SS5_PROX:INTRON	GNE	ENSG00000159921.20	ENST00000396594.8:ENST00000642385.2:ENST00000543356.7:ENST00000539208.5:ENST00000447283.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	4.40557	5.55857	6.71157	7.28528e-10	1e-12	8.71496e-8	1.73382e-10
chr1	957954	958051	491010	0	-	0.453608	(0.424,0.459]	chr1	51967	8	EXON_MRNA	EXON_MRNA:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	85	2	5.52406	5.558020000000001	5.59198	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	74414975	74415075	5897361	0	+	0.34	(0.32,0.36]	chr10	529777	160	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	4.73736	5.557945	6.37853	5.18532e-7	1.01957e-10	3.83329e-5	1.36475e-8
chr3	179579360	179579457	2115237	0	+	0.206186	[0,0.32]	chr3	207066	21	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000487978.5:ENST00000467615.5:ENST00000479056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.1772	5.5568100000000005	5.93642	5.87341e-5	3.87502e-8	0.00262682	3.55241e-6
chr7	114950477	114950577	4516764	0	+	0.31	[0,0.32]	chr7	406855	77	INTRON	INTRON	MDFIC	ENSG00000135272.13	ENST00000393486.6:ENST00000431629.5:ENST00000427207.5:ENST00000498196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.1772	5.5568100000000005	5.93642	5.87341e-5	3.87502e-8	0.00262682	3.55241e-6
chr12	118096014	118096114	7293761	0	-	0.5	(0.49,0.526]	chr12	672789	2	SS3_PROX	SS3_PROX:INTRON	VSIG10	ENSG00000176834.14	ENST00000359236.10:ENST00000538357.1:ENST00000536905.5:ENST00000541855.1:ENST00000542011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	5.20683	5.556185	5.90554	3.9703e-6	1.93601e-9	2.39291e-4	2.18285e-7
chrX	139857569	139857669	10455536	0	-	0.51	(0.49,0.526]	chrX	1035914	254	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	5.28142	5.55583	5.83024	2.46593e-6	4.05406e-9	1.54892e-4	4.37881e-7
chr12	56438624	56438724	7177645	0	-	0.53	(0.526,0.57]	chr12	662112	40	INTRON	INTRON	TIMELESS	ENSG00000111602.12	ENST00000553532.6:ENST00000229201.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	5.03431	5.553845	6.07338	1.64566e-5	1.42281e-10	8.48927e-4	1.85512e-8
chr6	165613891	165613991	4266871	0	-	0.56	(0.526,0.57]	chr6	386857	25	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	5.03431	5.553845	6.07338	1.64566e-5	1.42281e-10	8.48927e-4	1.85512e-8
chr3	105570352	105570451	1945358	0	+	0.292929	[0,0.32]	chr3	196075	173	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000472644.6:ENST00000486979.6:ENST00000465413.6:ENST00000491388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	5.10019	5.553775	6.00736	2.47801e-8	9.14777e-9	2.36756e-6	9.40372e-7
chr7	80546805	80546894	4450852	0	+	0.393258	(0.392,0.424]	chr7	399991	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000648416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	5.01697	5.553599999999999	6.09023	7.03248e-9	1.13607e-9	7.35448e-7	1.32549e-7
chr12	123512260	123512360	7314348	0	-	0.54	(0.526,0.57]	chr12	675726	124	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	5.32876	5.55264	5.77652	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	82229168	82229265	4112505	0	-	0.453608	(0.424,0.459]	chr6	374756	15	INTRON	INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	4.74933	5.5516749999999995	6.35402	9.96009e-8	6.61571e-12	8.4812e-6	1.03402e-9
chr14	60095712	60095812	7638316	0	+	0.4	(0.392,0.424]	chr14	703181	29	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000391611.6:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	4.94119	5.549614999999999	6.15804	1.23024e-8	6.43194e-10	1.23695e-6	7.74888e-8
chr5	181252522	181252622	3409422	0	+	0.38	(0.36,0.392]	chr5	313419	42	INTRON	INTRON	CTC-338M12.4	ENSG00000233937.8	ENST00000506340.3:ENST00000505151.6:ENST00000511331.5:ENST00000417281.2	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	5.01983	5.549564999999999	6.0793	2.64141e-9	3.09874e-12	2.93923e-7	5.0565e-10
chr2	74420442	74420542	1496746	0	-	0.41	(0.392,0.424]	chr2	154753	20	INTRON	INTRON	C2orf81	ENSG00000284308.2	ENST00000612891.4:ENST00000684111.1:ENST00000640331.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.51581	5.549475	5.58314	1.07176e-6	7.33041e-7	7.36955e-5	5.19799e-5
chr6	117572304	117572399	4174878	0	-	0.421053	(0.392,0.424]	chr6	380283	10	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.51581	5.549475	5.58314	1.07176e-6	7.33041e-7	7.36955e-5	5.19799e-5
chr5	149528612	149528710	3636388	0	-	0.418367	(0.392,0.424]	chr5	330383	31	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	4.89327	5.5486699999999995	6.20407	3.77123e-8	2.05488e-10	3.4456e-6	2.64594e-8
chr6	165578633	165578733	4266516	0	-	0.34	(0.32,0.36]	chr6	386849	17	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000648884.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.29318	5.547695	5.80221	1.5251e-5	2.13657e-7	8.01855e-4	1.69216e-5
chr11	35663211	35663305	6371642	0	+	0.62766	(0.57,0.629]	chr11	571028	1	CDS	CDS:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	5.15199	5.54754	5.94309	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227087497	227087597	874886	0	-	0.36	(0.32,0.36]	chr1	97511	61	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000442054.5:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.39576	5.547375000000001	5.69899	9.86331e-6	3.81705e-7	5.39872e-4	2.90385e-5
chr10	86777205	86777305	5922748	0	+	0.35	(0.32,0.36]	chr10	530897	199	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.39576	5.547375000000001	5.69899	9.86331e-6	3.81705e-7	5.39872e-4	2.90385e-5
chr11	122299445	122299543	6765221	0	-	0.367347	(0.36,0.392]	chr11	617621	41	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1:ENST00000528381.1:ENST00000656868.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	4.57244	5.54675	6.52106	2.92322e-6	2.09599e-12	1.80583e-4	3.49782e-10
chr12	64695403	64695501	6938832	0	+	0.438776	(0.424,0.459]	chr12	635145	6	UTR3	UTR3:EXON_MRNA	RASSF3	ENSG00000153179.13	ENST00000542104.6:ENST00000283172.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	5.18608	5.546015	5.90595	1.00338e-8	8.58015e-11	1.01215e-6	1.16412e-8
chr7	133759698	133759798	4555850	0	+	0.45	(0.424,0.459]	chr7	409421	1292	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	5.18608	5.546015	5.90595	1.00338e-8	8.58015e-11	1.01215e-6	1.16412e-8
chr1	180003587	180003687	366828	0	+	0.37	(0.36,0.392]	chr1	39680	3	SS5_PROX	SS5_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.88881	5.54593	6.20305	8.92448e-8	4.41027e-10	7.65609e-6	5.4191e-8
chr22	29018497	29018597	9921252	0	+	0.45	(0.424,0.459]	chr22	985297	309	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5:ENST00000406323.3	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	4.95809	5.544905	6.13172	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	100374557	100374652	5956849	0	+	0.421053	(0.392,0.424]	chr10	534483	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OLMALINC	ENSG00000235823.4	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000686136.1:ENST00000690014.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1:ENST00000454935.1:ENST00000654288.1:ENST00000669693.1:ENST00000664225.1:ENST00000664516.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	4.81758	5.54477	6.27196	6.29448e-8	1.10884e-10	5.585e-6	1.47443e-8
chr4	165918233	165918333	2783095	0	+	0.38	(0.36,0.392]	chr4	263894	428	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.29492	5.544725	5.79453	1.51392e-5	9.49031e-8	7.85619e-4	8.06088e-6
chr2	86543946	86544046	1505766	0	-	0.42	(0.392,0.424]	chr2	156110	12	INTRON	INTRON	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5:ENST00000409225.2:ENST00000393773.7:ENST00000486404.5:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	5.05503	5.544685	6.03434	3.73254e-9	2.39312e-9	4.03186e-7	2.68297e-7
chr11	67323132	67323232	6425167	0	+	0.43	(0.424,0.459]	chr11	579309	14	INTRON	INTRON	RAD9A	ENSG00000172613.8	ENST00000622583.4	protein_coding	processed_transcript	protein_coding	processed_transcript	0	18	2	5.26756	5.544504999999999	5.82145	8.0232e-6	1.92567e-8	4.54299e-4	1.85307e-6
chr18	35593254	35593354	9096822	0	+	0.47	(0.459,0.49]	chr18	878909	110	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	5.23503	5.54333	5.85163	5.25256e-6	5.06515e-9	3.11102e-4	5.39084e-7
chr17	853111	853211	8832537	0	-	0.57	(0.526,0.57]	chr17	842919	267	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575801.5:ENST00000537628.6:ENST00000575455.5:ENST00000577098.5:ENST00000571338.1:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	5.19933	5.5415600000000005	5.88379	4.16513e-6	2.39626e-9	2.48371e-4	2.67554e-7
chr6	111760822	111760922	4169058	0	-	0.54	(0.526,0.57]	chr6	379644	10	INTRON	INTRON	FYN	ENSG00000010810.17	ENST00000354650.7:ENST00000368682.7:ENST00000368667.6:ENST00000368678.8:ENST00000520518.5:ENST00000518295.5:ENST00000523238.5:ENST00000524310.5:ENST00000523574.5:ENST00000518630.5:ENST00000523570.5:ENST00000484067.6:ENST00000521062.5:ENST00000462598.7:ENST00000521361.5:ENST00000487824.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	5.19933	5.5415600000000005	5.88379	4.16513e-6	2.39626e-9	2.48371e-4	2.67554e-7
chr2	164674193	164674292	1597815	0	-	0.484848	(0.459,0.49]	chr2	165438	79	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000495084.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	31	2	4.93546	5.540979999999999	6.1465	1.66582e-9	6.25785e-11	1.91035e-7	8.69617e-9
chr11	61306705	61306804	6611660	0	-	0.424242	(0.392,0.424]	chr11	602892	23	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	5.32767	5.538695000000001	5.74972	5.95442e-6	1.25981e-7	3.4453e-4	1.05791e-5
chr12	119812420	119812520	7297766	0	-	0.41	(0.392,0.424]	chr12	673193	80	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.39479	5.5385100000000005	5.68223	4.26975e-6	1.931e-7	2.57151e-4	1.56398e-5
chr17	4852319	4852419	8634696	0	+	0.41	(0.392,0.424]	chr17	815446	183	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	5.39479	5.5385100000000005	5.68223	4.26975e-6	1.931e-7	2.57151e-4	1.56398e-5
chr5	113558507	113558606	3279897	0	+	0.424242	(0.392,0.424]	chr5	301981	20	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.39479	5.5385100000000005	5.68223	4.26975e-6	1.931e-7	2.57151e-4	1.56398e-5
chr10	87874287	87874386	5927397	0	+	0.272727	[0,0.32]	chr10	531287	74	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	4.31876	5.537455	6.75615	5.15904e-5	1e-12	0.00235512	1.73382e-10
chr6	145901759	145901858	4226753	0	-	0.434343	(0.424,0.459]	chr6	384045	64	INTRON	INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	4.63564	5.53731	6.43898	1.40003e-10	2.53975e-12	1.85644e-8	4.16121e-10
chr1	154248443	154248541	303572	0	+	0.295918	[0,0.32]	chr1	32658	17	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.72543	5.53549	6.34555	1.35488e-6	1.33932e-10	9.17479e-5	1.78706e-8
chr21	45529780	45529878	9887626	0	-	0.479592	(0.459,0.49]	chr21	981053	35	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	5.19135	5.533939999999999	5.87653	1.19432e-11	1e-12	1.83308e-9	1.72912e-10
chr3	42601960	42602060	1849411	0	+	0.37	(0.36,0.392]	chr3	187189	10	EXON_MRNA	EXON_MRNA:INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000460910.5:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000459950.1:ENST00000442970.5:ENST00000445842.1:ENST00000478488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	5.48807	5.53325	5.57843	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	62584575	62584673	6615836	0	-	0.459184	(0.424,0.459]	chr11	603599	16	INTRON	INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6:ENST00000278279.7:ENST00000494385.1:ENST00000478537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.71424	5.53061	6.34698	3.07139e-4	1.28346e-11	0.0105767	1.9463e-9
chr3	25557059	25557159	1799704	0	+	0.42	(0.392,0.424]	chr3	183662	212	INTRON	INTRON	RARB	ENSG00000077092.20	ENST00000687676.1:ENST00000687353.1:ENST00000686715.1:ENST00000383772.9:ENST00000688892.1:ENST00000690398.1:ENST00000693261.1:ENST00000691912.1:ENST00000687083.1:ENST00000685523.1:ENST00000330688.9:ENST00000437042.7:ENST00000480001.6:ENST00000479097.6:ENST00000462272.6:ENST00000458646.2:ENST00000691580.1:ENST00000689700.1:ENST00000693580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	5.16055	5.529795	5.89904	2.16736e-8	4.63789e-10	2.09062e-6	5.6824e-8
chr17	80381485	80381585	9027898	0	-	0.52	(0.49,0.526]	chr17	871778	2	SS3_PROX	SS3_PROX:INTRON	RNF213-AS1	ENSG00000263069.6	ENST00000575034.5:ENST00000572151.1:ENST00000667202.1:ENST00000573394.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	5.13094	5.529515	5.92809	1.02462e-9	2.38916e-11	1.20726e-7	3.48506e-9
chr14	95090397	95090497	7907312	0	-	0.27	[0,0.32]	chr14	728680	43	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DICER1	ENSG00000100697.16	ENST00000343455.8:ENST00000529720.2:ENST00000674628.2:ENST00000675540.2:ENST00000531162.7:ENST00000526495.6:ENST00000696734.1:ENST00000696733.1:ENST00000527416.2:ENST00000393063.6:ENST00000675995.1:ENST00000527414.5:ENST00000696735.1:ENST00000541352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	5.17821	5.52937	5.88053	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	229273062	229273162	450857	0	+	0.48	(0.459,0.49]	chr1	48909	13	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000481981.1:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	87	2	5.01478	5.529205	6.04363	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	105281247	105281347	4799216	0	-	0.45	(0.424,0.459]	chr7	431078	120	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	5.36884	5.52767	5.6865	9.64047e-8	6.68643e-12	8.13052e-6	1.046e-9
chr12	64800470	64800570	6939269	0	+	0.52	(0.49,0.526]	chr12	635177	127	INTRON	INTRON	TBC1D30	ENSG00000111490.15	ENST00000674237.1:ENST00000542120.6:ENST00000456757.6:ENST00000674171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	5.48922	5.526695	5.56417	2.5213e-7	1.40942e-7	2.01203e-5	1.1686e-5
chr17	58002318	58002418	8970223	0	-	0.37	(0.36,0.392]	chr17	863505	15	UTR3	UTR3:EXON_MRNA	SRSF1	ENSG00000136450.13	ENST00000258962.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	4.65899	5.52473	6.39047	1.05595e-9	3.80762e-11	1.2432e-7	5.38572e-9
chr10	110245818	110245918	5974931	0	+	0.38	(0.36,0.392]	chr10	536911	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	5.47714	5.524570000000001	5.572	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr11	62887689	62887779	6408894	0	+	0.366667	(0.36,0.392]	chr11	575486	2	SS3_PROX	SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	5.47714	5.524570000000001	5.572	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr4	164307549	164307649	3077320	0	-	0.37	(0.36,0.392]	chr4	284905	723	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000508725.5:ENST00000505391.5:ENST00000515471.5:ENST00000510075.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	4.65848	5.524475	6.39047	8.06613e-7	3.80762e-11	5.78931e-5	5.38572e-9
chr12	42417255	42417355	6881884	0	+	0.37	(0.36,0.392]	chr12	627985	169	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	5.18097	5.524275	5.86758	5.98276e-8	8.72996e-10	5.2159e-6	1.04054e-7
chr20	11895935	11896034	9580137	0	+	0.383838	(0.36,0.392]	chr20	947791	30	INTRON	INTRON	BTBD3	ENSG00000132640.15	ENST00000254977.7:ENST00000399006.6:ENST00000405977.5:ENST00000449299.5:ENST00000450368.1:ENST00000618918.4:ENST00000422390.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.65673	5.5236	6.39047	7.48315e-4	3.80762e-11	0.0220209	5.38572e-9
chr15	75027452	75027550	8043201	0	+	0.520408	(0.49,0.526]	chr15	743109	35	INTRON	INTRON	PPCDC	ENSG00000138621.12	ENST00000568207.5:ENST00000564923.5:ENST00000342932.8:ENST00000569562.5:ENST00000562192.1:ENST00000568649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	4.70518	5.522475	6.33977	1.2507e-8	1.64846e-12	1.25541e-6	2.75276e-10
chrX	103683982	103684081	10397742	0	-	0.373737	(0.36,0.392]	chrX	1031983	50	INTRON	INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	5.32217	5.52245	5.72273	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46120923	46121023	8948610	0	-	0.48	(0.459,0.49]	chr17	860847	2	SS5_PROX	SS5_PROX:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1:ENST00000576248.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	45	2	4.37357	5.521725	6.66988	2.57494e-12	1e-12	4.27081e-10	1.72912e-10
chr12	49599130	49599228	6905094	0	+	0.489796	(0.459,0.49]	chr12	629348	36	INTRON	INTRON	PRPF40B	ENSG00000110844.14	ENST00000547764.1:ENST00000551063.5:ENST00000527253.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	5.49862	5.521155	5.54369	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	47517763	47517862	6604752	0	-	0.515152	(0.49,0.526]	chr11	601342	105	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.35492	5.52104	5.68716	1.0002e-6	3.37299e-8	7.00342e-5	3.12343e-6
chr13	33323325	33323425	7483321	0	-	0.5	(0.49,0.526]	chr13	689281	377	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000567873.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.35492	5.52104	5.68716	1.0002e-6	3.37299e-8	7.00342e-5	3.12343e-6
chr17	31958861	31958960	8697855	0	+	0.525253	(0.49,0.526]	chr17	823660	108	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.35492	5.52104	5.68716	1.0002e-6	3.37299e-8	7.00342e-5	3.12343e-6
chr5	38832188	38832288	3446850	0	-	0.52	(0.49,0.526]	chr5	317213	91	INTRON	INTRON	OSMR-DT	ENSG00000249740.4	ENST00000662290.1:ENST00000636516.2:ENST00000685305.1:ENST00000513480.1:ENST00000688648.1:ENST00000654447.1:ENST00000660306.1	lncRNA	lncRNA	lncRNA	lncRNA	5	85	2	4.8652	5.520245	6.17529	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	202033854	202033953	1265888	0	+	0.838384	(0.629,1]	chr2	131941	1	UTR5	UTR5:EXON_MRNA	FZD7	ENSG00000155760.3	ENST00000286201.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	5.49097	5.51947	5.54797	9.87659e-8	5.19015e-8	8.31085e-6	4.6354e-6
chr2	222870654	222870753	1319400	0	+	0.434343	(0.424,0.459]	chr2	136501	47	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	4.87285	5.518375	6.1639	2.03044e-8	1.54441e-10	1.97932e-6	2.03038e-8
chr20	35546816	35546911	9637137	0	+	0.431579	(0.424,0.459]	chr20	951573	16	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	4.87285	5.518375	6.1639	2.03044e-8	1.54441e-10	1.97932e-6	2.03038e-8
chr6	5180608	5180707	3996387	0	-	0.565657	(0.526,0.57]	chr6	362049	360	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	4.80359	5.518235	6.23288	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	44775834	44775933	135892	0	+	0.646465	(0.629,1]	chr1	16491	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1:ENST00000485390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	788	2	5.1301	5.51819	5.90628	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	169744431	169744531	1202397	0	+	0.46	(0.459,0.49]	chr2	126060	25	INTRON	INTRON	KLHL23	ENSG00000213160.10	ENST00000498202.6:ENST00000272797.8:ENST00000602521.1:ENST00000392647.7:ENST00000437875.1:ENST00000494387.1:ENST00000448589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	4.65177	5.517645	6.38352	5.56898e-8	1.10534e-12	5.02653e-6	1.89699e-10
chr1	1317999	1318060	492196	0	-	0.491803	(0.49,0.526]	chr1	52353	1	SS3_PROX	SS3_PROX:INTRON	INTS11:ENSG00000240731	ENSG00000127054.22:ENSG00000240731.1	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1:ENST00000444968.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	34	2	4.69672	5.516954999999999	6.33719	2.25376e-8	1e-12	2.16877e-6	1.73382e-10
chr11	65423072	65423172	6415871	0	+	0.65	(0.629,1]	chr11	577189	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	1021	25946	2	5.47296	5.516909999999999	5.56086	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	86934750	86934849	4764937	0	-	0.474747	(0.459,0.49]	chr7	426724	75	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.4806	5.51494	5.54928	4.11395e-7	2.53394e-7	3.09732e-5	1.97194e-5
chr1	224191156	224191256	440592	0	+	0.47	(0.459,0.49]	chr1	47529	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	4.4955	5.51473	6.53396	5.33756e-7	1e-12	3.92587e-5	1.73382e-10
chr15	80977038	80977137	8257422	0	-	0.646465	(0.629,1]	chr15	766498	14	UTR3	UTR3:EXON_MRNA:INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000560244.5:ENST00000560189.1:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	5.02135	5.51304	6.00473	9.70346e-6	8.76691e-11	5.37523e-4	1.18784e-8
chr19	56288380	56288479	9542515	0	-	0.555556	(0.526,0.57]	chr19	944356	41	INTRON	INTRON	ZSCAN5A	ENSG00000131848.10	ENST00000683990.1:ENST00000587340.5:ENST00000587492.5:ENST00000593106.5:ENST00000592509.5:ENST00000588955.5:ENST00000588442.5:ENST00000592679.5:ENST00000590675.1:ENST00000591078.5:ENST00000589279.5:ENST00000585670.5:ENST00000587075.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	5.48168	5.5121	5.54252	2.6732e-7	1.66713e-7	2.09843e-5	1.36401e-5
chr1	44017232	44017332	591182	0	-	0.7	(0.629,1]	chr1	66527	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6:ENST00000492434.6:ENST00000528803.1:ENST00000489764.1:ENST00000466926.1:ENST00000533007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	5.08658	5.509755	5.93293	5.52146e-6	2.80251e-10	3.23814e-4	3.54906e-8
chr8	123273050	123273149	5266206	0	-	0.494949	(0.49,0.526]	chr8	470432	53	INTRON	INTRON	ZHX1	ENSG00000165156.15	ENST00000297857.3:ENST00000395571.8:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	117	2	4.89038	5.509095	6.12781	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	54529414	54529514	1033859	0	+	0.54	(0.526,0.57]	chr2	110784	8	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	4.95957	5.508705	6.05784	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	159865515	159865614	314194	0	+	0.484848	(0.459,0.49]	chr1	35044	46	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272668	ENSG00000272668.2	ENST00000608430.2	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	5.33218	5.50808	5.68398	1.78412e-6	5.57196e-8	1.1709e-4	4.89622e-6
chr7	75373315	75373414	4433498	0	+	0.474747	(0.459,0.49]	chr7	398712	58	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	5.33218	5.50808	5.68398	1.78412e-6	5.57196e-8	1.1709e-4	4.89622e-6
chr12	113182830	113182928	7285864	0	-	0.479592	(0.459,0.49]	chr12	672022	14	INTRON	INTRON	DDX54	ENSG00000123064.13	ENST00000306014.10:ENST00000314045.11:ENST00000551344.1:ENST00000552375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.40069	5.507925	5.61516	1.15324e-6	9.49302e-8	7.95154e-5	8.06088e-6
chr7	45762735	45762834	4712661	0	-	0.484848	(0.459,0.49]	chr7	422510	32	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000398921.6:ENST00000450436.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	20	2	5.40069	5.507925	5.61516	1.15324e-6	9.49302e-8	7.95154e-5	8.06088e-6
chr12	118304457	118304557	7295754	0	-	0.3	[0,0.32]	chr12	672987	69	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.36319	5.50719	5.65119	1.13263e-5	1.20332e-6	6.25152e-4	8.2089e-5
chr14	61726276	61726348	7647037	0	+	0.319444	[0,0.32]	chr14	703714	2	SS3_PROX	SS3_PROX:INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000553999.5:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5:ENST00000557206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.36319	5.50719	5.65119	1.13263e-5	1.20332e-6	6.25152e-4	8.2089e-5
chr22	50410663	50410762	9977089	0	+	0.272727	[0,0.32]	chr22	992691	34	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.36319	5.50719	5.65119	1.13263e-5	1.20332e-6	6.25152e-4	8.2089e-5
chr3	177194418	177194515	2499975	0	-	0.278351	[0,0.32]	chr3	239267	4	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	5.36319	5.50719	5.65119	1.13263e-5	1.20332e-6	6.25152e-4	8.2089e-5
chr9	77994724	77994824	5638501	0	-	0.3	[0,0.32]	chr9	505007	720	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.36319	5.50719	5.65119	1.13263e-5	1.20332e-6	6.25152e-4	8.2089e-5
chr7	27570990	27571090	4666208	0	-	0.29	[0,0.32]	chr7	419176	275	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	4.96539	5.5071650000000005	6.04894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	60426163	60426263	7390206	0	+	0.29	[0,0.32]	chr13	682822	230	INTRON	INTRON	TDRD3	ENSG00000083544.16	ENST00000196169.7:ENST00000484389.6:ENST00000377894.6:ENST00000377881.8:ENST00000648252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.43357	5.507065	5.58056	8.40147e-6	1.7046e-6	4.71048e-4	1.13343e-4
chr5	108764692	108764792	3267917	0	+	0.22	[0,0.32]	chr5	301157	153	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000509035.5:ENST00000281092.9:ENST00000513676.5:ENST00000504143.6:ENST00000502752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	5.43357	5.507065	5.58056	8.40147e-6	1.7046e-6	4.71048e-4	1.13343e-4
chr5	119334330	119334430	3292431	0	+	0.26	[0,0.32]	chr5	302624	3	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.43357	5.507065	5.58056	8.40147e-6	1.7046e-6	4.71048e-4	1.13343e-4
chr2	182368390	182368490	1635905	0	-	0.34	(0.32,0.36]	chr2	168577	1036	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	94	2	5.01296	5.507059999999999	6.00116	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	44985065	44985164	1856511	0	+	0.535354	(0.526,0.57]	chr3	187876	73	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000477865.1:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000467846.5:ENST00000491476.5:ENST00000481405.1:ENST00000498168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	4.69612	5.50702	6.31792	1.35215e-8	2.00417e-12	1.35132e-6	3.33638e-10
chr11	63655268	63655368	6619097	0	-	0.54	(0.526,0.57]	chr11	604510	23	INTRON	INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.3474	5.506435	5.66547	1.05485e-6	4.05077e-8	7.33447e-5	3.67181e-6
chr11	118513778	118513876	6508602	0	+	0.540816	(0.526,0.57]	chr11	589037	19	UTR3	UTR3:EXON_MRNA:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000686370.1:ENST00000685397.1:ENST00000649878.2:ENST00000648565.1:ENST00000527839.2:ENST00000686588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.40811	5.506315	5.60452	6.86579e-7	6.77869e-8	4.92496e-5	5.95616e-6
chr16	89411549	89411649	8623960	0	-	0.53	(0.526,0.57]	chr16	813728	74	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.40811	5.506315	5.60452	6.86579e-7	6.77869e-8	4.92496e-5	5.95616e-6
chr10	74423074	74423174	5897442	0	+	0.51	(0.49,0.526]	chr10	529777	241	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	124	2	5.48845	5.505965	5.52348	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	226374925	226375020	872430	0	-	0.410526	(0.392,0.424]	chr1	97240	7	EXON_MRNA	EXON_MRNA:INTRON	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	5.11125	5.505145000000001	5.89904	3.31137e-5	2.16736e-8	0.00159224	2.09062e-6
chr17	37309159	37309259	8918685	0	-	0.41	(0.392,0.424]	chr17	855228	95	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	5.11125	5.505145000000001	5.89904	3.31137e-5	2.16736e-8	0.00159224	2.09062e-6
chr1	92364265	92364365	232957	0	+	0.36	(0.32,0.36]	chr1	23273	180	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	4.60169	5.50497	6.40825	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	151293943	151294043	3058776	0	-	0.47	(0.459,0.49]	chr4	283919	278	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	4.61869	5.50495	6.39121	1.26997e-7	1e-12	1.06312e-5	1.73382e-10
chr1	39129193	39129293	112102	0	+	0.4	(0.392,0.424]	chr1	12882	231	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	5.1781	5.504759999999999	5.83142	2.48959e-5	3.48252e-8	0.00122627	3.23132e-6
chr15	33919935	33920035	8122113	0	-	0.42	(0.392,0.424]	chr15	751353	343	INTRON	INTRON	AVEN	ENSG00000169857.9	ENST00000675287.1:ENST00000306730.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	5.1781	5.504759999999999	5.83142	2.48959e-5	3.48252e-8	0.00122627	3.23132e-6
chr16	80759203	80759303	8607742	0	-	0.33	(0.32,0.36]	chr16	811546	242	INTRON	INTRON	CDYL2	ENSG00000166446.15	ENST00000570137.7:ENST00000562812.5:ENST00000563890.5:ENST00000566173.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.03749	5.503375	5.96926	9.65678e-5	3.15048e-8	0.00399919	2.93512e-6
chr2	148080058	148080158	1164761	0	+	0.36	(0.32,0.36]	chr2	123785	81	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	5.03749	5.503375	5.96926	9.65678e-5	3.15048e-8	0.00399919	2.93512e-6
chr5	138862784	138862884	3332182	0	+	0.34	(0.32,0.36]	chr5	305849	347	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	5.03749	5.503375	5.96926	9.65678e-5	3.15048e-8	0.00399919	2.93512e-6
chr12	57698671	57698771	6925714	0	+	0.51	(0.49,0.526]	chr12	633803	19	INTRON	INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	5.28142	5.5033449999999995	5.72527	2.46593e-6	1.60521e-8	1.54892e-4	1.5647e-6
chr3	48710769	48710866	2271031	0	-	0.515464	(0.49,0.526]	chr3	220338	22	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	5.28142	5.5033449999999995	5.72527	2.46593e-6	1.60521e-8	1.54892e-4	1.5647e-6
chr3	123075272	123075372	1968616	0	+	0.51	(0.49,0.526]	chr3	198453	73	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	5.28142	5.5033449999999995	5.72527	2.46593e-6	1.60521e-8	1.54892e-4	1.5647e-6
chr13	110900029	110900129	7566813	0	-	0.33	(0.32,0.36]	chr13	696133	1	SS5_PROX	SS5_PROX:INTRON	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	5.13957	5.5027	5.86583	6.71414e-5	6.04906e-8	0.00291649	5.40424e-6
chr17	40041736	40041835	8927802	0	-	0.343434	(0.32,0.36]	chr17	856777	52	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000428757.6:ENST00000580008.5:ENST00000479829.5:ENST00000543759.6:ENST00000585306.5:ENST00000537674.6:ENST00000582023.5:ENST00000580517.5:ENST00000578161.2:ENST00000581054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.13957	5.5027	5.86583	6.71414e-5	6.04906e-8	0.00291649	5.40424e-6
chr22	41103546	41103646	9951114	0	+	0.35	(0.32,0.36]	chr22	989833	101	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.13957	5.5027	5.86583	6.71414e-5	6.04906e-8	0.00291649	5.40424e-6
chr5	95549599	95549695	3550838	0	-	0.34375	(0.32,0.36]	chr5	323363	5	INTRON	INTRON	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000514952.5:ENST00000513823.5:ENST00000510228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	5.13957	5.5027	5.86583	6.71414e-5	6.04906e-8	0.00291649	5.40424e-6
chr5	151798488	151798581	3360474	0	+	0.333333	(0.32,0.36]	chr5	309123	7	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000679207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.13957	5.5027	5.86583	6.71414e-5	6.04906e-8	0.00291649	5.40424e-6
chr1	44871101	44871200	593640	0	-	0.343434	(0.32,0.36]	chr1	66814	76	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000486491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	5.13625	5.50104	5.86583	6.04906e-8	7.13152e-9	5.40424e-6	7.41948e-7
chr2	131726194	131726293	1147429	0	+	0.323232	(0.32,0.36]	chr2	122821	32	INTRON	INTRON	NBEAP2	ENSG00000197927.13	ENST00000623058.3	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	20	2	5.13625	5.50104	5.86583	6.04906e-8	7.13152e-9	5.40424e-6	7.41948e-7
chr2	218555911	218556011	1697401	0	-	0.35	(0.32,0.36]	chr2	174259	18	INTRON	INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5:ENST00000338465.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.85094	5.500885	6.15083	2.73185e-7	1.52443e-9	2.11622e-5	1.74447e-7
chrX	73826992	73827091	10373477	0	-	0.434343	(0.424,0.459]	chrX	1029941	65	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	8	101	2	5.21467	5.499245	5.78382	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59624387	59624487	3478495	0	-	0.46	(0.459,0.49]	chr5	319265	380	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	84	2	5.30263	5.498725	5.69482	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	154316463	154316563	2475767	0	-	0.25	[0,0.32]	chr3	237409	3	SS3_PROX	SS3_PROX:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000491011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	4.53638	5.498025	6.45967	8.41855e-6	2.0258e-11	4.71048e-4	2.97161e-9
chrX	2364576	2364676	10252292	0	-	0.27	[0,0.32]	chrX	1021537	262	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.53638	5.498025	6.45967	8.41855e-6	2.0258e-11	4.71048e-4	2.97161e-9
chr6	165982007	165982107	4270574	0	-	0.39	(0.36,0.392]	chr6	386948	317	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	5.36786	5.4978549999999995	5.62785	5.69775e-7	7.7117e-11	4.16055e-5	1.05061e-8
chr10	119587255	119587354	6273225	0	-	0.444444	(0.424,0.459]	chr10	561324	43	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000412524.5:ENST00000369086.1:ENST00000462373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	5.39927	5.497075	5.59488	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	154262521	154262602	303734	0	+	0.444444	(0.424,0.459]	chr1	32726	5	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000475373.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.37155	5.496665	5.62178	2.42251e-6	2.83203e-7	1.53938e-4	2.17914e-5
chr11	13409144	13409244	6569238	0	-	0.45	(0.424,0.459]	chr11	597071	29	INTRON	INTRON	BTBD10	ENSG00000148925.11	ENST00000278174.10:ENST00000527102.6:ENST00000530907.5:ENST00000528120.5:ENST00000525864.5:ENST00000525661.5:ENST00000525108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	5.37155	5.496665	5.62178	2.42251e-6	2.83203e-7	1.53938e-4	2.17914e-5
chr12	20458603	20458703	6842950	0	+	0.45	(0.424,0.459]	chr12	625044	880	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	5.37155	5.496665	5.62178	2.42251e-6	2.83203e-7	1.53938e-4	2.17914e-5
chr4	1897250	1897348	2544868	0	+	0.428571	(0.424,0.459]	chr4	244552	30	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5:ENST00000515806.1:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	5.45551	5.496555000000001	5.5376	1.50668e-6	4.83052e-7	9.96778e-5	3.58077e-5
chr4	186694076	186694176	3106213	0	-	0.44	(0.424,0.459]	chr4	287626	301	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.45551	5.496555000000001	5.5376	1.50668e-6	4.83052e-7	9.96778e-5	3.58077e-5
chr17	37459883	37459983	8707199	0	+	0.5	(0.49,0.526]	chr17	825051	9	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	4.88635	5.49611	6.10587	1.46599e-9	6.5597e-11	1.70181e-7	9.0398e-9
chr8	43112343	43112443	4978959	0	+	0.35	(0.32,0.36]	chr8	446832	21	INTRON	INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	5.02236	5.4958100000000005	5.96926	3.15048e-8	1.56263e-8	2.93512e-6	1.54408e-6
chr4	183856241	183856341	2805689	0	+	0.42	(0.392,0.424]	chr4	265321	20	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	5.03147	5.494825	5.95818	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	172701355	172701455	2498079	0	-	0.43	(0.424,0.459]	chr3	239091	529	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	5.45043	5.494015	5.5376	4.83052e-7	1.37268e-12	3.58077e-5	2.33094e-10
chr12	116142091	116142191	7290340	0	-	0.37	(0.36,0.392]	chr12	672490	302	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.96718	5.492145	6.01711	1.24104e-4	9.48035e-9	0.0049353	9.6816e-7
chr3	78796600	78796700	2350441	0	-	0.37	(0.36,0.392]	chr3	227137	493	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.96718	5.492145	6.01711	1.24104e-4	9.48035e-9	0.0049353	9.6816e-7
chr6	89159637	89159734	3832536	0	+	0.381443	(0.36,0.392]	chr6	351263	8	INTRON	INTRON	PM20D2	ENSG00000146281.6	ENST00000275072.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.96718	5.492145	6.01711	1.24104e-4	9.48035e-9	0.0049353	9.6816e-7
chr21	39211981	39212073	9881254	0	-	0.380435	(0.36,0.392]	chr21	979838	7	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1:ENST00000473813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.03921	5.491569999999999	5.94393	9.59768e-5	1.58245e-8	0.00399331	1.55285e-6
chr3	33593189	33593286	2231269	0	-	0.391753	(0.36,0.392]	chr3	215919	3	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.03921	5.491569999999999	5.94393	9.59768e-5	1.58245e-8	0.00399331	1.55285e-6
chr3	113749122	113749222	1957100	0	+	0.39	(0.36,0.392]	chr3	197069	16	INTRON	INTRON	ATP6V1A	ENSG00000114573.10	ENST00000462855.1:ENST00000273398.8:ENST00000470455.5:ENST00000496747.5:ENST00000475322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.03921	5.491569999999999	5.94393	9.59768e-5	1.58245e-8	0.00399331	1.55285e-6
chr8	99475114	99475214	5043955	0	+	0.3	[0,0.32]	chr8	452327	71	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	4.31876	5.491345	6.66393	5.15904e-5	1e-12	0.00235512	1.73382e-10
chr9	128167318	128167395	5744509	0	-	0.519481	(0.49,0.526]	chr9	515036	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000485862.5:ENST00000538431.5:ENST00000357558.9:ENST00000461765.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000485001.1:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	4.87423	5.49005	6.10587	6.5597e-11	1e-12	9.0398e-9	1.72912e-10
chr19	43668415	43668511	9506533	0	-	0.583333	(0.57,0.629]	chr19	937278	2	INTRON	INTRON	PLAUR	ENSG00000011422.12	ENST00000339082.7:ENST00000340093.8:ENST00000601723.5:ENST00000221264.8:ENST00000597107.1:ENST00000598875.1:ENST00000601876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	5.05168	5.489825	5.92797	5.44088e-10	2.19001e-11	6.64169e-8	3.20912e-9
chr2	121654504	121654604	1137552	0	+	0.32	[0,0.32]	chr2	121669	16	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	1	19	2	5.04231	5.489364999999999	5.93642	3.87502e-8	3.40623e-8	3.55241e-6	3.14246e-6
chr19	45304987	45305086	9362791	0	+	0.535354	(0.526,0.57]	chr19	911022	24	UTR3	UTR3:EXON_MRNA	MARK4	ENSG00000007047.16	ENST00000262891.9:ENST00000300843.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.25987	5.488795	5.71772	2.82947e-6	1.72001e-8	1.75466e-4	1.66972e-6
chr1	38993194	38993293	111391	0	+	0.424242	(0.392,0.424]	chr1	12817	12	INTRON	INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.81758	5.48781	6.15804	6.29448e-8	6.43194e-10	5.585e-6	7.74888e-8
chr5	59078988	59079088	3473016	0	-	0.41	(0.392,0.424]	chr5	319172	396	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	4.81758	5.48781	6.15804	6.29448e-8	6.43194e-10	5.585e-6	7.74888e-8
chr17	43282754	43282854	8938289	0	-	0.47	(0.459,0.49]	chr17	859071	526	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	303	2	5.46471	5.487045	5.50938	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	58899390	58899490	7184144	0	-	0.31	[0,0.32]	chr12	663683	82	INTRON	INTRON	LRIG3	ENSG00000139263.12	ENST00000379141.8:ENST00000320743.8:ENST00000433272.6:ENST00000552267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	88	2	5.34393	5.48625	5.62857	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	204474371	204474470	842923	0	-	0.484848	(0.459,0.49]	chr1	93787	41	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000415899.2:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	5.07754	5.484245	5.89095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	47417028	47417127	1021581	0	+	0.444444	(0.424,0.459]	chr2	110084	2	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	4.61423	5.484125000000001	6.35402	4.85762e-7	6.61571e-12	3.605e-5	1.03402e-9
chr1	211310569	211310668	423686	0	+	0.30303	[0,0.32]	chr1	45628	61	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1:ENST00000486666.5:ENST00000528066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	89	2	5.00567	5.48366	5.96165	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	22464413	22464513	7107563	0	-	0.41	(0.392,0.424]	chr12	653373	6	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000539615.1	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	5.18764	5.482794999999999	5.77795	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	100027747	100027846	1937064	0	+	0.40404	(0.392,0.424]	chr3	195327	18	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	54	2	5.17459	5.482415	5.79024	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	36772709	36772801	9737535	0	-	0.369565	(0.36,0.392]	chr20	964437	9	INTRON	INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	81	2	5.31139	5.482200000000001	5.65301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	44510525	44510624	7962724	0	+	0.333333	(0.32,0.36]	chr15	736701	68	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	5.29318	5.48204	5.6709	1.5251e-5	1.02884e-12	8.01855e-4	1.77613e-10
chr5	134772297	134772396	3321915	0	+	0.424242	(0.392,0.424]	chr5	305003	9	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	5.13089	5.481154999999999	5.83142	3.48252e-8	1.3052e-9	3.23132e-6	1.52229e-7
chr1	93320005	93320104	695448	0	-	0.353535	(0.32,0.36]	chr1	75327	14	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000429859.5:ENST00000424517.3:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000436200.2:ENST00000670231.1:ENST00000432741.5	lncRNA	lncRNA	lncRNA	lncRNA	1	20	2	4.68389	5.47928	6.27467	1.67087e-6	2.42526e-10	1.09706e-4	3.09612e-8
chr11	73525761	73525861	6645277	0	-	0.36	(0.32,0.36]	chr11	609053	569	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.68389	5.47928	6.27467	1.67087e-6	2.42526e-10	1.09706e-4	3.09612e-8
chr1	36037349	36037446	107795	0	+	0.453608	(0.424,0.459]	chr1	12263	7	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.18388	5.477365000000001	5.77085	1.21594e-5	5.32819e-8	6.58699e-4	4.72329e-6
chrX	129985454	129985553	10223642	0	+	0.454545	(0.424,0.459]	chrX	1018147	23	INTRON	INTRON	BCORL1	ENSG00000085185.16	ENST00000607874.1:ENST00000488135.6:ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.18388	5.477365000000001	5.77085	1.21594e-5	5.32819e-8	6.58699e-4	4.72329e-6
chrX	129985553	129985653	10223643	0	+	0.45	(0.424,0.459]	chrX	1018147	24	INTRON	INTRON	BCORL1	ENSG00000085185.16	ENST00000607874.1:ENST00000488135.6:ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.18388	5.477365000000001	5.77085	1.21594e-5	5.32819e-8	6.58699e-4	4.72329e-6
chr5	79203846	79203946	3518761	0	-	0.45	(0.424,0.459]	chr5	321715	821	INTRON	INTRON	DMGDH	ENSG00000132837.15	ENST00000520388.5:ENST00000518707.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	5.26756	5.477029999999999	5.6865	8.0232e-6	9.64047e-8	4.54299e-4	8.13052e-6
chr13	40916751	40916850	7499473	0	-	0.353535	(0.32,0.36]	chr13	690242	82	INTRON	INTRON	TPTE2P5	ENSG00000168852.13	ENST00000652519.1:ENST00000379515.3:ENST00000633547.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	22	2	5.39576	5.476165	5.55657	9.86331e-6	2.228e-12	5.39872e-4	3.70774e-10
chr18	9145258	9145358	9055124	0	+	0.37	(0.36,0.392]	chr18	875173	70	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	5.43936	5.475705	5.51205	3.42448e-6	2.39077e-6	2.10826e-4	1.5204e-4
chr3	57595382	57595481	2296625	0	-	0.383838	(0.36,0.392]	chr3	224650	106	INTRON	INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	5.43936	5.475705	5.51205	3.42448e-6	2.39077e-6	2.10826e-4	1.5204e-4
chr4	163903043	163903143	3073268	0	-	0.3	[0,0.32]	chr4	284873	485	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000510696.1:ENST00000503104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	4.8652	5.47563	6.08606	4.11137e-4	5.85315e-9	0.0138446	6.18098e-7
chr12	56218107	56218206	7176248	0	-	0.525253	(0.49,0.526]	chr12	661561	11	INTRON	INTRON	RNF41	ENSG00000181852.18	ENST00000345093.9:ENST00000615206.4:ENST00000394013.6:ENST00000547967.5:ENST00000552656.5:ENST00000551711.5:ENST00000552244.5:ENST00000549038.5:ENST00000548225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.85538	5.47528	6.09518	6.26806e-5	1.11716e-10	0.00277665	1.47877e-8
chr6	20180353	20180453	4017393	0	-	0.54	(0.526,0.57]	chr6	363599	272	INTRON	INTRON	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	5.31418	5.474925000000001	5.63567	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	235169349	235169448	890275	0	-	0.525253	(0.49,0.526]	chr1	99176	3	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.92941	5.47456	6.01971	4.32628e-5	2.59274e-10	0.00200309	3.28602e-8
chr17	80578757	80578857	8814673	0	+	0.66	(0.629,1]	chr17	840381	326	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	5.39999	5.47398	5.54797	2.69914e-7	5.19015e-8	2.1149e-5	4.6354e-6
chr4	163684726	163684826	3071082	0	-	0.25	[0,0.32]	chr4	284859	710	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000274056.11:ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000510696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	5.10715	5.473694999999999	5.84024	7.53496e-5	1.72569e-7	0.00322158	1.40017e-5
chr19	45841261	45841358	9514162	0	-	0.494845	(0.49,0.526]	chr19	938682	23	INTRON	INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5:ENST00000593899.5:ENST00000601582.1:ENST00000596518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	5.04178	5.473660000000001	5.90554	1.57703e-5	1.93601e-9	8.20905e-4	2.18285e-7
chr15	76939215	76939315	8045774	0	+	0.15	[0,0.32]	chr15	743439	4	SS5_PROX	SS5_PROX:INTRON	RCN2	ENSG00000117906.14	ENST00000320963.9:ENST00000394885.8:ENST00000394883.3:ENST00000557805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.1772	5.47332	5.76944	5.87341e-5	2.56854e-7	0.00262682	2.02856e-5
chr17	43137361	43137459	8719532	0	+	0.306122	[0,0.32]	chr17	827840	39	INTRON	INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000356906.7:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	5.1772	5.47332	5.76944	5.87341e-5	2.56854e-7	0.00262682	2.02856e-5
chr4	24566867	24566966	2865579	0	-	0.252525	[0,0.32]	chr4	270093	101	INTRON	INTRON	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.1772	5.47332	5.76944	5.87341e-5	2.56854e-7	0.00262682	2.02856e-5
chr7	105053188	105053287	4502613	0	+	0.292929	[0,0.32]	chr7	405607	118	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000474203.5:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.1772	5.47332	5.76944	5.87341e-5	2.56854e-7	0.00262682	2.02856e-5
chr7	133535921	133536020	4553607	0	+	0.30303	[0,0.32]	chr7	409402	519	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	5.1772	5.47332	5.76944	5.87341e-5	2.56854e-7	0.00262682	2.02856e-5
chr1	95156818	95156918	239040	0	+	0.45	(0.424,0.459]	chr1	24040	50	INTRON	INTRON	TLCD4	ENSG00000152078.10	ENST00000370203.9:ENST00000456991.5:ENST00000455656.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	5.44826	5.471555	5.49485	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	69968919	69969019	7682730	0	+	0.45	(0.424,0.459]	chr14	706220	150	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4:ENST00000553839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	5.15612	5.47151	5.7869	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	33313353	33313453	5368280	0	+	0.37	(0.36,0.392]	chr9	479308	3	SS3_PROX	SS3_PROX:INTRON	NFX1	ENSG00000086102.19	ENST00000379521.8:ENST00000379540.8:ENST00000318524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	5.14813	5.47133	5.79453	9.49031e-8	2.64969e-9	8.06088e-6	2.94929e-7
chr8	94993837	94993937	5026832	0	+	0.3	[0,0.32]	chr8	451410	46	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	5.10019	5.470215	5.84024	1.72569e-7	9.14777e-9	1.40017e-5	9.40372e-7
chr1	246226124	246226224	915717	0	-	0.41	(0.392,0.424]	chr1	100961	325	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	4.36677	5.467395	6.56802	8.10105e-6	1e-12	4.57465e-4	1.72912e-10
chr14	23308965	23309060	7574177	0	+	0.589474	(0.57,0.629]	chr14	697523	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	266	2	5.18037	5.467145	5.75392	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	48755581	48755680	2271456	0	-	0.373737	(0.36,0.392]	chr3	220409	29	INTRON	INTRON	PRKAR2A	ENSG00000114302.16	ENST00000265563.13:ENST00000454963.5:ENST00000296446.12:ENST00000437821.2:ENST00000438535.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.72821	5.46563	6.20305	6.09158e-4	4.41027e-10	0.0188826	5.4191e-8
chr20	36125727	36125827	9639526	0	+	0.52	(0.49,0.526]	chr20	951889	2	SS5_PROX	SS5_PROX:INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5:ENST00000427533.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.59165	5.46442	6.33719	8.79223e-8	1e-12	7.5628e-6	1.73382e-10
chr7	139246370	139246470	4566805	0	+	0.35	(0.32,0.36]	chr7	410317	89	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.32952	5.463979999999999	6.59844	0.00388505	2.46503e-12	0.0816719	4.05946e-10
chr1	54221529	54221628	151679	0	+	0.585859	(0.57,0.629]	chr1	18455	7	INTRON	INTRON	MRPL37	ENSG00000116221.15	ENST00000605337.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	4.3934	5.4630600000000005	6.53272	1.85634e-10	1e-12	2.40867e-8	1.73382e-10
chr4	182332651	182332751	2797405	0	+	0.39	(0.36,0.392]	chr4	264806	80	INTRON	INTRON	TENM3	ENSG00000218336.9	ENST00000513201.1:ENST00000512480.5:ENST00000511685.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	5.2225	5.46162	5.70074	2.06042e-5	3.77982e-7	0.00103061	2.84782e-5
chr17	39504427	39504526	8711040	0	+	0.373737	(0.36,0.392]	chr17	825646	26	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.29492	5.461385	5.62785	1.51392e-5	5.69775e-7	7.85619e-4	4.16055e-5
chr20	50523782	50523882	9670681	0	+	0.39	(0.36,0.392]	chr20	955818	128	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.29492	5.461385	5.62785	1.51392e-5	5.69775e-7	7.85619e-4	4.16055e-5
chr4	39772333	39772433	2608210	0	+	0.39	(0.36,0.392]	chr4	249783	162	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	5.29492	5.461385	5.62785	1.51392e-5	5.69775e-7	7.85619e-4	4.16055e-5
chr7	10998246	10998346	4309307	0	+	0.38	(0.36,0.392]	chr7	390413	70	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000476009.5:ENST00000490957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.29492	5.461385	5.62785	1.51392e-5	5.69775e-7	7.85619e-4	4.16055e-5
chr7	65755435	65755525	4397238	0	+	0.4	(0.392,0.424]	chr7	396278	3	SS3_PROX	SS3_PROX:INTRON	CCT6P1	ENSG00000228409.7	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	49	2	4.8005	5.461015	6.12153	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	158932563	158932660	4600709	0	+	0.525773	(0.49,0.526]	chr7	414325	17	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	5.35492	5.459545	5.56417	1.0002e-6	1.40942e-7	7.00342e-5	1.1686e-5
chr1	36014548	36014647	107565	0	+	0.494949	(0.49,0.526]	chr1	12245	1	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.42971	5.459465	5.48922	5.89334e-7	2.5213e-7	4.28084e-5	2.01203e-5
chr18	31940636	31940734	9205835	0	-	0.510204	(0.49,0.526]	chr18	886881	5	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000584876.1:ENST00000577426.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	5.42971	5.459465	5.48922	5.89334e-7	2.5213e-7	4.28084e-5	2.01203e-5
chr7	123700540	123700640	4837888	0	-	0.5	(0.49,0.526]	chr7	433218	34	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.42971	5.459465	5.48922	5.89334e-7	2.5213e-7	4.28084e-5	2.01203e-5
chr4	109722142	109722241	2994331	0	-	0.454545	(0.424,0.459]	chr4	280258	30	INTRON	INTRON	PLA2G12A	ENSG00000123739.11	ENST00000243501.10:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	5.09208	5.456765	5.82145	1.92567e-8	8.32489e-10	1.85307e-6	9.89956e-8
chr9	125838917	125839017	5488541	0	+	0.44	(0.424,0.459]	chr9	490720	411	INTRON	INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000491787.7:ENST00000447726.6:ENST00000673571.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	5.09208	5.456765	5.82145	1.92567e-8	8.32489e-10	1.85307e-6	9.89956e-8
chr1	167249639	167249738	327832	0	+	0.444444	(0.424,0.459]	chr1	36825	77	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	4.74933	5.456614999999999	6.1639	9.96009e-8	1.54441e-10	8.4812e-6	2.03038e-8
chrX	65517102	65517198	10362812	0	-	0.458333	(0.424,0.459]	chrX	1028959	18	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	4.64875	5.45542	6.26209	2.48943e-10	3.1274e-11	3.17004e-8	4.50988e-9
chr1	176175011	176175110	810578	0	-	0.393939	(0.392,0.424]	chr1	90169	59	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.32767	5.455405000000001	5.58314	5.95442e-6	7.33041e-7	3.4453e-4	5.19799e-5
chr2	28783163	28783263	970931	0	+	0.4	(0.392,0.424]	chr2	106090	3	SS5_PROX	SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000455580.5:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	5.32767	5.455405000000001	5.58314	5.95442e-6	7.33041e-7	3.4453e-4	5.19799e-5
chr6	20803533	20803633	3728483	0	+	0.41	(0.392,0.424]	chr6	338623	219	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.32767	5.455405000000001	5.58314	5.95442e-6	7.33041e-7	3.4453e-4	5.19799e-5
chr2	10619970	10620068	1378930	0	-	0.408163	(0.392,0.424]	chr2	142789	15	EXON_MRNA	EXON_MRNA:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.39479	5.4553	5.51581	4.26975e-6	1.07176e-6	2.57151e-4	7.36955e-5
chr6	15563144	15563244	4006909	0	-	0.4	(0.392,0.424]	chr6	362902	149	INTRON	INTRON	DTNBP1	ENSG00000047579.20	ENST00000344537.10:ENST00000462989.6:ENST00000622898.4:ENST00000355917.7:ENST00000510395.5:ENST00000515875.5:ENST00000513680.5:ENST00000338950.9:ENST00000506844.1:ENST00000511762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.39479	5.4553	5.51581	4.26975e-6	1.07176e-6	2.57151e-4	7.36955e-5
chr1	91849586	91849686	689106	0	-	0.37	(0.36,0.392]	chr1	74890	482	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	4.31565	5.455135	6.59462	1.47786e-7	1e-12	1.22253e-5	1.72912e-10
chrX	63741877	63741976	10358639	0	-	0.424242	(0.392,0.424]	chrX	1028784	44	INTRON	INTRON	ARHGEF9	ENSG00000131089.17	ENST00000374878.5:ENST00000671741.2:ENST00000253401.10:ENST00000374870.8:ENST00000671907.1:ENST00000624538.2:ENST00000672513.1:ENST00000638021.1:ENST00000636048.1:ENST00000637040.1:ENST00000637520.1:ENST00000672194.1:ENST00000639092.1:ENST00000637417.1:ENST00000637557.1:ENST00000437457.6:ENST00000623517.3:ENST00000495564.5:ENST00000624210.3:ENST00000635729.1:ENST00000637723.2:ENST00000637178.1:ENST00000374872.4:ENST00000635967.1:ENST00000624843.3:ENST00000636102.1:ENST00000636392.1:ENST00000636926.1:ENST00000636276.1:ENST00000672467.1:ENST00000623417.3:ENST00000625116.3:ENST00000623566.3:ENST00000624355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	5.16055	5.455135	5.74972	1.25981e-7	4.63789e-10	1.05791e-5	5.6824e-8
chr16	72087302	72087400	8587202	0	-	0.418367	(0.392,0.424]	chr16	810225	1	INTRON	INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5:ENST00000426362.6:ENST00000565171.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	4.70577	5.4549199999999995	6.20407	3.16586e-10	2.05488e-10	3.98256e-8	2.64594e-8
chr12	49599031	49599130	6905093	0	+	0.484848	(0.459,0.49]	chr12	629348	35	INTRON	INTRON	PRPF40B	ENSG00000110844.14	ENST00000547764.1:ENST00000551063.5:ENST00000527253.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	95	2	5.36644	5.454775	5.54311	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	68760819	68760916	6946273	0	+	0.309278	[0,0.32]	chr12	635935	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC35E3	ENSG00000175782.11	ENST00000673712.1:ENST00000674096.1:ENST00000319429.7:ENST00000398004.4:ENST00000431174.2:ENST00000538043.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	5.10715	5.4533249999999995	5.7995	7.53496e-5	1e-12	0.00322158	1.72912e-10
chr1	114713699	114713799	732536	0	-	0.36	(0.32,0.36]	chr1	78528	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr11	120479079	120479174	6513993	0	+	0.347368	(0.32,0.36]	chr11	590077	3	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000526067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr12	76818882	76818981	6961485	0	+	0.343434	(0.32,0.36]	chr12	637215	25	INTRON	INTRON	ZDHHC17	ENSG00000186908.15	ENST00000546778.5:ENST00000426126.7:ENST00000552453.5:ENST00000550876.1:ENST00000550163.5:ENST00000549944.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr17	60512343	60512442	8977814	0	-	0.343434	(0.32,0.36]	chr17	864784	115	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000588668.5:ENST00000585368.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr18	36007094	36007194	9211829	0	-	0.35	(0.32,0.36]	chr18	887226	134	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr2	151817296	151817396	1580871	0	-	0.33	(0.32,0.36]	chr2	163687	17	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7:ENST00000295087.13:ENST00000458140.6:ENST00000428992.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.29318	5.453215	5.61325	1.5251e-5	1.45077e-6	8.01855e-4	9.68953e-5
chr11	106864365	106864465	6730214	0	-	0.41	(0.392,0.424]	chr11	614108	535	INTRON	INTRON	GUCY1A2	ENSG00000152402.11	ENST00000526355.7:ENST00000282249.6:ENST00000347596.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	5.23647	5.4530650000000005	5.66966	2.4131e-10	1e-12	3.08506e-8	1.73382e-10
chr1	119102707	119102807	738381	0	-	0.33	(0.32,0.36]	chr1	79213	203	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.39576	5.453035	5.51031	9.86331e-6	2.41138e-6	5.39872e-4	1.53938e-4
chr2	117980908	117981007	1552933	0	-	0.343434	(0.32,0.36]	chr2	161077	25	INTRON	INTRON	CCDC93	ENSG00000125633.11	ENST00000319432.9:ENST00000376300.7:ENST00000460781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.39576	5.453035	5.51031	9.86331e-6	2.41138e-6	5.39872e-4	1.53938e-4
chr16	87865022	87865121	8619456	0	-	0.464646	(0.459,0.49]	chr16	812993	15	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	4.68823	5.45199	6.21575	2.91337e-11	6.23768e-12	4.19646e-9	9.83702e-10
chr15	84675725	84675825	8265014	0	-	0.28	[0,0.32]	chr15	767522	20	INTRON	INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	3.90753	5.45182	6.99611	1.07493e-6	1e-12	7.38792e-5	1.72912e-10
chr7	111348379	111348479	4817186	0	-	0.36	(0.32,0.36]	chr7	431926	3845	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	4.51391	5.451309999999999	6.38871	4.00732e-8	3.86634e-11	3.64474e-6	5.49052e-9
chr1	86739569	86739666	223905	0	+	0.43299	(0.424,0.459]	chr1	22648	10	INTRON	INTRON	SH3GLB1	ENSG00000097033.14	ENST00000616170.4:ENST00000535010.5:ENST00000370558.8:ENST00000482504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.65351	5.45111	6.24871	1.8873e-7	6.7358e-11	1.54537e-5	9.26681e-9
chr19	39452655	39452755	9347168	0	+	0.58	(0.57,0.629]	chr19	907645	63	INTRON	INTRON	SUPT5H	ENSG00000196235.14	ENST00000594990.5:ENST00000599117.5:ENST00000402194.6:ENST00000601515.5:ENST00000432763.7:ENST00000595368.5:ENST00000594729.5:ENST00000601978.1:ENST00000359191.10:ENST00000598725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	5.24671	5.44982	5.65293	2.15311e-6	2.31977e-8	1.3963e-4	2.19827e-6
chr5	172986445	172986544	3393202	0	+	0.464646	(0.459,0.49]	chr5	311326	21	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.04785	5.44974	5.85163	2.39418e-5	5.06515e-9	0.00119556	5.39084e-7
chr9	130696886	130696983	5514943	0	+	0.474227	(0.459,0.49]	chr9	495016	9	INTRON	INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000490641.5:ENST00000691162.1:ENST00000692554.1:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000463488.1:ENST00000688364.1:ENST00000689662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.04785	5.44974	5.85163	2.39418e-5	5.06515e-9	0.00119556	5.39084e-7
chr11	102184718	102184818	6479453	0	+	0.43	(0.424,0.459]	chr11	585360	218	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	5.37155	5.4496	5.52765	2.42251e-6	1e-12	1.53938e-4	1.72912e-10
chr9	37084392	37084492	5378864	0	+	0.39	(0.36,0.392]	chr9	480655	1	SS5_PROX	SS5_PROX:INTRON	EBLN3P	ENSG00000281649.3	ENST00000664037.1:ENST00000660341.1:ENST00000662098.2:ENST00000666604.1:ENST00000653711.1:ENST00000625445.1:ENST00000658888.2:ENST00000664088.2:ENST00000664382.1:ENST00000656197.1:ENST00000653587.1:ENST00000665375.1:ENST00000692373.1:ENST00000631093.1:ENST00000685288.1:ENST00000657640.1:ENST00000629870.2:ENST00000625218.1:ENST00000627197.1:ENST00000654889.1:ENST00000656730.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	5.10156	5.448835	5.79611	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	111320385	111320485	4816906	0	-	0.39	(0.36,0.392]	chr7	431926	3565	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	73	2	5.06508	5.44785	5.83062	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28558159	28558259	10006885	0	-	0.3	[0,0.32]	chr22	996542	1152	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	5.32706	5.446865000000001	5.56667	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	101838563	101838663	4493609	0	+	0.51	(0.49,0.526]	chr7	404874	192	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	5.28142	5.446745	5.61207	2.46593e-6	6.35974e-8	1.54892e-4	5.62451e-6
chr4	109060375	109060475	2990725	0	-	0.52	(0.49,0.526]	chr4	280109	98	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	4.79681	5.445995	6.09518	3.35573e-9	1.11716e-10	3.68324e-7	1.47877e-8
chr1	45609974	45610070	136844	0	+	0.416667	(0.392,0.424]	chr1	16792	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.85654	5.44544	6.03434	1.84333e-4	3.73254e-9	0.00688171	4.03186e-7
chr14	71634916	71635016	7688680	0	+	0.4	(0.392,0.424]	chr14	706625	103	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5:ENST00000555066.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.85654	5.44544	6.03434	1.84333e-4	3.73254e-9	0.00688171	4.03186e-7
chr3	188580765	188580865	2135283	0	+	0.42	(0.392,0.424]	chr3	209665	113	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000462758.1:ENST00000471917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.85654	5.44544	6.03434	1.84333e-4	3.73254e-9	0.00688171	4.03186e-7
chr4	67672048	67672144	2910889	0	-	0.40625	(0.392,0.424]	chr4	273924	11	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.85654	5.44544	6.03434	1.84333e-4	3.73254e-9	0.00688171	4.03186e-7
chr22	28453671	28453771	10005840	0	-	0.39	(0.36,0.392]	chr22	996542	107	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	5.26217	5.44501	5.62785	5.69775e-7	4.53146e-10	4.16055e-5	5.61917e-8
chr7	111272296	111272396	4816425	0	-	0.37	(0.36,0.392]	chr7	431926	3084	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	5.26217	5.44501	5.62785	5.69775e-7	4.53146e-10	4.16055e-5	5.61917e-8
chr12	48664434	48664532	7157938	0	-	0.540816	(0.526,0.57]	chr12	657613	14	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.3474	5.44496	5.54252	1.05485e-6	1.66713e-7	7.33447e-5	1.36401e-5
chr10	119077631	119077731	6272187	0	-	0.55	(0.526,0.57]	chr10	561112	33	INTRON	INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.40811	5.444895	5.48168	6.86579e-7	2.6732e-7	4.92496e-5	2.09843e-5
chr2	241754325	241754422	1365948	0	+	0.536082	(0.526,0.57]	chr2	141368	3	SS3_PROX	SS3_PROX:INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000432449.1:ENST00000467427.5:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	5.40811	5.444895	5.48168	6.86579e-7	2.6732e-7	4.92496e-5	2.09843e-5
chr2	160321826	160321926	1592245	0	-	0.38	(0.36,0.392]	chr2	164953	32	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000409972.5:ENST00000491781.5:ENST00000428519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	4.57244	5.44473	6.31702	2.92322e-6	7.38095e-11	1.80583e-4	1.00784e-8
chr19	13127125	13127225	9294020	0	+	0.48	(0.459,0.49]	chr19	898679	83	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.76501	5.44447	6.12393	1.46149e-4	1.31318e-10	0.00564049	1.71854e-8
chr1	167756773	167756873	330807	0	+	0.52	(0.49,0.526]	chr1	37064	342	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	4.69672	5.4419450000000005	6.18717	2.25376e-8	1.66076e-11	2.16877e-6	2.50009e-9
chr15	56982959	56983059	7983951	0	+	0.31	[0,0.32]	chr15	738460	615	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	5.30197	5.441265	5.58056	1.7046e-6	8.33093e-10	1.13343e-4	9.89956e-8
chr4	128157800	128157900	2738575	0	+	0.29	[0,0.32]	chr4	260353	341	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	5.30197	5.441265	5.58056	1.7046e-6	8.33093e-10	1.13343e-4	9.89956e-8
chr1	150845063	150845163	764063	0	-	0.48	(0.459,0.49]	chr1	82956	22	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6:ENST00000505979.5:ENST00000504358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.33218	5.44073	5.54928	1.78412e-6	2.53394e-7	1.1709e-4	1.97194e-5
chr17	82260730	82260829	9034210	0	-	0.464646	(0.459,0.49]	chr17	873278	48	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.33218	5.44073	5.54928	1.78412e-6	2.53394e-7	1.1709e-4	1.97194e-5
chr7	72991677	72991776	4729497	0	-	0.474747	(0.459,0.49]	chr7	424043	113	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	19	2	5.33218	5.44073	5.54928	1.78412e-6	2.53394e-7	1.1709e-4	1.97194e-5
chrX	17388320	17388420	10091187	0	+	0.49	(0.459,0.49]	chrX	1006577	116	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.33218	5.44073	5.54928	1.78412e-6	2.53394e-7	1.1709e-4	1.97194e-5
chr3	42789159	42789259	2248390	0	-	0.49	(0.459,0.49]	chr3	217238	26	INTRON	INTRON	HIGD1A	ENSG00000181061.14	ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5:ENST00000452906.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.40069	5.440645	5.4806	1.15324e-6	4.11395e-7	7.95154e-5	3.09732e-5
chr6	165374993	165375093	4264454	0	-	0.46	(0.459,0.49]	chr6	386712	311	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000649273.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000648884.1:ENST00000649761.1:ENST00000678161.1:ENST00000366882.7:ENST00000676767.1:ENST00000686660.1:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	5.40069	5.440645	5.4806	1.15324e-6	4.11395e-7	7.95154e-5	3.09732e-5
chr9	113932154	113932254	5469959	0	+	0.48	(0.459,0.49]	chr9	488547	554	INTRON	INTRON	ZNF618	ENSG00000157657.15	ENST00000615615.4:ENST00000288466.11:ENST00000374126.10:ENST00000374124.4:ENST00000452710.5:ENST00000481558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.40069	5.440645	5.4806	1.15324e-6	4.11395e-7	7.95154e-5	3.09732e-5
chr1	224256787	224256887	866564	0	-	0.47	(0.459,0.49]	chr1	96381	61	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000489194.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000496393.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	5.02728	5.439455000000001	5.85163	5.06515e-9	3.90202e-10	5.39084e-7	4.86489e-8
chr4	16234372	16234472	2579412	0	+	0.5	(0.49,0.526]	chr4	247737	68	INTRON	INTRON	TAPT1-AS1	ENSG00000263327.6	ENST00000573308.5:ENST00000573950.5:ENST00000570786.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	4.69166	5.439415	6.18717	1.66076e-11	3.86491e-12	2.50009e-9	6.23089e-10
chr5	124697114	124697214	3580773	0	-	0.43	(0.424,0.459]	chr5	325316	303	INTRON	INTRON	ZNF608	ENSG00000168916.16	ENST00000513986.2:ENST00000504926.5:ENST00000306315.9:ENST00000613878.4:ENST00000505686.5:ENST00000503896.6:ENST00000509799.5:ENST00000511308.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.96809	5.43702	5.90595	6.10851e-5	1.00338e-8	0.0027377	1.01215e-6
chr8	127821480	127821580	5088213	0	+	0.44	(0.424,0.459]	chr8	455244	12	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.96809	5.43702	5.90595	6.10851e-5	1.00338e-8	0.0027377	1.01215e-6
chr1	119727393	119727490	275760	0	+	0.319588	[0,0.32]	chr1	28443	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1:ENST00000641847.1:ENST00000641455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	85	2	5.17847	5.43696	5.69545	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	8396395	8396494	9278740	0	+	0.565657	(0.526,0.57]	chr19	895928	56	INTRON	INTRON	RAB11B	ENSG00000185236.12	ENST00000600719.5:ENST00000328024.11:ENST00000598706.1:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.69362	5.4365950000000005	6.17957	1.98837e-4	1.82673e-11	0.00746609	2.71431e-9
chr5	143094711	143094811	3347640	0	+	0.45	(0.424,0.459]	chr5	307378	366	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000443674.5:ENST00000418236.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.05139	5.43642	5.82145	4.27641e-5	1.92567e-8	0.00199812	1.85307e-6
chr2	39052082	39052180	1423926	0	-	0.357143	(0.32,0.36]	chr2	148222	3	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	5.29318	5.43592	5.57866	1.5251e-5	4.88976e-12	8.01855e-4	7.80878e-10
chr3	146537323	146537409	2468580	0	-	0.453488	(0.424,0.459]	chr3	236730	4	INTRON	INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000469266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	4.34979	5.43589	6.52199	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	176056902	176057002	809383	0	-	0.36	(0.32,0.36]	chr1	90106	102	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	4.27744	5.435155	6.59287	6.03386e-5	1.01197e-12	0.00268144	1.74544e-10
chr17	58999179	58999277	8971625	0	-	0.367347	(0.36,0.392]	chr17	863963	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM37	ENSG00000108395.14	ENST00000585287.5:ENST00000393066.7:ENST00000583945.5:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	5.3888	5.43297	5.47714	5.01221e-12	1e-12	7.97613e-10	1.72912e-10
chr3	111082367	111082467	1950865	0	+	0.43	(0.424,0.459]	chr3	196552	47	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000491525.5:ENST00000461477.5:ENST00000485303.6:ENST00000319792.7:ENST00000486596.5:ENST00000493615.5:ENST00000488016.1:ENST00000470618.1:ENST00000481766.1:ENST00000478327.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	5.09414	5.432495	5.77085	5.32819e-8	4.02077e-10	4.72329e-6	4.98364e-8
chr9	127363507	127363606	5496802	0	+	0.545455	(0.526,0.57]	chr9	491195	19	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GARNL3	ENSG00000136895.19	ENST00000435213.6:ENST00000373387.9:ENST00000373386.6:ENST00000478696.5:ENST00000496711.5:ENST00000481242.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	5.19933	5.4323999999999995	5.66547	4.16513e-6	4.05077e-8	2.48371e-4	3.67181e-6
chr5	172271010	172271110	3665428	0	-	0.41	(0.392,0.424]	chr5	333249	363	INTRON	INTRON	UBTD2	ENSG00000168246.6	ENST00000393792.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	5.35092	5.432215	5.51351	1.74707e-11	1.32427e-12	2.60849e-9	2.25469e-10
chr11	111647701	111647801	6492320	0	+	0.55	(0.526,0.57]	chr11	586972	269	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.25987	5.432195	5.60452	2.82947e-6	6.77869e-8	1.75466e-4	5.95616e-6
chr22	17988300	17988400	9983069	0	-	0.57	(0.526,0.57]	chr22	993630	811	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	5.25987	5.432195	5.60452	2.82947e-6	6.77869e-8	1.75466e-4	5.95616e-6
chr1	235125335	235125433	889833	0	-	0.510204	(0.49,0.526]	chr1	99098	26	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	5.42971	5.43117	5.43263	5.89334e-7	1e-12	4.28084e-5	1.73382e-10
chr16	69662992	69663092	8423065	0	+	0.37	(0.36,0.392]	chr16	788984	27	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000563474.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	4.74503	5.4303550000000005	6.11568	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	69430408	69430508	8024294	0	+	0.4	(0.392,0.424]	chr15	741756	8	INTRON	INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000558346.5:ENST00000559279.6:ENST00000558585.5:ENST00000559283.1:ENST00000559456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	5.1781	5.430165	5.68223	2.48959e-5	1.931e-7	0.00122627	1.56398e-5
chr16	24746738	24746838	8357372	0	+	0.42	(0.392,0.424]	chr16	779110	161	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	5.1781	5.430165	5.68223	2.48959e-5	1.931e-7	0.00122627	1.56398e-5
chr2	188329480	188329580	1233200	0	+	0.41	(0.392,0.424]	chr2	129367	347	INTRON	INTRON	GULP1	ENSG00000144366.16	ENST00000409843.5:ENST00000409830.6:ENST00000410051.5:ENST00000479019.5:ENST00000409927.5:ENST00000409805.5:ENST00000359135.7:ENST00000409580.5:ENST00000409637.7:ENST00000409609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	4.89327	5.429945	5.96662	3.77123e-8	6.28695e-9	3.4456e-6	6.5739e-7
chr16	48373163	48373262	8552151	0	-	0.353535	(0.32,0.36]	chr16	805166	74	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	5.09957	5.428585	5.7576	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	57495880	57495978	6924458	0	+	0.653061	(0.629,1]	chr12	633330	49	INTRON	INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551892.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	5.39999	5.428455	5.45692	2.69914e-7	1.47634e-7	2.1149e-5	1.22032e-5
chr2	161340985	161341070	1593978	0	-	0.8	(0.629,1]	chr2	164993	3	EXON_PSEUDO	EXON_PSEUDO	MXRA7P1	ENSG00000232320.6	ENST00000482477.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	5.39999	5.428455	5.45692	2.69914e-7	1.47634e-7	2.1149e-5	1.22032e-5
chr13	41611075	41611175	7501881	0	-	0.5	(0.49,0.526]	chr13	690442	1	SS5_PROX	SS5_PROX:INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	5.13094	5.428105	5.72527	1.60521e-8	2.38916e-11	1.5647e-6	3.48506e-9
chr5	98918157	98918257	3555073	0	-	0.54	(0.526,0.57]	chr5	323900	127	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	4.69612	5.427849999999999	6.15958	1.35215e-8	3.4729e-11	1.35132e-6	4.95584e-9
chr20	35939308	35939408	9639055	0	+	0.57	(0.526,0.57]	chr20	951822	2	SS5_PROX	SS5_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000473943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	4.59836	5.42744	6.25652	1.84046e-11	4.4752e-12	2.7267e-9	7.16361e-10
chr4	41256976	41257020	2610146	0	+	0.613636	(0.57,0.629]	chr4	250012	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	4.99278	5.426819999999999	5.86086	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	39089506	39089604	7814052	0	-	0.408163	(0.392,0.424]	chr14	719156	9	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.81758	5.42596	6.03434	6.29448e-8	3.73254e-9	5.585e-6	4.03186e-7
chr11	122417476	122417575	6766406	0	-	0.323232	(0.32,0.36]	chr11	617641	39	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1:ENST00000648576.1	lncRNA	lncRNA	lncRNA	lncRNA	3	35	2	5.29443	5.4254999999999995	5.55657	2.228e-12	1e-12	3.70774e-10	1.72912e-10
chr1	92832012	92832063	233338	0	+	0.686275	(0.629,1]	chr1	23285	1	UTR5	UTR5:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.3029	5.425435	5.54797	7.37915e-7	5.19015e-8	5.32314e-5	4.6354e-6
chr17	75224602	75224702	8799666	0	+	0.48	(0.459,0.49]	chr17	837302	1	SS3_PROX	SS3_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.16672	5.42535	5.68398	7.74288e-6	5.57196e-8	4.39068e-4	4.89622e-6
chr19	44433165	44433265	9509215	0	-	0.47	(0.459,0.49]	chr19	937645	4	INTRON	INTRON	ZNF229	ENSG00000278318.5	ENST00000591289.5:ENST00000613197.4:ENST00000614049.5:ENST00000620012.4:ENST00000592308.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	5.16672	5.42535	5.68398	7.74288e-6	5.57196e-8	4.39068e-4	4.89622e-6
chr3	71219864	71219964	2338269	0	-	0.49	(0.459,0.49]	chr3	226508	91	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000650295.1:ENST00000648895.1:ENST00000648826.1:ENST00000318779.7:ENST00000648107.1:ENST00000648662.1:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	5.16672	5.42535	5.68398	7.74288e-6	5.57196e-8	4.39068e-4	4.89622e-6
chr7	155712943	155713041	4596381	0	+	0.571429	(0.57,0.629]	chr7	413770	11	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	4.55347	5.425265	6.29706	4.82347e-12	1.45328e-12	7.71283e-10	2.44971e-10
chr12	57502276	57502373	6924528	0	+	0.463918	(0.459,0.49]	chr12	633346	14	INTRON	INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549827.1:ENST00000548944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.23503	5.425095000000001	5.61516	5.25256e-6	9.49302e-8	3.11102e-4	8.06088e-6
chr15	45025149	45025249	7963697	0	+	0.4	(0.392,0.424]	chr15	736849	14	INTRON	INTRON	SORD	ENSG00000140263.15	ENST00000674211.1:ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	4.75797	5.4241	6.09023	2.01084e-7	1.13607e-9	1.60882e-5	1.32549e-7
chr1	155933949	155934044	779306	0	-	0.4	(0.392,0.424]	chr1	86130	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1:ENST00000491599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.36677	5.4213450000000005	6.47592	8.10105e-6	3.31901e-12	4.57465e-4	5.37234e-10
chr16	28200998	28201098	8539859	0	-	0.5	(0.49,0.526]	chr16	802974	196	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.11613	5.4207	5.72527	1.03252e-5	1.60521e-8	5.57702e-4	1.5647e-6
chr1	27903059	27903158	553196	0	-	0.484848	(0.459,0.49]	chr1	61463	50	INTRON	INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	4.53838	5.420225	6.30207	2.24187e-7	6.43707e-12	1.8079e-5	1.01538e-9
chr14	96554868	96554964	7744062	0	+	0.322917	(0.32,0.36]	chr14	710929	15	INTRON	INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556283.1:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.03749	5.41985	5.80221	9.65678e-5	2.13657e-7	0.00399919	1.69216e-5
chr15	62428129	62428229	7996295	0	+	0.33	(0.32,0.36]	chr15	739259	371	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.03749	5.41985	5.80221	9.65678e-5	2.13657e-7	0.00399919	1.69216e-5
chr17	7472198	7472298	8861157	0	-	0.56	(0.526,0.57]	chr17	847644	45	INTRON	INTRON	ZBTB4	ENSG00000174282.12	ENST00000311403.4:ENST00000380599.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	4.59829	5.419605000000001	6.24092	4.99738e-8	8.32645e-12	4.53531e-6	1.29188e-9
chr6	107956306	107956406	4155202	0	-	0.36	(0.32,0.36]	chr6	378389	2	SS3_PROX	SS3_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1:ENST00000460009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.13957	5.4192800000000005	5.69899	6.71414e-5	3.81705e-7	0.00291649	2.90385e-5
chr12	120550199	120550299	7033031	0	+	0.52	(0.49,0.526]	chr12	644269	32	INTRON	INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000537997.1:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	3.94148	5.41747	6.89346	2.83656e-9	1e-12	3.13881e-7	1.72912e-10
chr3	41539431	41539531	2242264	0	-	0.37	(0.36,0.392]	chr3	216784	758	INTRON	INTRON	ULK4	ENSG00000168038.11	ENST00000301831.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.96718	5.41738	5.86758	1.24104e-4	5.98276e-8	0.0049353	5.2159e-6
chr7	86980766	86980866	4765409	0	-	0.38	(0.36,0.392]	chr7	426778	149	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.96718	5.41738	5.86758	1.24104e-4	5.98276e-8	0.0049353	5.2159e-6
chr1	222890977	222891077	437816	0	+	0.37	(0.36,0.392]	chr1	47264	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676412.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.03921	5.416869999999999	5.79453	9.59768e-5	9.49031e-8	0.00399331	8.06088e-6
chr3	158804871	158804963	2059339	0	+	0.391304	(0.36,0.392]	chr3	205194	1	SS3_PROX	SS3_PROX:INTRON	MFSD1	ENSG00000118855.21	ENST00000486568.5:ENST00000465739.5:ENST00000392813.8:ENST00000622669.4:ENST00000484166.5:ENST00000651862.1:ENST00000415822.8:ENST00000480292.5:ENST00000264266.12:ENST00000471266.5:ENST00000471500.5:ENST00000474670.6:ENST00000482835.1:ENST00000476860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	5.03921	5.416869999999999	5.79453	9.59768e-5	9.49031e-8	0.00399331	8.06088e-6
chr8	41969712	41969812	5161263	0	-	0.4	(0.392,0.424]	chr8	462355	47	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000647746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	5.39479	5.416115	5.43744	4.26975e-6	3.2826e-12	2.57151e-4	5.32874e-10
chr6	37876086	37876186	3771147	0	+	0.26	[0,0.32]	chr6	345064	557	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.89255	5.414485	5.93642	2.15736e-7	3.87502e-8	1.70234e-5	3.55241e-6
chr19	34273791	34273890	9326863	0	+	0.535354	(0.526,0.57]	chr19	904129	78	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.90802	5.414265	5.92051	4.81512e-5	1.10942e-9	0.00220626	1.30307e-7
chr8	94993937	94994036	5026833	0	+	0.434343	(0.424,0.459]	chr8	451410	47	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.37155	5.41353	5.45551	2.42251e-6	1.50668e-6	1.53938e-4	9.96778e-5
chr1	29167012	29167112	556307	0	-	0.44	(0.424,0.459]	chr1	61808	1	SS3_PROX	SS3_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	4.73523	5.409974999999999	6.08472	5.26214e-11	1e-12	7.33664e-9	1.73382e-10
chr5	82142696	82142796	3239422	0	+	0.38	(0.36,0.392]	chr5	299137	309	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	5.02429	5.409409999999999	5.79453	9.49031e-8	1.54207e-8	8.06088e-6	1.51982e-6
chr7	4985130	4985230	4297964	0	+	0.38	(0.36,0.392]	chr7	389270	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000493407.5:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000406608.2:ENST00000405396.2:ENST00000464479.1:ENST00000466622.1	lncRNA	lncRNA	lncRNA	lncRNA	1	20	2	5.02429	5.409409999999999	5.79453	9.49031e-8	1.54207e-8	8.06088e-6	1.51982e-6
chr4	17870404	17870503	2848027	0	-	0.40404	(0.392,0.424]	chr4	269582	30	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000676180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.61293	5.4085	6.20407	8.49057e-4	2.05488e-10	0.0240064	2.64594e-8
chr6	149338485	149338585	3924919	0	+	0.32	[0,0.32]	chr6	357472	167	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.39782	5.4073	6.41678	0.00334699	7.3754e-11	0.0734189	1.00949e-8
chr4	13626712	13626812	2841587	0	-	0.49	(0.459,0.49]	chr4	269173	4	SS3_PROX	SS3_PROX:INTRON	BOD1L1	ENSG00000038219.13	ENST00000040738.10:ENST00000482713.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	4.28074	5.407265	6.53379	3.57604e-6	1e-12	2.18487e-4	1.72912e-10
chr2	27345857	27345956	1407314	0	-	0.494949	(0.49,0.526]	chr2	146156	19	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	4.88635	5.407220000000001	5.92809	1.46599e-9	1.02462e-9	1.70181e-7	1.20726e-7
chr5	148391541	148391640	3350646	0	+	0.414141	(0.392,0.424]	chr5	307728	61	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	5.13089	5.40656	5.68223	1.931e-7	1.3052e-9	1.56398e-5	1.52229e-7
chr12	116165375	116165475	7290573	0	-	0.57	(0.526,0.57]	chr12	672490	535	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.03431	5.406535	5.77876	1.64566e-5	9.84906e-9	8.48927e-4	1.00136e-6
chr7	72991776	72991876	4729498	0	-	0.55	(0.526,0.57]	chr7	424043	114	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	5.03431	5.406535	5.77876	1.64566e-5	9.84906e-9	8.48927e-4	1.00136e-6
chr1	43939721	43939818	590891	0	-	0.494845	(0.49,0.526]	chr1	66449	4	EXON_LNCRNA	EXON_LNCRNA	LINC02918	ENSG00000237950.3	ENST00000657883.1	lncRNA	lncRNA	lncRNA	lncRNA	2	39	2	4.62528	5.406225	6.18717	1.66076e-11	1.36955e-11	2.50009e-9	2.06807e-9
chr4	139095092	139095192	3014025	0	-	0.32	[0,0.32]	chr4	282110	107	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.72543	5.405745	6.08606	1.35488e-6	5.85315e-9	9.17479e-5	6.18098e-7
chr18	21590176	21590275	9188332	0	-	0.434343	(0.424,0.459]	chr18	885538	54	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	4.36966	5.40432	6.43898	3.96287e-6	2.53975e-12	2.39291e-4	4.16121e-10
chr15	49146671	49146771	8157257	0	-	0.43	(0.424,0.459]	chr15	756476	12	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	4.74933	5.40393	6.05853	9.96009e-8	7.70458e-10	8.4812e-6	9.22745e-8
chr17	37587647	37587746	8920439	0	-	0.454545	(0.424,0.459]	chr17	855416	7	INTRON	INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000614000.4:ENST00000619976.1:ENST00000620424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	4.74933	5.40393	6.05853	9.96009e-8	7.70458e-10	8.4812e-6	9.22745e-8
chr19	47141419	47141517	9368064	0	+	0.459184	(0.424,0.459]	chr19	911715	55	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000594526.5:ENST00000597808.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000600753.1:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	4.74933	5.40393	6.05853	9.96009e-8	7.70458e-10	8.4812e-6	9.22745e-8
chr2	26064700	26064800	956280	0	+	0.39	(0.36,0.392]	chr2	104254	296	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	5.36786	5.4036100000000005	5.43936	3.42448e-6	7.7117e-11	2.10826e-4	1.05061e-8
chr18	12880886	12880983	9184104	0	-	0.360825	(0.36,0.392]	chr18	885154	3	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	4.38376	5.4032	6.42264	1.64803e-5	1.2419e-11	8.48507e-4	1.89925e-9
chr17	1380837	1380937	8836514	0	-	0.43	(0.424,0.459]	chr17	843210	107	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	4.77691	5.403195	6.02948	4.08028e-8	1.8912e-9	3.72797e-6	2.1436e-7
chr10	77867804	77867903	6177332	0	-	0.454545	(0.424,0.459]	chr10	553257	106	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	5.18388	5.40283	5.62178	1.21594e-5	2.83203e-7	6.58699e-4	2.17914e-5
chr1	93165900	93166000	694712	0	-	0.44	(0.424,0.459]	chr1	75270	28	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.26756	5.40258	5.5376	8.0232e-6	4.83052e-7	4.54299e-4	3.58077e-5
chr14	21434625	21434724	7774315	0	-	0.393939	(0.392,0.424]	chr14	715263	24	INTRON	INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000557364.6:ENST00000643469.1:ENST00000646340.1:ENST00000555962.6:ENST00000642518.1:ENST00000643048.1:ENST00000553651.2:ENST00000646063.1:ENST00000553283.1:ENST00000553622.5:ENST00000556833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	4.53319	5.402575000000001	6.27196	1.61757e-6	1.10884e-10	1.08646e-4	1.47443e-8
chr1	153753005	153753102	302827	0	+	0.56701	(0.526,0.57]	chr1	32397	2	INTRON	INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000480659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	172	2	5.37649	5.401935	5.42738	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	210635822	210635921	1296718	0	+	0.343434	(0.32,0.36]	chr2	134181	42	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1:ENST00000497121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	50	2	5.38681	5.40188	5.41695	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	55991689	55991789	3471232	0	-	0.36	(0.32,0.36]	chr5	318961	85	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000577363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	5.00064	5.40146	5.80228	4.42887e-8	1e-12	3.9809e-6	1.73382e-10
chr7	158699631	158699731	4911917	0	-	0.51	(0.49,0.526]	chr7	438972	31	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	4.38893	5.400905	6.41288	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	60728531	60728631	2308569	0	-	0.25	[0,0.32]	chr3	225041	1912	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.8652	5.40081	5.93642	4.11137e-4	3.87502e-8	0.0138446	3.55241e-6
chr19	47172505	47172604	9368389	0	+	0.50505	(0.49,0.526]	chr19	911772	22	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	4.79681	5.40014	6.00347	3.35573e-9	4.64321e-10	3.68324e-7	5.72685e-8
chr11	12714025	12714124	6325296	0	+	0.484848	(0.459,0.49]	chr11	567852	381	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	4.82652	5.399285000000001	5.97205	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	57423503	57423603	3799710	0	+	0.46	(0.459,0.49]	chr6	348660	209	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000490313.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	5.27213	5.398465	5.5248	4.6898e-12	1e-12	7.52307e-10	1.73382e-10
chr1	205743476	205743575	846268	0	-	0.282828	[0,0.32]	chr1	94185	135	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.36319	5.3983799999999995	5.43357	1.13263e-5	8.40147e-6	6.25152e-4	4.71048e-4
chr3	197977311	197977408	2151532	0	+	0.278351	[0,0.32]	chr3	211122	2	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000419117.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000482837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	5.36319	5.3983799999999995	5.43357	1.13263e-5	8.40147e-6	6.25152e-4	4.71048e-4
chr2	201124642	201124742	1262595	0	+	0.44	(0.424,0.459]	chr2	131615	15	INTRON	INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341222.10:ENST00000341582.10:ENST00000342795.9:ENST00000395148.6:ENST00000441224.5:ENST00000433445.1:ENST00000423241.6:ENST00000439154.6:ENST00000425030.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	5.39684	5.398054999999999	5.39927	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	21109826	21109925	537093	0	-	0.575758	(0.57,0.629]	chr1	59079	203	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	5.17892	5.397675	5.61643	3.48382e-6	4.34385e-8	2.13641e-4	3.91431e-6
chr11	18526883	18526951	6581894	0	-	0.588235	(0.57,0.629]	chr11	598619	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000438874.6:ENST00000535077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	5.17892	5.397675	5.61643	3.48382e-6	4.34385e-8	2.13641e-4	3.91431e-6
chr10	87233230	87233330	6193406	0	-	0.48	(0.459,0.49]	chr10	554155	195	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.83271	5.394735	5.95676	1.09213e-4	1.17119e-9	0.00442392	1.35849e-7
chr20	34805054	34805154	9730430	0	-	0.46	(0.459,0.49]	chr20	963275	121	INTRON	INTRON	NCOA6	ENSG00000198646.14	ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.83271	5.394735	5.95676	1.09213e-4	1.17119e-9	0.00442392	1.35849e-7
chr14	21206803	21206900	7772779	0	-	0.371134	(0.36,0.392]	chr14	714914	3	EXON_LNCRNA	EXON_LNCRNA	LINC00641	ENSG00000258441.1	ENST00000555688.1	lncRNA	lncRNA	lncRNA	lncRNA	5	53	2	5.29974	5.393905	5.48807	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	128663717	128663817	7051566	0	+	0.49	(0.459,0.49]	chr12	646502	470	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.97981	5.39349	5.80717	3.36273e-5	1.22616e-8	0.00159406	1.22232e-6
chr7	134744663	134744763	4559281	0	+	0.46	(0.459,0.49]	chr7	409528	3	SS5_PROX	SS5_PROX:INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.97981	5.39349	5.80717	3.36273e-5	1.22616e-8	0.00159406	1.22232e-6
chr3	136262165	136262265	2011514	0	+	0.47	(0.459,0.49]	chr3	202074	1	SS5_PROX	SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000462542.5:ENST00000459873.1:ENST00000475214.5:ENST00000465176.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	5.04785	5.393045000000001	5.73824	2.39418e-5	2.1921e-8	0.00119556	2.0899e-6
chr1	156224529	156224617	309106	0	+	0.511364	(0.49,0.526]	chr1	34151	2	INTRON	INTRON	PMF1	ENSG00000160783.19	ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368277.3:ENST00000606952.5:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	5.35492	5.392315	5.42971	1.0002e-6	5.89334e-7	7.00342e-5	4.28084e-5
chr2	65105905	65106005	1471960	0	-	0.52	(0.49,0.526]	chr2	152399	7	INTRON	INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	5.35492	5.392315	5.42971	1.0002e-6	5.89334e-7	7.00342e-5	4.28084e-5
chr7	29247081	29247181	4342625	0	+	0.5	(0.49,0.526]	chr7	392258	487	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	5.35492	5.392315	5.42971	1.0002e-6	5.89334e-7	7.00342e-5	4.28084e-5
chr9	100145349	100145449	5450480	0	+	0.5	(0.49,0.526]	chr9	486785	130	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	5.35492	5.392315	5.42971	1.0002e-6	5.89334e-7	7.00342e-5	4.28084e-5
chr15	78895004	78895104	8049752	0	+	0.38	(0.36,0.392]	chr15	744114	1	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	4.2635	5.3922799999999995	6.52106	4.58367e-7	2.09599e-12	3.4135e-5	3.49782e-10
chr13	50040447	50040547	7527193	0	-	0.22	[0,0.32]	chr13	692360	84	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	19	2	5.36319	5.389670000000001	5.41615	1.13263e-5	1.29208e-10	6.25152e-4	1.69913e-8
chr1	61099275	61099375	165094	0	+	0.38	(0.36,0.392]	chr1	19198	107	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	4.7574	5.385755	6.01411	2.00235e-10	1e-12	2.59963e-8	1.72912e-10
chr1	28375822	28375922	88379	0	+	0.52	(0.49,0.526]	chr1	9633	56	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	5.20683	5.3855	5.56417	3.9703e-6	1.40942e-7	2.39291e-4	1.1686e-5
chr14	91216460	91216560	7737785	0	+	0.5	(0.49,0.526]	chr14	710173	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	5.28142	5.38532	5.48922	2.46593e-6	2.5213e-7	1.54892e-4	2.01203e-5
chr12	20374142	20374242	6842105	0	+	0.35	(0.32,0.36]	chr12	625044	35	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	5.26021	5.38526	5.51031	2.41138e-6	1.14222e-9	1.53938e-4	1.33948e-7
chr9	33441712	33441804	5605802	0	-	0.532609	(0.526,0.57]	chr9	501875	7	UTR3	UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	4.69612	5.38475	6.07338	1.35215e-8	1.42281e-10	1.35132e-6	1.85512e-8
chr14	39181472	39181569	7607637	0	+	0.525773	(0.49,0.526]	chr14	699950	11	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	448	6055	2	5.33385	5.38387	5.43389	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	165709218	165709318	4267830	0	-	0.68	(0.629,1]	chr6	386874	461	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	5.23317	5.383615000000001	5.53406	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	82273136	82273193	9034345	0	-	0.736842	(0.629,1]	chr17	873305	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	5.35973	5.37986	5.39999	4.20109e-7	2.69914e-7	3.14314e-5	2.1149e-5
chr2	68202143	68202242	1474879	0	-	0.292929	[0,0.32]	chr2	152610	131	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	5.17798	5.37927	5.58056	1.7046e-6	5.34166e-9	1.13343e-4	5.66355e-7
chr11	809964	809966	6294248	0	+	0	[0,0.32]	chr11	564022	1	EXON_LNCRNA	EXON_LNCRNA	RPLP2	ENSG00000177600.9	ENST00000532004.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chr3	33333195	33333295	1824288	0	+	0.24	[0,0.32]	chr3	184592	152	INTRON	INTRON	FBXL2	ENSG00000153558.16	ENST00000498807.5:ENST00000484457.6:ENST00000538892.5:ENST00000435207.5:ENST00000497411.5:ENST00000283627.10:ENST00000432809.5:ENST00000451636.5:ENST00000463736.5:ENST00000425973.5:ENST00000422741.5:ENST00000421391.5:ENST00000483037.5:ENST00000493778.5:ENST00000464164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chr5	180568303	180568403	3408728	0	+	0.32	[0,0.32]	chr5	313260	3	SS5_PROX	SS5_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chr7	18898152	18898252	4324889	0	+	0.24	[0,0.32]	chr7	391003	232	INTRON	INTRON	HDAC9	ENSG00000048052.24	ENST00000406451.8:ENST00000441542.7:ENST00000686413.1:ENST00000401921.5:ENST00000432645.6:ENST00000490851.5:ENST00000483142.5:ENST00000496026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chrX	68095070	68095170	10365121	0	-	0.19	[0,0.32]	chrX	1029156	214	INTRON	INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chrX	72523654	72523754	10371481	0	-	0.28	[0,0.32]	chrX	1029706	280	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chrX	73821738	73821837	10373424	0	-	0.191919	[0,0.32]	chrX	1029941	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	5.10715	5.37917	5.65119	7.53496e-5	1.20332e-6	0.00322158	8.2089e-5
chr1	206314446	206314546	412577	0	+	0.29	[0,0.32]	chr1	44456	18	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2:ENST00000604133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	5.1772	5.3788800000000005	5.58056	5.87341e-5	1.7046e-6	0.00262682	1.13343e-4
chr18	9479637	9479737	9057283	0	+	0.32	[0,0.32]	chr18	875325	2	SS5_PROX	SS5_PROX:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.1772	5.3788800000000005	5.58056	5.87341e-5	1.7046e-6	0.00262682	1.13343e-4
chr3	78797000	78797100	2350445	0	-	0.34	(0.32,0.36]	chr3	227137	497	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	4.58694	5.378845	6.17075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	102143098	102143198	5961711	0	+	0.48	(0.459,0.49]	chr10	535104	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPRC1	ENSG00000148840.11	ENST00000413464.6:ENST00000278070.7:ENST00000370012.1:ENST00000489648.5:ENST00000462933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	4.37357	5.378545	6.38352	2.57494e-12	1.10534e-12	4.27081e-10	1.89699e-10
chr3	141990404	141990501	2454960	0	-	0.42268	(0.392,0.424]	chr3	235653	5	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000492919.1:ENST00000464782.5:ENST00000488107.6:ENST00000494656.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.85654	5.37779	5.89904	1.84333e-4	2.16736e-8	0.00688171	2.09062e-6
chr3	197281878	197281978	2535152	0	-	0.42	(0.392,0.424]	chr3	243107	107	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.85654	5.37779	5.89904	1.84333e-4	2.16736e-8	0.00688171	2.09062e-6
chr4	185284517	185284617	2808759	0	+	0.4	(0.392,0.424]	chr4	265495	170	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.85654	5.37779	5.89904	1.84333e-4	2.16736e-8	0.00688171	2.09062e-6
chr7	75584792	75584889	4735220	0	-	0.412371	(0.392,0.424]	chr7	425207	23	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000616821.4:ENST00000420909.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.85654	5.37779	5.89904	1.84333e-4	2.16736e-8	0.00688171	2.09062e-6
chrX	48523298	48523398	10126220	0	+	0.54	(0.526,0.57]	chrX	1009821	2	SS3_PROX	SS3_PROX:INTRON	EBP	ENSG00000147155.11	ENST00000276096.10:ENST00000498425.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	5.3474	5.3777550000000005	5.40811	1.05485e-6	6.86579e-7	7.33447e-5	4.92496e-5
chr9	120646102	120646202	5714584	0	-	0.41	(0.392,0.424]	chr9	512304	230	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.92302	5.3772199999999994	5.83142	1.45314e-4	3.48252e-8	0.00569484	3.23132e-6
chr2	69643040	69643118	1478893	0	-	0.282051	[0,0.32]	chr2	152995	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1:ENST00000495239.1:ENST00000471775.1:ENST00000461002.1:ENST00000492192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	5.33823	5.377190000000001	5.41615	2.44269e-10	1.29208e-10	3.11038e-8	1.69913e-8
chr1	161826438	161826537	318425	0	+	0.323232	(0.32,0.36]	chr1	36088	49	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.63488	5.37692	6.11896	4.65151e-9	2.94198e-9	4.96782e-7	3.24824e-7
chr12	48664335	48664434	7157937	0	-	0.606061	(0.57,0.629]	chr12	657613	13	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	5.09893	5.37593	5.65293	7.91825e-6	2.31977e-8	4.54299e-4	2.19827e-6
chr2	44221500	44221600	1007101	0	+	0.31	[0,0.32]	chr2	109338	24	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	5.30197	5.3729700000000005	5.44397	8.33093e-10	3.97307e-11	9.89956e-8	5.63135e-9
chr12	48956718	48956801	7159338	0	-	0.60241	(0.57,0.629]	chr12	657986	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARF3	ENSG00000134287.10	ENST00000256682.9:ENST00000485410.5:ENST00000447318.6:ENST00000541959.5:ENST00000541236.5:ENST00000539611.1:ENST00000541967.1:ENST00000536283.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.66708	5.372400000000001	6.07772	7.1397e-9	6.56155e-11	7.41358e-7	9.07364e-9
chr19	43525301	43525401	9505434	0	-	0.43	(0.424,0.459]	chr19	937051	134	INTRON	INTRON	ETHE1	ENSG00000105755.8	ENST00000292147.7:ENST00000594342.5:ENST00000600651.5:ENST00000598330.1:ENST00000602138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.71424	5.37186	6.02948	3.07139e-4	1.8912e-9	0.0105767	2.1436e-7
chr19	38648360	38648460	9344578	0	+	0.46	(0.459,0.49]	chr19	907169	1	SS5_PROX	SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	4.20902	5.371404999999999	6.53379	2.26047e-8	1e-12	2.15233e-6	1.72912e-10
chr1	12584944	12585044	520671	0	-	0.51	(0.49,0.526]	chr1	56279	39	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	106	2	4.96947	5.371355	5.77324	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	54960115	54960214	7834689	0	-	0.444444	(0.424,0.459]	chr14	721693	21	INTRON	INTRON	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2:ENST00000567693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.79703	5.37094	5.94485	2.28148e-4	3.84993e-9	0.00827964	4.17496e-7
chr10	79802697	79802794	6181836	0	-	0.536082	(0.526,0.57]	chr10	553572	3	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5:ENST00000659471.1:ENST00000484794.6:ENST00000495430.2:ENST00000496359.6	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	5.19933	5.370925	5.54252	4.16513e-6	1.66713e-7	2.48371e-4	1.36401e-5
chr20	32424375	32424474	9626629	0	+	0.565657	(0.526,0.57]	chr20	950170	520	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	5.25987	5.370775	5.48168	2.82947e-6	2.6732e-7	1.75466e-4	2.09843e-5
chr2	54159610	54159710	1031661	0	+	0.46	(0.459,0.49]	chr2	110746	164	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000607452.6:ENST00000394666.7:ENST00000303536.8:ENST00000494922.6:ENST00000606865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	5.19135	5.370315	5.54928	2.53394e-7	1.19432e-11	1.97194e-5	1.83308e-9
chr22	30972365	30972463	9929482	0	+	0.387755	(0.36,0.392]	chr22	986220	7	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	5.28659	5.369540000000001	5.45249	1.56467e-10	1e-12	2.05014e-8	1.72912e-10
chr11	58604240	58604340	6399365	0	+	0.43	(0.424,0.459]	chr11	573836	190	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.96809	5.36947	5.77085	6.10851e-5	5.32819e-8	0.0027377	4.72329e-6
chr2	135514657	135514757	1571326	0	-	0.43	(0.424,0.459]	chr2	162852	98	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	5.05139	5.368945	5.6865	4.27641e-5	9.64047e-8	0.00199812	8.13052e-6
chr2	161184953	161185053	1192322	0	+	0.43	(0.424,0.459]	chr2	125372	48	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5:ENST00000403609.1:ENST00000489393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	5.28862	5.368235	5.44785	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227076937	227077035	874779	0	-	0.387755	(0.36,0.392]	chr1	97505	22	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000684580.1:ENST00000488131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	5.2225	5.367275	5.51205	2.06042e-5	2.39077e-6	0.00103061	1.5204e-4
chr2	25425534	25425634	1401307	0	-	0.37	(0.36,0.392]	chr2	145443	56	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000489949.5:ENST00000479898.5:ENST00000482145.5:ENST00000481841.5:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.2225	5.367275	5.51205	2.06042e-5	2.39077e-6	0.00103061	1.5204e-4
chr7	131171200	131171300	4547475	0	+	0.38	(0.36,0.392]	chr7	409202	279	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.2225	5.367275	5.51205	2.06042e-5	2.39077e-6	0.00103061	1.5204e-4
chr8	31073588	31073687	4967149	0	+	0.383838	(0.36,0.392]	chr8	444979	49	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.2225	5.367275	5.51205	2.06042e-5	2.39077e-6	0.00103061	1.5204e-4
chr14	74129381	74129481	7701741	0	+	0.38	(0.36,0.392]	chr14	707883	152	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr18	46094303	46094391	9216134	0	-	0.386364	(0.36,0.392]	chr18	887854	6	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr4	77723699	77723797	2921961	0	-	0.367347	(0.36,0.392]	chr4	275289	27	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr5	70928972	70929071	3207227	0	+	0.363636	(0.36,0.392]	chr5	295875	34	INTRON	INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr7	76465506	76465606	4436957	0	+	0.37	(0.36,0.392]	chr7	399164	14	INTRON	INTRON	DTX2	ENSG00000091073.20	ENST00000425780.5:ENST00000451769.5:ENST00000456590.5:ENST00000324432.9:ENST00000430490.7:ENST00000446600.5:ENST00000457529.5:ENST00000492339.5:ENST00000413936.6:ENST00000423646.5:ENST00000438930.5:ENST00000442516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr9	79647783	79647883	5410002	0	+	0.37	(0.36,0.392]	chr9	483190	200	INTRON	INTRON	TLE4	ENSG00000106829.20	ENST00000376544.7:ENST00000376552.8:ENST00000470872.5:ENST00000435650.5:ENST00000414465.5:ENST00000376537.8:ENST00000462803.5:ENST00000265284.10:ENST00000425506.5:ENST00000428713.5:ENST00000455913.5:ENST00000496853.5:ENST00000474519.1:ENST00000483597.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chrX	132912912	132913012	10438041	0	-	0.39	(0.36,0.392]	chrX	1034989	1547	INTRON	INTRON	HS6ST2	ENSG00000171004.19	ENST00000370833.7:ENST00000370836.6:ENST00000640529.2:ENST00000406696.5:ENST00000521489.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.29492	5.36714	5.43936	1.51392e-5	3.42448e-6	7.85619e-4	2.10826e-4
chr1	204478654	204478754	842966	0	-	0.48	(0.459,0.49]	chr1	93787	84	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000415899.2:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	5.33218	5.366435	5.40069	1.78412e-6	1.15324e-6	1.1709e-4	7.95154e-5
chr7	133429004	133429104	4552530	0	+	0.47	(0.459,0.49]	chr7	409374	322	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000393161.6:ENST00000253861.5:ENST00000462055.5:ENST00000486409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	5.33218	5.366435	5.40069	1.78412e-6	1.15324e-6	1.1709e-4	7.95154e-5
chr3	47851071	47851166	2265709	0	-	0.526316	(0.526,0.57]	chr3	219009	5	UTR3	UTR3:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.84794	5.365865	5.88379	6.50622e-5	2.39626e-9	0.00284455	2.67554e-7
chr17	49333208	49333308	8960343	0	-	0.5	(0.49,0.526]	chr17	861984	103	INTRON	INTRON	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.04178	5.364470000000001	5.68716	1.57703e-5	3.37299e-8	8.20905e-4	3.12343e-6
chr2	46318111	46318211	1017127	0	+	0.44	(0.424,0.459]	chr2	109663	198	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	5.24286	5.364205	5.48555	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	10306098	10306192	2168732	0	-	0.393617	(0.392,0.424]	chr3	212087	3	SS3_PROX	SS3_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	4.89327	5.3623449999999995	5.83142	3.77123e-8	3.48252e-8	3.4456e-6	3.23132e-6
chr13	45334546	45334644	7514845	0	-	0.418367	(0.392,0.424]	chr13	691017	12	UTR3	UTR3:EXON_MRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	4.75797	5.362295	5.96662	2.01084e-7	6.28695e-9	1.60882e-5	6.5739e-7
chr15	79894705	79894804	8256575	0	-	0.414141	(0.392,0.424]	chr15	766399	50	INTRON	INTRON	MTHFS	ENSG00000136371.11	ENST00000258874.4:ENST00000559722.2:ENST00000560919.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.32767	5.361230000000001	5.39479	5.95442e-6	4.26975e-6	3.4453e-4	2.57151e-4
chr18	6744098	6744198	9042872	0	+	0.41	(0.392,0.424]	chr18	874554	136	INTRON	INTRON	ARHGAP28	ENSG00000088756.13	ENST00000383472.9:ENST00000583410.1:ENST00000584387.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.32767	5.361230000000001	5.39479	5.95442e-6	4.26975e-6	3.4453e-4	2.57151e-4
chr7	76584307	76584407	4437809	0	+	0.42	(0.392,0.424]	chr7	399292	324	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	14	2	5.32767	5.361230000000001	5.39479	5.95442e-6	4.26975e-6	3.4453e-4	2.57151e-4
chrX	24982512	24982612	10108863	0	+	0.42	(0.392,0.424]	chrX	1007785	516	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	5.32767	5.361230000000001	5.39479	5.95442e-6	4.26975e-6	3.4453e-4	2.57151e-4
chr14	100558364	100558464	7914520	0	-	0.69	(0.629,1]	chr14	729639	75	INTRON	INTRON	BEGAIN	ENSG00000183092.18	ENST00000554140.3:ENST00000637716.2:ENST00000355173.7:ENST00000556188.6:ENST00000553553.6:ENST00000637646.1:ENST00000557378.6:ENST00000554747.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	4.23349	5.360329999999999	6.48717	1.0602e-10	1e-12	1.42676e-8	1.72912e-10
chr20	58892209	58892309	9683498	0	+	0.67	(0.629,1]	chr20	956576	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	4.37854	5.360295000000001	6.34205	6.46361e-12	1e-12	1.01557e-9	1.72912e-10
chr22	50406288	50406388	9977045	0	+	0.64	(0.629,1]	chr22	992686	2	SS3_PROX	SS3_PROX:INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	5.08658	5.360099999999999	5.63362	5.52146e-6	1.82535e-8	3.23814e-4	1.78915e-6
chr3	65904481	65904579	2325165	0	-	0.632653	(0.629,1]	chr3	225650	13	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	5.14318	5.359859999999999	5.57654	3.40591e-6	3.61535e-8	2.08838e-4	3.34936e-6
chr15	60383037	60383136	8196682	0	-	0.424242	(0.392,0.424]	chr15	760070	7	EXON_MRNA	EXON_MRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	4.68238	5.35836	6.03434	3.20208e-7	3.73254e-9	2.47387e-5	4.03186e-7
chr5	10358260	10358360	3119902	0	+	0.42	(0.392,0.424]	chr5	288981	32	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	4.81758	5.35831	5.89904	6.29448e-8	2.16736e-8	5.585e-6	2.09062e-6
chr17	35116658	35116758	8913973	0	-	0.47	(0.459,0.49]	chr17	854346	4	SS5_PROX	SS5_PROX:INTRON	RAD51D	ENSG00000185379.21	ENST00000345365.11:ENST00000588372.5:ENST00000394589.8:ENST00000586044.5:ENST00000335858.11:ENST00000588594.5:ENST00000587977.5:ENST00000590016.5:ENST00000586210.5:ENST00000460118.6:ENST00000587405.5:ENST00000592577.5:ENST00000590631.1:ENST00000415064.6:ENST00000587982.5:ENST00000592430.5:ENST00000585947.5:ENST00000585982.5:ENST00000585343.5:ENST00000586186.2:ENST00000592850.5:ENST00000592928.2:ENST00000589506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.16672	5.3580000000000005	5.54928	7.74288e-6	2.53394e-7	4.39068e-4	1.97194e-5
chr4	102826084	102826184	2978256	0	-	0.47	(0.459,0.49]	chr4	279132	2	SS5_PROX	SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000338145.7:ENST00000349311.12:ENST00000357194.10:ENST00000505307.5:ENST00000510129.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	5.16672	5.3580000000000005	5.54928	7.74288e-6	2.53394e-7	4.39068e-4	1.97194e-5
chrX	74225706	74225805	10376615	0	-	0.484848	(0.459,0.49]	chrX	1030052	66	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	0	18	2	5.16672	5.3580000000000005	5.54928	7.74288e-6	2.53394e-7	4.39068e-4	1.97194e-5
chr16	69165140	69165240	8419697	0	+	0.43	(0.424,0.459]	chr16	788755	4	SS3_PROX	SS3_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	5.09414	5.35796	5.62178	2.83203e-7	4.02077e-10	2.17914e-5	4.98364e-8
chr9	111586665	111586764	5693916	0	-	0.484848	(0.459,0.49]	chr9	510639	1	INTRON	INTRON	PTGR1	ENSG00000106853.20	ENST00000538962.7:ENST00000407693.7:ENST00000466771.6:ENST00000309195.9:ENST00000374324.5:ENST00000422125.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	5.23503	5.357815	5.4806	5.25256e-6	4.11395e-7	3.11102e-4	3.09732e-5
chr1	20870248	20870347	534664	0	-	0.363636	(0.36,0.392]	chr1	58945	46	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	5.14813	5.35593	5.56373	2.64969e-9	1e-12	2.94929e-7	1.73382e-10
chr5	56835428	56835528	3177530	0	+	0.56	(0.526,0.57]	chr5	293505	190	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	5.17824	5.355865	5.53349	8.2282e-12	1e-12	1.28096e-9	1.73382e-10
chr15	50594008	50594088	8165124	0	-	0.3375	(0.32,0.36]	chr15	757048	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5:ENST00000560284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	4.11199	5.355214999999999	6.59844	2.44546e-6	2.46503e-12	1.55199e-4	4.05946e-10
chr9	26945796	26945896	5592122	0	-	0.42	(0.392,0.424]	chr9	501239	102	INTRON	INTRON	PLAA	ENSG00000137055.15	ENST00000397292.8:ENST00000520884.5:ENST00000523212.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	5.11125	5.3532150000000005	5.59518	3.31137e-5	1e-12	0.00159224	1.72912e-10
chr6	38503993	38504093	4054979	0	-	0.45	(0.424,0.459]	chr6	369506	1	SS5_PROX	SS5_PROX:INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	4.35909	5.353035	6.34698	1.2237e-8	1.28346e-11	1.23286e-6	1.9463e-9
chrX	17380021	17380121	10091104	0	+	0.51	(0.49,0.526]	chrX	1006577	33	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	4.78903	5.3515	5.91397	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	151436533	151436632	766355	0	-	0.525253	(0.49,0.526]	chr1	83619	53	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	4.60733	5.351255	6.09518	4.64685e-8	1.11716e-10	4.23007e-6	1.47877e-8
chr12	64437557	64437656	6936220	0	+	0.363636	(0.36,0.392]	chr12	634861	15	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	5.26217	5.350765	5.43936	3.42448e-6	4.53146e-10	2.10826e-4	5.61917e-8
chr1	174898992	174899091	357457	0	+	0.383838	(0.36,0.392]	chr1	38971	210	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	4.38376	5.35039	6.31702	1.64803e-5	7.38095e-11	8.48507e-4	1.00784e-8
chrX	73851424	73851524	10373727	0	-	0.54	(0.526,0.57]	chrX	1029968	141	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000429829.6:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	5.09465	5.349584999999999	5.60452	1.16684e-5	6.77869e-8	6.16746e-4	5.95616e-6
chr4	109039268	109039368	2990512	0	-	0.4	(0.392,0.424]	chr4	280097	285	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	5.1781	5.348585	5.51907	2.48959e-5	1e-12	0.00122627	1.73382e-10
chr1	43867770	43867870	130160	0	+	0.35	(0.32,0.36]	chr1	15687	91	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1:ENST00000644645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.7265	5.34788	5.96926	6.12159e-4	3.15048e-8	0.0189985	2.93512e-6
chr12	43875122	43875222	6883137	0	+	0.36	(0.32,0.36]	chr12	628125	298	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.7265	5.34788	5.96926	6.12159e-4	3.15048e-8	0.0189985	2.93512e-6
chr20	502964	503064	9691335	0	-	0.36	(0.32,0.36]	chr20	958391	29	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000646443.1:ENST00000608066.6:ENST00000646908.1:ENST00000645641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.7265	5.34788	5.96926	6.12159e-4	3.15048e-8	0.0189985	2.93512e-6
chr5	140686888	140686976	3623603	0	-	0.329545	(0.32,0.36]	chr5	329058	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7:ENST00000415192.6:ENST00000518126.6:ENST00000502888.2:ENST00000674721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.7265	5.34788	5.96926	6.12159e-4	3.15048e-8	0.0189985	2.93512e-6
chr12	47807253	47807352	7155346	0	-	0.444444	(0.424,0.459]	chr12	657281	46	INTRON	INTRON	HDAC7	ENSG00000061273.18	ENST00000080059.12:ENST00000354334.7:ENST00000552960.5:ENST00000427332.6:ENST00000425451.2:ENST00000430670.5:ENST00000422254.5:ENST00000440293.5:ENST00000434070.5:ENST00000447463.5:ENST00000421231.5:ENST00000450805.5:ENST00000417902.5:ENST00000433685.5:ENST00000417107.5:ENST00000445237.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	5.09414	5.347545	5.60095	4.02077e-10	1e-12	4.98364e-8	1.72912e-10
chr1	144988523	144988622	746045	0	-	0.40404	(0.392,0.424]	chr1	79979	278	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.11125	5.347195	5.58314	3.31137e-5	7.33041e-7	0.00159224	5.19799e-5
chr3	98786238	98786338	1932983	0	+	0.41	(0.392,0.424]	chr3	195221	8	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000265261.11:ENST00000469105.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000483910.6:ENST00000485391.5:ENST00000492254.6:ENST00000477574.5:ENST00000485145.1:ENST00000474595.1:ENST00000477899.5:ENST00000493953.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	5.11125	5.347195	5.58314	3.31137e-5	7.33041e-7	0.00159224	5.19799e-5
chr8	6738276	6738375	4921479	0	+	0.444444	(0.424,0.459]	chr8	440006	53	INTRON	INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	4.87285	5.347149999999999	5.82145	2.03044e-8	1.92567e-8	1.97932e-6	1.85307e-6
chr11	47994306	47994406	6395130	0	+	0.42	(0.392,0.424]	chr11	573261	129	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.1781	5.3469549999999995	5.51581	2.48959e-5	1.07176e-6	0.00122627	7.36955e-5
chr22	46082241	46082340	9963979	0	+	0.40404	(0.392,0.424]	chr22	991755	12	INTRON	INTRON	MIRLET7BHG	ENSG00000197182.15	ENST00000381051.6:ENST00000691934.1:ENST00000443490.6	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	5.1781	5.3469549999999995	5.51581	2.48959e-5	1.07176e-6	0.00122627	7.36955e-5
chr5	73076837	73076937	3213318	0	+	0.41	(0.392,0.424]	chr5	296702	1	SS3_PROX	SS3_PROX:INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000512348.5:ENST00000508431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	5.1781	5.3469549999999995	5.51581	2.48959e-5	1.07176e-6	0.00122627	7.36955e-5
chr5	178607497	178607591	3676392	0	-	0.414894	(0.392,0.424]	chr5	334648	13	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	5.1781	5.3469549999999995	5.51581	2.48959e-5	1.07176e-6	0.00122627	7.36955e-5
chr2	31952577	31952677	1411267	0	-	0.33	(0.32,0.36]	chr2	146765	88	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.82783	5.34683	5.86583	4.57616e-4	6.04906e-8	0.0150584	5.40424e-6
chr20	63965470	63965555	9780949	0	-	0.588235	(0.57,0.629]	chr20	970128	4	INTRON	INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.3128	5.346780000000001	5.38076	9.9438e-7	5.85803e-7	7.00342e-5	4.27724e-5
chr17	15487499	15487598	8880053	0	-	0.555556	(0.526,0.57]	chr17	849615	119	INTRON	INTRON	CDRT4	ENSG00000239704.11	ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding	19	272	2	5.25621	5.345905	5.4356	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	35550862	35550962	569385	0	-	0.35	(0.32,0.36]	chr1	63948	171	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1:ENST00000476329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	5.29318	5.34447	5.39576	1.5251e-5	9.86331e-6	8.01855e-4	5.39872e-4
chr4	173190339	173190438	2790693	0	+	0.353535	(0.32,0.36]	chr4	264310	210	INTRON	INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.29318	5.34447	5.39576	1.5251e-5	9.86331e-6	8.01855e-4	5.39872e-4
chr5	77259936	77260036	3224504	0	+	0.49	(0.459,0.49]	chr5	297900	127	INTRON	INTRON	PDE8B	ENSG00000113231.14	ENST00000505926.5:ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8:ENST00000502945.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.76501	5.342835	5.92066	1.46149e-4	2.70029e-9	0.00564049	2.98805e-7
chr1	36226960	36227060	108579	0	+	0.46	(0.459,0.49]	chr1	12451	11	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	4.62945	5.3421	6.05475	2.70956e-10	4.09469e-11	3.40943e-8	5.774e-9
chr12	20577867	20577967	6844146	0	+	0.34	(0.32,0.36]	chr12	625053	53	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	106	2	5.1015	5.342055	5.58261	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	18906099	18906199	8525855	0	-	0.39	(0.36,0.392]	chr16	800829	57	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.88881	5.341670000000001	5.79453	9.49031e-8	8.92448e-8	8.06088e-6	7.65609e-6
chr4	39706775	39706875	2607552	0	+	0.43	(0.424,0.459]	chr4	249765	80	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	4.77691	5.34143	5.90595	4.08028e-8	1.00338e-8	3.72797e-6	1.01215e-6
chr10	18669863	18669962	5805550	0	+	0.585859	(0.57,0.629]	chr10	522674	8	INTRON	INTRON	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	5.17892	5.34116	5.5034	3.48382e-6	1.59473e-7	2.13641e-4	1.31413e-5
chr9	96970657	96970757	5675601	0	-	0.6	(0.57,0.629]	chr9	508298	114	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	22	2	5.17892	5.34116	5.5034	3.48382e-6	1.59473e-7	2.13641e-4	1.31413e-5
chr7	74876493	74876592	4732421	0	-	0.59596	(0.57,0.629]	chr7	424649	77	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	22	2	5.24671	5.341010000000001	5.43531	2.15311e-6	2.83977e-7	1.3963e-4	2.21461e-5
chr17	19354973	19355073	8892032	0	-	0.42	(0.392,0.424]	chr17	851365	67	INTRON	INTRON	B9D1	ENSG00000108641.20	ENST00000671102.1:ENST00000675510.1:ENST00000674596.1:ENST00000582857.2:ENST00000647056.1:ENST00000461069.6:ENST00000663089.1:ENST00000647252.1:ENST00000477478.7:ENST00000261499.11:ENST00000646248.1:ENST00000642870.2:ENST00000395616.7:ENST00000575478.7:ENST00000268841.10:ENST00000440841.1:ENST00000477683.5:ENST00000574508.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	3.66296	5.340809999999999	7.01866	2.12583e-8	1e-12	2.06917e-6	1.73382e-10
chr19	12875500	12875598	9443820	0	-	0.479592	(0.459,0.49]	chr19	927158	4	UTR3	UTR3:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	4.7569	5.33878	5.92066	1.37759e-8	2.70029e-9	1.37123e-6	2.98805e-7
chr15	90452374	90452474	8079754	0	+	0.43	(0.424,0.459]	chr15	747092	2	SS3_PROX	SS3_PROX:INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	5.12829	5.338075	5.54786	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	198176574	198176674	389783	0	+	0.25	[0,0.32]	chr1	41964	189	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	4.10414	5.3347750000000005	6.56541	5.91147e-6	2.98916e-12	3.45863e-4	4.91016e-10
chr2	241424095	241424195	1363909	0	+	0.38	(0.36,0.392]	chr2	141007	56	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr3	17645878	17645975	2195622	0	-	0.381443	(0.36,0.392]	chr3	214306	14	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1:ENST00000473612.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr5	159191323	159191423	3652925	0	-	0.39	(0.36,0.392]	chr5	332367	89	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr6	99556448	99556547	4139461	0	-	0.373737	(0.36,0.392]	chr6	377404	42	INTRON	INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000486428.6:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr7	152222782	152222882	4892713	0	-	0.38	(0.36,0.392]	chr7	438174	1	SS3_PROX	SS3_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1:ENST00000418673.2:ENST00000684140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr9	97630279	97630377	5676766	0	-	0.367347	(0.36,0.392]	chr9	508387	23	INTRON	INTRON	TSTD2	ENSG00000136925.15	ENST00000341170.5:ENST00000375172.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.96718	5.333959999999999	5.70074	1.24104e-4	3.77982e-7	0.0049353	2.84782e-5
chr12	26009846	26009945	6848480	0	+	0.40404	(0.392,0.424]	chr12	625655	144	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000538081.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	5.31679	5.333855	5.35092	1.74707e-11	1e-12	2.60849e-9	1.72912e-10
chr6	16745892	16745991	4012406	0	-	0.373737	(0.36,0.392]	chr6	363027	56	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	5.03921	5.33353	5.62785	9.59768e-5	5.69775e-7	0.00399331	4.16055e-5
chr5	139579685	139579785	3334278	0	+	0.48	(0.459,0.49]	chr5	306100	169	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.97981	5.331894999999999	5.68398	3.36273e-5	5.57196e-8	0.00159406	4.89622e-6
chr19	40671294	40671391	9498743	0	-	0.474227	(0.459,0.49]	chr19	935818	9	INTRON	INTRON	NUMBL	ENSG00000105245.9	ENST00000252891.8:ENST00000598779.5:ENST00000540131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.04785	5.331505	5.61516	2.39418e-5	9.49302e-8	0.00119556	8.06088e-6
chr3	48940589	48940689	1865113	0	+	0.47	(0.459,0.49]	chr3	189123	124	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	5.04785	5.331505	5.61516	2.39418e-5	9.49302e-8	0.00119556	8.06088e-6
chr4	25269403	25269503	2586346	0	+	0.49	(0.459,0.49]	chr4	248268	2	SS5_PROX	SS5_PROX:INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4:ENST00000264864.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.04785	5.331505	5.61516	2.39418e-5	9.49302e-8	0.00119556	8.06088e-6
chr7	111162820	111162920	4815330	0	-	0.48	(0.459,0.49]	chr7	431926	1989	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.04785	5.331505	5.61516	2.39418e-5	9.49302e-8	0.00119556	8.06088e-6
chr1	96732671	96732771	239720	0	+	0.48	(0.459,0.49]	chr1	24102	87	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	4.85489	5.33103	5.80717	1.22616e-8	3.39545e-9	1.22232e-6	3.71453e-7
chr13	51422729	51422829	7528767	0	-	0.44	(0.424,0.459]	chr13	692503	3	SS5_PROX	SS5_PROX:INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6:ENST00000491723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	4.51855	5.3309	6.14325	8.67885e-7	3.56746e-10	6.19626e-5	4.46854e-8
chr1	145779840	145779940	748450	0	-	0.43	(0.424,0.459]	chr1	80175	61	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.89058	5.330715	5.77085	5.32819e-8	8.77883e-9	4.72329e-6	9.05568e-7
chr4	7863985	7864083	2832227	0	-	0.510204	(0.49,0.526]	chr4	268400	18	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000360265.9:ENST00000358461.6:ENST00000382543.4	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.85538	5.32793	5.80048	6.26806e-5	8.0778e-9	0.00277665	8.33659e-7
chr11	34084792	34084889	6368563	0	+	0.309278	[0,0.32]	chr11	570527	14	INTRON	INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	4.64799	5.327675	6.00736	2.00168e-6	2.47801e-8	1.30649e-4	2.36756e-6
chr8	67059430	67059445	5185554	0	-	0.266667	[0,0.32]	chr8	464736	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5:ENST00000518747.1:ENST00000517793.1:ENST00000517406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	4.64799	5.327675	6.00736	2.00168e-6	2.47801e-8	1.30649e-4	2.36756e-6
chr7	111325784	111325884	4816960	0	-	0.35	(0.32,0.36]	chr7	431926	3619	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	4.95632	5.327655	5.69899	3.81705e-7	3.37868e-11	2.90385e-5	4.84285e-9
chr11	77391034	77391133	6656588	0	-	0.383838	(0.36,0.392]	chr11	610454	107	INTRON	INTRON	PAK1	ENSG00000149269.10	ENST00000356341.8:ENST00000530617.5:ENST00000278568.8:ENST00000528203.5:ENST00000533568.5:ENST00000526910.1:ENST00000529248.5:ENST00000524847.5:ENST00000528592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	5.28659	5.327225	5.36786	1.56467e-10	7.7117e-11	2.05014e-8	1.05061e-8
chr7	112159207	112159307	4823737	0	-	0.52	(0.49,0.526]	chr7	432278	1547	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	109	2	5.24445	5.326915	5.40938	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	71283450	71283550	1069779	0	+	0.38	(0.36,0.392]	chr2	113690	63	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	5.02429	5.32607	5.62785	5.69775e-7	1.54207e-8	4.16055e-5	1.51982e-6
chr9	14279387	14279487	5576334	0	-	0.37	(0.36,0.392]	chr9	500103	987	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.26063	5.32555	6.39047	0.00451705	3.80762e-11	0.0875511	5.38572e-9
chr11	75399514	75399517	6446265	0	+	0.333333	(0.32,0.36]	chr11	582434	1	EXON_MRNA	EXON_MRNA	RPS3	ENSG00000149273.15	ENST00000529173.5	protein_coding	retained_intron	protein_coding	retained_intron	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr14	67119359	67119459	7665766	0	+	0.33	(0.32,0.36]	chr14	705295	58	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000478722.6:ENST00000543237.5:ENST00000544752.6:ENST00000555527.1:ENST00000555503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr16	14568373	14568473	8514432	0	-	0.34	(0.32,0.36]	chr16	798962	34	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000563697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr4	88815307	88815407	2952883	0	-	0.35	(0.32,0.36]	chr4	277809	99	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr4	169563549	169563649	3087687	0	-	0.35	(0.32,0.36]	chr4	285739	2	SS3_PROX	SS3_PROX:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000509912.5:ENST00000690631.1:ENST00000688487.1:ENST00000688653.1:ENST00000692868.1:ENST00000692218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr5	6731111	6731211	3114017	0	+	0.36	(0.32,0.36]	chr5	288485	156	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000515721.1:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr7	129948758	129948858	4844088	0	-	0.36	(0.32,0.36]	chr7	433955	4	SS5_PROX	SS5_PROX:INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	5.03749	5.3253699999999995	5.61325	9.65678e-5	1.45077e-6	0.00399919	9.68953e-5
chr8	127838561	127838661	5088384	0	+	0.53	(0.526,0.57]	chr8	455244	183	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	4.0024	5.3251550000000005	6.64791	1.26911e-11	1e-12	1.93823e-9	1.73382e-10
chr4	88849919	88850019	2953231	0	-	0.33	(0.32,0.36]	chr4	277814	267	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	5.13957	5.32494	5.51031	6.71414e-5	2.41138e-6	0.00291649	1.53938e-4
chr16	69597125	69597225	8422399	0	+	0.4	(0.392,0.424]	chr16	788942	282	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	5.13089	5.32335	5.51581	1.07176e-6	1.3052e-9	7.36955e-5	1.52229e-7
chr14	67733400	67733499	7856607	0	-	0.343434	(0.32,0.36]	chr14	723365	32	INTRON	INTRON	ZFYVE26	ENSG00000072121.17	ENST00000394455.6	protein_coding	retained_intron	protein_coding	retained_intron	1	18	2	4.49493	5.32288	6.15083	1.01106e-5	1.52443e-9	5.51435e-4	1.74447e-7
chr3	4562963	4563063	1751805	0	+	0.48	(0.459,0.49]	chr3	179435	415	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	5.02728	5.32122	5.61516	9.49302e-8	3.90202e-10	8.06088e-6	4.86489e-8
chr4	141023801	141023901	3024194	0	-	0.33	(0.32,0.36]	chr4	282506	264	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	5.07106	5.32053	5.57	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	175953285	175953385	1623708	0	-	0.32	[0,0.32]	chr2	167722	52	INTRON	INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	5.22411	5.32013	5.41615	1.49849e-9	1.29208e-10	1.73006e-7	1.69913e-8
chr17	43278154	43278254	8938243	0	-	0.68	(0.629,1]	chr17	859071	480	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	39	891	2	5.31257	5.319885	5.3272	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	49982993	49983092	8161595	0	-	0.454545	(0.424,0.459]	chr15	756743	13	INTRON	INTRON	ATP8B4	ENSG00000104043.15	ENST00000284509.11:ENST00000559726.5:ENST00000559829.5:ENST00000558906.5:ENST00000557955.5:ENST00000674213.1:ENST00000558959.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	5.18388	5.319695	5.45551	1.21594e-5	1.50668e-6	6.58699e-4	9.96778e-5
chr16	81450632	81450732	8450023	0	+	0.44	(0.424,0.459]	chr16	791027	47	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.18388	5.319695	5.45551	1.21594e-5	1.50668e-6	6.58699e-4	9.96778e-5
chr2	44568090	44568190	1009413	0	+	0.44	(0.424,0.459]	chr2	109413	174	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000407131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.18388	5.319695	5.45551	1.21594e-5	1.50668e-6	6.58699e-4	9.96778e-5
chr1	113036130	113036229	262164	0	+	0.444444	(0.424,0.459]	chr1	27092	19	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5:ENST00000451149.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	5.26756	5.319554999999999	5.37155	8.0232e-6	2.42251e-6	4.54299e-4	1.53938e-4
chr17	78876618	78876718	9019954	0	-	0.44	(0.424,0.459]	chr17	871280	23	INTRON	INTRON	TIMP2	ENSG00000035862.12	ENST00000262768.11:ENST00000536189.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.26756	5.319554999999999	5.37155	8.0232e-6	2.42251e-6	4.54299e-4	1.53938e-4
chr5	138565141	138565239	3615235	0	-	0.428571	(0.424,0.459]	chr5	328349	30	INTRON	INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	5.26756	5.319554999999999	5.37155	8.0232e-6	2.42251e-6	4.54299e-4	1.53938e-4
chr6	145907150	145907250	4226807	0	-	0.37	(0.36,0.392]	chr6	384046	40	UTR3	UTR3:EXON_MRNA:INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	4.24763	5.31905	6.39047	3.80762e-11	3.59155e-11	5.38572e-9	5.15677e-9
chr3	33846587	33846687	1825530	0	+	0.46	(0.459,0.49]	chr3	184769	6	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.51255	5.318239999999999	6.12393	6.3564e-4	1.31318e-10	0.0193151	1.71854e-8
chr15	22511796	22511896	7923061	0	+	0.5	(0.49,0.526]	chr15	731075	158	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	19	2	5.28142	5.31817	5.35492	2.46593e-6	1.0002e-6	1.54892e-4	7.00342e-5
chr1	245044009	245044109	486633	0	+	0.24	[0,0.32]	chr1	51362	133	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000366523.6:ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000473686.5:ENST00000366521.7:ENST00000487845.5:ENST00000549220.5:ENST00000495271.5:ENST00000425550.5:ENST00000551317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.79564	5.31794	5.84024	5.01883e-4	1.72569e-7	0.0161742	1.40017e-5
chr5	43013855	43013955	3458411	0	-	0.29	[0,0.32]	chr5	317985	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000177738	ENSG00000177738.5	ENST00000654466.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	4.79564	5.31794	5.84024	5.01883e-4	1.72569e-7	0.0161742	1.40017e-5
chr21	36876962	36877062	9876300	0	-	0.36	(0.32,0.36]	chr21	979512	1093	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	5.02236	5.317805	5.61325	1.45077e-6	1.56263e-8	9.68953e-5	1.54408e-6
chr1	114772373	114772473	733061	0	-	0.32	[0,0.32]	chr1	78687	30	UTR3	UTR3:EXON_MRNA	SIKE1	ENSG00000052723.12	ENST00000060969.6:ENST00000369528.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.8652	5.3173200000000005	5.76944	4.11137e-4	2.56854e-7	0.0138446	2.02856e-5
chr16	89864850	89864948	8483591	0	+	0.316327	[0,0.32]	chr16	793400	6	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000378247.8:ENST00000393062.6:ENST00000569108.5:ENST00000562029.5:ENST00000565628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.8652	5.3173200000000005	5.76944	4.11137e-4	2.56854e-7	0.0138446	2.02856e-5
chr2	195698048	195698148	1248713	0	+	0.25	[0,0.32]	chr2	130781	138	INTRON	INTRON	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.8652	5.3173200000000005	5.76944	4.11137e-4	2.56854e-7	0.0138446	2.02856e-5
chr2	218512686	218512784	1696959	0	-	0.295918	[0,0.32]	chr2	174212	22	INTRON	INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5:ENST00000486242.1:ENST00000478329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.8652	5.3173200000000005	5.76944	4.11137e-4	2.56854e-7	0.0138446	2.02856e-5
chr2	210646662	210646762	1296831	0	+	0.31	[0,0.32]	chr2	134205	36	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1:ENST00000497121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	5.0915	5.316995	5.54249	6.33171e-12	3.57026e-12	9.964250000000001e-10	5.76452e-10
chr14	39181569	39181666	7607638	0	+	0.494845	(0.49,0.526]	chr14	699950	12	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	971	12489	2	5.31497	5.31572	5.31647	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	123882019	123882119	5730949	0	-	0.47	(0.459,0.49]	chr9	513688	26	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	8	99	2	4.72953	5.315614999999999	5.9017	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	70051560	70051660	3206896	0	+	0.45	(0.424,0.459]	chr5	295810	14	INTRON	INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	4.46516	5.3145299999999995	6.1639	2.35249e-6	1.54441e-10	1.51159e-4	2.03038e-8
chr9	95238490	95238589	5666726	0	-	0.323232	(0.32,0.36]	chr9	507535	33	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1:ENST00000648415.1:ENST00000649872.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	5.07106	5.313815	5.55657	2.228e-12	1e-12	3.70774e-10	1.72912e-10
chr7	129870231	129870330	4843295	0	-	0.343434	(0.32,0.36]	chr7	433926	48	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000486283.1:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	5.1462	5.31316	5.48012	2.68825e-9	2.91207e-11	2.98355e-7	4.19646e-9
chr20	36104202	36104302	9639301	0	+	0.53	(0.526,0.57]	chr20	951847	109	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	4.56307	5.311484999999999	6.0599	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	150404007	150404107	10237640	0	+	0.53	(0.526,0.57]	chrX	1019427	401	INTRON	INTRON	MAMLD1	ENSG00000013619.15	ENST00000468306.1:ENST00000262858.8:ENST00000683453.1:ENST00000426613.5:ENST00000682016.1:ENST00000682253.1:ENST00000683696.1:ENST00000370401.7:ENST00000432680.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	123	2	5.23663	5.3112200000000005	5.38581	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28497066	28497166	10006274	0	-	0.32	[0,0.32]	chr22	996542	541	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	5.10019	5.31107	5.52195	9.14777e-9	1.99332e-11	9.40372e-7	2.93023e-9
chr12	122895251	122895351	7309340	0	-	0.53	(0.526,0.57]	chr12	675025	52	INTRON	INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	4.37952	5.31022	6.24092	5.61359e-10	8.32645e-12	6.8413e-8	1.29188e-9
chr14	103837779	103837879	7919450	0	-	0.44	(0.424,0.459]	chr14	730360	399	INTRON	INTRON	PPP1R13B	ENSG00000088808.18	ENST00000202556.14:ENST00000557082.5:ENST00000556325.1:ENST00000554106.5:ENST00000555734.5:ENST00000554136.1:ENST00000553739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.71424	5.3100950000000005	5.90595	3.07139e-4	1.00338e-8	0.0105767	1.01215e-6
chr17	48100230	48100330	8955711	0	-	0.43	(0.424,0.459]	chr17	861601	3	SS5_PROX	SS5_PROX:INTRON	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5:ENST00000495350.5:ENST00000444685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.71424	5.3100950000000005	5.90595	3.07139e-4	1.00338e-8	0.0105767	1.01215e-6
chr5	173001301	173001400	3393352	0	+	0.444444	(0.424,0.459]	chr5	311332	61	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.71424	5.3100950000000005	5.90595	3.07139e-4	1.00338e-8	0.0105767	1.01215e-6
chr3	52642947	52643047	2284858	0	-	0.45	(0.424,0.459]	chr3	223145	3	SS5_PROX	SS5_PROX:INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.79703	5.30924	5.82145	2.28148e-4	1.92567e-8	0.00827964	1.85307e-6
chr17	39327802	39327902	8925734	0	-	0.53	(0.526,0.57]	chr17	856390	238	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.63387	5.307785	5.9817	2.57391e-4	5.835e-10	0.00911512	7.10688e-8
chr3	195942748	195942847	2528357	0	-	0.525253	(0.49,0.526]	chr3	242233	182	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	29	2	4.70518	5.30536	5.90554	1.2507e-8	1.93601e-9	1.25541e-6	2.18285e-7
chr17	7230997	7231097	8860347	0	-	0.53	(0.526,0.57]	chr17	847276	2	SS3_PROX	SS3_PROX:INTRON	DVL2	ENSG00000004975.12	ENST00000005340.10:ENST00000575458.5:ENST00000575756.5:ENST00000574143.1:ENST00000572285.5:ENST00000576949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	5.19933	5.30372	5.40811	4.16513e-6	6.86579e-7	2.48371e-4	4.92496e-5
chr6	16426563	16426663	4009199	0	-	0.54	(0.526,0.57]	chr6	362972	977	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.19933	5.30372	5.40811	4.16513e-6	6.86579e-7	2.48371e-4	4.92496e-5
chr2	42576236	42576335	1002935	0	+	0.40404	(0.392,0.424]	chr2	108899	54	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000484780.5:ENST00000461256.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000430763.5:ENST00000433553.5:ENST00000493983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	4.86144	5.303635	5.74583	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	144164248	144164348	5101174	0	+	0.56	(0.526,0.57]	chr8	457014	4	SS5_PROX	SS5_PROX:INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000525287.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	5.25987	5.303635	5.3474	2.82947e-6	1.05485e-6	1.75466e-4	7.33447e-5
chr3	12536002	12536102	1771238	0	+	0.41	(0.392,0.424]	chr3	181896	3	SS3_PROX	SS3_PROX:INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.85654	5.3031299999999995	5.74972	1.84333e-4	1.25981e-7	0.00688171	1.05791e-5
chr5	81979310	81979409	3237783	0	+	0.50505	(0.49,0.526]	chr5	299119	26	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000510085.1:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	5.04178	5.302975	5.56417	1.57703e-5	1.40942e-7	8.20905e-4	1.1686e-5
chr3	8906416	8906516	2162461	0	-	0.41	(0.392,0.424]	chr3	211429	35	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000264926.7:ENST00000415439.5:ENST00000473069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.92302	5.302625	5.68223	1.45314e-4	1.931e-7	0.00569484	1.56398e-5
chr1	12609974	12610073	520923	0	-	0.424242	(0.392,0.424]	chr1	56283	138	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	187	2	5.20421	5.301415	5.39862	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149648082	149648182	2470837	0	-	0.43	(0.424,0.459]	chr3	236997	720	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	5.256	5.301295	5.34659	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	171376277	171376377	1611693	0	-	0.43	(0.424,0.459]	chr2	166751	154	INTRON	INTRON	METTL8	ENSG00000123600.21	ENST00000612742.5:ENST00000375258.9:ENST00000447486.5:ENST00000392604.6:ENST00000460188.5:ENST00000392599.6:ENST00000460539.5:ENST00000462821.1:ENST00000442778.5:ENST00000453846.5:ENST00000442541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	4.99595	5.29845	5.60095	1.88138e-9	1e-12	2.13412e-7	1.72912e-10
chr12	11165227	11165327	7087991	0	-	0.41	(0.392,0.424]	chr12	651870	437	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	50	2	4.26517	5.295945	6.32672	6.7808e-12	1e-12	1.05927e-9	1.72912e-10
chr11	122385021	122385121	6766080	0	-	0.43	(0.424,0.459]	chr11	617636	4	SS3_PROX	SS3_PROX:INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	4.96809	5.294935000000001	5.62178	6.10851e-5	2.83203e-7	0.0027377	2.17914e-5
chr14	77729894	77729993	7874856	0	-	0.444444	(0.424,0.459]	chr14	726156	63	INTRON	INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.96809	5.294935000000001	5.62178	6.10851e-5	2.83203e-7	0.0027377	2.17914e-5
chr17	47549426	47549525	8733500	0	+	0.444444	(0.424,0.459]	chr17	829893	7	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.96809	5.294935000000001	5.62178	6.10851e-5	2.83203e-7	0.0027377	2.17914e-5
chr9	95907870	95907970	5438995	0	+	0.45	(0.424,0.459]	chr9	485401	2	INTRON	INTRON	ERCC6L2	ENSG00000182150.19	ENST00000402838.3:ENST00000288985.13:ENST00000683937.1:ENST00000682748.1:ENST00000683991.1:ENST00000682983.1:ENST00000456993.7:ENST00000682394.1:ENST00000683350.1:ENST00000670016.1:ENST00000653738.2:ENST00000659728.1:ENST00000683156.1:ENST00000683176.1:ENST00000683227.1:ENST00000683128.1:ENST00000653324.2:ENST00000661047.1:ENST00000426805.2:ENST00000466840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	5.05139	5.2944949999999995	5.5376	4.27641e-5	4.83052e-7	0.00199812	3.58077e-5
chr3	197271383	197271483	2535047	0	-	0.39	(0.36,0.392]	chr3	243107	2	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	4.94325	5.2942	5.64515	2.68414e-8	1e-12	2.52989e-6	1.72912e-10
chr14	71616064	71616164	7688490	0	+	0.47	(0.459,0.49]	chr14	706612	174	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5	protein_coding	protein_coding	protein_coding	protein_coding	18	221	2	5.24051	5.29404	5.34757	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	51843044	51843144	7978026	0	+	0.5	(0.49,0.526]	chr15	738048	76	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000558455.1:ENST00000308580.12	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	5.18382	5.293645	5.40347	4.41258e-12	1e-12	7.07857e-10	1.72912e-10
chr4	129072616	129072716	3012930	0	-	0.31	[0,0.32]	chr4	282022	282	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5:ENST00000511426.5:ENST00000503401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	4.12383	5.29175	6.45967	1.22114e-7	2.0258e-11	1.03163e-5	2.97161e-9
chrX	72184176	72184273	10161376	0	+	0.515464	(0.49,0.526]	chrX	1012893	19	INTRON	INTRON	PIN4	ENSG00000102309.15	ENST00000373662.4:ENST00000423432.6:ENST00000664196.1:ENST00000218432.10:ENST00000373669.8:ENST00000439980.7:ENST00000652108.2:ENST00000496835.7:ENST00000446576.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	111	2	4.89805	5.29099	5.68393	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	118380749	118380848	10207790	0	+	0.474747	(0.459,0.49]	chrX	1016550	19	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000493448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	5.16672	5.290839999999999	5.41496	7.74288e-6	1e-12	4.39068e-4	1.72912e-10
chr1	45927721	45927821	138431	0	+	0.41	(0.392,0.424]	chr1	16894	98	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.54701	5.290675	6.03434	0.00102713	3.73254e-9	0.0276375	4.03186e-7
chr1	172426066	172426166	804667	0	-	0.4	(0.392,0.424]	chr1	89729	103	INTRON	INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	15	2	4.54701	5.290675	6.03434	0.00102713	3.73254e-9	0.0276375	4.03186e-7
chr10	38436133	38436228	5839910	0	+	0.410526	(0.392,0.424]	chr10	524766	5	INTRON	INTRON	ENSG00000276805	ENSG00000276805.2	ENST00000622550.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	15	2	4.54701	5.290675	6.03434	0.00102713	3.73254e-9	0.0276375	4.03186e-7
chr3	101857659	101857759	1943263	0	+	0.4	(0.392,0.424]	chr3	195975	2	SS5_PROX	SS5_PROX:INTRON	NFKBIZ	ENSG00000144802.11	ENST00000394054.6:ENST00000326172.9:ENST00000326151.9:ENST00000477601.1:ENST00000495089.1:ENST00000495719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	3.69229	5.290385000000001	6.88848	3.72291e-6	1e-12	2.27625e-4	1.73382e-10
chr4	169231738	169231838	3085316	0	-	0.37	(0.36,0.392]	chr4	285589	747	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	4.2635	5.29026	6.31702	4.58367e-7	7.38095e-11	3.4135e-5	1.00784e-8
chr1	88785417	88785510	227590	0	+	0.344086	(0.32,0.36]	chr1	22811	2	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9:ENST00000436111.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.42963	5.29023	6.15083	0.00312289	1.52443e-9	0.0697855	1.74447e-7
chr12	101715762	101715855	6999445	0	+	0.430108	(0.424,0.459]	chr12	639748	3	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	128	2	4.69221	5.28993	5.88765	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	26054544	26054639	6848931	0	+	0.547368	(0.526,0.57]	chr12	625671	12	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5:ENST00000542004.5:ENST00000542315.5:ENST00000282884.13:ENST00000541218.5:ENST00000537946.5:ENST00000545413.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.09465	5.288164999999999	5.48168	1.16684e-5	2.6732e-7	6.16746e-4	2.09843e-5
chr7	47384109	47384209	4713939	0	-	0.53	(0.526,0.57]	chr7	422629	141	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	5.09465	5.288164999999999	5.48168	1.16684e-5	2.6732e-7	6.16746e-4	2.09843e-5
chr2	84989840	84989940	1082776	0	+	0.43	(0.424,0.459]	chr2	115507	172	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	13	107	2	4.10652	5.288075	6.46963	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	16372900	16372999	57402	0	+	0.424242	(0.392,0.424]	chr1	5650	45	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	4.89327	5.28775	5.68223	1.931e-7	3.77123e-8	1.56398e-5	3.4456e-6
chr12	116205049	116205149	7290970	0	-	0.42	(0.392,0.424]	chr12	672490	932	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.89327	5.28775	5.68223	1.931e-7	3.77123e-8	1.56398e-5	3.4456e-6
chr16	75390482	75390581	8604329	0	-	0.50505	(0.49,0.526]	chr16	811161	94	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000612761.1:ENST00000569341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	4.89039	5.28751	5.68463	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	80649454	80649554	4451891	0	+	0.34	(0.32,0.36]	chr7	400042	22	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000309881.11:ENST00000534394.5:ENST00000438020.5:ENST00000436384.5:ENST00000428497.5:ENST00000433696.6:ENST00000538969.5:ENST00000544133.5:ENST00000447544.7:ENST00000441109.6:ENST00000482059.6:ENST00000394788.7:ENST00000432207.5:ENST00000426978.5:ENST00000413265.5:ENST00000419819.2:ENST00000441034.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	74	2	5.16901	5.286785	5.40456	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	179035197	179035297	2501075	0	-	0.48	(0.459,0.49]	chr3	239331	38	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1:ENST00000311417.7:ENST00000432729.5:ENST00000414084.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.65177	5.286215	5.92066	5.56898e-8	2.70029e-9	5.02653e-6	2.98805e-7
chr11	76538727	76538820	6451800	0	+	0.473118	(0.459,0.49]	chr11	582821	4	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5:ENST00000524451.1:ENST00000531641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.76501	5.28609	5.80717	1.46149e-4	1.22616e-8	0.00564049	1.22232e-6
chr12	58909083	58909183	7184241	0	-	0.49	(0.459,0.49]	chr12	663683	179	INTRON	INTRON	LRIG3	ENSG00000139263.12	ENST00000379141.8:ENST00000320743.8:ENST00000433272.6:ENST00000552267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.76501	5.28609	5.80717	1.46149e-4	1.22616e-8	0.00564049	1.22232e-6
chr14	30963557	30963656	7793082	0	-	0.484848	(0.459,0.49]	chr14	717578	70	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.76501	5.28609	5.80717	1.46149e-4	1.22616e-8	0.00564049	1.22232e-6
chr5	150502339	150502439	3357349	0	+	0.46	(0.459,0.49]	chr5	308673	37	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.76501	5.28609	5.80717	1.46149e-4	1.22616e-8	0.00564049	1.22232e-6
chr7	105560368	105560467	4503578	0	+	0.464646	(0.459,0.49]	chr7	405828	48	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000257700.7:ENST00000497979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.76501	5.28609	5.80717	1.46149e-4	1.22616e-8	0.00564049	1.22232e-6
chr14	69346340	69346439	7679270	0	+	0.383838	(0.36,0.392]	chr14	706037	42	INTRON	INTRON	GALNT16	ENSG00000100626.17	ENST00000337827.8:ENST00000448469.8:ENST00000553471.6:ENST00000553669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	162	2	5.27621	5.285875	5.29554	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	9585426	9585526	10078620	0	+	0.49	(0.459,0.49]	chrX	1005254	245	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.83271	5.285475	5.73824	1.09213e-4	2.1921e-8	0.00442392	2.0899e-6
chr7	70498029	70498129	4415708	0	+	0.45	(0.424,0.459]	chr7	397021	603	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.74933	5.28539	5.82145	9.96009e-8	1.92567e-8	8.4812e-6	1.85307e-6
chr2	203521192	203521291	1675838	0	-	0.494949	(0.49,0.526]	chr2	172346	255	INTRON	INTRON	RAPH1	ENSG00000173166.18	ENST00000457812.5:ENST00000319170.10:ENST00000630330.2:ENST00000308091.8:ENST00000453034.5:ENST00000428637.5:ENST00000420371.2:ENST00000465669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	4.38916	5.28528	6.1814	6.34142e-7	2.69895e-11	4.61699e-5	3.91566e-9
chr4	183848532	183848632	2805611	0	+	0.52	(0.49,0.526]	chr4	265317	501	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	4.82576	5.285005	5.74425	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	14043084	14043183	9781470	0	+	0.40404	(0.392,0.424]	chr21	970280	151	INTRON	INTRON	ENSG00000224905	ENSG00000224905.8	ENST00000690295.1:ENST00000448463.3:ENST00000653756.2:ENST00000428809.5:ENST00000432621.5	lncRNA	lncRNA	lncRNA	lncRNA	8	62	2	4.19491	5.28434	6.37377	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	67653384	67653483	10147591	0	+	0.414141	(0.392,0.424]	chrX	1011547	96	INTRON	INTRON	AR	ENSG00000169083.18	ENST00000612452.5:ENST00000374690.9:ENST00000504326.5:ENST00000514029.5:ENST00000613054.2:ENST00000513847.5:ENST00000396044.8:ENST00000396043.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	4.53319	5.283765000000001	6.03434	1.61757e-6	3.73254e-9	1.08646e-4	4.03186e-7
chr15	34342685	34342763	8125711	0	-	0.474359	(0.459,0.49]	chr15	751666	2	SS5_PROX	SS5_PROX:INTRON	NOP10	ENSG00000182117.6	ENST00000328848.6:ENST00000557912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.16672	5.283704999999999	5.40069	7.74288e-6	1.15324e-6	4.39068e-4	7.95154e-5
chr4	2711744	2711844	2548328	0	+	0.49	(0.459,0.49]	chr4	244921	31	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.16672	5.283704999999999	5.40069	7.74288e-6	1.15324e-6	4.39068e-4	7.95154e-5
chr11	3818333	3818432	6303017	0	+	0.464646	(0.459,0.49]	chr11	565268	4	INTRON	INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000524661.5:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1:ENST00000529944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	5.23503	5.283605	5.33218	5.25256e-6	1.78412e-6	3.11102e-4	1.1709e-4
chr15	92787167	92787266	8276032	0	-	0.484848	(0.459,0.49]	chr15	768879	47	INTRON	INTRON	FAM174B	ENSG00000185442.13	ENST00000557398.2:ENST00000555971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.23503	5.283605	5.33218	5.25256e-6	1.78412e-6	3.11102e-4	1.1709e-4
chr7	117081849	117081949	4524286	0	+	0.48	(0.459,0.49]	chr7	407317	48	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	5.23503	5.283605	5.33218	5.25256e-6	1.78412e-6	3.11102e-4	1.1709e-4
chr6	30067479	30067542	3751559	0	+	0.650794	(0.629,1]	chr6	340459	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	4.7885	5.28341	5.77832	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	128752240	128752339	1987028	0	+	0.282828	[0,0.32]	chr3	199799	255	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	5.15813	5.2832349999999995	5.40834	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	62329997	62330096	6929790	0	+	0.30303	[0,0.32]	chr12	634220	12	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	5.02166	5.282075	5.54249	6.33171e-12	1e-12	9.964250000000001e-10	1.72912e-10
chr3	121668844	121668932	2404461	0	-	0.397727	(0.392,0.424]	chr3	230440	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695035.1:ENST00000695006.1:ENST00000695014.1:ENST00000695005.1:ENST00000695004.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000694981.1:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000695007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	4.25372	5.281655000000001	6.30959	2.90267e-5	3.72697e-11	0.00141183	5.32557e-9
chr20	36856083	36856183	9738350	0	-	0.58	(0.57,0.629]	chr20	964526	163	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.90922	5.2810749999999995	5.65293	2.31977e-8	2.65774e-10	2.19827e-6	3.37369e-8
chr8	61678889	61678988	5179987	0	-	0.484848	(0.459,0.49]	chr8	464298	22	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	4.32922	5.280995000000001	6.23277	1.5193e-11	1.44494e-11	2.28241e-9	2.19068e-9
chr5	37055511	37055609	3151711	0	+	0.408163	(0.392,0.424]	chr5	291335	26	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000514335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	194	2	4.94493	5.280545	5.61616	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	107558860	107558959	1947084	0	+	0.393939	(0.392,0.424]	chr3	196164	321	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	4.88766	5.2800650000000005	5.67247	5.27445e-12	1e-12	8.38002e-10	1.72912e-10
chr21	32587112	32587212	9857657	0	-	0.62	(0.57,0.629]	chr21	978415	4	SS5_PROX	SS5_PROX:INTRON	TCP10L	ENSG00000242220.9	ENST00000582575.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	5.24671	5.279755	5.3128	2.15311e-6	9.9438e-7	1.3963e-4	7.00342e-5
chr12	123511266	123511366	7314338	0	-	0.52	(0.49,0.526]	chr12	675726	114	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	100	2	4.62321	5.279590000000001	5.93597	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59617989	59618089	3478431	0	-	0.27	[0,0.32]	chr5	319265	316	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	5.0915	5.2793600000000005	5.46722	3.57026e-12	1e-12	5.76452e-10	1.73382e-10
chr10	121836117	121836217	6276536	0	-	0.44	(0.424,0.459]	chr10	561646	455	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000485281.2:ENST00000692087.1:ENST00000690415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	275	2	4.99066	5.2791049999999995	5.56755	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	37031795	37031895	3151459	0	+	0.3	[0,0.32]	chr5	291284	40	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	4.71495	5.277595	5.84024	1.72569e-7	1.57473e-9	1.40017e-5	1.79997e-7
chr20	8543127	8543227	9567756	0	+	0.28	[0,0.32]	chr20	947085	1711	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.39782	5.27747	6.15712	0.00334699	3.56277e-9	0.0734189	3.88104e-7
chr5	123119234	123119334	3302843	0	+	0.3	[0,0.32]	chr5	303280	189	INTRON	INTRON	PRDM6	ENSG00000061455.11	ENST00000407847.5:ENST00000434521.1:ENST00000464424.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.39782	5.27747	6.15712	0.00334699	3.56277e-9	0.0734189	3.88104e-7
chr1	32371718	32371817	561759	0	-	0.606061	(0.57,0.629]	chr1	63056	20	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000463967.1:ENST00000373520.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	3.91529	5.276905	6.63852	2.43299e-7	1e-12	1.91066e-5	1.73382e-10
chr7	131018367	131018467	4848303	0	-	0.64	(0.629,1]	chr7	434475	82	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	113	2	5.25442	5.276719999999999	5.29902	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	87901474	87901571	4455594	0	+	0.350515	(0.32,0.36]	chr7	400472	2	INTRON	INTRON	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5:ENST00000430279.5:ENST00000498144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	4.63488	5.275824999999999	5.91677	2.94198e-9	1e-12	3.24824e-7	1.72912e-10
chr13	48454806	48454906	7376846	0	+	0.46	(0.459,0.49]	chr13	681724	13	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1:ENST00000480491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	4.4955	5.275125	6.05475	5.33756e-7	2.70956e-10	3.92587e-5	3.40943e-8
chr22	35269594	35269694	9936850	0	+	0.33	(0.32,0.36]	chr22	987288	36	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	4.85094	5.274965	5.69899	3.81705e-7	2.73185e-7	2.90385e-5	2.11622e-5
chr18	79146149	79146248	9156706	0	+	0.666667	(0.629,1]	chr18	882393	19	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.68563	5.274675	5.86372	1.13329e-4	7.95775e-10	0.00463413	9.50879e-8
chr12	64635728	64635828	6938230	0	+	0.51	(0.49,0.526]	chr12	635121	242	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	4.46206	5.27292	6.08378	1.41626e-10	1e-12	1.87712e-8	1.72912e-10
chr17	43271555	43271655	8938177	0	-	0.66	(0.629,1]	chr17	859071	414	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	31	690	2	5.26271	5.270985	5.27926	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	108772179	108772275	1115770	0	+	0.333333	(0.32,0.36]	chr2	119659	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	4.48183	5.27097	6.06011	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	110398047	110398146	7277014	0	-	0.515152	(0.49,0.526]	chr12	670649	12	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000464697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.92941	5.27074	5.61207	4.32628e-5	6.35974e-8	0.00200309	5.62451e-6
chr10	38116389	38116489	5838996	0	+	0.31	[0,0.32]	chr10	524645	7	INTRON	INTRON	ZNF37A	ENSG00000075407.19	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.10715	5.27036	5.43357	7.53496e-5	8.40147e-6	0.00322158	4.71048e-4
chr4	89801349	89801449	2957594	0	-	0.28	[0,0.32]	chr4	277924	295	INTRON	INTRON	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.10715	5.27036	5.43357	7.53496e-5	8.40147e-6	0.00322158	4.71048e-4
chrX	31242494	31242594	10300821	0	-	0.32	[0,0.32]	chrX	1024298	19	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000378723.7:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000680557.1:ENST00000620040.5:ENST00000680768.2:ENST00000683709.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000681153.1:ENST00000683957.1:ENST00000681654.1:ENST00000681334.1:ENST00000681646.1:ENST00000681870.1:ENST00000680216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	5.10715	5.27036	5.43357	7.53496e-5	8.40147e-6	0.00322158	4.71048e-4
chr5	133068726	133068821	3319159	0	+	0.315789	[0,0.32]	chr5	304517	8	INTRON	INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.1772	5.270195	5.36319	5.87341e-5	1.13263e-5	0.00262682	6.25152e-4
chr7	77769303	77769401	4442513	0	+	0.265306	[0,0.32]	chr7	399685	1	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5:ENST00000445512.5:ENST00000468035.1:ENST00000462800.1:ENST00000441514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	5.1772	5.270195	5.36319	5.87341e-5	1.13263e-5	0.00262682	6.25152e-4
chr9	78025715	78025815	5638811	0	-	0.31	[0,0.32]	chr9	505007	1030	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.1772	5.270195	5.36319	5.87341e-5	1.13263e-5	0.00262682	6.25152e-4
chrX	24181867	24181967	10104707	0	+	0.35	(0.32,0.36]	chrX	1007471	17	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	4.73736	5.269785	5.80221	5.18532e-7	2.13657e-7	3.83329e-5	1.69216e-5
chr18	79734305	79734403	9161122	0	+	0.479592	(0.459,0.49]	chr18	882748	49	INTRON	INTRON	CTDP1	ENSG00000060069.18	ENST00000613122.5:ENST00000075430.11:ENST00000591598.5:ENST00000299543.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.4153	5.269615	6.12393	8.98032e-7	1.31318e-10	6.37943e-5	1.71854e-8
chr10	23868106	23868206	5814906	0	+	0.46	(0.459,0.49]	chr10	523107	1725	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000481700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.51255	5.269215	6.02588	6.3564e-4	5.95023e-10	0.0193151	7.22535e-8
chr5	110747571	110747662	3274193	0	+	0.362637	(0.36,0.392]	chr5	301460	9	INTRON	INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	4.73928	5.2669049999999995	5.79453	5.12952e-7	9.49031e-8	3.78931e-5	8.06088e-6
chrX	63379784	63379884	10355703	0	-	0.47	(0.459,0.49]	chrX	1028584	286	INTRON	INTRON	LINC01278	ENSG00000235437.9	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	4.88631	5.2660800000000005	5.64585	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	29548237	29548337	8542137	0	-	0.49	(0.459,0.49]	chr16	803544	3	SS5_PROX	SS5_PROX:INTRON	SMG1P2	ENSG00000205534.6	ENST00000566127.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	17	2	4.97981	5.264545	5.54928	3.36273e-5	2.53394e-7	0.00159406	1.97194e-5
chr3	13366689	13366788	2180981	0	-	0.464646	(0.459,0.49]	chr3	212942	2	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.97981	5.264545	5.54928	3.36273e-5	2.53394e-7	0.00159406	1.97194e-5
chr5	108964445	108964545	3269933	0	+	0.46	(0.459,0.49]	chr5	301252	47	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1:ENST00000505323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.97981	5.264545	5.54928	3.36273e-5	2.53394e-7	0.00159406	1.97194e-5
chr11	75407901	75408000	6446368	0	+	0.343434	(0.32,0.36]	chr11	582474	11	INTRON	INTRON	RPS3	ENSG00000149273.15	ENST00000527446.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.7265	5.264355	5.80221	6.12159e-4	2.13657e-7	0.0189985	1.69216e-5
chr14	49862649	49862749	7818596	0	-	0.63	(0.629,1]	chr14	719843	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS3_PROX:INTRON	ENSG00000282885:RN7SL2	ENSG00000282885.2:ENSG00000274012.1	ENST00000635177.1:ENST00000668702.1:ENST00000659240.1:ENST00000655317.1:ENST00000634923.1:ENST00000490232.3	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	55	1192	2	4.93972	5.264315	5.58891	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	68063297	68063397	6151370	0	-	0.49	(0.459,0.49]	chr10	550298	184	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.04785	5.264225	5.4806	2.39418e-5	4.11395e-7	0.00119556	3.09732e-5
chr14	77297527	77297622	7871946	0	-	0.473684	(0.459,0.49]	chr14	725748	9	INTRON	INTRON	POMT2	ENSG00000009830.13	ENST00000261534.9:ENST00000452340.7:ENST00000554767.5:ENST00000556394.2:ENST00000682955.1:ENST00000683380.1:ENST00000682467.1:ENST00000682395.1:ENST00000682795.1:ENST00000682247.1:ENST00000682895.1:ENST00000684259.1:ENST00000684549.1:ENST00000683188.1:ENST00000682459.1:ENST00000683828.1:ENST00000682382.1:ENST00000683328.1:ENST00000683300.1:ENST00000684554.1:ENST00000557289.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	5.04785	5.264225	5.4806	2.39418e-5	4.11395e-7	0.00119556	3.09732e-5
chr3	88076031	88076131	2364320	0	-	0.33	(0.32,0.36]	chr3	227358	171	INTRON	INTRON	CGGBP1	ENSG00000163320.12	ENST00000462901.5:ENST00000467332.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.82783	5.26341	5.69899	4.57616e-4	3.81705e-7	0.0150584	2.90385e-5
chr9	17190735	17190834	5341935	0	+	0.343434	(0.32,0.36]	chr9	477700	223	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8:ENST00000380641.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.82783	5.26341	5.69899	4.57616e-4	3.81705e-7	0.0150584	2.90385e-5
chrX	77553555	77553655	10382782	0	-	0.37	(0.36,0.392]	chrX	1030369	298	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000623706.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	4.65899	5.263285	5.86758	5.98276e-8	1.05595e-9	5.2159e-6	1.2432e-7
chr2	74660937	74661037	1080507	0	+	0.39	(0.36,0.392]	chr2	115205	26	INTRON	INTRON	SEMA4F	ENSG00000135622.13	ENST00000611975.4:ENST00000357877.7:ENST00000420077.5:ENST00000458114.5:ENST00000339773.9:ENST00000434486.5:ENST00000453930.5:ENST00000446927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.65673	5.262155	5.86758	7.48315e-4	5.98276e-8	0.0220209	5.2159e-6
chr7	80595949	80596049	4451344	0	+	0.39	(0.36,0.392]	chr7	399992	488	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.65673	5.262155	5.86758	7.48315e-4	5.98276e-8	0.0220209	5.2159e-6
chr12	22466511	22466610	7107584	0	-	0.313131	[0,0.32]	chr12	653373	27	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000539615.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	5.10715	5.2616499999999995	5.41615	7.53496e-5	1.29208e-10	0.00322158	1.69913e-8
chr2	205253917	205254016	1281631	0	+	0.414141	(0.392,0.424]	chr2	132933	77	INTRON	INTRON	PARD3B	ENSG00000116117.19	ENST00000406610.7:ENST00000349953.7:ENST00000351153.5:ENST00000358768.6:ENST00000613457.4:ENST00000614500.3:ENST00000622699.2	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	4.64073	5.258995	5.87726	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155561452	155561552	777436	0	-	0.38	(0.36,0.392]	chr1	85749	395	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.83113	5.258965	6.6868	6.41601e-4	1e-12	0.0193935	1.72912e-10
chr15	66503260	66503357	8220894	0	-	0.360825	(0.36,0.392]	chr15	762846	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	4.73262	5.258755	5.78489	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155687372	155687471	777756	0	-	0.373737	(0.36,0.392]	chr1	85824	66	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	5.2225	5.258710000000001	5.29492	2.06042e-5	1.51392e-5	0.00103061	7.85619e-4
chr10	31029636	31029736	6099057	0	-	0.39	(0.36,0.392]	chr10	546673	303	INTRON	INTRON	ZNF438	ENSG00000183621.15	ENST00000436087.7:ENST00000413025.5:ENST00000442986.5:ENST00000452305.5:ENST00000375311.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.2225	5.258710000000001	5.29492	2.06042e-5	1.51392e-5	0.00103061	7.85619e-4
chr17	47023886	47023983	8731077	0	+	0.371134	(0.36,0.392]	chr17	829577	16	INTRON	INTRON	LRRC37A17P	ENSG00000263142.5	ENST00000570478.5:ENST00000570311.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	12	2	5.2225	5.258710000000001	5.29492	2.06042e-5	1.51392e-5	0.00103061	7.85619e-4
chr19	49603311	49603410	9375557	0	+	0.383838	(0.36,0.392]	chr19	913438	10	INTRON	INTRON	PRR12	ENSG00000126464.15	ENST00000418929.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.2225	5.258710000000001	5.29492	2.06042e-5	1.51392e-5	0.00103061	7.85619e-4
chr7	39780302	39780402	4372714	0	+	0.39	(0.36,0.392]	chr7	394076	4	SS3_PROX	SS3_PROX:INTRON	LINC00265	ENSG00000188185.13	ENST00000666283.1:ENST00000674829.1:ENST00000675279.1:ENST00000340510.8:ENST00000656391.1:ENST00000658784.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	5.2225	5.258710000000001	5.29492	2.06042e-5	1.51392e-5	0.00103061	7.85619e-4
chr3	120408734	120408833	2403050	0	-	0.454545	(0.424,0.459]	chr3	230241	34	INTRON	INTRON	FSTL1	ENSG00000163430.12	ENST00000295633.8:ENST00000424703.6:ENST00000468098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	4.45848	5.2585049999999995	6.05853	5.48586e-9	7.70458e-10	5.79354e-7	9.22745e-8
chr8	25384757	25384856	4951570	0	+	0.464646	(0.459,0.49]	chr8	443552	16	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	4.30077	5.25826	6.21575	5.87352e-9	2.91337e-11	6.19811e-7	4.19646e-9
chr8	94422015	94422115	5219958	0	-	0.32	[0,0.32]	chr8	467085	103	INTRON	INTRON	FSBP	ENSG00000265817.4	ENST00000517506.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	24	2	5.17798	5.2581050000000005	5.33823	5.34166e-9	2.44269e-10	5.66355e-7	3.11038e-8
chr3	152487758	152487858	2475205	0	-	0.48	(0.459,0.49]	chr3	237273	292	INTRON	INTRON	ENSG00000243305	ENSG00000243305.1	ENST00000463255.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	4.13232	5.25792	6.38352	1.41387e-5	1.10534e-12	7.54814e-4	1.89699e-10
chr17	3499088	3499186	8632493	0	+	0.397959	(0.392,0.424]	chr17	814918	1	UTR3	UTR3:EXON_MRNA	ASPA	ENSG00000108381.11	ENST00000263080.3	protein_coding	protein_coding	protein_coding	protein_coding	10	94	2	5.15606	5.2577750000000005	5.35949	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	47925318	47925417	8954900	0	-	0.585859	(0.57,0.629]	chr17	861478	64	INTRON	INTRON	SP2-AS1	ENSG00000234494.8	ENST00000585280.5:ENST00000451140.6:ENST00000411573.7:ENST00000433001.1	lncRNA	lncRNA	lncRNA	lncRNA	1	33	2	4.28733	5.25746	6.22759	8.34421e-7	4.86144e-12	5.98026e-5	7.77128e-10
chr16	4109651	4109751	8500610	0	-	0.47	(0.459,0.49]	chr16	796874	556	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	5.1136	5.257054999999999	5.40051	9.08458e-11	1e-12	1.22932e-8	1.73382e-10
chrX	110159444	110159544	10202297	0	+	0.53	(0.526,0.57]	chrX	1016058	142	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.90802	5.25627	5.60452	4.81512e-5	6.77869e-8	0.00220626	5.95616e-6
chr5	138404091	138404190	3329159	0	+	0.373737	(0.36,0.392]	chr5	305635	37	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.4918	5.254455	6.01711	4.36875e-6	9.48035e-9	2.58808e-4	9.6816e-7
chr10	73588789	73588888	6166465	0	-	0.40404	(0.392,0.424]	chr10	552250	121	INTRON	INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000687698.1:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000691043.1:ENST00000681793.1:ENST00000687418.1:ENST00000680396.1:ENST00000451492.5:ENST00000413442.5:ENST00000433394.1:ENST00000498213.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr11	46097622	46097722	6598760	0	-	0.41	(0.392,0.424]	chr11	600290	50	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr17	46221880	46221980	8949629	0	-	0.42	(0.392,0.424]	chr17	860889	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2:ENST00000639520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr8	70236223	70236323	5188849	0	-	0.4	(0.392,0.424]	chr8	465118	191	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000519724.1:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr8	73733298	73733397	5195117	0	-	0.414141	(0.392,0.424]	chr8	465450	238	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000519818.5:ENST00000522061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr8	89638628	89638728	5211839	0	-	0.42	(0.392,0.424]	chr8	466484	90	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	5.11125	5.25302	5.39479	3.31137e-5	4.26975e-6	0.00159224	2.57151e-4
chr14	91803919	91804019	7899291	0	-	0.42	(0.392,0.424]	chr14	727757	11	INTRON	INTRON	TC2N	ENSG00000165929.13	ENST00000435962.7:ENST00000340892.9:ENST00000360594.9:ENST00000556018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.1781	5.252885	5.32767	2.48959e-5	5.95442e-6	0.00122627	3.4453e-4
chr2	159753170	159753269	1191642	0	+	0.424242	(0.392,0.424]	chr2	125310	2	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.1781	5.252885	5.32767	2.48959e-5	5.95442e-6	0.00122627	3.4453e-4
chr8	41962454	41962553	5161189	0	-	0.40404	(0.392,0.424]	chr8	462350	42	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	5.1781	5.252885	5.32767	2.48959e-5	5.95442e-6	0.00122627	3.4453e-4
chr6	15309740	15309840	3718344	0	+	0.5	(0.49,0.526]	chr6	337965	604	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	4.99257	5.251735	5.5109	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	142844201	142844299	2460406	0	-	0.346939	(0.32,0.36]	chr3	236363	5	INTRON	INTRON	PCOLCE2	ENSG00000163710.9	ENST00000295992.8:ENST00000648195.1:ENST00000485766.1:ENST00000480473.5:ENST00000483986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	4.58302	5.249895	5.91677	1.75027e-11	1e-12	2.60849e-9	1.72912e-10
chr17	11981217	11981316	8874055	0	-	0.484848	(0.459,0.49]	chr17	849267	21	INTRON	INTRON	ZNF18	ENSG00000154957.14	ENST00000580306.7:ENST00000322748.7:ENST00000580613.5:ENST00000454073.7:ENST00000577671.5:ENST00000582607.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.23503	5.24976	5.26449	5.25256e-6	2.71516e-12	3.11102e-4	4.4884e-10
chr4	186693976	186694076	3106212	0	-	0.47	(0.459,0.49]	chr4	287626	300	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	5.23503	5.24976	5.26449	5.25256e-6	2.71516e-12	3.11102e-4	4.4884e-10
chr2	224554796	224554896	1705909	0	-	0.38	(0.36,0.392]	chr2	175493	188	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	92	2	5.18465	5.24802	5.31139	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	558019	558119	5316247	0	+	0.46	(0.459,0.49]	chr9	475861	79	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000688973.1:ENST00000687982.1:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000692174.1:ENST00000693552.1:ENST00000685947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	163	2	4.33414	5.2479499999999994	6.16176	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	67053332	67053432	5185487	0	-	0.4	(0.392,0.424]	chr8	464712	16	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	5.16055	5.2477	5.33485	4.63789e-10	4.44158e-11	5.6824e-8	6.22225e-9
chr6	108630168	108630268	3845869	0	+	0.44	(0.424,0.459]	chr6	352132	680	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	5.00755	5.24655	5.48555	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	31543767	31543864	9623212	0	+	0.515464	(0.49,0.526]	chr20	949664	22	INTRON	INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	5.20683	5.244125	5.28142	3.9703e-6	2.46593e-6	2.39291e-4	1.54892e-4
chr3	149047047	149047143	2468836	0	-	0.291667	[0,0.32]	chr3	236787	4	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.64799	5.244115	5.84024	2.00168e-6	1.72569e-7	1.30649e-4	1.40017e-5
chr8	53990816	53990914	5170585	0	-	0.306122	[0,0.32]	chr8	463598	22	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	4.64799	5.244115	5.84024	2.00168e-6	1.72569e-7	1.30649e-4	1.40017e-5
chr2	95145895	95145994	1510457	0	-	0.555556	(0.526,0.57]	chr2	156564	10	UTR3	UTR3:EXON_MRNA:INTRON	MRPS5:ZNF514	ENSG00000144029.13:ENSG00000144026.13	ENST00000695456.1:ENST00000695457.1:ENST00000475040.1:ENST00000695481.1:ENST00000295208.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	4.76892	5.24332	5.71772	1.72001e-8	7.20291e-9	1.66972e-6	7.48166e-7
chr15	78455240	78455340	8047930	0	+	0.45	(0.424,0.459]	chr15	743819	150	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	53	2	4.71718	5.24308	5.76898	3.1417e-11	1e-12	4.5174e-9	1.72912e-10
chr3	136852155	136852254	2012627	0	+	0.444444	(0.424,0.459]	chr3	202151	90	INTRON	INTRON	SLC35G2	ENSG00000168917.9	ENST00000393079.3:ENST00000446465.3	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.79703	5.241765	5.6865	2.28148e-4	9.64047e-8	0.00827964	8.13052e-6
chr6	17948807	17948907	4015463	0	-	0.45	(0.424,0.459]	chr6	363400	503	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	4.79703	5.241765	5.6865	2.28148e-4	9.64047e-8	0.00827964	8.13052e-6
chr12	15477980	15478079	6830903	0	+	0.474747	(0.459,0.49]	chr12	624359	674	INTRON	INTRON	PTPRO	ENSG00000151490.15	ENST00000674316.1:ENST00000674391.1:ENST00000674186.1:ENST00000674188.1:ENST00000281171.9:ENST00000543886.6:ENST00000348962.7:ENST00000674261.1:ENST00000674286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	4.93728	5.2411	5.54492	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	53017010	53017110	6913291	0	+	0.47	(0.459,0.49]	chr12	630548	4	SS5_PROX	SS5_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	4.0895	5.240355	6.39121	1.7943e-7	1e-12	1.45035e-5	1.73382e-10
chr12	110399142	110399242	7277025	0	-	0.52	(0.49,0.526]	chr12	670649	23	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000464697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	3.9433	5.239895	6.53649	5.12922e-7	1e-12	3.78931e-5	1.73382e-10
chr20	35637397	35637496	9735167	0	-	0.494949	(0.49,0.526]	chr20	964032	41	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	79	2	4.82576	5.23967	5.65358	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	77732296	77732393	664830	0	-	0.391753	(0.36,0.392]	chr1	72608	12	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000370792.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.96718	5.239615000000001	5.51205	1.24104e-4	2.39077e-6	0.0049353	1.5204e-4
chr17	4839833	4839933	8634571	0	+	0.38	(0.36,0.392]	chr17	815446	58	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.96718	5.239615000000001	5.51205	1.24104e-4	2.39077e-6	0.0049353	1.5204e-4
chr2	216144899	216144998	1309287	0	+	0.424242	(0.392,0.424]	chr2	134624	32	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	78	2	4.93845	5.23931	5.54017	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	75816161	75816261	7397177	0	+	0.38	(0.36,0.392]	chr13	683296	66	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.03921	5.239285	5.43936	9.59768e-5	3.42448e-6	0.00399331	2.10826e-4
chr6	125988583	125988683	3872390	0	+	0.41	(0.392,0.424]	chr6	354135	10	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	4.96492	5.239215	5.51351	1.3437e-12	1.32427e-12	2.28243e-10	2.25469e-10
chr20	9411036	9411088	9575542	0	+	0.384615	(0.36,0.392]	chr20	947494	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PLCB4	ENSG00000101333.19	ENST00000378501.3:ENST00000378493.6:ENST00000685110.1:ENST00000687765.1:ENST00000688837.1:ENST00000686871.1:ENST00000685148.1:ENST00000414679.7:ENST00000688325.1:ENST00000693502.1:ENST00000693544.1:ENST00000693752.1:ENST00000687299.1:ENST00000685859.1:ENST00000686584.1:ENST00000689910.1:ENST00000685298.1:ENST00000378473.9:ENST00000690729.1:ENST00000691007.1:ENST00000686313.1:ENST00000684997.1:ENST00000687446.1:ENST00000686976.1:ENST00000685823.1:ENST00000686117.1:ENST00000685568.1:ENST00000692085.1:ENST00000690960.1:ENST00000693492.1:ENST00000689010.1:ENST00000686163.1:ENST00000693160.1:ENST00000691112.1:ENST00000686893.1:ENST00000685482.1:ENST00000686532.1:ENST00000685446.1:ENST00000686253.1:ENST00000692395.1:ENST00000693090.1:ENST00000693005.1:ENST00000685310.1:ENST00000688656.1:ENST00000278655.9:ENST00000492632.5:ENST00000689392.1:ENST00000464199.5:ENST00000473151.5:ENST00000482123.1:ENST00000687147.1:ENST00000689976.1:ENST00000688465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	4.08645	5.23846	6.39047	1.23682e-4	3.80762e-11	0.0049353	5.38572e-9
chr19	18007276	18007371	9305176	0	+	0.694737	(0.629,1]	chr19	901161	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ARRDC2	ENSG00000105643.11	ENST00000379656.7:ENST00000595712.6:ENST00000600788.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.68563	5.238325	5.79102	1.13329e-4	2.26028e-9	0.00463413	2.53515e-7
chr6	165981807	165981907	4270572	0	-	0.3	[0,0.32]	chr6	386948	315	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	129	2	4.73055	5.238265	5.74598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	123512360	123512459	7314349	0	-	0.525253	(0.49,0.526]	chr12	675726	125	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	91	2	5.14228	5.23758	5.33288	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	13810490	13810589	9583140	0	+	0.464646	(0.459,0.49]	chr20	947993	12	INTRON	INTRON	NDUFAF5	ENSG00000101247.18	ENST00000378081.9:ENST00000378106.10:ENST00000463598.1:ENST00000475968.5:ENST00000481249.5:ENST00000476536.5:ENST00000479716.5:ENST00000487478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	70	2	4.97589	5.237254999999999	5.49862	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	12551836	12551936	7090659	0	-	0.5	(0.49,0.526]	chr12	652089	300	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1:ENST00000536236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	5.04178	5.235745	5.42971	1.57703e-5	5.89334e-7	8.20905e-4	4.28084e-5
chr17	46541420	46541520	8950808	0	-	0.5	(0.49,0.526]	chr17	860980	26	INTRON	INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.04178	5.235745	5.42971	1.57703e-5	5.89334e-7	8.20905e-4	4.28084e-5
chr15	50931371	50931471	7976404	0	+	0.5	(0.49,0.526]	chr15	737876	4	SS5_PROX	SS5_PROX:INTRON	AP4E1	ENSG00000081014.11	ENST00000561441.5:ENST00000561393.5:ENST00000558439.5:ENST00000261842.10:ENST00000560508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	5.11613	5.235525	5.35492	1.03252e-5	1.0002e-6	5.57702e-4	7.00342e-5
chr2	112514181	112514281	1124780	0	+	0.52	(0.49,0.526]	chr2	120337	106	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000476615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	5.11613	5.235525	5.35492	1.03252e-5	1.0002e-6	5.57702e-4	7.00342e-5
chr7	116976089	116976189	4523223	0	+	0.48	(0.459,0.49]	chr7	407296	220	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	4.61869	5.2351600000000005	5.85163	1.26997e-7	5.06515e-9	1.06312e-5	5.39084e-7
chr9	127612221	127612312	5498365	0	+	0.813187	(0.629,1]	chr9	491510	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	STXBP1	ENSG00000136854.24	ENST00000637521.2:ENST00000625363.2:ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000627871.2:ENST00000630492.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	5.11195	5.234695	5.35744	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	246436587	246436686	917834	0	-	0.333333	(0.32,0.36]	chr1	100999	193	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	4.95198	5.23398	5.51598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	137986960	137987060	3612838	0	-	0.39	(0.36,0.392]	chr5	327867	1	SS5_PROX	SS5_PROX:INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	4.2635	5.233275	6.20305	4.58367e-7	4.41027e-10	3.4135e-5	5.4191e-8
chr11	62582692	62582792	6615817	0	-	0.3	[0,0.32]	chr11	603598	1	SS3_PROX	SS3_PROX:INTRON	TUT1	ENSG00000149016.16	ENST00000308436.11:ENST00000476907.6:ENST00000278279.7:ENST00000494385.1:ENST00000478537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.45912	5.23324	6.00736	1.18389e-5	2.47801e-8	6.49715e-4	2.36756e-6
chr3	125364910	125365010	2419309	0	-	0.45	(0.424,0.459]	chr3	231886	72	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	5.18388	5.2331199999999995	5.28236	1.21594e-5	3.39052e-11	6.58699e-4	4.85335e-9
chr1	21690797	21690896	539267	0	-	0.383838	(0.36,0.392]	chr1	59290	3	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	5.02429	5.231825	5.43936	3.42448e-6	1.54207e-8	2.10826e-4	1.51982e-6
chr11	122417972	122418072	6766411	0	-	0.39	(0.36,0.392]	chr11	617641	44	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1:ENST00000648576.1	lncRNA	lncRNA	lncRNA	lncRNA	1	18	2	4.38376	5.231529999999999	6.0793	1.64803e-5	2.64141e-9	8.48507e-4	2.93923e-7
chr2	61509138	61509237	1459556	0	-	0.454545	(0.424,0.459]	chr2	151763	65	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	5.19035	5.231425	5.2725	1.67757e-10	1.84447e-11	2.18199e-8	2.73328e-9
chr12	122315850	122315949	7307357	0	-	0.545455	(0.526,0.57]	chr12	674733	56	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000648993.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.19933	5.2296	5.25987	4.16513e-6	2.82947e-6	2.48371e-4	1.75466e-4
chr12	123235816	123235916	7040626	0	+	0.54	(0.526,0.57]	chr12	645748	15	INTRON	INTRON	MTRFR	ENSG00000130921.9	ENST00000425637.3:ENST00000253233.6:ENST00000680325.1:ENST00000538888.6:ENST00000366329.7:ENST00000546132.2:ENST00000536130.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	5.19933	5.2296	5.25987	4.16513e-6	2.82947e-6	2.48371e-4	1.75466e-4
chr14	59449183	59449283	7840847	0	-	0.54	(0.526,0.57]	chr14	722159	197	INTRON	INTRON	GPR135	ENSG00000181619.12	ENST00000481661.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	18	2	5.19933	5.2296	5.25987	4.16513e-6	2.82947e-6	2.48371e-4	1.75466e-4
chr19	11203627	11203706	9287288	0	+	0.544304	(0.526,0.57]	chr19	897578	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000267082	ENSG00000267082.1	ENST00000588634.1	lncRNA	lncRNA	lncRNA	lncRNA	0	18	2	5.19933	5.2296	5.25987	4.16513e-6	2.82947e-6	2.48371e-4	1.75466e-4
chr1	217537487	217537587	858134	0	-	0.37	(0.36,0.392]	chr1	95406	222	INTRON	INTRON	GPATCH2	ENSG00000092978.11	ENST00000366935.8:ENST00000470014.6:ENST00000485274.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	4.7574	5.22907	5.70074	3.77982e-7	2.00235e-10	2.84782e-5	2.59963e-8
chr16	67047864	67047963	8407296	0	+	0.585859	(0.57,0.629]	chr16	786801	12	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	4.37105	5.228490000000001	6.08593	4.54233e-7	4.46939e-11	3.38977e-5	6.29296e-9
chr3	54401164	54401263	1887272	0	+	0.323232	(0.32,0.36]	chr3	192367	140	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000492460.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	4.1806	5.227635	6.27467	2.42526e-10	1.75374e-11	3.09612e-8	2.60542e-9
chr15	63364776	63364876	8208562	0	-	0.53	(0.526,0.57]	chr15	760963	177	INTRON	INTRON	CA12	ENSG00000074410.14	ENST00000178638.8:ENST00000344366.7:ENST00000422263.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.44169	5.22691	6.01213	8.21639e-4	2.82174e-10	0.0238903	3.5327e-8
chr12	104298566	104298665	7002920	0	+	0.565657	(0.526,0.57]	chr12	640186	71	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	4.38014	5.2267600000000005	6.07338	6.74826e-7	1.42281e-10	4.89646e-5	1.85512e-8
chr10	92891051	92891151	5937882	0	+	0.46	(0.459,0.49]	chr10	532649	421	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.8374	5.22628	5.61516	9.49302e-8	7.08953e-9	8.06088e-6	7.39732e-7
chr1	70163219	70163318	649128	0	-	0.454545	(0.424,0.459]	chr1	72004	34	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr10	122853546	122853646	6277890	0	-	0.43	(0.424,0.459]	chr10	561890	26	INTRON	INTRON	FAM24B	ENSG00000213185.7	ENST00000368898.8:ENST00000462859.5:ENST00000368896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr14	52936695	52936794	7832048	0	-	0.444444	(0.424,0.459]	chr14	721392	84	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr22	17524117	17524187	9893175	0	+	0.457143	(0.424,0.459]	chr22	981810	1	CDS	CDS:EXON_MRNA	CECR2	ENSG00000099954.19	ENST00000400585.7:ENST00000262608.13:ENST00000342247.10:ENST00000612582.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr5	159185043	159185143	3652862	0	-	0.43	(0.424,0.459]	chr5	332367	26	INTRON	INTRON	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000611185.4:ENST00000521606.6:ENST00000518802.5:ENST00000520638.1:ENST00000520548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr6	116275446	116275546	3857229	0	+	0.43	(0.424,0.459]	chr6	353091	161	INTRON	INTRON	DSE	ENSG00000111817.19	ENST00000430252.6:ENST00000647244.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	5.18388	5.22572	5.26756	1.21594e-5	8.0232e-6	6.58699e-4	4.54299e-4
chr5	126563285	126563381	3583002	0	-	0.322917	(0.32,0.36]	chr5	325437	10	INTRON	INTRON	ALDH7A1	ENSG00000164904.18	ENST00000637782.1:ENST00000635851.1:ENST00000409134.8:ENST00000636872.1:ENST00000637206.1:ENST00000637272.1:ENST00000636886.1:ENST00000636879.1:ENST00000636808.1:ENST00000636743.1:ENST00000553117.5:ENST00000458249.6:ENST00000637292.1:ENST00000638008.1:ENST00000636286.1:ENST00000636225.1:ENST00000636062.1:ENST00000503281.6:ENST00000637964.1:ENST00000509459.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	4.75201	5.2255	5.69899	3.81705e-7	1.17755e-9	2.90385e-5	1.3764e-7
chr6	33309845	33309944	4041126	0	-	0.484848	(0.459,0.49]	chr6	368221	13	INTRON	INTRON	TAPBP	ENSG00000231925.13	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.76501	5.224495	5.68398	1.46149e-4	5.57196e-8	0.00564049	4.89622e-6
chr22	19478163	19478262	9987905	0	-	0.464646	(0.459,0.49]	chr22	994338	22	INTRON	INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.83271	5.223935	5.61516	1.09213e-4	9.49302e-8	0.00442392	8.06088e-6
chr1	243159511	243159609	905543	0	-	0.27551	[0,0.32]	chr1	100470	27	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000336415.8:ENST00000490813.5:ENST00000413359.6:ENST00000464936.5:ENST00000492145.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.79564	5.223414999999999	5.65119	5.01883e-4	1.20332e-6	0.0161742	8.2089e-5
chr9	71692327	71692426	5625742	0	-	0.474747	(0.459,0.49]	chr9	504329	17	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000377066.9:ENST00000542935.5:ENST00000396272.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	5.1136	5.22289	5.33218	1.78412e-6	9.08458e-11	1.1709e-4	1.22932e-8
chr10	990718	990815	5773930	0	+	0.319588	[0,0.32]	chr10	519935	14	INTRON	INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.8652	5.22288	5.58056	4.11137e-4	1.7046e-6	0.0138446	1.13343e-4
chr11	9307060	9307159	6557097	0	-	0.313131	[0,0.32]	chr11	596244	70	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.8652	5.22288	5.58056	4.11137e-4	1.7046e-6	0.0138446	1.13343e-4
chr11	45975908	45976007	6597524	0	-	0.30303	[0,0.32]	chr11	600231	42	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000525679.1:ENST00000524497.5:ENST00000531959.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.8652	5.22288	5.58056	4.11137e-4	1.7046e-6	0.0138446	1.13343e-4
chr7	14658042	14658142	4638138	0	-	0.31	[0,0.32]	chr7	417394	274	INTRON	INTRON	DGKB	ENSG00000136267.14	ENST00000403951.6:ENST00000402815.6:ENST00000399322.7:ENST00000407950.5:ENST00000406247.7:ENST00000403963.5:ENST00000471732.5:ENST00000477401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.8652	5.22288	5.58056	4.11137e-4	1.7046e-6	0.0138446	1.13343e-4
chr9	132289545	132289644	5754191	0	-	0.292929	[0,0.32]	chr9	516386	5	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6:ENST00000436441.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.8652	5.22288	5.58056	4.11137e-4	1.7046e-6	0.0138446	1.13343e-4
chr20	17956066	17956157	9712623	0	-	0.351648	(0.32,0.36]	chr20	961155	2	INTRON	INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000494401.5:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.42963	5.222495	6.01536	0.00312289	9.59726e-9	0.0697855	9.74486e-7
chr6	71291549	71291643	3815384	0	+	0.468085	(0.459,0.49]	chr6	349348	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OGFRL1	ENSG00000119900.9	ENST00000370435.5:ENST00000650315.1:ENST00000467503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	4.21222	5.222495	6.23277	9.25181e-6	1.44494e-11	5.14007e-4	2.19068e-9
chr7	114435177	114435277	4513848	0	+	0.46	(0.459,0.49]	chr7	406699	81	INTRON	INTRON	FOXP2	ENSG00000128573.27	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000634411.1:ENST00000635109.1:ENST00000634623.1:ENST00000393494.6:ENST00000350908.9:ENST00000408937.7:ENST00000393491.7:ENST00000403559.8:ENST00000462331.5:ENST00000393498.6:ENST00000393495.7:ENST00000459666.5:ENST00000378237.7:ENST00000393489.8:ENST00000635534.1:ENST00000360232.8:ENST00000452963.6:ENST00000390668.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	4.21222	5.222495	6.23277	9.25181e-6	1.44494e-11	5.14007e-4	2.19068e-9
chr10	50374711	50374811	6130230	0	-	0.52	(0.49,0.526]	chr10	549158	300	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	5.04122	5.222345000000001	5.40347	6.36415e-11	1e-12	8.81514e-9	1.72912e-10
chr4	1875532	1875632	2544646	0	+	0.41	(0.392,0.424]	chr4	244532	36	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.61293	5.222175	5.83142	8.49057e-4	3.48252e-8	0.0240064	3.23132e-6
chr3	99962112	99962212	1936404	0	+	0.54	(0.526,0.57]	chr3	195309	1437	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	5.09465	5.221025	5.3474	1.16684e-5	1.05485e-6	6.16746e-4	7.33447e-5
chr5	171208987	171209086	3389745	0	+	0.272727	[0,0.32]	chr5	310994	12	INTRON	INTRON	RANBP17	ENSG00000204764.14	ENST00000389118.8:ENST00000523189.6:ENST00000522533.5:ENST00000522066.5:ENST00000519949.5:ENST00000519256.5:ENST00000521759.5:ENST00000524364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	4.02472	5.220750000000001	6.41678	8.66912e-6	7.3754e-11	4.85864e-4	1.00949e-8
chr15	41628573	41628673	7951836	0	+	0.48	(0.459,0.49]	chr15	734958	66	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	4.7569	5.22044	5.68398	5.57196e-8	1.37759e-8	4.89622e-6	1.37123e-6
chr16	11838413	11838513	8510466	0	-	0.5	(0.49,0.526]	chr16	798630	3	SS3_PROX	SS3_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.71489	5.220079999999999	5.72527	1.81396e-4	1.60521e-8	0.0069054	1.5647e-6
chr2	156480198	156480298	1184843	0	+	0.41	(0.392,0.424]	chr2	124843	36	INTRON	INTRON	GPD2	ENSG00000115159.16	ENST00000415049.5:ENST00000310454.10:ENST00000438166.7:ENST00000495851.5:ENST00000540309.5:ENST00000409861.5:ENST00000409125.8:ENST00000409674.5:ENST00000416888.5:ENST00000430992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.85654	5.21984	5.58314	1.84333e-4	7.33041e-7	0.00688171	5.19799e-5
chr6	42796153	42796252	3779115	0	+	0.424242	(0.392,0.424]	chr6	346009	137	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.85654	5.21984	5.58314	1.84333e-4	7.33041e-7	0.00688171	5.19799e-5
chr1	35308475	35308575	104026	0	+	0.42	(0.392,0.424]	chr1	11730	121	INTRON	INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000441447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.92302	5.219415	5.51581	1.45314e-4	1.07176e-6	0.00569484	7.36955e-5
chr1	121291492	121291592	280973	0	+	0.4	(0.392,0.424]	chr1	28920	61	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.92302	5.219415	5.51581	1.45314e-4	1.07176e-6	0.00569484	7.36955e-5
chr11	73487182	73487282	6644891	0	-	0.42	(0.392,0.424]	chr11	609053	183	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.92302	5.219415	5.51581	1.45314e-4	1.07176e-6	0.00569484	7.36955e-5
chr5	149528514	149528612	3636387	0	-	0.397959	(0.392,0.424]	chr5	330383	30	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.92302	5.219415	5.51581	1.45314e-4	1.07176e-6	0.00569484	7.36955e-5
chr9	9796743	9796843	5564372	0	-	0.4	(0.392,0.424]	chr9	499717	295	INTRON	INTRON	PTPRD	ENSG00000153707.19	ENST00000381196.9:ENST00000463477.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.92302	5.219415	5.51581	1.45314e-4	1.07176e-6	0.00569484	7.36955e-5
chr1	161348914	161349013	316667	0	+	0.323232	(0.32,0.36]	chr1	35806	79	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr10	101494850	101494950	5960529	0	+	0.33	(0.32,0.36]	chr10	534949	150	INTRON	INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000475200.5:ENST00000408038.6:ENST00000370187.8:ENST00000465182.1:ENST00000370183.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr12	10936607	10936707	7085686	0	-	0.36	(0.32,0.36]	chr12	651815	409	INTRON	INTRON	PRH1	ENSG00000231887.8	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr13	49129045	49129145	7379849	0	+	0.36	(0.32,0.36]	chr13	681807	140	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr14	80624109	80624209	7876669	0	-	0.35	(0.32,0.36]	chr14	726264	433	INTRON	INTRON	CEP128	ENSG00000100629.17	ENST00000554502.5:ENST00000281129.7:ENST00000555265.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr14	103037437	103037536	7917771	0	-	0.343434	(0.32,0.36]	chr14	730109	249	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr17	62967149	62967249	8769961	0	+	0.36	(0.32,0.36]	chr17	834632	4	SS5_PROX	SS5_PROX:INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr5	123405737	123405837	3579971	0	-	0.35	(0.32,0.36]	chr5	325231	16	INTRON	INTRON	CEP120	ENSG00000168944.17	ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1:ENST00000503049.2:ENST00000675409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr7	92364749	92364848	4471799	0	+	0.343434	(0.32,0.36]	chr7	401596	21	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr9	27063435	27063535	5365364	0	+	0.35	(0.32,0.36]	chr9	478870	8	UTR3	UTR3:EXON_MRNA	IFT74	ENSG00000096872.17	ENST00000380062.10	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03749	5.2166250000000005	5.39576	9.65678e-5	9.86331e-6	0.00399919	5.39872e-4
chr10	34587216	34587316	6110791	0	-	0.49	(0.459,0.49]	chr10	547481	697	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.51255	5.2166049999999995	5.92066	6.3564e-4	2.70029e-9	0.0193151	2.98805e-7
chr1	65425971	65426065	184286	0	+	0.425532	(0.424,0.459]	chr1	20354	2	INTRON	INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.48802	5.216435	5.94485	0.00121831	3.84993e-9	0.0326347	4.17496e-7
chr1	116025999	116026097	268613	0	+	0.346939	(0.32,0.36]	chr1	27615	48	INTRON	INTRON	SLC22A15	ENSG00000163393.13	ENST00000369503.9:ENST00000369502.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.13957	5.216375	5.29318	6.71414e-5	1.5251e-5	0.00291649	8.01855e-4
chr3	168063144	168063243	2483180	0	-	0.353535	(0.32,0.36]	chr3	238238	144	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.13957	5.216375	5.29318	6.71414e-5	1.5251e-5	0.00291649	8.01855e-4
chr5	78078358	78078458	3509322	0	-	0.34	(0.32,0.36]	chr5	321287	340	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	5.13957	5.216375	5.29318	6.71414e-5	1.5251e-5	0.00291649	8.01855e-4
chr7	81968311	81968386	4757604	0	-	0.346667	(0.32,0.36]	chr7	426321	3	INTRON	INTRON	CACNA2D1	ENSG00000153956.16	ENST00000356860.8:ENST00000356253.9:ENST00000486539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	5.13957	5.216375	5.29318	6.71414e-5	1.5251e-5	0.00291649	8.01855e-4
chr7	111135726	111135826	4815059	0	-	0.34	(0.32,0.36]	chr7	431926	1718	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	5.13957	5.216375	5.29318	6.71414e-5	1.5251e-5	0.00291649	8.01855e-4
chr15	64227912	64228012	8212635	0	-	0.4	(0.392,0.424]	chr15	761637	108	INTRON	INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	4.53319	5.216115	5.89904	1.61757e-6	2.16736e-8	1.08646e-4	2.09062e-6
chr1	193122806	193122906	387129	0	+	0.41	(0.392,0.424]	chr1	41633	2	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	4.68238	5.21605	5.74972	3.20208e-7	1.25981e-7	2.47387e-5	1.05791e-5
chr3	136690438	136690538	2448118	0	-	0.59	(0.57,0.629]	chr3	234921	591	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.17892	5.212815	5.24671	3.48382e-6	2.15311e-6	2.13641e-4	1.3963e-4
chr7	74569853	74569953	4430361	0	+	0.62	(0.57,0.629]	chr7	398189	98	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000470715.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	4.94935	5.212775000000001	5.4762	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	12774390	12774490	5795747	0	+	0.6	(0.57,0.629]	chr10	521747	42	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	4.0068	5.21267	6.41854	7.44494e-8	1e-12	6.46264e-6	1.73382e-10
chr8	123273149	123273249	5266207	0	-	0.43	(0.424,0.459]	chr8	470432	54	INTRON	INTRON	ZHX1	ENSG00000165156.15	ENST00000297857.3:ENST00000395571.8:ENST00000522655.5:ENST00000522595.5:ENST00000524267.5:ENST00000480132.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	4.65351	5.21218	5.77085	1.8873e-7	5.32819e-8	1.54537e-5	4.72329e-6
chr11	4066745	4066844	6305254	0	+	0.454545	(0.424,0.459]	chr11	565383	70	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532919.5:ENST00000526771.5:ENST00000527484.5:ENST00000533445.1:ENST00000533977.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.96809	5.2118	5.45551	6.10851e-5	1.50668e-6	0.0027377	9.96778e-5
chr17	19963322	19963422	8893963	0	-	0.44	(0.424,0.459]	chr17	851703	3	SS3_PROX	SS3_PROX:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.96809	5.2118	5.45551	6.10851e-5	1.50668e-6	0.0027377	9.96778e-5
chr17	37459684	37459784	8707197	0	+	0.45	(0.424,0.459]	chr17	825051	7	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.96809	5.2118	5.45551	6.10851e-5	1.50668e-6	0.0027377	9.96778e-5
chr1	21132903	21133003	537325	0	-	0.43	(0.424,0.459]	chr1	59083	199	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	5.05139	5.21147	5.37155	4.27641e-5	2.42251e-6	0.00199812	1.53938e-4
chr2	23776589	23776688	1394416	0	-	0.454545	(0.424,0.459]	chr2	144489	106	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	5.05139	5.21147	5.37155	4.27641e-5	2.42251e-6	0.00199812	1.53938e-4
chr12	1095262	1095362	6789327	0	+	0.51	(0.49,0.526]	chr12	620121	113	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000539007.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.85538	5.2097750000000005	5.56417	6.26806e-5	1.40942e-7	0.00277665	1.1686e-5
chr17	41885911	41886011	8930101	0	-	0.51	(0.49,0.526]	chr17	857437	4	SS5_PROX	SS5_PROX:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.92941	5.209315	5.48922	4.32628e-5	2.5213e-7	0.00200309	2.01203e-5
chr3	12655161	12655260	2176374	0	-	0.515152	(0.49,0.526]	chr3	212635	57	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.92941	5.209315	5.48922	4.32628e-5	2.5213e-7	0.00200309	2.01203e-5
chr5	132828504	132828603	3599348	0	-	0.515152	(0.49,0.526]	chr5	326923	5	INTRON	INTRON	SHROOM1	ENSG00000164403.15	ENST00000378679.8:ENST00000440118.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.92941	5.209315	5.48922	4.32628e-5	2.5213e-7	0.00200309	2.01203e-5
chr6	30908403	30908503	3753343	0	+	0.6	(0.57,0.629]	chr6	341005	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GTF2H4	ENSG00000213780.11	ENST00000259895.9:ENST00000376316.5:ENST00000453897.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	102	2	5.05426	5.20815	5.36204	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	38381089	38381189	5159505	0	-	0.49	(0.459,0.49]	chr8	462093	1	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.3608	5.207775	6.05475	2.23014e-6	2.70956e-10	1.43671e-4	3.40943e-8
chr21	45529682	45529780	9887625	0	-	0.510204	(0.49,0.526]	chr21	981053	34	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	4.89039	5.2064900000000005	5.52259	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	123341588	123341687	7313456	0	-	0.575758	(0.57,0.629]	chr12	675644	1	INTRON	INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	5.09893	5.205865	5.3128	7.91825e-6	9.9438e-7	4.54299e-4	7.00342e-5
chr2	235716264	235716363	1348379	0	+	0.585859	(0.57,0.629]	chr2	139213	67	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	5.09893	5.205865	5.3128	7.91825e-6	9.9438e-7	4.54299e-4	7.00342e-5
chr1	45683378	45683478	600527	0	-	0.54	(0.526,0.57]	chr1	67389	218	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000488278.5:ENST00000480941.1:ENST00000480083.5:ENST00000493083.5:ENST00000460859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.69362	5.20567	5.71772	1.98837e-4	1.72001e-8	0.00746609	1.66972e-6
chr12	812741	812841	6787238	0	+	0.24	[0,0.32]	chr12	619901	581	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	5.10715	5.20456	5.30197	7.53496e-5	8.33093e-10	0.00322158	9.89956e-8
chr8	108243958	108244057	5246221	0	-	0.40404	(0.392,0.424]	chr8	469256	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	4.89327	5.20454	5.51581	1.07176e-6	3.77123e-8	7.36955e-5	3.4456e-6
chrX	24957830	24957930	10108616	0	+	0.52	(0.49,0.526]	chrX	1007785	269	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	4.60733	5.203905000000001	5.80048	4.64685e-8	8.0778e-9	4.23007e-6	8.33659e-7
chr6	161225043	161225143	4249628	0	-	0.52	(0.49,0.526]	chr6	386532	583	INTRON	INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	4.97257	5.2026	5.43263	3.72383e-10	1e-12	4.65717e-8	1.73382e-10
chr10	282012	282107	6032168	0	-	0.484211	(0.459,0.49]	chr10	541484	3	INTRON	INTRON	DIP2C	ENSG00000151240.17	ENST00000381496.7:ENST00000280886.12:ENST00000634311.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	4.0895	5.20183	6.31416	1.7943e-7	3.08209e-12	1.45035e-5	5.03634e-10
chr7	111545969	111546068	4819171	0	-	0.252525	[0,0.32]	chr7	431966	130	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.46657	5.2014949999999995	5.93642	0.00288167	3.87502e-8	0.0662445	3.55241e-6
chr8	54005176	54005275	5170737	0	-	0.252525	[0,0.32]	chr8	463622	17	INTRON	INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000520534.5:ENST00000518310.5:ENST00000517351.5:ENST00000521836.1:ENST00000518784.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.46657	5.2014949999999995	5.93642	0.00288167	3.87502e-8	0.0662445	3.55241e-6
chr20	36165477	36165577	9639925	0	+	0.49	(0.459,0.49]	chr20	951894	102	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5:ENST00000427533.2:ENST00000338074.7:ENST00000636016.2:ENST00000373945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.16672	5.200875	5.23503	7.74288e-6	5.25256e-6	4.39068e-4	3.11102e-4
chrX	17609694	17609794	10093401	0	+	0.46	(0.459,0.49]	chrX	1006577	2330	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	5.16672	5.200875	5.23503	7.74288e-6	5.25256e-6	4.39068e-4	3.11102e-4
chr2	87059884	87059984	1506690	0	-	0.42	(0.392,0.424]	chr2	156239	37	INTRON	INTRON	ENSG00000266931	ENSG00000266931.2	ENST00000592457.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	19	2	4.36677	5.200555	6.03434	8.10105e-6	3.73254e-9	4.57465e-4	4.03186e-7
chr7	16653760	16653859	4311505	0	+	0.40404	(0.392,0.424]	chr7	390568	71	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	4.81758	5.20036	5.58314	7.33041e-7	6.29448e-8	5.19799e-5	5.585e-6
chr14	71628728	71628828	7688618	0	+	0.48	(0.459,0.49]	chr14	706625	41	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5:ENST00000555066.1	protein_coding	protein_coding	protein_coding	protein_coding	24	270	2	5.06711	5.19711	5.32711	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	127724199	127724299	4535011	0	+	0.38	(0.36,0.392]	chr7	407861	24	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	4.31565	5.196725	6.0778	1.47786e-7	1e-12	1.22253e-5	1.72912e-10
chr15	35339756	35339856	8129752	0	-	0.35	(0.32,0.36]	chr15	752245	83	INTRON	INTRON	DPH6	ENSG00000134146.12	ENST00000560386.5:ENST00000558973.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	30	2	5.01784	5.196095	5.37435	1.8226e-10	3.22675e-12	2.36584e-8	5.24685e-10
chr12	104338442	104338540	7003338	0	+	0.561224	(0.526,0.57]	chr12	640267	38	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.84794	5.1952300000000005	5.54252	6.50622e-5	1.66713e-7	0.00284455	1.36401e-5
chr6	41894639	41894731	4060599	0	-	0.543478	(0.526,0.57]	chr6	370127	3	INTRON	INTRON	USP49	ENSG00000164663.15	ENST00000682992.1:ENST00000373006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.84794	5.1952300000000005	5.54252	6.50622e-5	1.66713e-7	0.00284455	1.36401e-5
chrX	2369871	2369971	10252345	0	-	0.57	(0.526,0.57]	chrX	1021537	315	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.84794	5.1952300000000005	5.54252	6.50622e-5	1.66713e-7	0.00284455	1.36401e-5
chr6	34599773	34599873	4043724	0	-	0.42	(0.392,0.424]	chr6	368555	88	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	5.05503	5.194940000000001	5.33485	2.39312e-9	4.44158e-11	2.68297e-7	6.22225e-9
chr1	43669499	43669599	128144	0	+	0.54	(0.526,0.57]	chr1	15535	2	SS5_PROX	SS5_PROX:INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	4.61327	5.194895	5.77652	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	49980565	49980665	1868301	0	+	0.53	(0.526,0.57]	chr3	189775	48	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.90802	5.19485	5.48168	4.81512e-5	2.6732e-7	0.00220626	2.09843e-5
chr3	129751618	129751718	2434231	0	-	0.57	(0.526,0.57]	chr3	233455	630	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.90802	5.19485	5.48168	4.81512e-5	2.6732e-7	0.00220626	2.09843e-5
chr6	42794758	42794857	3779101	0	+	0.454545	(0.424,0.459]	chr6	346009	123	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	4.35909	5.194285000000001	6.02948	1.2237e-8	1.8912e-9	1.23286e-6	2.1436e-7
chr3	170161856	170161955	2490468	0	-	0.393939	(0.392,0.424]	chr3	238537	108	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	4.70577	5.194	5.68223	1.931e-7	3.16586e-10	1.56398e-5	3.98256e-8
chr16	48591284	48591383	8553446	0	-	0.454545	(0.424,0.459]	chr16	805240	285	INTRON	INTRON	N4BP1	ENSG00000102921.8	ENST00000262384.4:ENST00000564124.5:ENST00000564710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	4.3289	5.193715	6.05853	7.70458e-10	1e-12	9.22745e-8	1.72912e-10
chr1	170541428	170541525	337915	0	+	0.494845	(0.49,0.526]	chr1	37701	2	EXON_MRNA	EXON_MRNA:INTRON	GORAB	ENSG00000120370.14	ENST00000685976.1:ENST00000686870.1:ENST00000685515.1:ENST00000688499.1:ENST00000688688.1:ENST00000687880.1:ENST00000692875.1:ENST00000367762.2:ENST00000692234.1:ENST00000691235.1:ENST00000690898.1:ENST00000689173.1:ENST00000498166.6:ENST00000367763.8:ENST00000687370.1:ENST00000693173.1:ENST00000690124.1:ENST00000693373.1:ENST00000692855.1:ENST00000691199.1:ENST00000498600.2:ENST00000684929.1:ENST00000691051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	4.04836	5.192774999999999	6.33719	1.40005e-7	1e-12	1.16776e-5	1.73382e-10
chr1	23152971	23153071	542492	0	-	0.28	[0,0.32]	chr1	59927	194	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	5.04231	5.19027	5.33823	3.40623e-8	2.44269e-10	3.14246e-6	3.11038e-8
chr1	171978701	171978800	343151	0	+	0.474747	(0.459,0.49]	chr1	38272	81	INTRON	INTRON	DNM3	ENSG00000197959.15	ENST00000688173.1:ENST00000485254.3:ENST00000627582.3:ENST00000367733.6:ENST00000367731.5:ENST00000355305.9:ENST00000520906.5:ENST00000523513.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.97981	5.19025	5.40069	3.36273e-5	1.15324e-6	0.00159406	7.95154e-5
chr14	67758811	67758909	7856872	0	-	0.489796	(0.459,0.49]	chr14	723404	23	INTRON	INTRON	ZFYVE26	ENSG00000072121.17	ENST00000394455.6:ENST00000347230.9:ENST00000678386.1:ENST00000676620.1:ENST00000676512.1:ENST00000554557.5:ENST00000554523.5:ENST00000557306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.97981	5.19025	5.40069	3.36273e-5	1.15324e-6	0.00159406	7.95154e-5
chr17	5381753	5381853	8854186	0	-	0.48	(0.459,0.49]	chr17	846369	103	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573169.1:ENST00000576708.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	16	2	4.97981	5.19025	5.40069	3.36273e-5	1.15324e-6	0.00159406	7.95154e-5
chr19	46977891	46977991	9367495	0	+	0.49	(0.459,0.49]	chr19	911665	401	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.97981	5.19025	5.40069	3.36273e-5	1.15324e-6	0.00159406	7.95154e-5
chr15	79894804	79894903	8256576	0	-	0.454545	(0.424,0.459]	chr15	766399	51	INTRON	INTRON	MTHFS	ENSG00000136371.11	ENST00000258874.4:ENST00000559722.2:ENST00000560919.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	4.29572	5.19022	6.08472	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	4788105	4788205	3692258	0	+	0.47	(0.459,0.49]	chr6	336532	109	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	5.04785	5.190015000000001	5.33218	2.39418e-5	1.78412e-6	0.00119556	1.1709e-4
chr16	27637303	27637403	8361057	0	+	0.57	(0.526,0.57]	chr16	779577	43	INTRON	INTRON	KATNIP	ENSG00000047578.14	ENST00000261588.10:ENST00000568258.5:ENST00000565672.5:ENST00000564749.5:ENST00000567894.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	4.49333	5.188560000000001	5.88379	1.8403e-7	2.39626e-9	1.51229e-5	2.67554e-7
chr20	35906848	35906948	9638724	0	+	0.55	(0.526,0.57]	chr20	951784	68	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	4.49333	5.188560000000001	5.88379	1.8403e-7	2.39626e-9	1.51229e-5	2.67554e-7
chr7	7187703	7187803	4303402	0	+	0.45	(0.424,0.459]	chr7	390130	45	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	5.09414	5.18825	5.28236	4.02077e-10	3.39052e-11	4.98364e-8	4.85335e-9
chr7	8005255	8005355	4308117	0	+	0.27	[0,0.32]	chr7	390317	8	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000492797.5:ENST00000470583.5:ENST00000474269.5:ENST00000489405.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	4.96462	5.187749999999999	5.41088	5.55329e-8	1e-12	5.01996e-6	1.72912e-10
chr3	141511562	141511662	2033434	0	+	0.46	(0.459,0.49]	chr3	203150	240	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000515549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	5.09231	5.18735	5.28239	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	38674129	38674229	9344836	0	+	0.53	(0.526,0.57]	chr19	907170	255	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	4.78896	5.18722	5.5854799999999996	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	31704795	31704895	6363347	0	+	0.53	(0.526,0.57]	chr11	569952	167	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	4.76892	5.186719999999999	5.60452	6.77869e-8	7.20291e-9	5.95616e-6	7.48166e-7
chrX	24199936	24200036	10104888	0	+	0.48	(0.459,0.49]	chrX	1007471	198	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	4.22689	5.186695	6.1465	6.25785e-11	1e-12	8.69617e-9	1.72912e-10
chr6	34599873	34599972	4043725	0	-	0.40404	(0.392,0.424]	chr6	368555	89	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	5.03825	5.18655	5.33485	4.44158e-11	1e-12	6.22225e-9	1.73382e-10
chr14	70377870	70377970	7860491	0	-	0.37	(0.36,0.392]	chr14	723926	17	INTRON	INTRON	COX16:SYNJ2BP	ENSG00000133983.16:ENSG00000213463.5	ENST00000555276.5:ENST00000256366.6:ENST00000554216.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	4.9332	5.18628	5.43936	3.42448e-6	1.6984e-11	2.10826e-4	2.5267e-9
chr22	23882067	23882165	9905778	0	+	0.479592	(0.459,0.49]	chr22	983844	18	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	4.65177	5.186	5.72023	5.56898e-8	1e-12	5.02653e-6	1.72912e-10
chr3	129397340	129397440	2432485	0	-	0.52	(0.49,0.526]	chr3	233205	2	SS3_PROX	SS3_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	60	2	4.49486	5.185309999999999	5.87576	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	93356236	93356320	6207433	0	-	0.369048	(0.36,0.392]	chr10	555062	1	SS5_PROX	SS5_PROX:INTRON	MYOF	ENSG00000138119.17	ENST00000359263.9:ENST00000463743.5:ENST00000358334.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	4.74255	5.1852	5.62785	5.69775e-7	5.25886e-10	4.16055e-5	6.43194e-8
chr11	75328127	75328226	6652948	0	-	0.383838	(0.36,0.392]	chr11	610002	161	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	4.16662	5.184835	6.20305	9.16296e-5	4.41027e-10	0.00387303	5.4191e-8
chr2	224527705	224527804	1705635	0	-	0.383838	(0.36,0.392]	chr2	175483	126	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000541548.5:ENST00000432260.2:ENST00000436172.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.16662	5.184835	6.20305	9.16296e-5	4.41027e-10	0.00387303	5.4191e-8
chr10	12071584	12071684	5789967	0	+	0.52	(0.49,0.526]	chr10	521450	20	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000437298.1	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	4.82576	5.184184999999999	5.54261	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	94778679	94778777	5024942	0	+	0.336735	(0.32,0.36]	chr8	451154	5	INTRON	INTRON	DPY19L4	ENSG00000156162.16	ENST00000414645.6:ENST00000522669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	4.85778	5.184044999999999	5.51031	2.41138e-6	1.99542e-10	1.53938e-4	2.57666e-8
chr7	157239498	157239597	4598761	0	+	0.444444	(0.424,0.459]	chr7	414074	78	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	94	2	4.64498	5.183825000000001	5.72267	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	155132230	155132326	306014	0	+	0.375	(0.36,0.392]	chr1	33310	2	INTRON	INTRON	EFNA1	ENSG00000169242.12	ENST00000368407.8:ENST00000368406.2:ENST00000469878.5:ENST00000474413.5:ENST00000497282.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	4.73928	5.183565	5.62785	5.69775e-7	5.12952e-7	4.16055e-5	3.78931e-5
chr15	77374521	77374621	8251040	0	-	0.34	(0.32,0.36]	chr15	765880	89	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	4.39699	5.183125	5.96926	8.67854e-8	3.15048e-8	7.51259e-6	2.93512e-6
chr3	3135585	3135683	1750271	0	+	0.428571	(0.424,0.459]	chr3	179298	40	INTRON	INTRON	TRNT1	ENSG00000072756.17	ENST00000651591.1:ENST00000251607.11:ENST00000651316.1:ENST00000280591.10:ENST00000650755.1:ENST00000650989.1:ENST00000651093.1:ENST00000651352.1:ENST00000434583.5:ENST00000397779.3:ENST00000413000.1:ENST00000650839.1:ENST00000482311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	45	2	4.7894	5.181794999999999	5.57419	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	5070152	5070252	5325589	0	+	0.23	[0,0.32]	chr9	476661	1	SS5_PROX	SS5_PROX:INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	4.14806	5.18164	6.21522	1.26155e-12	1e-12	2.15473e-10	1.73382e-10
chr1	19464412	19464512	530981	0	-	0.53	(0.526,0.57]	chr1	58349	147	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.44169	5.181100000000001	5.92051	8.21639e-4	1.10942e-9	0.0238903	1.30307e-7
chr7	131098471	131098571	4849109	0	-	0.32	[0,0.32]	chr7	434503	101	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	24	2	4.64799	5.180385	5.71278	2.00168e-6	1e-12	1.30649e-4	1.72912e-10
chr3	185933238	185933337	2512881	0	-	0.333333	(0.32,0.36]	chr3	240629	10	INTRON	INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	5.09957	5.17989	5.26021	1.14222e-9	1e-12	1.33948e-7	1.73382e-10
chr16	30862714	30862814	8546512	0	-	0.39	(0.36,0.392]	chr16	804552	100	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.65673	5.178735	5.70074	7.48315e-4	3.77982e-7	0.0220209	2.84782e-5
chr16	70240806	70240906	8579959	0	-	0.46	(0.459,0.49]	chr16	809206	4	SS5_PROX	SS5_PROX:INTRON	SMG1P7	ENSG00000261556.10	ENST00000565246.7:ENST00000568855.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	24	2	4.61869	5.178465	5.73824	1.26997e-7	2.1921e-8	1.06312e-5	2.0899e-6
chr17	2605060	2605160	8628509	0	+	0.37	(0.36,0.392]	chr17	814605	103	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.72821	5.17803	5.62785	6.09158e-4	5.69775e-7	0.0188826	4.16055e-5
chr18	222939	223039	9162856	0	-	0.39	(0.36,0.392]	chr18	882946	1	SS5_PROX	SS5_PROX:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000584470.5:ENST00000579891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.72821	5.17803	5.62785	6.09158e-4	5.69775e-7	0.0188826	4.16055e-5
chr2	232041961	232042060	1335572	0	+	0.363636	(0.36,0.392]	chr2	138160	115	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12:ENST00000433430.5:ENST00000464554.5:ENST00000470087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.72821	5.17803	5.62785	6.09158e-4	5.69775e-7	0.0188826	4.16055e-5
chr7	66136668	66136767	4398642	0	+	0.373737	(0.36,0.392]	chr7	396437	19	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.72821	5.17803	5.62785	6.09158e-4	5.69775e-7	0.0188826	4.16055e-5
chr1	44255556	44255655	591681	0	-	0.393939	(0.392,0.424]	chr1	66576	72	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000462341.1:ENST00000452396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	4.68238	5.1774249999999995	5.67247	3.20208e-7	1e-12	2.47387e-5	1.72912e-10
chr5	140121730	140121830	3335300	0	+	0.35	(0.32,0.36]	chr5	306197	67	UTR3	UTR3:EXON_MRNA	PURA	ENSG00000185129.8	ENST00000331327.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.73736	5.175305	5.61325	1.45077e-6	5.18532e-7	9.68953e-5	3.83329e-5
chr17	30259526	30259625	8906385	0	-	0.393939	(0.392,0.424]	chr17	853515	94	INTRON	INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	3.87207	5.173995	6.47592	2.99056e-7	3.31901e-12	2.3237e-5	5.37234e-10
chr10	5871734	5871834	6040125	0	-	0.6	(0.57,0.629]	chr10	542249	87	INTRON	INTRON	ANKRD16	ENSG00000134461.16	ENST00000380094.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	4.90922	5.172265	5.43531	2.83977e-7	2.65774e-10	2.21461e-5	3.37369e-8
chr19	11089715	11089815	9286813	0	+	0.7	(0.629,1]	chr19	897471	1	SS5_PROX	SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.08658	5.1710449999999994	5.25551	5.52146e-6	1.19594e-6	3.23814e-4	8.2089e-5
chr16	57644700	57644796	8400993	0	+	0.5625	(0.526,0.57]	chr16	785663	11	INTRON	INTRON	ADGRG1	ENSG00000205336.14	ENST00000565587.5:ENST00000568791.5:ENST00000570044.5:ENST00000567553.5:ENST00000565314.5:ENST00000564912.5:ENST00000562673.5:ENST00000564907.5:ENST00000568908.5:ENST00000568909.5:ENST00000566778.5:ENST00000561988.5:ENST00000561872.5:ENST00000562101.5:ENST00000567835.5:ENST00000563548.5:ENST00000569372.5:ENST00000562003.5:ENST00000561833.5:ENST00000569531.5:ENST00000561696.5:ENST00000565013.5:ENST00000562414.5:ENST00000561969.5:ENST00000563445.5:ENST00000562608.5:ENST00000565338.5:ENST00000567702.5:ENST00000456916.5:ENST00000567154.5:ENST00000388813.9:ENST00000563007.5:ENST00000562558.6:ENST00000566271.6:ENST00000568645.5:ENST00000563374.5:ENST00000673126.2:ENST00000562631.7:ENST00000568234.5:ENST00000566164.5:ENST00000565770.5:ENST00000672974.1:ENST00000568979.5:ENST00000567397.5:ENST00000569992.5:ENST00000566123.5:ENST00000562682.5:ENST00000561782.5:ENST00000564783.5:ENST00000564729.5:ENST00000565976.6:ENST00000566888.5:ENST00000565539.5:ENST00000566508.5:ENST00000567915.5:ENST00000569132.5:ENST00000564103.5:ENST00000562467.5:ENST00000568700.1:ENST00000540164.6:ENST00000568531.5:ENST00000564360.5:ENST00000568074.5:ENST00000563414.5:ENST00000568618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	4.32974	5.170935	6.01213	1.55497e-6	2.82174e-10	1.02493e-4	3.5327e-8
chr10	79790718	79790817	6181714	0	-	0.323232	(0.32,0.36]	chr10	553562	44	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1:ENST00000477192.6:ENST00000665716.1:ENST00000483080.6:ENST00000661316.1:ENST00000488805.5	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr11	47520853	47520952	6604783	0	-	0.333333	(0.32,0.36]	chr11	601342	136	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr21	16490352	16490450	9789803	0	+	0.336735	(0.32,0.36]	chr21	970641	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000400178.7:ENST00000456342.6:ENST00000670446.1:ENST00000666636.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000660213.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000664485.1:ENST00000663933.1:ENST00000670290.1:ENST00000668830.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr3	66001717	66001816	2326139	0	-	0.333333	(0.32,0.36]	chr3	225654	942	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr3	160819936	160820036	2070072	0	+	0.35	(0.32,0.36]	chr3	205522	629	INTRON	INTRON	PPM1L	ENSG00000163590.14	ENST00000497343.5:ENST00000498165.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr7	111007955	111008055	4813781	0	-	0.35	(0.32,0.36]	chr7	431926	440	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr7	127390009	127390108	4840156	0	-	0.323232	(0.32,0.36]	chr7	433443	35	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000434602.5:ENST00000436992.5:ENST00000439506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.7265	5.169874999999999	5.61325	6.12159e-4	1.45077e-6	0.0189985	9.68953e-5
chr17	12068857	12068957	8652369	0	+	0.36	(0.32,0.36]	chr17	818330	135	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.82783	5.16907	5.51031	4.57616e-4	2.41138e-6	0.0150584	1.53938e-4
chr3	149064590	149064690	2469020	0	-	0.34	(0.32,0.36]	chr3	236838	4	SS5_PROX	SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.82783	5.16907	5.51031	4.57616e-4	2.41138e-6	0.0150584	1.53938e-4
chr7	111400108	111400208	4817707	0	-	0.35	(0.32,0.36]	chr7	431941	73	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.82783	5.16907	5.51031	4.57616e-4	2.41138e-6	0.0150584	1.53938e-4
chr9	33113065	33113162	5604841	0	-	0.340206	(0.32,0.36]	chr9	501724	26	UTR3	UTR3:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.82783	5.16907	5.51031	4.57616e-4	2.41138e-6	0.0150584	1.53938e-4
chr16	46916152	46916247	8375741	0	+	0.515789	(0.49,0.526]	chr16	782810	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000440783.2:ENST00000562801.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	4.0726	5.168365	6.26413	1.93553e-5	4.10783e-12	9.87839e-4	6.60034e-10
chr5	116240036	116240136	3287232	0	+	0.4	(0.392,0.424]	chr5	302259	1055	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	4.17862	5.168329999999999	6.15804	4.01331e-5	6.43194e-10	0.00187621	7.74888e-8
chr2	8794586	8794685	1374576	0	-	0.434343	(0.424,0.459]	chr2	142278	2	INTRON	INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000459813.2:ENST00000692419.1:ENST00000689531.1:ENST00000686179.1:ENST00000692889.1:ENST00000687240.1:ENST00000690607.1:ENST00000319688.5:ENST00000689114.1:ENST00000685274.1:ENST00000693366.1:ENST00000691349.1:ENST00000693249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.79703	5.167315	5.5376	2.28148e-4	4.83052e-7	0.00827964	3.58077e-5
chr2	213310277	213310377	1297454	0	+	0.45	(0.424,0.459]	chr2	134338	1	SS5_PROX	SS5_PROX:INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000432529.6:ENST00000413312.5:ENST00000440779.5:ENST00000452556.5:ENST00000331683.10:ENST00000447990.1:ENST00000414961.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.79703	5.167315	5.5376	2.28148e-4	4.83052e-7	0.00827964	3.58077e-5
chr22	31747994	31748094	10016806	0	-	0.43	(0.424,0.459]	chr22	998251	87	INTRON	INTRON	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000461722.1:ENST00000412743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.79703	5.167315	5.5376	2.28148e-4	4.83052e-7	0.00827964	3.58077e-5
chr5	140111147	140111245	3335191	0	+	0.428571	(0.424,0.459]	chr5	306186	19	INTRON	INTRON	PURA	ENSG00000185129.8	ENST00000505703.2:ENST00000651386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.79703	5.167315	5.5376	2.28148e-4	4.83052e-7	0.00827964	3.58077e-5
chr6	87478937	87479037	3831202	0	+	0.44	(0.424,0.459]	chr6	351055	10	INTRON	INTRON	SLC35A1	ENSG00000164414.19	ENST00000464978.5:ENST00000369556.7:ENST00000369557.9:ENST00000369552.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.79703	5.167315	5.5376	2.28148e-4	4.83052e-7	0.00827964	3.58077e-5
chr9	128327867	128327965	5501359	0	+	0.438776	(0.424,0.459]	chr9	492179	16	INTRON	INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	4.77408	5.165725	5.55737	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	16450139	16450238	8661155	0	+	0.555556	(0.526,0.57]	chr17	819035	82	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	4.78774	5.1651299999999996	5.54252	1.66713e-7	3.64708e-9	1.36401e-5	3.98105e-7
chr17	51218172	51218258	8966177	0	-	0.360465	(0.36,0.392]	chr17	863032	4	INTRON	INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	4.7574	5.1647	5.572	2.00235e-10	1e-12	2.59963e-8	1.72912e-10
chr10	14534488	14534587	6061526	0	-	0.494949	(0.49,0.526]	chr10	543658	19	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000378470.5:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000481209.5:ENST00000492700.5:ENST00000496330.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000494865.5:ENST00000475786.5:ENST00000488576.5:ENST00000474143.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.64127	5.1642150000000004	5.68716	2.4929e-4	3.37299e-8	0.0089494	3.12343e-6
chr2	201446350	201446450	1670538	0	-	0.52	(0.49,0.526]	chr2	171679	129	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1:ENST00000451703.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.64127	5.1642150000000004	5.68716	2.4929e-4	3.37299e-8	0.0089494	3.12343e-6
chr10	59841252	59841352	6136199	0	-	0.37	(0.36,0.392]	chr10	549469	82	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.88881	5.164085	5.43936	3.42448e-6	8.92448e-8	2.10826e-4	7.65609e-6
chr13	99524599	99524698	7430731	0	+	0.484848	(0.459,0.49]	chr13	684478	41	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	4.11103	5.16339	6.21575	8.64387e-8	2.91337e-11	7.5e-6	4.19646e-9
chr1	1000072	1000172	491061	0	-	0.71	(0.629,1]	chr1	51984	2	UTR5	UTR5:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	5.02135	5.162125	5.3029	9.70346e-6	7.37915e-7	5.37523e-4	5.32314e-5
chr13	113512387	113512487	7454184	0	+	0.56	(0.526,0.57]	chr13	686610	4	SS5_PROX	SS5_PROX:INTRON	TMCO3:ENSG00000276916	ENSG00000150403.18:ENSG00000276916.1	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5:ENST00000619338.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	51	2	4.82694	5.16183	5.49672	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	1592065	1592147	9402920	0	-	0.707317	(0.629,1]	chr19	918975	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBD3	ENSG00000071655.18	ENST00000434436.8:ENST00000156825.5:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.5897	5.161759999999999	5.73382	4.8496e-9	4.09337e-9	5.20289e-7	4.41126e-7
chrX	40935765	40935864	10326162	0	-	0.707071	(0.629,1]	chrX	1025356	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P55	ENSG00000216866.5	ENST00000397318.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	4.4478	5.161715	5.87563	3.00864e-8	6.51376e-10	2.83167e-6	7.88358e-8
chr11	10758213	10758310	6318206	0	+	0.515464	(0.49,0.526]	chr11	567161	10	INTRON	INTRON	CTR9	ENSG00000198730.9	ENST00000361367.7:ENST00000524523.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.04178	5.1616	5.28142	1.57703e-5	2.46593e-6	8.20905e-4	1.54892e-4
chr16	70410372	70410472	8581169	0	-	0.52	(0.49,0.526]	chr16	809423	89	INTRON	INTRON	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000566097.1:ENST00000561708.1:ENST00000567586.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.04178	5.1616	5.28142	1.57703e-5	2.46593e-6	8.20905e-4	1.54892e-4
chr19	34507032	34507131	9329117	0	+	0.494949	(0.49,0.526]	chr19	904507	69	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.04178	5.1616	5.28142	1.57703e-5	2.46593e-6	8.20905e-4	1.54892e-4
chrX	40669306	40669404	10325452	0	-	0.520408	(0.49,0.526]	chrX	1025222	21	INTRON	INTRON	MED14	ENSG00000180182.11	ENST00000324817.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.04178	5.1616	5.28142	1.57703e-5	2.46593e-6	8.20905e-4	1.54892e-4
chr10	67899900	67900000	5871041	0	+	0.52	(0.49,0.526]	chr10	526693	80	INTRON	INTRON	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000473922.1:ENST00000406900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	5.11613	5.16148	5.20683	1.03252e-5	3.9703e-6	5.57702e-4	2.39291e-4
chrX	129821388	129821488	10428566	0	-	0.51	(0.49,0.526]	chrX	1034408	62	INTRON	INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.11613	5.16148	5.20683	1.03252e-5	3.9703e-6	5.57702e-4	2.39291e-4
chr20	34102666	34102764	9727514	0	-	0.408163	(0.392,0.424]	chr20	963010	37	INTRON	INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	4.05097	5.161465	6.27196	1.60652e-6	1.10884e-10	1.08441e-4	1.47443e-8
chr21	41181875	41181975	9816757	0	+	0.34	(0.32,0.36]	chr21	973271	129	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	4.85778	5.161085	5.46439	1.99542e-10	1.3437e-11	2.57666e-8	2.04865e-9
chr12	11025806	11025905	7086589	0	-	0.262626	[0,0.32]	chr12	651846	33	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	105	2	4.77417	5.16094	5.54771	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	44274581	44274681	6887137	0	+	0.38	(0.36,0.392]	chr12	628155	628	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1:ENST00000553253.5:ENST00000550623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	4.30331	5.160209999999999	6.01711	2.34074e-5	9.48035e-9	0.00116109	9.6816e-7
chr2	202286565	202286664	1266155	0	+	0.383838	(0.36,0.392]	chr2	131981	17	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	4.30331	5.160209999999999	6.01711	2.34074e-5	9.48035e-9	0.00116109	9.6816e-7
chr9	3493836	3493936	5537937	0	-	0.38	(0.36,0.392]	chr9	498851	31	INTRON	INTRON	RFX3	ENSG00000080298.16	ENST00000617270.5:ENST00000382004.7:ENST00000449190.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.30331	5.160209999999999	6.01711	2.34074e-5	9.48035e-9	0.00116109	9.6816e-7
chr15	58997602	58997702	7993052	0	+	0.47	(0.459,0.49]	chr15	739016	88	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5:ENST00000557998.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.51255	5.15986	5.80717	6.3564e-4	1.22616e-8	0.0193151	1.22232e-6
chr3	17740907	17741004	2196578	0	-	0.484536	(0.459,0.49]	chr3	214334	1	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.51255	5.15986	5.80717	6.3564e-4	1.22616e-8	0.0193151	1.22232e-6
chr1	12585143	12585242	520673	0	-	0.464646	(0.459,0.49]	chr1	56279	41	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	4.54548	5.159855	5.77423	9.96436e-11	1e-12	1.34398e-8	1.72912e-10
chr15	48329164	48329264	8152699	0	-	0.49	(0.459,0.49]	chr15	755746	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUT-AS1	ENSG00000259488.2	ENST00000560323.1:ENST00000612262.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	4.8374	5.159	5.4806	4.11395e-7	7.08953e-9	3.09732e-5	7.39732e-7
chr12	57407585	57407684	7181995	0	-	0.585859	(0.57,0.629]	chr12	663024	114	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.47586	5.15892	5.84198	1.32384e-7	1.89943e-9	1.10534e-5	2.14969e-7
chr14	67934232	67934332	7669763	0	+	0.41	(0.392,0.424]	chr14	705758	250	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	4.9661	5.15851	5.35092	1.74707e-11	2.11409e-12	2.60849e-9	3.51389e-10
chr1	156253844	156253926	780529	0	-	0.52439	(0.49,0.526]	chr1	86494	2	SS3_PROX	SS3_PROX:INTRON	SMG5	ENSG00000198952.8	ENST00000361813.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	4.31204	5.157755	6.00347	1.82214e-9	4.64321e-10	2.07481e-7	5.72685e-8
chr13	113590838	113590938	7454694	0	+	0.52	(0.49,0.526]	chr13	686683	46	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	4.31204	5.157755	6.00347	1.82214e-9	4.64321e-10	2.07481e-7	5.72685e-8
chr1	52065808	52065908	145087	0	+	0.47	(0.459,0.49]	chr1	17788	4	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.76501	5.157145	5.54928	1.46149e-4	2.53394e-7	0.00564049	1.97194e-5
chr17	45538462	45538562	8947209	0	-	0.48	(0.459,0.49]	chr17	860742	167	INTRON	INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1:ENST00000661058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	16	2	4.76501	5.157145	5.54928	1.46149e-4	2.53394e-7	0.00564049	1.97194e-5
chr2	148098147	148098247	1164942	0	+	0.47	(0.459,0.49]	chr2	123785	262	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.76501	5.157145	5.54928	1.46149e-4	2.53394e-7	0.00564049	1.97194e-5
chr22	35887567	35887667	10027198	0	-	0.48	(0.459,0.49]	chr22	998794	471	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.76501	5.157145	5.54928	1.46149e-4	2.53394e-7	0.00564049	1.97194e-5
chr5	43147885	43147985	3167399	0	+	0.47	(0.459,0.49]	chr5	292371	82	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.76501	5.157145	5.54928	1.46149e-4	2.53394e-7	0.00564049	1.97194e-5
chr20	47266623	47266723	9753982	0	-	0.47	(0.459,0.49]	chr20	966700	38	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.83271	5.156655	5.4806	1.09213e-4	4.11395e-7	0.00442392	3.09732e-5
chr19	11181504	11181603	9435451	0	-	0.525253	(0.49,0.526]	chr19	925493	24	INTRON	INTRON	KANK2	ENSG00000197256.11	ENST00000586659.6:ENST00000589359.5:ENST00000589894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.69672	5.154395	5.61207	6.35974e-8	2.25376e-8	5.62451e-6	2.16877e-6
chr1	16336288	16336388	524056	0	-	0.34	(0.32,0.36]	chr1	56738	205	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	4.85778	5.154135	5.45049	1.99542e-10	1e-12	2.57666e-8	1.73382e-10
chr3	113674878	113674896	2383699	0	-	0.388889	(0.36,0.392]	chr3	229489	1	UTR5	UTR5:EXON_MRNA	USF3	ENSG00000176542.10	ENST00000491165.5:ENST00000316407.9:ENST00000478658.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	4.03087	5.153645	6.27642	3.77193e-6	2.38946e-10	2.29843e-4	3.06702e-8
chr17	28394210	28394310	8684564	0	+	0.48	(0.459,0.49]	chr17	821827	53	INTRON	INTRON	SARM1	ENSG00000004139.14	ENST00000379061.8:ENST00000585482.6:ENST00000585453.5:ENST00000578128.5:ENST00000577870.2:ENST00000580711.1:ENST00000579593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	4.7569	5.153090000000001	5.54928	2.53394e-7	1.37759e-8	1.97194e-5	1.37123e-6
chr3	37885675	37885775	1833941	0	+	0.47	(0.459,0.49]	chr3	185401	230	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	5.06024	5.15266	5.24508	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	172917001	172917096	3392679	0	+	0.578947	(0.57,0.629]	chr5	311245	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000523291.5:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000518247.5:ENST00000690977.1:ENST00000519567.5:ENST00000519796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	4.30502	5.15077	5.99652	4.90473e-10	2.40464e-10	5.99948e-8	3.08159e-8
chr7	111439273	111439372	4818099	0	-	0.50505	(0.49,0.526]	chr7	431941	465	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	20	245	2	4.96053	5.15064	5.34075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	123330478	123330578	5266344	0	-	0.53	(0.526,0.57]	chr8	470465	15	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.63387	5.14967	5.66547	2.57391e-4	4.05077e-8	0.00911512	3.67181e-6
chr10	68062201	68062301	6151359	0	-	0.28	[0,0.32]	chr10	550298	173	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.64799	5.14959	5.65119	2.00168e-6	1.20332e-6	1.30649e-4	8.2089e-5
chr11	94751670	94751770	6469296	0	+	0.31	[0,0.32]	chr11	584766	103	INTRON	INTRON	AMOTL1	ENSG00000166025.18	ENST00000299004.13	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.64799	5.14959	5.65119	2.00168e-6	1.20332e-6	1.30649e-4	8.2089e-5
chr16	69600322	69600422	8422431	0	+	0.41	(0.392,0.424]	chr16	788942	314	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	4.68015	5.149545	5.61894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	53138393	53138493	9674263	0	+	0.36	(0.32,0.36]	chr20	955958	1647	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.32952	5.14939	5.96926	0.00388505	3.15048e-8	0.0816719	2.93512e-6
chr14	69385969	69386067	7859817	0	-	0.44898	(0.424,0.459]	chr14	723863	50	INTRON	INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	4.35302	5.148935	5.94485	2.54851e-8	3.84993e-9	2.42771e-6	4.17496e-7
chr16	69428761	69428859	8421690	0	+	0.459184	(0.424,0.459]	chr16	788899	35	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	4.35302	5.148935	5.94485	2.54851e-8	3.84993e-9	2.42771e-6	4.17496e-7
chr17	37459784	37459883	8707198	0	+	0.59596	(0.57,0.629]	chr17	825051	8	INTRON	INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.74833	5.148275	5.54822	1.07277e-4	8.11421e-8	0.00442346	7.06304e-6
chrX	71541568	71541668	10158082	0	+	0.43	(0.424,0.459]	chrX	1012667	31	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	50	2	3.40221	5.14804	6.89387	1.77525e-12	1e-12	2.9809e-10	1.72912e-10
chr14	52940084	52940184	7832082	0	-	0.41	(0.392,0.424]	chr14	721392	118	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.61293	5.14758	5.68223	8.49057e-4	1.931e-7	0.0240064	1.56398e-5
chr16	68033039	68033138	8412254	0	+	0.414141	(0.392,0.424]	chr16	787875	56	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000569289.5:ENST00000564781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.61293	5.14758	5.68223	8.49057e-4	1.931e-7	0.0240064	1.56398e-5
chr18	36923904	36923961	9104467	0	+	0.421053	(0.392,0.424]	chr18	879379	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5:ENST00000591911.1:ENST00000590456.5:ENST00000586135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.61293	5.14758	5.68223	8.49057e-4	1.931e-7	0.0240064	1.56398e-5
chr5	79629974	79630074	3228775	0	+	0.55	(0.526,0.57]	chr5	298252	61	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	4.9468	5.1471	5.3474	1.05485e-6	4.79912e-10	7.33447e-5	5.90331e-8
chr1	155675496	155675596	777629	0	-	0.53	(0.526,0.57]	chr1	85797	4	SS3_PROX	SS3_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5:ENST00000466366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	5.03431	5.14709	5.25987	1.64566e-5	2.82947e-6	8.48927e-4	1.75466e-4
chr17	72794683	72794783	9004429	0	-	0.54	(0.526,0.57]	chr17	868461	576	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	5.03431	5.14709	5.25987	1.64566e-5	2.82947e-6	8.48927e-4	1.75466e-4
chr13	42063300	42063400	7365207	0	+	0.53	(0.526,0.57]	chr13	680646	140	INTRON	INTRON	DGKH	ENSG00000102780.17	ENST00000379274.6:ENST00000337343.9:ENST00000261491.9:ENST00000611224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	5.09465	5.14699	5.19933	1.16684e-5	4.16513e-6	6.16746e-4	2.48371e-4
chr7	105543939	105544038	4503406	0	+	0.545455	(0.526,0.57]	chr7	405794	9	INTRON	INTRON	RINT1	ENSG00000135249.8	ENST00000467392.5:ENST00000493041.5:ENST00000257700.7:ENST00000497979.5:ENST00000493258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	5.09465	5.14699	5.19933	1.16684e-5	4.16513e-6	6.16746e-4	2.48371e-4
chr12	64438545	64438644	6936230	0	+	0.333333	(0.32,0.36]	chr12	634861	25	INTRON	INTRON	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.27744	5.1464	6.01536	6.03386e-5	9.59726e-9	0.00268144	9.74486e-7
chr18	9154638	9154738	9055218	0	+	0.4	(0.392,0.424]	chr18	875173	164	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.60865	5.14544	5.68223	1.06475e-6	1.931e-7	7.43219e-5	1.56398e-5
chr5	77380771	77380871	3225721	0	+	0.42	(0.392,0.424]	chr5	297957	270	INTRON	INTRON	PDE8B	ENSG00000113231.14	ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.60865	5.14544	5.68223	1.06475e-6	1.931e-7	7.43219e-5	1.56398e-5
chr11	32097737	32097837	6364283	0	+	0.47	(0.459,0.49]	chr11	570006	4	SS5_PROX	SS5_PROX:INTRON	RCN1	ENSG00000049449.10	ENST00000054950.4:ENST00000532721.1:ENST00000533898.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	139	2	4.74509	5.14542	5.54575	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	24268881	24268980	1397132	0	-	0.40404	(0.392,0.424]	chr2	144896	68	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.11125	5.1446749999999994	5.1781	3.31137e-5	2.48959e-5	0.00159224	0.00122627
chr2	161327157	161327257	1193045	0	+	0.42	(0.392,0.424]	chr2	125457	79	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	5.11125	5.1446749999999994	5.1781	3.31137e-5	2.48959e-5	0.00159224	0.00122627
chrX	123983383	123983483	10217832	0	+	0.42	(0.392,0.424]	chrX	1017535	196	INTRON	INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	5.11125	5.1446749999999994	5.1781	3.31137e-5	2.48959e-5	0.00159224	0.00122627
chr8	125302342	125302442	5087110	0	+	0.54	(0.526,0.57]	chr8	455136	1197	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	4.70872	5.144489999999999	5.58026	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	159796305	159796405	2067967	0	+	0.52	(0.49,0.526]	chr3	205328	308	INTRON	INTRON	IQCJ-SCHIP1	ENSG00000283154.3	ENST00000485419.7:ENST00000476809.7:ENST00000638749.2:ENST00000412423.8:ENST00000527095.7:ENST00000689690.1:ENST00000460298.3:ENST00000638311.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	4.88296	5.143215	5.40347	8.97943e-10	1e-12	1.06516e-7	1.72912e-10
chr22	50352440	50352540	9976501	0	+	0.6	(0.57,0.629]	chr22	992659	85	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.53486	5.142704999999999	5.75055	3.95206e-4	6.63557e-9	0.0135724	6.91177e-7
chr15	66748118	66748218	8012794	0	+	0.32	[0,0.32]	chr15	741000	306	INTRON	INTRON	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	5.10715	5.142564999999999	5.17798	7.53496e-5	5.34166e-9	0.00322158	5.66355e-7
chrX	384376	384476	10249466	0	-	0.52	(0.49,0.526]	chrX	1021378	105	INTRON	INTRON	PPP2R3B	ENSG00000167393.18	ENST00000390665.9:ENST00000445792.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.85538	5.142545	5.42971	6.26806e-5	5.89334e-7	0.00277665	4.28084e-5
chr1	153731178	153731277	302599	0	+	0.30303	[0,0.32]	chr1	32363	20	INTRON	INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr10	125731178	125731271	6011423	0	+	0.301075	[0,0.32]	chr10	539722	4	INTRON	INTRON	EDRF1	ENSG00000107938.18	ENST00000481600.5:ENST00000419769.6:ENST00000368815.6:ENST00000525091.5:ENST00000337623.7:ENST00000356792.9:ENST00000530795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr16	31189405	31189484	8372557	0	+	0.265823	[0,0.32]	chr16	782210	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2:ENST00000564766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr17	46148937	46149036	8948892	0	-	0.30303	[0,0.32]	chr17	860854	3	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr18	31863432	31863531	9205037	0	-	0.272727	[0,0.32]	chr18	886768	51	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr2	63373952	63374052	1464007	0	-	0.26	[0,0.32]	chr2	152049	41	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409354.6:ENST00000409199.5:ENST00000409120.5:ENST00000398544.7:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr2	201408496	201408596	1670157	0	-	0.31	[0,0.32]	chr2	171664	5	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr2	203533629	203533727	1675963	0	-	0.316327	[0,0.32]	chr2	172350	3	INTRON	INTRON	RAPH1	ENSG00000173166.18	ENST00000457812.5:ENST00000319170.10:ENST00000630330.2:ENST00000308091.8:ENST00000453034.5:ENST00000420371.2:ENST00000465669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr20	20660471	20660571	9716752	0	-	0.32	[0,0.32]	chr20	961668	65	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr20	35663166	35663265	9735429	0	-	0.292929	[0,0.32]	chr20	964048	38	INTRON	INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1:ENST00000475146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr5	34810414	34810511	3145455	0	+	0.319588	[0,0.32]	chr5	290418	14	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000512629.5:ENST00000428746.6:ENST00000508777.5:ENST00000503673.5:ENST00000515799.5:ENST00000506376.1:ENST00000507276.5:ENST00000509247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr5	43312021	43312121	3459214	0	-	0.32	[0,0.32]	chr5	318060	38	INTRON	INTRON	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr7	80649355	80649454	4451890	0	+	0.292929	[0,0.32]	chr7	400042	21	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000309881.11:ENST00000534394.5:ENST00000438020.5:ENST00000436384.5:ENST00000428497.5:ENST00000433696.6:ENST00000538969.5:ENST00000544133.5:ENST00000447544.7:ENST00000441109.6:ENST00000482059.6:ENST00000394788.7:ENST00000432207.5:ENST00000426978.5:ENST00000413265.5:ENST00000419819.2:ENST00000441034.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	5.10715	5.142175	5.1772	7.53496e-5	5.87341e-5	0.00322158	0.00262682
chr14	37294844	37294944	7604386	0	+	0.45	(0.424,0.459]	chr14	699691	41	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000694965.1:ENST00000553349.1:ENST00000695406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	4.14004	5.1416450000000005	6.14325	2.32947e-7	3.56746e-10	1.87449e-5	4.46854e-8
chr8	80105919	80106019	5200962	0	-	0.42	(0.392,0.424]	chr8	465844	252	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.53319	5.1414550000000006	5.74972	1.61757e-6	1.25981e-7	1.08646e-4	1.05791e-5
chr22	31720868	31720967	10016533	0	-	0.343434	(0.32,0.36]	chr22	998237	32	INTRON	INTRON	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000461722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	4.88688	5.14132	5.39576	9.86331e-6	9.03252e-8	5.39872e-4	7.79413e-6
chr22	41541979	41542077	10044278	0	-	0.653061	(0.629,1]	chr22	1001547	8	INTRON	INTRON	POLR3H	ENSG00000100413.17	ENST00000355209.9:ENST00000396504.6:ENST00000337566.9:ENST00000431534.5:ENST00000432789.1:ENST00000407461.5:ENST00000442616.1:ENST00000420561.1:ENST00000483837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.94001	5.141030000000001	6.34205	7.28993e-6	1e-12	4.19849e-4	1.72912e-10
chr12	47770948	47771040	7155050	0	-	0.608696	(0.57,0.629]	chr12	657155	2	UTR5	UTR5:EXON_MRNA	RAPGEF3	ENSG00000079337.16	ENST00000549151.5:ENST00000548919.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.03134	5.139025	5.24671	1.22122e-5	2.15311e-6	6.58806e-4	1.3963e-4
chr17	37343186	37343284	8919030	0	-	0.581633	(0.57,0.629]	chr17	855248	30	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	19	2	5.03134	5.139025	5.24671	1.22122e-5	2.15311e-6	6.58806e-4	1.3963e-4
chr10	79392984	79393083	6179879	0	-	0.575758	(0.57,0.629]	chr10	553499	62	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	5.09893	5.138925	5.17892	7.91825e-6	3.48382e-6	4.54299e-4	2.13641e-4
chr3	4510183	4510283	1751274	0	+	0.55	(0.526,0.57]	chr3	179421	153	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649669.1:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	3.68741	5.13891	6.59041	1.20404e-7	1e-12	1.00551e-5	1.72912e-10
chr5	711607	711703	3410862	0	-	0.53125	(0.526,0.57]	chr5	313578	14	UTR3	UTR3:EXON_MRNA	ZDHHC11B	ENSG00000206077.14	ENST00000508859.8:ENST00000522356.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	4.67101	5.137765	5.60452	6.77869e-8	2.77771e-8	5.95616e-6	2.62893e-6
chr3	56636532	56636630	2290945	0	-	0.438776	(0.424,0.459]	chr3	224202	22	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000431842.6:ENST00000493960.6:ENST00000355628.9:ENST00000614531.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.65351	5.137645	5.62178	2.83203e-7	1.8873e-7	2.17914e-5	1.54537e-5
chr5	72197017	72197116	3210406	0	+	0.454545	(0.424,0.459]	chr5	296335	33	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.65351	5.137645	5.62178	2.83203e-7	1.8873e-7	2.17914e-5	1.54537e-5
chr4	25400183	25400282	2587290	0	+	0.363636	(0.36,0.392]	chr4	248423	29	INTRON	INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000503805.5:ENST00000505842.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.3312	5.137565	5.94393	0.00387074	1.58245e-8	0.078873	1.55285e-6
chr6	57477677	57477777	3800253	0	+	0.37	(0.36,0.392]	chr6	348664	426	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.3312	5.137565	5.94393	0.00387074	1.58245e-8	0.078873	1.55285e-6
chr15	64342068	64342167	8213784	0	-	0.414141	(0.392,0.424]	chr15	761669	252	INTRON	INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000635529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.75797	5.13689	5.51581	1.07176e-6	2.01084e-7	7.36955e-5	1.60882e-5
chr9	125791921	125792021	5488070	0	+	0.41	(0.392,0.424]	chr9	490714	59	INTRON	INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000497091.1:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000491787.7:ENST00000447726.6:ENST00000673571.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.75797	5.13689	5.51581	1.07176e-6	2.01084e-7	7.36955e-5	1.60882e-5
chr11	68576942	68577042	6429678	0	+	0.41	(0.392,0.424]	chr11	580082	5	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000525421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.44207	5.1367449999999995	5.83142	5.58952e-6	3.48252e-8	3.2822e-4	3.23132e-6
chr3	65945651	65945751	2325578	0	-	0.4	(0.392,0.424]	chr3	225654	381	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	4.44207	5.1367449999999995	5.83142	5.58952e-6	3.48252e-8	3.2822e-4	3.23132e-6
chr2	101004388	101004486	1105226	0	+	0.408163	(0.392,0.424]	chr2	118468	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	5.10995	5.13525	5.16055	4.63789e-10	1e-12	5.6824e-8	1.72912e-10
chr20	63678535	63678630	9687519	0	+	0.621053	(0.57,0.629]	chr20	957684	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	373	2	4.59878	5.135035	5.67129	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	27488186	27488285	552017	0	-	0.414141	(0.392,0.424]	chr1	61297	589	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.36677	5.132905	5.89904	8.10105e-6	2.16736e-8	4.57465e-4	2.09062e-6
chr2	31975994	31976094	1411502	0	-	0.43	(0.424,0.459]	chr2	146770	128	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	4.01593	5.13232	6.24871	8.03177e-5	6.7358e-11	0.00342222	9.26681e-9
chr6	165602274	165602374	4266754	0	-	0.55	(0.526,0.57]	chr6	386853	16	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.94567	5.131795	6.31792	3.05141e-7	2.00417e-12	2.36544e-5	3.33638e-10
chr12	110396652	110396752	7277000	0	-	0.47	(0.459,0.49]	chr12	670648	2	SS3_PROX	SS3_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000464697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	4.38704	5.131785	5.87653	1.51757e-9	1e-12	1.74447e-7	1.72912e-10
chr10	18620490	18620590	6077638	0	-	0.44	(0.424,0.459]	chr10	544970	38	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.01346	5.131085000000001	6.24871	0.00778514	6.7358e-11	0.130982	9.26681e-9
chr10	114502865	114502965	6259017	0	-	0.38	(0.36,0.392]	chr10	560387	106	INTRON	INTRON	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7:ENST00000369253.6:ENST00000369256.6:ENST00000649363.1:ENST00000651092.1:ENST00000651023.1:ENST00000428430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr11	83061275	83061374	6676574	0	-	0.373737	(0.36,0.392]	chr11	611702	7	INTRON	INTRON	RAB30	ENSG00000137502.10	ENST00000527633.6:ENST00000533486.5:ENST00000612684.4:ENST00000534141.5:ENST00000524635.1:ENST00000526205.5:ENST00000533276.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr12	71652377	71652476	7210285	0	-	0.373737	(0.36,0.392]	chr12	665072	42	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr13	75806529	75806619	7397077	0	+	0.377778	(0.36,0.392]	chr13	683284	4	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000526528.1:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr17	45543531	45543629	8947262	0	-	0.387755	(0.36,0.392]	chr17	860760	3	INTRON	INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1:ENST00000661058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr17	63568576	63568676	8775044	0	+	0.37	(0.36,0.392]	chr17	834932	155	INTRON	INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000690481.1:ENST00000693226.1:ENST00000686787.1:ENST00000691063.1:ENST00000415273.2:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr17	77169540	77169640	8805424	0	+	0.38	(0.36,0.392]	chr17	838804	241	INTRON	INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000586429.5:ENST00000586390.5:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000587820.1:ENST00000591786.5:ENST00000591437.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr7	5434496	5434596	4616549	0	-	0.37	(0.36,0.392]	chr7	415833	26	INTRON	INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr9	128517304	128517402	5502781	0	+	0.377551	(0.36,0.392]	chr9	492522	5	INTRON	INTRON	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000494417.2:ENST00000309971.9:ENST00000684139.1:ENST00000372770.4:ENST00000683288.1:ENST00000682831.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.96718	5.13105	5.29492	1.24104e-4	1.51392e-5	0.0049353	7.85619e-4
chr1	35852226	35852322	106011	0	+	0.375	(0.36,0.392]	chr1	12053	8	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr14	63936314	63936414	7650284	0	+	0.37	(0.36,0.392]	chr14	703894	267	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000341472.9:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr16	28203594	28203694	8539885	0	-	0.39	(0.36,0.392]	chr16	802974	222	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr17	63748554	63748654	8981278	0	-	0.38	(0.36,0.392]	chr17	865347	12	INTRON	INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr22	49806155	49806254	10063906	0	-	0.363636	(0.36,0.392]	chr22	1003522	14	INTRON	INTRON	BRD1	ENSG00000100425.19	ENST00000404760.6:ENST00000404034.5:ENST00000216267.12:ENST00000438393.5:ENST00000457780.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr9	78270045	78270143	5408784	0	+	0.367347	(0.36,0.392]	chr9	483071	30	INTRON	INTRON	CEP78	ENSG00000148019.14	ENST00000424347.6:ENST00000643273.2:ENST00000645865.1:ENST00000647199.1:ENST00000642654.1:ENST00000643847.1:ENST00000376598.3:ENST00000447629.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	5.03921	5.130855	5.2225	9.59768e-5	2.06042e-5	0.00399331	0.00103061
chr10	11861411	11861511	5789828	0	+	0.54	(0.526,0.57]	chr10	521425	88	INTRON	INTRON	PROSER2	ENSG00000148426.13	ENST00000474155.1:ENST00000277570.10:ENST00000622831.4:ENST00000444604.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.84794	5.128025	5.40811	6.50622e-5	6.86579e-7	0.00284455	4.92496e-5
chr10	17687226	17687326	5800016	0	+	0.53	(0.526,0.57]	chr10	522295	19	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1:ENST00000486183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.84794	5.128025	5.40811	6.50622e-5	6.86579e-7	0.00284455	4.92496e-5
chr15	40333011	40333108	8135897	0	-	0.56701	(0.526,0.57]	chr15	752680	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCDC9B	ENSG00000188549.13	ENST00000397536.7:ENST00000382688.8:ENST00000559313.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.84794	5.128025	5.40811	6.50622e-5	6.86579e-7	0.00284455	4.92496e-5
chr17	30824022	30824122	8907302	0	-	0.54	(0.526,0.57]	chr17	853669	1	SS5_PROX	SS5_PROX:INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.84794	5.128025	5.40811	6.50622e-5	6.86579e-7	0.00284455	4.92496e-5
chr20	35736867	35736967	9736167	0	-	0.54	(0.526,0.57]	chr20	964240	3	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5:ENST00000455343.5:ENST00000416108.5:ENST00000426951.5:ENST00000477334.1:ENST00000442447.5:ENST00000449489.5:ENST00000433027.5:ENST00000487604.1:ENST00000453310.5:ENST00000416529.5:ENST00000397370.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.84794	5.128025	5.40811	6.50622e-5	6.86579e-7	0.00284455	4.92496e-5
chr12	121351550	121351633	7303689	0	-	0.53012	(0.526,0.57]	chr12	674256	4	SS3_PROX	SS3_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000544442.5:ENST00000536416.5:ENST00000539871.1:ENST00000536837.1:ENST00000545801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.90802	5.12771	5.3474	4.81512e-5	1.05485e-6	0.00220626	7.33447e-5
chr14	45141109	45141209	7613937	0	+	0.53	(0.526,0.57]	chr14	700458	4	SS5_PROX	SS5_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696657.1:ENST00000696656.1:ENST00000696678.1:ENST00000696679.1:ENST00000696677.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.90802	5.12771	5.3474	4.81512e-5	1.05485e-6	0.00220626	7.33447e-5
chr20	44501800	44501894	9748188	0	-	0.287234	[0,0.32]	chr20	965704	1	INTRON	INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.31876	5.12759	5.93642	5.15904e-5	3.87502e-8	0.00235512	3.55241e-6
chr1	119937661	119937756	739356	0	-	0.505263	(0.49,0.526]	chr1	79314	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	4.32422	5.126155000000001	5.92809	2.73466e-9	1.02462e-9	3.02192e-7	1.20726e-7
chr1	91698630	91698729	687574	0	-	0.424242	(0.392,0.424]	chr1	74786	1	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000470600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr11	103207517	103207615	6481661	0	+	0.397959	(0.392,0.424]	chr11	585807	22	INTRON	INTRON	DYNC2H1	ENSG00000187240.17	ENST00000375735.7:ENST00000650373.2:ENST00000649323.1:ENST00000334267.11:ENST00000533027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr15	85018124	85018224	8068698	0	+	0.41	(0.392,0.424]	chr15	745864	354	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr3	130690854	130690954	2435944	0	-	0.42	(0.392,0.424]	chr3	233601	2	SS3_PROX	SS3_PROX:INTRON	PIK3R4	ENSG00000196455.8	ENST00000356763.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr5	1510278	1510377	3414177	0	-	0.414141	(0.392,0.424]	chr5	314237	83	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr5	110753103	110753202	3274250	0	+	0.393939	(0.392,0.424]	chr5	301467	45	INTRON	INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.85654	5.125665	5.39479	1.84333e-4	4.26975e-6	0.00688171	2.57151e-4
chr6	165839892	165839992	4269145	0	-	0.48	(0.459,0.49]	chr6	386909	108	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	335	2	4.68332	5.1255500000000005	5.56778	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	51673313	51673413	143680	0	+	0.42	(0.392,0.424]	chr1	17603	31	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr1	200856525	200856625	395207	0	+	0.41	(0.392,0.424]	chr1	42387	4	SS5_PROX	SS5_PROX:INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6:ENST00000475326.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr11	115219185	115219284	6746214	0	-	0.393939	(0.392,0.424]	chr11	615690	8	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000612235.4:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000616271.4:ENST00000541434.5:ENST00000542450.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr6	1842141	1842241	3986986	0	-	0.41	(0.392,0.424]	chr6	361408	992	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr6	117678380	117678479	3861411	0	+	0.40404	(0.392,0.424]	chr6	353514	19	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr8	54049913	54050012	5170952	0	-	0.414141	(0.392,0.424]	chr8	463643	14	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000520718.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.92302	5.125345	5.32767	1.45314e-4	5.95442e-6	0.00569484	3.4453e-4
chr2	28777168	28777261	970865	0	+	0.225806	[0,0.32]	chr2	106067	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.24175	5.124555	6.00736	6.90565e-5	2.47801e-8	0.00300464	2.36756e-6
chr4	57008774	57008872	2628742	0	+	0.428571	(0.424,0.459]	chr4	252233	14	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.89477	5.124395	6.35402	2.5121e-4	6.61571e-12	0.00902798	1.03402e-9
chr1	174530043	174530143	353744	0	+	0.62	(0.57,0.629]	chr1	38884	1355	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.86692	5.12384	5.38076	4.28317e-5	5.85803e-7	0.0019752	4.27724e-5
chr14	31372980	31373076	7795699	0	-	0.572917	(0.57,0.629]	chr14	717957	7	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000538864.6:ENST00000550366.5:ENST00000549185.5:ENST00000552500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.86692	5.12384	5.38076	4.28317e-5	5.85803e-7	0.0019752	4.27724e-5
chr16	13920859	13920957	8327324	0	+	0.571429	(0.57,0.629]	chr16	775440	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ERCC4	ENSG00000175595.16	ENST00000682617.1:ENST00000311895.8:ENST00000683962.1:ENST00000682909.1:ENST00000682826.1:ENST00000575156.5:ENST00000683407.1:ENST00000682552.1:ENST00000683277.1:ENST00000576348.1:ENST00000682568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.86692	5.12384	5.38076	4.28317e-5	5.85803e-7	0.0019752	4.27724e-5
chr17	16017607	16017706	8659120	0	+	0.575758	(0.57,0.629]	chr17	818811	107	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.86692	5.12384	5.38076	4.28317e-5	5.85803e-7	0.0019752	4.27724e-5
chr22	24561893	24561993	9909690	0	+	0.6	(0.57,0.629]	chr22	984393	37	INTRON	INTRON	SNRPD3	ENSG00000100028.12	ENST00000215829.8:ENST00000402849.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.93425	5.123525	5.3128	2.91369e-5	9.9438e-7	0.00141183	7.00342e-5
chr7	127973377	127973476	4537514	0	+	0.474747	(0.459,0.49]	chr7	407904	238	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	4.76501	5.1232050000000005	5.4814	1.46149e-4	1e-12	0.00564049	1.72912e-10
chr7	111320285	111320385	4816905	0	-	0.42	(0.392,0.424]	chr7	431926	3564	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	78	2	4.91651	5.12268	5.32885	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	40087177	40087265	8713387	0	+	0.522727	(0.49,0.526]	chr17	826272	3	SS5_PROX	SS5_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	4.10456	5.12265	6.14074	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	110816398	110816498	4811861	0	-	0.44	(0.424,0.459]	chr7	431911	1510	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.87285	5.122199999999999	5.37155	2.42251e-6	2.03044e-8	1.53938e-4	1.97932e-6
chr7	131171300	131171400	4547476	0	+	0.43	(0.424,0.459]	chr7	409202	280	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.87285	5.122199999999999	5.37155	2.42251e-6	2.03044e-8	1.53938e-4	1.97932e-6
chr12	39424934	39425034	7142417	0	-	0.43	(0.424,0.459]	chr12	655948	543	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.29889	5.1218699999999995	5.94485	1.12945e-5	3.84993e-9	6.02727e-4	4.17496e-7
chr1	10583551	10583651	31531	0	+	0.42	(0.392,0.424]	chr1	3335	469	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.03703	5.12055	6.20407	1.48653e-4	2.05488e-10	0.00578975	2.64594e-8
chr17	77089271	77089364	8804605	0	+	0.537634	(0.526,0.57]	chr17	838758	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG20:SEC14L1	ENSG00000234912.12:ENSG00000129657.16	ENST00000564414.5:ENST00000568056.5:ENST00000568363.5:ENST00000647734.1:ENST00000434411.6:ENST00000648926.1:ENST00000649047.1:ENST00000649712.1:ENST00000650557.1:ENST00000647904.1:ENST00000648984.1:ENST00000392476.6:ENST00000589827.5:ENST00000561721.6:ENST00000561633.5:ENST00000564509.5:ENST00000565256.1:ENST00000566583.5:ENST00000648740.1:ENST00000569632.1:ENST00000366365.3:ENST00000430767.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	41	483	2	5.08971	5.119765	5.14982	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	41883063	41883162	9955577	0	+	0.565657	(0.526,0.57]	chr22	990617	17	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	4.69612	5.11932	5.54252	1.66713e-7	1.35215e-8	1.36401e-5	1.35132e-6
chr2	73936239	73936338	1078102	0	+	0.50505	(0.49,0.526]	chr2	114809	32	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	4.96426	5.118945	5.27363	2.39614e-10	1.61215e-12	3.07606e-8	2.70476e-10
chr16	4668512	4668612	8310137	0	+	0.43	(0.424,0.459]	chr16	774084	2	SS5_PROX	SS5_PROX:INTRON	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5:ENST00000590790.5:ENST00000593224.1:ENST00000587145.5:ENST00000590457.5:ENST00000588015.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	152	2	4.71805	5.11864	5.51923	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	87312875	87312974	6194211	0	-	0.30303	[0,0.32]	chr10	554192	44	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.46657	5.118005	5.76944	0.00288167	2.56854e-7	0.0662445	2.02856e-5
chr3	33681480	33681580	2232174	0	-	0.31	[0,0.32]	chr3	216016	176	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.46657	5.118005	5.76944	0.00288167	2.56854e-7	0.0662445	2.02856e-5
chr3	125366409	125366509	2419324	0	-	0.32	[0,0.32]	chr3	231886	87	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.46657	5.118005	5.76944	0.00288167	2.56854e-7	0.0662445	2.02856e-5
chr7	94644767	94644867	4778050	0	-	0.33	(0.32,0.36]	chr7	427836	1	SS3_PROX	SS3_PROX:INTRON	SGCE	ENSG00000127990.19	ENST00000648936.2:ENST00000647351.1:ENST00000447873.6:ENST00000643206.1:ENST00000644816.1:ENST00000642933.1:ENST00000646489.1:ENST00000445866.7:ENST00000437425.7:ENST00000645725.1:ENST00000646559.1:ENST00000644551.1:ENST00000642904.1:ENST00000646137.1:ENST00000643605.1:ENST00000646434.1:ENST00000644375.1:ENST00000643272.1:ENST00000645101.1:ENST00000646910.1:ENST00000646943.1:ENST00000645262.1:ENST00000646466.1:ENST00000642394.1:ENST00000645445.1:ENST00000643610.1:ENST00000644681.1:ENST00000645535.1:ENST00000644122.1:ENST00000646098.1:ENST00000644609.1:ENST00000642707.1:ENST00000642353.1:ENST00000647110.1:ENST00000644639.1:ENST00000642759.1:ENST00000646600.1:ENST00000646265.1:ENST00000644682.1:ENST00000642441.1:ENST00000642638.1:ENST00000646119.1:ENST00000644116.1:ENST00000642754.1:ENST00000643714.1:ENST00000643041.1:ENST00000644087.1:ENST00000647048.1:ENST00000647018.1:ENST00000646301.1:ENST00000647096.1:ENST00000647334.1:ENST00000428696.7:ENST00000645579.1:ENST00000646879.1:ENST00000643193.1:ENST00000415788.3:ENST00000643020.1:ENST00000645109.1:ENST00000642564.1:ENST00000643128.1:ENST00000643903.1:ENST00000646682.1:ENST00000642169.1:ENST00000644201.1:ENST00000645920.1:ENST00000645390.1:ENST00000450385.6:ENST00000644924.1:ENST00000425444.2:ENST00000646761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	5.09957	5.11791	5.13625	7.13152e-9	1e-12	7.41948e-7	1.73382e-10
chr1	59299743	59299843	157588	0	+	0.44	(0.424,0.459]	chr1	18969	22	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000582567.1:ENST00000413489.5:ENST00000634606.1:ENST00000474476.5:ENST00000462744.5:ENST00000371218.8:ENST00000495718.5:ENST00000583635.1:ENST00000430447.5:ENST00000634364.1:ENST00000303721.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.96809	5.117825	5.26756	6.10851e-5	8.0232e-6	0.0027377	4.54299e-4
chr17	63170211	63170311	8771997	0	+	0.43	(0.424,0.459]	chr17	834656	151	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8:ENST00000580068.5:ENST00000580466.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.96809	5.117825	5.26756	6.10851e-5	8.0232e-6	0.0027377	4.54299e-4
chr22	17926765	17926865	9982453	0	-	0.43	(0.424,0.459]	chr22	993630	195	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.96809	5.117825	5.26756	6.10851e-5	8.0232e-6	0.0027377	4.54299e-4
chr7	130996270	130996368	4848079	0	-	0.428571	(0.424,0.459]	chr7	434464	18	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.96809	5.117825	5.26756	6.10851e-5	8.0232e-6	0.0027377	4.54299e-4
chrX	31164549	31164649	10300023	0	-	0.43	(0.424,0.459]	chrX	1024229	162	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000481143.2:ENST00000378723.7:ENST00000681989.1:ENST00000681026.1:ENST00000679437.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000679850.1:ENST00000680701.1:ENST00000680557.1:ENST00000620040.5:ENST00000684072.1:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000684350.1:ENST00000682207.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000679706.1:ENST00000681153.1:ENST00000683503.1:ENST00000683995.1:ENST00000684342.1:ENST00000683957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.96809	5.117825	5.26756	6.10851e-5	8.0232e-6	0.0027377	4.54299e-4
chr10	68759514	68759614	5873157	0	+	0.43	(0.424,0.459]	chr10	526930	2	PRIMIRNA	PRIMIRNA:INTRON	CCAR1:ENSG00000221184	ENSG00000060339.14:ENSG00000221184.1	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1:ENST00000408257.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	13	2	5.05139	5.117635	5.18388	4.27641e-5	1.21594e-5	0.00199812	6.58699e-4
chr3	47160429	47160529	2262173	0	-	0.45	(0.424,0.459]	chr3	218501	334	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.05139	5.117635	5.18388	4.27641e-5	1.21594e-5	0.00199812	6.58699e-4
chr5	72196918	72197017	3210405	0	+	0.454545	(0.424,0.459]	chr5	296335	32	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.05139	5.117635	5.18388	4.27641e-5	1.21594e-5	0.00199812	6.58699e-4
chr8	90638358	90638458	5213932	0	-	0.43	(0.424,0.459]	chr8	466643	63	INTRON	INTRON	TMEM64	ENSG00000180694.14	ENST00000418210.2:ENST00000458549.7:ENST00000422900.1:ENST00000519519.5:ENST00000521852.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	5.05139	5.117635	5.18388	4.27641e-5	1.21594e-5	0.00199812	6.58699e-4
chr7	102128776	102128876	4496525	0	+	0.46	(0.459,0.49]	chr7	404933	31	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.4955	5.1168700000000005	5.73824	5.33756e-7	2.1921e-8	3.92587e-5	2.0899e-6
chr6	19838109	19838195	3724806	0	+	0.802326	(0.629,1]	chr6	338513	4	CDS	CDS:EXON_MRNA	ID4	ENSG00000172201.12	ENST00000378700.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.74169	5.11633	5.49097	7.88558e-5	9.87659e-8	0.00339056	8.31085e-6
chr21	16588663	16588747	9790795	0	+	0.607143	(0.57,0.629]	chr21	970680	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000663661.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000656642.2:ENST00000660908.1:ENST00000667804.1:ENST00000400178.7:ENST00000456342.6:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000663933.1:ENST00000670290.1:ENST00000668830.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1:ENST00000654245.1:ENST00000665504.1:ENST00000441820.5:ENST00000602659.2:ENST00000659483.1:ENST00000661939.1:ENST00000666305.1:ENST00000653518.1:ENST00000666704.1:ENST00000602323.1:ENST00000660609.1:ENST00000655790.1:ENST00000660035.1	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	4.23559	5.116055	5.99652	1.56337e-9	2.40464e-10	1.78766e-7	3.08159e-8
chr10	110946441	110946540	5978515	0	+	0.272727	[0,0.32]	chr10	537287	46	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000691151.1:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000489783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	4.81498	5.115565	5.41615	3.34826e-7	1.29208e-10	2.57546e-5	1.69913e-8
chr11	122196819	122196919	6764184	0	-	0.34	(0.32,0.36]	chr11	617585	69	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000664908.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000534782.4:ENST00000532350.6:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000665305.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	4.11199	5.115475	6.11896	2.44546e-6	4.65151e-9	1.55199e-4	4.96782e-7
chr15	85101592	85101692	8069550	0	+	0.45	(0.424,0.459]	chr15	745930	10	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	125	2	4.96272	5.1153200000000005	5.26792	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	125988384	125988484	3872388	0	+	0.49	(0.459,0.49]	chr6	354135	8	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.27284	5.114800000000001	5.95676	0.00227779	1.17119e-9	0.0552099	1.35849e-7
chr2	33039700	33039800	984398	0	+	0.27	[0,0.32]	chr2	107453	181	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.79564	5.114604999999999	5.43357	5.01883e-4	8.40147e-6	0.0161742	4.71048e-4
chrX	54023243	54023343	10348341	0	-	0.3	[0,0.32]	chrX	1028054	4	SS3_PROX	SS3_PROX:INTRON	PHF8	ENSG00000172943.21	ENST00000357988.9:ENST00000338154.11:ENST00000686349.1:ENST00000687764.1:ENST00000338946.11:ENST00000396282.7:ENST00000322659.12:ENST00000425862.5:ENST00000437224.5:ENST00000415025.5:ENST00000453905.5:ENST00000445025.1:ENST00000433120.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.79564	5.114604999999999	5.43357	5.01883e-4	8.40147e-6	0.0161742	4.71048e-4
chr20	34035334	34035433	9630738	0	+	0.292929	[0,0.32]	chr20	950620	17	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.8652	5.1141950000000005	5.36319	4.11137e-4	1.13263e-5	0.0138446	6.25152e-4
chr4	108973866	108973966	2989854	0	-	0.22	[0,0.32]	chr4	280082	1	SS5_PROX	SS5_PROX:INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.8652	5.1141950000000005	5.36319	4.11137e-4	1.13263e-5	0.0138446	6.25152e-4
chr17	15528811	15528911	8880471	0	-	0.54	(0.526,0.57]	chr17	849632	118	INTRON	INTRON	TVP23C	ENSG00000175106.17	ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	5.02814	5.113735	5.19933	4.16513e-6	1.23415e-10	2.48371e-4	1.62694e-8
chr14	73109492	73109592	7697066	0	+	0.63	(0.629,1]	chr14	707117	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1:ENST00000530978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	4.51274	5.113605	5.71447	9.31593e-9	6.42213e-9	9.5667e-7	6.7535e-7
chr12	62330096	62330196	6929791	0	+	0.3	[0,0.32]	chr12	634220	13	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	45	2	4.27158	5.112775	5.95397	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	107594814	107594913	714475	0	-	0.484848	(0.459,0.49]	chr1	76479	180	INTRON	INTRON	VAV3	ENSG00000134215.16	ENST00000370056.9:ENST00000527011.5:ENST00000529413.5:ENST00000525460.5:ENST00000415432.6:ENST00000343258.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	4.53838	5.11118	5.68398	2.24187e-7	5.57196e-8	1.8079e-5	4.89622e-6
chrX	73821639	73821738	10373423	0	-	0.484848	(0.459,0.49]	chrX	1029941	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	4.53838	5.11118	5.68398	2.24187e-7	5.57196e-8	1.8079e-5	4.89622e-6
chr4	101094115	101094215	2971998	0	-	0.38	(0.36,0.392]	chr4	278731	2	SS3_PROX	SS3_PROX:INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000492351.6:ENST00000510292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	4.4984	5.110565	5.72273	9.1492e-11	1e-12	1.23546e-8	1.73382e-10
chr2	30579557	30579657	975808	0	+	0.4	(0.392,0.424]	chr2	106561	110	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.89327	5.11047	5.32767	5.95442e-6	3.77123e-8	3.4453e-4	3.4456e-6
chr7	112159307	112159407	4823738	0	-	0.56	(0.526,0.57]	chr7	432278	1548	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	4.46332	5.110390000000001	5.75746	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	103310357	103310433	10397437	0	-	0.631579	(0.629,1]	chrX	1031949	1	CDS	CDS:UTR5:EXON_MRNA	BEX2	ENSG00000133134.12	ENST00000372677.8:ENST00000536889.1:ENST00000372674.5:ENST00000449185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.96491	5.11021	5.25551	1.5112e-5	1.19594e-6	8.01855e-4	8.2089e-5
chr7	3450781	3450881	4288487	0	+	0.4	(0.392,0.424]	chr7	388850	1485	INTRON	INTRON	SDK1	ENSG00000146555.20	ENST00000404826.7:ENST00000389531.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.25372	5.11017	5.96662	2.90267e-5	6.28695e-9	0.00141183	6.5739e-7
chrX	111148290	111148390	10204589	0	+	0.35	(0.32,0.36]	chrX	1016140	4	SS5_PROX	SS5_PROX:INTRON	PAK3	ENSG00000077264.16	ENST00000425146.5:ENST00000446737.5:ENST00000372007.10:ENST00000519681.5:ENST00000372010.5:ENST00000518291.5:ENST00000429193.5:ENST00000262836.6:ENST00000360648.8:ENST00000417227.5:ENST00000487802.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	53	2	4.92153	5.109624999999999	5.29772	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	631844	631940	24	0	+	0.40625	(0.392,0.424]	chr1	3	9	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	20	149	2	4.77258	5.109355	5.44613	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	34612531	34612631	7802787	0	-	0.47	(0.459,0.49]	chr14	718290	24	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr17	1477004	1477099	8837293	0	-	0.484211	(0.459,0.49]	chr17	843308	1	SS5_PROX	SS5_PROX:INTRON	MYO1C	ENSG00000197879.17	ENST00000648651.1:ENST00000575158.5:ENST00000648446.1:ENST00000361007.7:ENST00000646049.1:ENST00000570984.7:ENST00000545534.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr19	38952786	38952886	9494518	0	-	0.48	(0.459,0.49]	chr19	934937	2	INTRON	INTRON	FBXO17	ENSG00000269190.6	ENST00000292852.9:ENST00000596025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr2	15528044	15528144	1385875	0	-	0.46	(0.459,0.49]	chr2	143505	163	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr2	171320998	171321097	1611128	0	-	0.474747	(0.459,0.49]	chr2	166703	54	UTR3	UTR3:EXON_MRNA	METTL8	ENSG00000123600.21	ENST00000612742.5:ENST00000375258.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr2	235683132	235683232	1348045	0	+	0.47	(0.459,0.49]	chr2	139206	117	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr6	125906086	125906185	3871856	0	+	0.464646	(0.459,0.49]	chr6	354061	57	INTRON	INTRON	NCOA7	ENSG00000111912.20	ENST00000368357.7:ENST00000392477.7:ENST00000229634.13:ENST00000433571.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr6	165578733	165578833	4266517	0	-	0.47	(0.459,0.49]	chr6	386849	18	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000648884.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr9	19083343	19083443	5587114	0	-	0.48	(0.459,0.49]	chr9	500827	3	SS3_PROX	SS3_PROX:INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chrX	77771464	77771564	10385010	0	-	0.49	(0.459,0.49]	chrX	1030575	539	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.97981	5.107419999999999	5.23503	3.36273e-5	5.25256e-6	0.00159406	3.11102e-4
chr11	66654269	66654369	6421778	0	+	0.46	(0.459,0.49]	chr11	578758	20	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	5.04785	5.107285	5.16672	2.39418e-5	7.74288e-6	0.00119556	4.39068e-4
chr17	18094741	18094830	8666239	0	+	0.47191	(0.459,0.49]	chr17	819534	4	INTRON	INTRON	DRG2	ENSG00000108591.10	ENST00000577771.5:ENST00000496428.6:ENST00000395726.8:ENST00000578173.5:ENST00000582314.5:ENST00000225729.8:ENST00000579601.5:ENST00000578767.5:ENST00000582419.5:ENST00000580055.5:ENST00000467099.6:ENST00000579224.5:ENST00000577450.5:ENST00000584212.1:ENST00000580929.5:ENST00000583162.1:ENST00000583355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	5.04785	5.107285	5.16672	2.39418e-5	7.74288e-6	0.00119556	4.39068e-4
chr8	120444747	120444847	5262623	0	-	0.48	(0.459,0.49]	chr8	470249	4	SS5_PROX	SS5_PROX:INTRON	MRPL13	ENSG00000172172.8	ENST00000518696.5:ENST00000306185.8:ENST00000518918.1:ENST00000520677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	4.73219	5.106395	5.4806	4.11395e-7	3.0068e-8	3.09732e-5	2.8316e-6
chr22	39505814	39505911	9945399	0	+	0.56701	(0.526,0.57]	chr22	989287	9	INTRON	INTRON	MIEF1	ENSG00000100335.15	ENST00000402881.5:ENST00000325301.7:ENST00000433117.6:ENST00000404569.5:ENST00000434364.5:ENST00000428069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	4.8606	5.104	5.3474	1.05485e-6	1.86203e-9	7.33447e-5	2.12626e-7
chr6	4794304	4794404	3692320	0	+	0.53	(0.526,0.57]	chr6	336532	171	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	4.8606	5.104	5.3474	1.05485e-6	1.86203e-9	7.33447e-5	2.12626e-7
chrX	24169122	24169222	10104573	0	+	0.32	[0,0.32]	chrX	1007440	69	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	4.27127	5.103845	5.93642	1.03327e-6	3.87502e-8	7.23599e-5	3.55241e-6
chr10	119587354	119587453	6273226	0	-	0.50505	(0.49,0.526]	chr10	561324	44	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000412524.5:ENST00000369086.1:ENST00000462373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.64127	5.10272	5.56417	2.4929e-4	1.40942e-7	0.0089494	1.1686e-5
chr22	23746317	23746417	9996792	0	-	0.5	(0.49,0.526]	chr22	995765	7	INTRON	INTRON	ZNF70	ENSG00000187792.5	ENST00000341976.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.64127	5.10272	5.56417	2.4929e-4	1.40942e-7	0.0089494	1.1686e-5
chr22	36024940	36025040	10028575	0	-	0.5	(0.49,0.526]	chr22	998807	634	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.64127	5.10272	5.56417	2.4929e-4	1.40942e-7	0.0089494	1.1686e-5
chr3	49010620	49010720	1865830	0	+	0.5	(0.49,0.526]	chr3	189282	12	INTRON	INTRON	WDR6	ENSG00000178252.19	ENST00000395474.7:ENST00000610967.4:ENST00000429900.6:ENST00000488572.6:ENST00000489684.2:ENST00000462064.5:ENST00000608424.6:ENST00000438660.5:ENST00000473238.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000627177.1:ENST00000448293.5:ENST00000472878.5:ENST00000419837.1:ENST00000461687.1:ENST00000489427.1:ENST00000491365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.64127	5.10272	5.56417	2.4929e-4	1.40942e-7	0.0089494	1.1686e-5
chr20	38551623	38551723	9649490	0	+	0.38	(0.36,0.392]	chr20	952936	4	SS5_PROX	SS5_PROX:INTRON	RALGAPB	ENSG00000170471.15	ENST00000397042.7:ENST00000262879.11:ENST00000397040.5:ENST00000438490.2:ENST00000632792.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.57244	5.1001449999999995	5.62785	2.92322e-6	5.69775e-7	1.80583e-4	4.16055e-5
chr5	53561658	53561757	3174320	0	+	0.363636	(0.36,0.392]	chr5	293212	5	INTRON	INTRON	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.57244	5.1001449999999995	5.62785	2.92322e-6	5.69775e-7	1.80583e-4	4.16055e-5
chr10	110569313	110569413	5975520	0	+	0.48	(0.459,0.49]	chr10	536987	3	SS5_PROX	SS5_PROX:INTRON	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000691297.1:ENST00000361804.5:ENST00000691527.1:ENST00000692792.1:ENST00000462899.1:ENST00000687823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.51255	5.098265	5.68398	6.3564e-4	5.57196e-8	0.0193151	4.89622e-6
chr1	156771028	156771128	310181	0	+	0.53	(0.526,0.57]	chr1	34415	24	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000473387.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	4.88087	5.097525	5.31418	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	30720978	30721078	8370308	0	+	0.49	(0.459,0.49]	chr16	781538	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.57976	5.09746	5.61516	4.98571e-4	9.49302e-8	0.0160179	8.06088e-6
chr4	39604770	39604870	2876646	0	-	0.46	(0.459,0.49]	chr4	271217	3	SS5_PROX	SS5_PROX:INTRON	SMIM14	ENSG00000163683.12	ENST00000295958.10:ENST00000511809.5:ENST00000510628.1:ENST00000507613.5:ENST00000505729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.57976	5.09746	5.61516	4.98571e-4	9.49302e-8	0.0160179	8.06088e-6
chr17	77296894	77296994	8806096	0	+	0.33	(0.32,0.36]	chr17	838928	16	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.49493	5.09696	5.69899	1.01106e-5	3.81705e-7	5.51435e-4	2.90385e-5
chr5	108877204	108877304	3269052	0	+	0.36	(0.32,0.36]	chr5	301214	46	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.49493	5.09696	5.69899	1.01106e-5	3.81705e-7	5.51435e-4	2.90385e-5
chr3	179210185	179210261	2114061	0	+	0.381579	(0.36,0.392]	chr3	206800	1	CDS	CDS:EXON_MRNA	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1:ENST00000674534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	4.4918	5.09627	5.70074	4.36875e-6	3.77982e-7	2.58808e-4	2.84782e-5
chr11	46620443	46620541	6390556	0	+	0.5	(0.49,0.526]	chr11	572575	17	INTRON	INTRON	ATG13	ENSG00000175224.17	ENST00000580238.5:ENST00000579280.1:ENST00000581416.5:ENST00000529655.5:ENST00000526715.5:ENST00000533325.5:ENST00000683050.1:ENST00000583249.5:ENST00000581438.5:ENST00000526508.5:ENST00000530500.5:ENST00000577256.5:ENST00000578626.5:ENST00000524625.5:ENST00000530942.1:ENST00000534610.5:ENST00000582547.5:ENST00000359513.8:ENST00000528494.5:ENST00000395549.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.38975	5.095115	5.80048	9.92102e-4	8.0778e-9	0.0276375	8.33659e-7
chr4	41257318	41257415	2610151	0	+	0.783505	(0.629,1]	chr4	250015	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	4.12808	5.0951	6.06212	1.10056e-6	3.45149e-11	7.55889e-5	4.93404e-9
chr8	144619793	144619893	5310626	0	-	0.61	(0.57,0.629]	chr8	475266	137	INTRON	INTRON	ARHGAP39	ENSG00000147799.12	ENST00000377307.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.53486	5.093895	5.65293	3.95206e-4	2.31977e-8	0.0135724	2.19827e-6
chr3	43032266	43032329	1852087	0	+	0.619048	(0.57,0.629]	chr3	187423	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GASK1A	ENSG00000144649.10	ENST00000693686.1:ENST00000273146.6:ENST00000488863.5:ENST00000688935.1:ENST00000430121.3:ENST00000434206.1:ENST00000691621.1:ENST00000492161.1:ENST00000687218.1:ENST00000690717.1:ENST00000686436.1:ENST00000692251.1:ENST00000688831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.68132	5.09236	5.5034	1.50304e-4	1.59473e-7	0.00577248	1.31413e-5
chr7	76040189	76040289	4737526	0	-	0.6	(0.57,0.629]	chr7	425366	93	INTRON	INTRON	STYXL1	ENSG00000127952.17	ENST00000248600.5:ENST00000360591.7:ENST00000359697.8:ENST00000340062.9:ENST00000431581.5:ENST00000451157.1:ENST00000474328.5:ENST00000460184.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.68132	5.09236	5.5034	1.50304e-4	1.59473e-7	0.00577248	1.31413e-5
chrX	74240639	74240738	10376766	0	-	0.353535	(0.32,0.36]	chrX	1030058	77	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	4.38184	5.092025	5.80221	1.66191e-5	2.13657e-7	8.55383e-4	1.69216e-5
chr2	48442863	48442962	1025936	0	+	0.393939	(0.392,0.424]	chr2	110335	10	INTRON	INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5:ENST00000421486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	4.21741	5.092015	5.96662	0.00496616	6.28695e-9	0.0964485	6.5739e-7
chr9	131598	131698	5533379	0	-	0.41	(0.392,0.424]	chr9	498516	78	INTRON	INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000475990.5:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000462513.5:ENST00000616944.4:ENST00000613355.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.21741	5.092015	5.96662	0.00496616	6.28695e-9	0.0964485	6.5739e-7
chr3	57783034	57783134	1895960	0	+	0.39	(0.36,0.392]	chr3	192872	248	INTRON	INTRON	SLMAP	ENSG00000163681.16	ENST00000295951.7:ENST00000659926.1:ENST00000659705.1:ENST00000671191.1:ENST00000667800.1:ENST00000655012.1:ENST00000428312.6:ENST00000664084.1:ENST00000657480.1:ENST00000467901.1:ENST00000295952.7:ENST00000383718.7:ENST00000449503.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	4.38376	5.089145	5.79453	1.64803e-5	9.49031e-8	8.48507e-4	8.06088e-6
chr1	35185280	35185374	568088	0	-	0.393617	(0.392,0.424]	chr1	63784	3	INTRON	INTRON	SFPQ	ENSG00000116560.12	ENST00000470472.5:ENST00000460428.5:ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	4.94119	5.08883	5.23647	1.23024e-8	2.4131e-10	1.23695e-6	3.08506e-8
chr1	90983169	90983269	685500	0	-	0.36	(0.32,0.36]	chr1	74554	4	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr1	173978920	173979020	807308	0	-	0.33	(0.32,0.36]	chr1	89961	3	SS3_PROX	SS3_PROX:INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr1	183475096	183475195	375198	0	+	0.333333	(0.32,0.36]	chr1	40733	8	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr1	198243692	198243791	390460	0	+	0.323232	(0.32,0.36]	chr1	41984	107	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5:ENST00000544035.5:ENST00000417895.1:ENST00000391974.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr12	120889591	120889691	7302268	0	-	0.35	(0.32,0.36]	chr12	673987	541	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr13	51747429	51747528	7386801	0	+	0.343434	(0.32,0.36]	chr13	682519	79	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7:ENST00000460145.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr2	46707544	46707644	1018534	0	+	0.36	(0.32,0.36]	chr2	109833	77	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr2	46745224	46745324	1018911	0	+	0.34	(0.32,0.36]	chr2	109833	454	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr3	122434784	122434883	2406411	0	-	0.353535	(0.32,0.36]	chr3	230704	6	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5:ENST00000485027.5:ENST00000494339.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr4	15665611	15665710	2842229	0	-	0.333333	(0.32,0.36]	chr4	269265	53	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000510802.5:ENST00000507899.1:ENST00000515679.1:ENST00000514541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	5.03749	5.08853	5.13957	9.65678e-5	6.71414e-5	0.00399919	0.00291649
chr10	46022130	46022230	6122604	0	-	0.53	(0.526,0.57]	chr10	548463	27	INTRON	INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.63387	5.088195	5.54252	2.57391e-4	1.66713e-7	0.00911512	1.36401e-5
chr16	223744	223844	8486479	0	-	0.57	(0.526,0.57]	chr16	794155	26	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5:ENST00000469109.1:ENST00000428363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.69362	5.08765	5.48168	1.98837e-4	2.6732e-7	0.00746609	2.09843e-5
chr6	148815232	148815332	3921092	0	+	0.45	(0.424,0.459]	chr6	357405	672	INTRON	INTRON	UST	ENSG00000111962.8	ENST00000367463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.48802	5.08726	5.6865	0.00121831	9.64047e-8	0.0326347	8.13052e-6
chr15	77382318	77382418	8251118	0	-	0.38	(0.36,0.392]	chr15	765880	167	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	4.65848	5.085265	5.51205	2.39077e-6	8.06613e-7	1.5204e-4	5.78931e-5
chr11	19881715	19881814	6343041	0	+	0.434343	(0.424,0.459]	chr11	568872	12	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71424	5.084875	5.45551	3.07139e-4	1.50668e-6	0.0105767	9.96778e-5
chr13	30304219	30304318	7477752	0	-	0.454545	(0.424,0.459]	chr13	688894	201	INTRON	INTRON	KATNAL1	ENSG00000102781.14	ENST00000380615.8:ENST00000380617.7:ENST00000414289.5:ENST00000441394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71424	5.084875	5.45551	3.07139e-4	1.50668e-6	0.0105767	9.96778e-5
chr3	11580189	11580289	2173018	0	-	0.44	(0.424,0.459]	chr3	212313	114	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000413604.5:ENST00000451674.6:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000458499.5:ENST00000417206.6:ENST00000417466.5:ENST00000424709.5:ENST00000419541.4:ENST00000437722.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71424	5.084875	5.45551	3.07139e-4	1.50668e-6	0.0105767	9.96778e-5
chr8	128004801	128004901	5090077	0	+	0.44	(0.424,0.459]	chr8	455351	56	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000660438.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000670204.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.71424	5.084875	5.45551	3.07139e-4	1.50668e-6	0.0105767	9.96778e-5
chr9	77894562	77894662	5637499	0	-	0.45	(0.424,0.459]	chr9	505001	784	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71424	5.084875	5.45551	3.07139e-4	1.50668e-6	0.0105767	9.96778e-5
chr6	87251360	87251459	3830175	0	+	0.474747	(0.459,0.49]	chr6	350942	15	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.21222	5.084490000000001	5.95676	9.25181e-6	1.17119e-9	5.14007e-4	1.35849e-7
chr1	51788075	51788170	144869	0	+	0.389474	(0.36,0.392]	chr1	17751	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr12	12488283	12488383	7090018	0	-	0.38	(0.36,0.392]	chr12	652065	7	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000545864.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr12	46687344	46687444	6895860	0	+	0.37	(0.36,0.392]	chr12	628526	349	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr2	182143837	182143937	1633639	0	-	0.38	(0.36,0.392]	chr2	168490	4	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr20	8835042	8835142	9570725	0	+	0.38	(0.36,0.392]	chr20	947300	325	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000378641.7:ENST00000338037.11:ENST00000617005.4:ENST00000612075.4:ENST00000487210.5:ENST00000635929.1:ENST00000637935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr7	114930004	114930103	4516557	0	+	0.363636	(0.36,0.392]	chr7	406844	65	INTRON	INTRON	MDFIC	ENSG00000135272.13	ENST00000393486.6:ENST00000431629.5:ENST00000427207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.65673	5.08439	5.51205	7.48315e-4	2.39077e-6	0.0220209	1.5204e-4
chr1	53041721	53041820	149879	0	+	0.444444	(0.424,0.459]	chr1	18183	23	INTRON	INTRON	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000478274.6:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr1	61952220	61952304	170886	0	+	0.440476	(0.424,0.459]	chr1	19479	3	UTR5	UTR5:EXON_MRNA:INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5:ENST00000494842.2:ENST00000490547.2:ENST00000646453.1:ENST00000635137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr10	50395088	50395188	6130434	0	-	0.43	(0.424,0.459]	chr10	549158	504	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr11	19881814	19881913	6343042	0	+	0.434343	(0.424,0.459]	chr11	568872	13	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr15	75889441	75889539	8045168	0	+	0.44898	(0.424,0.459]	chr15	743338	57	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr2	33139759	33139859	985402	0	+	0.44	(0.424,0.459]	chr2	107468	44	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr20	58893094	58893190	9683508	0	+	0.4375	(0.424,0.459]	chr20	956582	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.79703	5.08429	5.37155	2.28148e-4	2.42251e-6	0.00827964	1.53938e-4
chr16	53952083	53952183	8390380	0	+	0.38	(0.36,0.392]	chr16	784218	143	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.72821	5.083785	5.43936	6.09158e-4	3.42448e-6	0.0188826	2.10826e-4
chr2	134934645	134934745	1151224	0	+	0.37	(0.36,0.392]	chr2	122968	144	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000475094.1:ENST00000417175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.72821	5.083785	5.43936	6.09158e-4	3.42448e-6	0.0188826	2.10826e-4
chr2	156543620	156543720	1185486	0	+	0.38	(0.36,0.392]	chr2	124881	298	INTRON	INTRON	GPD2	ENSG00000115159.16	ENST00000310454.10:ENST00000438166.7:ENST00000540309.5:ENST00000409861.5:ENST00000409125.8:ENST00000409674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.72821	5.083785	5.43936	6.09158e-4	3.42448e-6	0.0188826	2.10826e-4
chr9	5898736	5898836	5547392	0	-	0.44	(0.424,0.459]	chr9	499341	167	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000436015.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	46	2	4.71718	5.083069999999999	5.44896	3.1417e-11	1e-12	4.5174e-9	1.72912e-10
chr15	63721984	63722083	8210540	0	-	0.464646	(0.459,0.49]	chr15	761365	27	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.76501	5.0828500000000005	5.40069	1.46149e-4	1.15324e-6	0.00564049	7.95154e-5
chr17	30874293	30874391	8692583	0	+	0.479592	(0.459,0.49]	chr17	823024	43	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	15	2	4.76501	5.0828500000000005	5.40069	1.46149e-4	1.15324e-6	0.00564049	7.95154e-5
chr8	125261860	125261960	5086705	0	+	0.46	(0.459,0.49]	chr8	455136	792	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.76501	5.0828500000000005	5.40069	1.46149e-4	1.15324e-6	0.00564049	7.95154e-5
chr1	9818446	9818546	514763	0	-	0.48	(0.459,0.49]	chr1	55284	447	INTRON	INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.83271	5.082445	5.33218	1.09213e-4	1.78412e-6	0.00442392	1.1709e-4
chr12	57427327	57427427	7182193	0	-	0.46	(0.459,0.49]	chr12	663024	312	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.83271	5.082445	5.33218	1.09213e-4	1.78412e-6	0.00442392	1.1709e-4
chr14	92120711	92120779	7902233	0	-	0.470588	(0.459,0.49]	chr14	728156	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB1	ENSG00000183648.11	ENST00000553514.5:ENST00000329559.8:ENST00000605997.6:ENST00000617122.1:ENST00000555441.5:ENST00000556555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.83271	5.082445	5.33218	1.09213e-4	1.78412e-6	0.00442392	1.1709e-4
chr15	49013708	49013806	8156481	0	-	0.469388	(0.459,0.49]	chr15	756337	5	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.83271	5.082445	5.33218	1.09213e-4	1.78412e-6	0.00442392	1.1709e-4
chr9	87686550	87686644	5419509	0	+	0.553191	(0.526,0.57]	chr9	483899	1	CDS	CDS:UTR3:EXON_MRNA	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000408954.8:ENST00000622514.4:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.38241	5.080585	5.77876	0.00101891	9.84906e-9	0.0276375	1.00136e-6
chr20	6012290	6012388	9562670	0	+	0.561224	(0.526,0.57]	chr20	946986	20	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.44169	5.079705000000001	5.71772	8.21639e-4	1.72001e-8	0.0238903	1.66972e-6
chr21	46111576	46111591	9834565	0	+	0.533333	(0.526,0.57]	chr21	975722	1	CDS	CDS:EXON_MRNA	COL6A2	ENSG00000142173.16	ENST00000300527.9:ENST00000310645.9:ENST00000436769.5:ENST00000397763.5:ENST00000409416.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.44169	5.079705000000001	5.71772	8.21639e-4	1.72001e-8	0.0238903	1.66972e-6
chr17	30135923	30136023	8689049	0	+	0.57	(0.526,0.57]	chr17	822554	78	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	4.38014	5.07945	5.77876	6.74826e-7	9.84906e-9	4.89646e-5	1.00136e-6
chr14	105419918	105420018	7769534	0	+	0.83	(0.629,1]	chr14	714044	2	UTR5	UTR5:EXON_MRNA	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	4.15411	5.079420000000001	6.00473	6.63999e-10	8.76691e-11	7.98758e-8	1.18784e-8
chr1	21107834	21107934	537073	0	-	0.5	(0.49,0.526]	chr1	59079	183	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	5.04178	5.0789550000000006	5.11613	1.57703e-5	1.03252e-5	8.20905e-4	5.57702e-4
chr17	29405607	29405707	8686984	0	+	0.5	(0.49,0.526]	chr17	822297	142	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	5.04178	5.0789550000000006	5.11613	1.57703e-5	1.03252e-5	8.20905e-4	5.57702e-4
chr17	29425484	29425583	8687183	0	+	0.50505	(0.49,0.526]	chr17	822297	341	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	5.04178	5.0789550000000006	5.11613	1.57703e-5	1.03252e-5	8.20905e-4	5.57702e-4
chr2	204560885	204560985	1274685	0	+	0.52	(0.49,0.526]	chr2	132839	28	INTRON	INTRON	PARD3B	ENSG00000116117.19	ENST00000406610.7:ENST00000415947.1:ENST00000349953.7:ENST00000351153.5:ENST00000358768.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	5.04178	5.0789550000000006	5.11613	1.57703e-5	1.03252e-5	8.20905e-4	5.57702e-4
chr4	76955420	76955520	2653067	0	+	0.51	(0.49,0.526]	chr4	253483	51	INTRON	INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000504637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	4.1504200000000004	5.076945	6.00347	4.64321e-10	6.85753e-11	5.72685e-8	9.44151e-9
chr11	10160761	10160861	6561103	0	-	0.4	(0.392,0.424]	chr11	596538	1163	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	4.81758	5.076215	5.33485	6.29448e-8	4.44158e-11	5.585e-6	6.22225e-9
chr5	177146800	177146900	3399882	0	+	0.44	(0.424,0.459]	chr5	312056	95	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000638627.3:ENST00000644863.2:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	4.61423	5.075915	5.5376	4.85762e-7	4.83052e-7	3.605e-5	3.58077e-5
chr8	98147937	98148031	5039077	0	+	0.43617	(0.424,0.459]	chr8	452083	9	INTRON	INTRON	POP1	ENSG00000104356.11	ENST00000401707.7:ENST00000349693.3	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.61423	5.075915	5.5376	4.85762e-7	4.83052e-7	3.605e-5	3.58077e-5
chr15	52203765	52203865	8171012	0	-	0.44	(0.424,0.459]	chr15	757761	69	INTRON	INTRON	MYO5C	ENSG00000128833.13	ENST00000261839.12:ENST00000560809.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	4.46516	5.07583	5.6865	2.35249e-6	9.64047e-8	1.51159e-4	8.13052e-6
chr1	50734165	50734265	612291	0	-	0.36	(0.32,0.36]	chr1	68258	279	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	5.01567	5.075085	5.1345	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	47787011	47787111	5164475	0	-	0.32	[0,0.32]	chr8	462741	13	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	5.04231	5.07473	5.10715	7.53496e-5	3.40623e-8	0.00322158	3.14246e-6
chr5	102983697	102983796	3266085	0	+	0.323232	(0.32,0.36]	chr5	300855	89	INTRON	INTRON	PAM	ENSG00000145730.21	ENST00000510208.2:ENST00000304400.12:ENST00000684529.1:ENST00000438793.8:ENST00000455264.7:ENST00000682972.1:ENST00000682882.1:ENST00000682024.1:ENST00000348126.7:ENST00000684379.1:ENST00000684043.1:ENST00000682407.1:ENST00000345721.6:ENST00000346918.7:ENST00000379799.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	4.9312	5.07412	5.21704	1.74992e-11	1e-12	2.60849e-9	1.72912e-10
chr12	4661541	4661639	6809057	0	+	0.418367	(0.392,0.424]	chr12	621446	20	INTRON	INTRON	NDUFA9	ENSG00000139180.11	ENST00000539573.5:ENST00000266544.10:ENST00000396655.6:ENST00000535726.5:ENST00000544675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	5.03825	5.0741	5.10995	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	131420180	131420280	4549976	0	+	0.34	(0.32,0.36]	chr7	409261	51	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	3.87259	5.0736300000000005	6.27467	3.96495e-5	2.42526e-10	0.00188516	3.09612e-8
chr10	17668201	17668301	5799823	0	+	0.45	(0.424,0.459]	chr10	522279	73	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8:ENST00000377500.1:ENST00000445846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.80014	5.0735600000000005	6.34698	3.54639e-4	1.28346e-11	0.0120332	1.9463e-9
chr8	25244656	25244756	4950121	0	+	0.49	(0.459,0.49]	chr8	443323	5	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	4.4523	5.072755	5.69321	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	89267499	89267598	8076023	0	+	0.373737	(0.36,0.392]	chr15	746540	25	INTRON	INTRON	FANCI	ENSG00000140525.20	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000696717.1:ENST00000676003.1:ENST00000696718.1:ENST00000447611.6:ENST00000696719.1:ENST00000565522.5:ENST00000570225.5:ENST00000561894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	34	2	4.66677	5.071955	5.47714	5.01221e-12	3.30891e-12	7.97613e-10	5.37234e-10
chr1	175962402	175962502	808431	0	-	0.35	(0.32,0.36]	chr1	90070	148	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.27744	5.071635000000001	5.86583	6.03386e-5	6.04906e-8	0.00268144	5.40424e-6
chr11	111663400	111663500	6492477	0	+	0.57	(0.526,0.57]	chr11	586972	426	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.2573	5.070545	5.88379	2.46218e-6	2.39626e-9	1.55994e-4	2.67554e-7
chrX	73831161	73831258	10373521	0	-	0.494845	(0.49,0.526]	chrX	1029956	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	9	100	2	4.18951	5.07031	5.95111	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73826893	73826992	10373476	0	-	0.50505	(0.49,0.526]	chrX	1029941	64	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	9	113	2	5.04445	5.069795	5.09514	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	47408598	47408698	9518521	0	-	0.5	(0.49,0.526]	chr19	939396	1	SS5_PROX	SS5_PROX:INTRON	MEIS3	ENSG00000105419.18	ENST00000558555.6:ENST00000331559.9:ENST00000441740.6:ENST00000561204.5:ENST00000561096.5:ENST00000560245.5:ENST00000561293.5:ENST00000560253.1:ENST00000559524.5:ENST00000607695.1:ENST00000559338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.85538	5.0684000000000005	5.28142	6.26806e-5	2.46593e-6	0.00277665	1.54892e-4
chr17	29753250	29753350	8904489	0	-	0.5	(0.49,0.526]	chr17	853473	498	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.92941	5.06812	5.20683	4.32628e-5	3.9703e-6	0.00200309	2.39291e-4
chr7	5778902	5778999	4619361	0	-	0.525773	(0.49,0.526]	chr7	416060	9	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5:ENST00000476345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.92941	5.06812	5.20683	4.32628e-5	3.9703e-6	0.00200309	2.39291e-4
chr18	59155687	59155749	9134631	0	+	0.322581	(0.32,0.36]	chr18	881230	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEC11C	ENSG00000166562.9	ENST00000509791.7:ENST00000299714.7:ENST00000587834.6:ENST00000588875.2:ENST00000591406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.16471	5.066985000000001	5.96926	9.22891e-5	3.15048e-8	0.00388567	2.93512e-6
chr8	123802276	123802376	5083805	0	+	0.33	(0.32,0.36]	chr8	454877	20	INTRON	INTRON	FAM91A1	ENSG00000176853.16	ENST00000334705.12:ENST00000521166.5:ENST00000519721.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.16471	5.066985000000001	5.96926	9.22891e-5	3.15048e-8	0.00388567	2.93512e-6
chr12	118268554	118268654	7295392	0	-	0.36	(0.32,0.36]	chr12	672969	14	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.73736	5.06656	5.39576	9.86331e-6	5.18532e-7	5.39872e-4	3.83329e-5
chr12	989408	989508	7065474	0	-	0.33	(0.32,0.36]	chr12	648414	2	SS5_PROX	SS5_PROX:INTRON	RAD52:ENSG00000250132	ENSG00000002016.18:ENSG00000250132.6	ENST00000430095.6:ENST00000503602.6:ENST00000545629.5:ENST00000539259.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	11	2	4.32952	5.065865	5.80221	0.00388505	2.13657e-7	0.0816719	1.69216e-5
chr7	66219903	66220003	4398973	0	+	0.34	(0.32,0.36]	chr7	396466	96	INTRON	INTRON	TPST1	ENSG00000169902.15	ENST00000442120.1:ENST00000304842.6:ENST00000480281.5:ENST00000649664.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.32952	5.065865	5.80221	0.00388505	2.13657e-7	0.0816719	1.69216e-5
chr2	178604327	178604427	1224827	0	+	0.26	[0,0.32]	chr2	128293	2	SS3_PROX	SS3_PROX:INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000589907.5:ENST00000610290.4:ENST00000589234.5:ENST00000589830.1:ENST00000671355.1:ENST00000589487.5	lncRNA	lncRNA	lncRNA	lncRNA	3	31	2	4.45912	5.065670000000001	5.67222	1.18389e-5	1e-12	6.49715e-4	1.72912e-10
chr9	130798853	130798953	5515917	0	+	0.6	(0.57,0.629]	chr9	495051	840	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	5.03134	5.065135	5.09893	1.22122e-5	7.91825e-6	6.58806e-4	4.54299e-4
chr19	49623184	49623280	9375764	0	+	0.416667	(0.392,0.424]	chr19	913466	12	INTRON	INTRON	PRR12	ENSG00000126464.15	ENST00000418929.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.54701	5.065075	5.58314	0.00102713	7.33041e-7	0.0276375	5.19799e-5
chr2	144492617	144492717	1578064	0	-	0.4	(0.392,0.424]	chr2	163317	104	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.54701	5.065075	5.58314	0.00102713	7.33041e-7	0.0276375	5.19799e-5
chr6	169539928	169540028	4278475	0	-	0.41	(0.392,0.424]	chr6	387493	811	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.54701	5.065075	5.58314	0.00102713	7.33041e-7	0.0276375	5.19799e-5
chr11	93768040	93768139	6709621	0	-	0.515152	(0.49,0.526]	chr11	612945	248	INTRON	INTRON	TAF1D	ENSG00000166012.17	ENST00000527690.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	4.69672	5.064674999999999	5.43263	2.25376e-8	1e-12	2.16877e-6	1.73382e-10
chr1	41025749	41025848	122007	0	+	0.555556	(0.526,0.57]	chr1	14342	70	INTRON	INTRON	SLFNL1-AS1	ENSG00000281207.1	ENST00000626479.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	5.03431	5.06448	5.09465	1.64566e-5	1.16684e-5	8.48927e-4	6.16746e-4
chr17	5112796	5112885	8635990	0	+	0.52809	(0.526,0.57]	chr17	815825	3	INTRON	INTRON	ZNF232-AS1	ENSG00000234327.9	ENST00000571138.5:ENST00000413077.2:ENST00000665679.2:ENST00000570712.2	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	5.03431	5.06448	5.09465	1.64566e-5	1.16684e-5	8.48927e-4	6.16746e-4
chr11	48067906	48068006	6395868	0	+	0.41	(0.392,0.424]	chr11	573271	212	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.61293	5.06437	5.51581	8.49057e-4	1.07176e-6	0.0240064	7.36955e-5
chr4	105962609	105962708	2704740	0	+	0.424242	(0.392,0.424]	chr4	257348	31	INTRON	INTRON	NPNT	ENSG00000168743.13	ENST00000453617.6:ENST00000514622.5:ENST00000427316.6:ENST00000305572.12:ENST00000379987.7:ENST00000506666.5:ENST00000503451.5:ENST00000514837.1:ENST00000514632.1:ENST00000504787.1:ENST00000505917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.61293	5.06437	5.51581	8.49057e-4	1.07176e-6	0.0240064	7.36955e-5
chrX	10117789	10117889	10082892	0	+	0.4	(0.392,0.424]	chrX	1005496	1	SS5_PROX	SS5_PROX:INTRON	WWC3	ENSG00000047644.20	ENST00000380861.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.03703	5.06363	6.09023	1.48653e-4	1.13607e-9	0.00578975	1.32549e-7
chr18	8369490	8369589	9052686	0	+	0.474747	(0.459,0.49]	chr18	874866	256	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8:ENST00000577827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.20634	5.0634999999999994	5.92066	0.00276656	2.70029e-9	0.0641652	2.98805e-7
chr5	59354458	59354558	3475789	0	-	0.38	(0.36,0.392]	chr5	319239	785	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.3312	5.062865	5.79453	0.00387074	9.49031e-8	0.078873	8.06088e-6
chr12	51082906	51083006	7165119	0	-	0.56	(0.526,0.57]	chr12	659327	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	5.0004	5.06215	5.1239	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	20584360	20584460	5590252	0	-	0.42	(0.392,0.424]	chr9	501027	1272	INTRON	INTRON	MLLT3	ENSG00000171843.17	ENST00000380338.9:ENST00000630269.2:ENST00000475957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	4.44207	5.06215	5.68223	5.58952e-6	1.931e-7	3.2822e-4	1.56398e-5
chr1	213101957	213102057	427938	0	+	0.34	(0.32,0.36]	chr1	46148	238	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr11	28338801	28338901	6358183	0	+	0.36	(0.32,0.36]	chr11	569690	54	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000532947.2:ENST00000634627.1:ENST00000634973.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr12	49629645	49629745	6905406	0	+	0.33	(0.32,0.36]	chr12	629372	51	INTRON	INTRON	PRPF40B	ENSG00000110844.14	ENST00000551063.5:ENST00000551418.5:ENST00000548825.7:ENST00000548436.5:ENST00000261897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr12	122483962	122484062	7308588	0	-	0.34	(0.32,0.36]	chr12	674893	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000544054.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr2	108574791	108574891	1114061	0	+	0.34	(0.32,0.36]	chr2	119435	36	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr9	5012677	5012776	5325001	0	+	0.353535	(0.32,0.36]	chr9	476600	263	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000636127.1:ENST00000476574.5:ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.7265	5.06113	5.39576	6.12159e-4	9.86331e-6	0.0189985	5.39872e-4
chr12	88168753	88168851	6986448	0	+	0.326531	(0.32,0.36]	chr12	638069	18	INTRON	INTRON	TMTC3	ENSG00000139324.12	ENST00000547034.5:ENST00000266712.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.82783	5.060505	5.29318	4.57616e-4	1.5251e-5	0.0150584	8.01855e-4
chr17	40230624	40230724	8714291	0	+	0.36	(0.32,0.36]	chr17	826489	97	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.82783	5.060505	5.29318	4.57616e-4	1.5251e-5	0.0150584	8.01855e-4
chr3	54859951	54860051	1891872	0	+	0.45	(0.424,0.459]	chr3	192442	131	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	4.74933	5.06044	5.37155	2.42251e-6	9.96009e-8	1.53938e-4	8.4812e-6
chr11	10115582	10115682	6560651	0	-	0.32	[0,0.32]	chr11	596538	711	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	4.81498	5.058475	5.30197	3.34826e-7	8.33093e-10	2.57546e-5	9.89956e-8
chr5	133090792	133090892	3319389	0	+	0.32	[0,0.32]	chr5	304564	2	SS3_PROX	SS3_PROX:INTRON	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	4.81498	5.058475	5.30197	3.34826e-7	8.33093e-10	2.57546e-5	9.89956e-8
chr1	52535322	52535422	619112	0	-	0.31	[0,0.32]	chr1	68994	2	SS3_PROX	SS3_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	54	2	4.95701	5.05757	5.15813	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	28378621	28378721	88407	0	+	0.39	(0.36,0.392]	chr1	9633	84	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	4.74503	5.056815	5.3686	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	79937788	79937887	9026230	0	-	0.626263	(0.57,0.629]	chr17	871572	56	UTR3	UTR3:EXON_MRNA	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000576768.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.93425	5.056585	5.17892	2.91369e-5	3.48382e-6	0.00141183	2.13641e-4
chr19	48197259	48197349	9371611	0	+	0.477778	(0.459,0.49]	chr19	912252	1	UTR3	UTR3:EXON_MRNA	ZSWIM9	ENSG00000185453.13	ENST00000614654.2:ENST00000328759.11	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.89251	5.05413	6.21575	1.23517e-6	2.91337e-11	8.43676e-5	4.19646e-9
chr15	64461138	64461238	8004541	0	+	0.71	(0.629,1]	chr15	740235	3	SS5_PROX	SS5_PROX:INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.02135	5.053965	5.08658	9.70346e-6	5.52146e-6	5.37523e-4	3.23814e-4
chr7	74485325	74485425	4429494	0	+	0.63	(0.629,1]	chr7	398064	308	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	5.02135	5.053965	5.08658	9.70346e-6	5.52146e-6	5.37523e-4	3.23814e-4
chr18	24026980	24027080	9083718	0	+	0.54	(0.526,0.57]	chr18	877876	68	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000578150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.84794	5.053905	5.25987	6.50622e-5	2.82947e-6	0.00284455	1.75466e-4
chr4	20726086	20726185	2584865	0	+	0.535354	(0.526,0.57]	chr4	248187	8	INTRON	INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000360916.9:ENST00000295290.12:ENST00000444671.6:ENST00000503585.6:ENST00000502374.5:ENST00000508952.5:ENST00000506702.5:ENST00000502938.5:ENST00000507634.5:ENST00000513459.5:ENST00000467997.6:ENST00000506648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.84794	5.053905	5.25987	6.50622e-5	2.82947e-6	0.00284455	1.75466e-4
chr5	146272572	146272671	3349709	0	+	0.555556	(0.526,0.57]	chr5	307555	5	INTRON	INTRON	RBM27	ENSG00000091009.8	ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.84794	5.053905	5.25987	6.50622e-5	2.82947e-6	0.00284455	1.75466e-4
chr1	24762407	24762507	77185	0	+	0.37	(0.36,0.392]	chr1	7922	164	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.83113	5.053775	6.27642	6.41601e-4	2.38946e-10	0.0193935	3.06702e-8
chr16	21860621	21860719	8531556	0	-	0.530612	(0.526,0.57]	chr16	801695	25	INTRON	INTRON	NPIPB4	ENSG00000185864.18	ENST00000539318.5:ENST00000536041.5:ENST00000543449.1:ENST00000541674.5:ENST00000544693.5:ENST00000538859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.90802	5.053675	5.19933	4.81512e-5	4.16513e-6	0.00220626	2.48371e-4
chr1	32379829	32379927	561845	0	-	0.459184	(0.424,0.459]	chr1	63081	6	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	4.74933	5.051685	5.35404	9.96009e-8	4.031e-12	8.4812e-6	6.4979e-10
chr20	35552674	35552774	9637201	0	+	0.46	(0.459,0.49]	chr20	951590	30	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000413587.5:ENST00000496172.5:ENST00000482338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	4.70263	5.05157	5.40051	9.94393e-12	1e-12	1.53617e-9	1.73382e-10
chr2	71381403	71381501	1070781	0	+	0.306122	[0,0.32]	chr2	113786	1	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	5.01144	5.05147	5.0915	8.1023e-12	3.57026e-12	1.25454e-9	5.76452e-10
chr6	5661310	5661410	3698424	0	+	0.37	(0.36,0.392]	chr6	336670	476	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.80788	5.0514	5.29492	1.51392e-5	1.47653e-7	7.85619e-4	1.22253e-5
chr1	155009066	155009165	305550	0	+	0.515152	(0.49,0.526]	chr1	33125	58	INTRON	INTRON	ZBTB7B	ENSG00000160685.14	ENST00000417934.6:ENST00000368426.3:ENST00000535420.6:ENST00000483226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	4.98426	5.04927	5.11428	1.6919e-11	1e-12	2.5444e-9	1.72912e-10
chr3	33856256	33856355	1825631	0	+	0.40404	(0.392,0.424]	chr3	184787	6	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5:ENST00000489869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	135	2	4.84944	5.049215	5.24899	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	109560880	109560980	1538764	0	-	0.4	(0.392,0.424]	chr2	159769	73	INTRON	INTRON	SEPTIN10	ENSG00000186522.15	ENST00000397712.7:ENST00000356688.8:ENST00000397714.6:ENST00000437928.5:ENST00000415095.5:ENST00000468616.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	5.04339	5.04921	5.05503	2.39312e-9	1e-12	2.68297e-7	1.72912e-10
chr7	111393414	111393514	4817640	0	-	0.37	(0.36,0.392]	chr7	431941	6	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	4.41364	5.048005	5.68237	2.01138e-10	1e-12	2.60682e-8	1.72912e-10
chr1	180483480	180483580	816023	0	-	0.41	(0.392,0.424]	chr1	90649	529	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	4.12889	5.047755	5.96662	1.01794e-6	6.28695e-9	7.14423e-5	6.5739e-7
chr3	123955349	123955448	2415483	0	-	0.424242	(0.392,0.424]	chr3	231565	29	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	4.60054	5.046495	5.49245	1.2389e-12	1e-12	2.11847e-10	1.72912e-10
chr5	14210148	14210248	3122374	0	+	0.39	(0.36,0.392]	chr5	289176	258	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	5.02429	5.045645	5.067	1.54207e-8	4.85192e-9	1.51982e-6	5.20289e-7
chr2	239070505	239070605	1729797	0	-	0.5	(0.49,0.526]	chr2	177837	15	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	4.47833	5.0451999999999995	5.61207	3.41555e-7	6.35974e-8	2.60631e-5	5.62451e-6
chr3	170093947	170094046	2489771	0	-	0.484848	(0.459,0.49]	chr3	238463	65	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.85489	5.04496	5.23503	5.25256e-6	3.39545e-9	3.11102e-4	3.71453e-7
chr1	100038915	100039015	243639	0	+	0.43	(0.424,0.459]	chr1	24528	2	INTRON	INTRON	MFSD14A	ENSG00000156875.14	ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	4.73523	5.0446349999999995	5.35404	5.26214e-11	4.031e-12	7.33664e-9	6.4979e-10
chr12	44252883	44252983	6886920	0	+	0.31	[0,0.32]	chr12	628155	411	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1:ENST00000553253.5:ENST00000550623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	4.72543	5.04431	5.36319	1.13263e-5	1.35488e-6	6.25152e-4	9.17479e-5
chr20	47214016	47214115	9753446	0	-	0.40404	(0.392,0.424]	chr20	966641	9	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.75797	5.042820000000001	5.32767	5.95442e-6	2.01084e-7	3.4453e-4	1.60882e-5
chr8	25299285	25299377	4950674	0	+	0.413043	(0.392,0.424]	chr8	443362	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000481100.5:ENST00000495236.1:ENST00000444569.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	4.75797	5.042820000000001	5.32767	5.95442e-6	2.01084e-7	3.4453e-4	1.60882e-5
chr3	180925062	180925162	2117922	0	+	0.6	(0.57,0.629]	chr3	207454	91	INTRON	INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5:ENST00000484042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.46827	5.042350000000001	5.61643	5.2773e-4	4.34385e-8	0.0167673	3.91431e-6
chr20	53031918	53032018	9673198	0	+	0.41	(0.392,0.424]	chr20	955958	582	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	45	325	2	4.90342	5.042294999999999	5.18117	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	128492848	128492948	4192939	0	-	0.48	(0.459,0.49]	chr6	381449	6	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	4.61869	5.04134	5.46399	1.26997e-7	1e-12	1.06312e-5	1.73382e-10
chr5	5426678	5426777	3112284	0	+	0.414141	(0.392,0.424]	chr5	288326	33	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9:ENST00000505464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	71	2	4.68448	5.041145	5.39781	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	63491158	63491258	6149176	0	-	0.28	[0,0.32]	chr10	550104	253	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	14	2	4.24175	5.040995	5.84024	6.90565e-5	1.72569e-7	0.00300464	1.40017e-5
chr17	49847598	49847693	8738244	0	+	0.347368	(0.32,0.36]	chr17	831030	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000204584	ENSG00000204584.1	ENST00000376609.1	lncRNA	lncRNA	lncRNA	lncRNA	4	34	2	3.94493	5.04089	6.13685	8.63412e-7	1e-12	6.08224e-5	1.73382e-10
chr3	65904579	65904677	2325166	0	-	0.510204	(0.49,0.526]	chr3	225650	14	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	4.59165	5.0404350000000004	5.48922	2.5213e-7	8.79223e-8	2.01203e-5	7.5628e-6
chr7	94647350	94647449	4778076	0	-	0.444444	(0.424,0.459]	chr7	427837	23	INTRON	INTRON	SGCE	ENSG00000127990.19	ENST00000648936.2:ENST00000647351.1:ENST00000447873.6:ENST00000643206.1:ENST00000644816.1:ENST00000642933.1:ENST00000646489.1:ENST00000445866.7:ENST00000437425.7:ENST00000645725.1:ENST00000646559.1:ENST00000644551.1:ENST00000642904.1:ENST00000646137.1:ENST00000643605.1:ENST00000646434.1:ENST00000644375.1:ENST00000643272.1:ENST00000645101.1:ENST00000646910.1:ENST00000646943.1:ENST00000645262.1:ENST00000646466.1:ENST00000642394.1:ENST00000645445.1:ENST00000643610.1:ENST00000644681.1:ENST00000645535.1:ENST00000644122.1:ENST00000646098.1:ENST00000644609.1:ENST00000642707.1:ENST00000642353.1:ENST00000647110.1:ENST00000644639.1:ENST00000642759.1:ENST00000646600.1:ENST00000646265.1:ENST00000644682.1:ENST00000642441.1:ENST00000642638.1:ENST00000646119.1:ENST00000644116.1:ENST00000642754.1:ENST00000643714.1:ENST00000643041.1:ENST00000644087.1:ENST00000647048.1:ENST00000647018.1:ENST00000646301.1:ENST00000647096.1:ENST00000647334.1:ENST00000428696.7:ENST00000645579.1:ENST00000646879.1:ENST00000643193.1:ENST00000415788.3:ENST00000643020.1:ENST00000645109.1:ENST00000642564.1:ENST00000643128.1:ENST00000643903.1:ENST00000646682.1:ENST00000642169.1:ENST00000644201.1:ENST00000645920.1:ENST00000645390.1:ENST00000450385.6:ENST00000644924.1:ENST00000425444.2:ENST00000646761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	4.98663	5.040385000000001	5.09414	4.11938e-9	4.02077e-10	4.43187e-7	4.98364e-8
chr9	70095227	70095327	5394884	0	+	0.45	(0.424,0.459]	chr9	481847	502	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.91426	5.03908	6.1639	1.12148e-7	1.54441e-10	9.48939e-6	2.03038e-8
chr2	203395555	203395655	1274000	0	+	0.35	(0.32,0.36]	chr2	132791	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000424558.5:ENST00000417864.5:ENST00000422511.6:ENST00000261016.11:ENST00000441061.5:ENST00000411547.5:ENST00000430574.5:ENST00000451591.6:ENST00000422719.5:ENST00000454023.1:ENST00000416396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	4.3783	5.038645000000001	5.69899	3.81705e-7	2.30074e-7	2.90385e-5	1.8106e-5
chr3	101509298	101509398	2375851	0	-	0.42	(0.392,0.424]	chr3	228448	78	INTRON	INTRON	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.68238	5.038585	5.39479	4.26975e-6	3.20208e-7	2.57151e-4	2.47387e-5
chr1	15878775	15878874	56137	0	+	0.50505	(0.49,0.526]	chr1	5334	17	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.38975	5.038455000000001	5.68716	9.92102e-4	3.37299e-8	0.0276375	3.12343e-6
chr19	4480482	4480582	9270681	0	+	0.51	(0.49,0.526]	chr19	894327	45	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000601353.5:ENST00000589486.5:ENST00000592691.1:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	4.38916	5.03816	5.68716	6.34142e-7	3.37299e-8	4.61699e-5	3.12343e-6
chr19	38648260	38648360	9344577	0	+	0.6	(0.57,0.629]	chr19	907168	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	4.80384	5.037834999999999	5.27183	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	54861411	54861510	628203	0	-	0.535354	(0.526,0.57]	chr1	69967	50	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	4.52211	5.03744	5.55277	4.3785e-11	1e-12	6.17372e-9	1.72912e-10
chr10	103335539	103335638	6244442	0	-	0.494949	(0.49,0.526]	chr10	559048	12	INTRON	INTRON	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.4628	5.037435	5.61207	7.611e-4	6.35974e-8	0.0225125	5.62451e-6
chr8	130243474	130243574	5276049	0	-	0.52	(0.49,0.526]	chr8	471480	61	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520342.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.64127	5.035489999999999	5.42971	2.4929e-4	5.89334e-7	0.0089494	4.28084e-5
chr2	181014426	181014526	1227103	0	+	0.36	(0.32,0.36]	chr2	128500	245	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	27	2	5.02236	5.0354600000000005	5.04856	1.56263e-8	5.89218e-12	1.54408e-6	9.39097e-10
chr15	55910628	55910727	8181608	0	-	0.474747	(0.459,0.49]	chr15	758950	50	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1:ENST00000502612.5:ENST00000514893.5:ENST00000507063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	4.99336	5.03545	5.07754	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	174221535	174221634	1617634	0	-	0.444444	(0.424,0.459]	chr2	167086	37	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	4.46912	5.035035000000001	5.60095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	38894928	38895028	2604028	0	+	0.51	(0.49,0.526]	chr4	249288	27	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.71489	5.034905	5.35492	1.81396e-4	1.0002e-6	0.0069054	7.00342e-5
chr19	17087167	17087267	9301133	0	+	0.68	(0.629,1]	chr19	900131	109	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.57849	5.03473	5.49097	2.2493e-4	9.87659e-8	0.00827964	8.31085e-6
chr5	137428818	137428918	3608514	0	-	0.51	(0.49,0.526]	chr5	327611	635	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	4.26631	5.0333950000000005	5.80048	2.32598e-6	8.0778e-9	1.50793e-4	8.33659e-7
chr3	27476688	27476788	2220228	0	-	0.5	(0.49,0.526]	chr3	215177	201	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	4.81591	5.033035	5.25016	1.20493e-12	1e-12	2.06392e-10	1.72912e-10
chr6	5661610	5661710	3698427	0	+	0.47	(0.459,0.49]	chr6	336670	479	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	4.1093	5.03303	5.95676	1.17119e-9	9.29923e-10	1.35849e-7	1.09893e-7
chr7	140912572	140912672	4875691	0	-	0.46	(0.459,0.49]	chr7	436369	620	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	4.73219	5.032185	5.33218	1.78412e-6	3.0068e-8	1.1709e-4	2.8316e-6
chr2	36394014	36394114	989744	0	+	0.47	(0.459,0.49]	chr2	107808	149	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.21222	5.031925	5.85163	9.25181e-6	5.06515e-9	5.14007e-4	5.39084e-7
chr7	73005175	73005275	4729639	0	-	0.6	(0.57,0.629]	chr7	424069	2	SS5_PROX	SS5_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	18	2	4.68132	5.031040000000001	5.38076	1.50304e-4	5.85803e-7	0.00577248	4.27724e-5
chr2	130363217	130363316	1142156	0	+	0.484848	(0.459,0.49]	chr2	122469	9	INTRON	INTRON	PTPN18	ENSG00000072135.13	ENST00000347849.7:ENST00000489215.5:ENST00000175756.10:ENST00000428843.5:ENST00000483617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.51255	5.030915	5.54928	6.3564e-4	2.53394e-7	0.0193151	1.97194e-5
chr6	2305200	2305300	3685922	0	+	0.47	(0.459,0.49]	chr6	335957	211	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	4.51255	5.030915	5.54928	6.3564e-4	2.53394e-7	0.0193151	1.97194e-5
chr15	28709588	28709688	8112906	0	-	0.48	(0.459,0.49]	chr15	750739	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GOLGA8M	ENSG00000188626.7	ENST00000563027.2:ENST00000563213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.57976	5.03018	5.4806	4.98571e-4	4.11395e-7	0.0160179	3.09732e-5
chr2	164710695	164710794	1598193	0	-	0.464646	(0.459,0.49]	chr2	165490	52	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000493868.5:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.57976	5.03018	5.4806	4.98571e-4	4.11395e-7	0.0160179	3.09732e-5
chr6	37997790	37997890	3772365	0	+	0.43	(0.424,0.459]	chr6	345070	674	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.89477	5.029335	6.1639	2.5121e-4	1.54441e-10	0.00902798	2.03038e-8
chr10	91167878	91167978	5932446	0	+	0.36	(0.32,0.36]	chr10	532030	44	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	4.83903	5.028035	5.21704	9.64646e-11	1e-12	1.30287e-8	1.72912e-10
chr3	182952529	182952629	2505339	0	-	0.44	(0.424,0.459]	chr3	239695	45	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	4.11093	5.027889999999999	5.94485	5.36389e-5	3.84993e-9	0.00243585	4.17496e-7
chr10	133510905	133511005	6031567	0	+	0.38	(0.36,0.392]	chr10	541403	125	INTRON	INTRON	SCART1	ENSG00000214279.13	ENST00000488261.6	protein_coding	retained_intron	protein_coding	retained_intron	4	25	2	3.9741	5.0267	6.0793	9.72537e-9	2.64141e-9	9.91923e-7	2.93923e-7
chr10	87324920	87325014	6194334	0	-	0.478723	(0.459,0.49]	chr10	554206	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000663683.1:ENST00000686862.1:ENST00000413961.5:ENST00000686013.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	4.65177	5.02623	5.40069	1.15324e-6	5.56898e-8	7.95154e-5	5.02653e-6
chr17	43166157	43166256	8937564	0	-	0.454545	(0.424,0.459]	chr17	859008	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	BRCA1:ENSG00000267002	ENSG00000012048.23:ENSG00000267002.4	ENST00000634433.1:ENST00000635600.1:ENST00000642336.1:ENST00000590740.2:ENST00000653081.1:ENST00000634503.1:ENST00000634994.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	30	245	2	4.9529	5.02607	5.09924	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	23302409	23302508	4329448	0	+	0.40404	(0.392,0.424]	chr7	391462	10	INTRON	INTRON	MALSU1	ENSG00000156928.5	ENST00000466681.2:ENST00000287543.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	65	2	4.91651	5.024565	5.13262	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	101968369	101968469	6477989	0	+	0.32	[0,0.32]	chr11	585268	41	INTRON	INTRON	CEP126	ENSG00000110318.15	ENST00000263468.13:ENST00000670091.1:ENST00000670318.1:ENST00000532529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.39782	5.0245049999999996	5.65119	0.00334699	1.20332e-6	0.0734189	8.2089e-5
chr3	129780512	129780612	2434520	0	-	0.29	[0,0.32]	chr3	233455	919	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.39782	5.0245049999999996	5.65119	0.00334699	1.20332e-6	0.0734189	8.2089e-5
chr5	80469806	80469906	3522732	0	-	0.3	[0,0.32]	chr5	321929	550	INTRON	INTRON	FAM151B-DT	ENSG00000249042.6	ENST00000666568.1	lncRNA	lncRNA	lncRNA	lncRNA	0	10	2	4.39782	5.0245049999999996	5.65119	0.00334699	1.20332e-6	0.0734189	8.2089e-5
chrX	115595325	115595424	10206855	0	+	0.272727	[0,0.32]	chrX	1016429	13	INTRON	INTRON	PLS3	ENSG00000102024.19	ENST00000355899.8:ENST00000489283.5:ENST00000626746.2:ENST00000289290.7:ENST00000481823.5:ENST00000539310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.39782	5.0245049999999996	5.65119	0.00334699	1.20332e-6	0.0734189	8.2089e-5
chrX	73955609	73955708	10163941	0	+	0.555556	(0.526,0.57]	chrX	1012984	62	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.38241	5.02394	5.66547	0.00101891	4.05077e-8	0.0276375	3.67181e-6
chr20	35709509	35709609	9735874	0	-	0.43	(0.424,0.459]	chr20	964161	2	SS3_PROX	SS3_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000465158.5:ENST00000448303.5:ENST00000470563.5:ENST00000615771.5:ENST00000471635.5:ENST00000468086.1:ENST00000475651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	73	2	4.49027	5.02382	5.55737	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	172281596	172281696	3665534	0	-	0.31	[0,0.32]	chr5	333249	469	INTRON	INTRON	UBTD2	ENSG00000168246.6	ENST00000393792.3	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.46657	5.023565	5.58056	0.00288167	1.7046e-6	0.0662445	1.13343e-4
chrX	132840721	132840821	10437319	0	-	0.28	[0,0.32]	chrX	1034989	825	INTRON	INTRON	HS6ST2	ENSG00000171004.19	ENST00000370833.7:ENST00000370836.6:ENST00000640529.2:ENST00000406696.5:ENST00000521489.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.46657	5.023565	5.58056	0.00288167	1.7046e-6	0.0662445	1.13343e-4
chr20	62817869	62817969	9686458	0	+	0.67	(0.629,1]	chr20	957270	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COL9A3	ENSG00000092758.18	ENST00000477612.5:ENST00000649368.1:ENST00000489045.5:ENST00000452372.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.68563	5.022679999999999	5.35973	1.13329e-4	4.20109e-7	0.00463413	3.14314e-5
chr5	171388006	171388106	3390678	0	+	0.73	(0.629,1]	chr5	311057	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.68563	5.022679999999999	5.35973	1.13329e-4	4.20109e-7	0.00463413	3.14314e-5
chr2	55358862	55358961	1451786	0	-	0.434343	(0.424,0.459]	chr2	150635	22	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	4.77691	5.022235	5.26756	8.0232e-6	4.08028e-8	4.54299e-4	3.72797e-6
chr15	25070364	25070446	7927955	0	+	0.487805	(0.459,0.49]	chr15	731711	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000551077.2:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1	lncRNA	lncRNA	lncRNA	lncRNA	10	101	2	4.47143	5.02178	5.57213	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	7923660	7923760	2832827	0	-	0.55	(0.526,0.57]	chr4	268413	512	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000358461.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.69362	5.02051	5.3474	1.98837e-4	1.05485e-6	0.00746609	7.33447e-5
chr5	131712239	131712337	3594951	0	-	0.306122	[0,0.32]	chr5	326417	12	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.27127	5.020355	5.76944	1.03327e-6	2.56854e-7	7.23599e-5	2.02856e-5
chr5	176919069	176919169	3669372	0	-	0.28	[0,0.32]	chr5	333798	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	4.27127	5.020355	5.76944	1.03327e-6	2.56854e-7	7.23599e-5	2.02856e-5
chr1	115647688	115647787	267598	0	+	0.50505	(0.49,0.526]	chr1	27546	46	INTRON	INTRON	VANGL1	ENSG00000173218.15	ENST00000355485.7:ENST00000369510.8:ENST00000310260.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	4.60733	5.0185200000000005	5.42971	5.89334e-7	4.64685e-8	4.28084e-5	4.23007e-6
chr11	48078493	48078593	6395974	0	+	0.46	(0.459,0.49]	chr11	573271	318	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	4.71471	5.018245	5.32178	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	23829597	23829696	1789904	0	+	0.474747	(0.459,0.49]	chr3	183449	177	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	60	2	4.79079	5.017935	5.24508	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	28602909	28603008	5825161	0	+	0.313131	[0,0.32]	chr10	523646	65	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	3.61847	5.017625	6.41678	2.40709e-4	7.3754e-11	0.00878409	1.00949e-8
chr11	9185815	9185914	6556009	0	-	0.424242	(0.392,0.424]	chr11	596167	44	INTRON	INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000526707.5:ENST00000681173.1:ENST00000530867.2:ENST00000681915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr16	24770241	24770341	8357609	0	+	0.41	(0.392,0.424]	chr16	779122	115	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr2	135144419	135144519	1152435	0	+	0.42	(0.392,0.424]	chr2	123128	81	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr4	118619009	118619107	2720837	0	+	0.397959	(0.392,0.424]	chr4	258661	5	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr5	16879605	16879704	3428288	0	-	0.424242	(0.392,0.424]	chr5	315273	15	INTRON	INTRON	MYO10	ENSG00000145555.15	ENST00000513610.6:ENST00000274203.13:ENST00000513882.5:ENST00000502436.5:ENST00000507288.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr6	87234822	87234921	3830006	0	+	0.414141	(0.392,0.424]	chr6	350922	9	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2:ENST00000466062.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr9	123071801	123071901	5484020	0	+	0.42	(0.392,0.424]	chr9	490140	3	SS5_PROX	SS5_PROX:INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.85654	5.01732	5.1781	1.84333e-4	2.48959e-5	0.00688171	0.00122627
chr1	158008028	158008128	311597	0	+	0.41	(0.392,0.424]	chr1	34672	139	INTRON	INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr2	62940318	62940418	1050947	0	+	0.42	(0.392,0.424]	chr2	111869	587	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr2	190271615	190271715	1650155	0	-	0.42	(0.392,0.424]	chr2	169616	100	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000392333.7:ENST00000485992.1:ENST00000409934.1:ENST00000489269.5:ENST00000495792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr21	16384100	16384199	9788736	0	+	0.414141	(0.392,0.424]	chr21	970618	4	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr22	21864022	21864122	9994901	0	-	0.42	(0.392,0.424]	chr22	995380	558	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr3	160769193	160769293	2069564	0	+	0.41	(0.392,0.424]	chr3	205522	121	INTRON	INTRON	PPM1L	ENSG00000163590.14	ENST00000497343.5:ENST00000498165.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.92302	5.017135	5.11125	1.45314e-4	3.31137e-5	0.00569484	0.00159224
chr12	11156638	11156737	7087905	0	-	0.222222	[0,0.32]	chr12	651870	351	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	17	2	4.19171	5.015974999999999	5.84024	1.59164e-6	1.72569e-7	1.07558e-4	1.40017e-5
chr17	48596983	48597058	8959274	0	-	0.52	(0.49,0.526]	chr17	861814	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HOXB3:HOXB6	ENSG00000120093.12:ENSG00000108511.10	ENST00000552000.2:ENST00000484302.3:ENST00000225648.4:ENST00000470193.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	142	2	4.52966	5.0159199999999995	5.50218	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	27547104	27547202	8538759	0	-	0.520408	(0.49,0.526]	chr16	802803	12	INTRON	INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	4.23074	5.015610000000001	5.80048	8.0778e-9	6.49275e-9	8.33659e-7	6.78195e-7
chr17	7871750	7871850	8862065	0	-	0.44	(0.424,0.459]	chr17	847873	48	INTRON	INTRON	NAA38	ENSG00000183011.14	ENST00000576861.5:ENST00000570555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	4.93733	5.014705	5.09208	8.32489e-10	1e-12	9.89956e-8	1.73382e-10
chr11	19163102	19163202	6337580	0	+	0.39	(0.36,0.392]	chr11	568794	4	SS3_PROX	SS3_PROX:INTRON	ZDHHC13	ENSG00000177054.14	ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	4.74255	5.01457	5.28659	5.25886e-10	1.56467e-10	6.43194e-8	2.05014e-8
chr8	125268657	125268757	5086773	0	+	0.48	(0.459,0.49]	chr8	455136	860	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.88247	5.014485	6.1465	0.0104144	6.25785e-11	0.170122	8.69617e-9
chr5	134849245	134849344	3322718	0	+	0.434343	(0.424,0.459]	chr5	305133	20	INTRON	INTRON	DDX46:C5orf24	ENSG00000145833.16:ENSG00000181904.9	ENST00000507053.1:ENST00000338051.4:ENST00000394976.4:ENST00000504727.1:ENST00000435259.2:ENST00000508791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.40599	5.013885	5.62178	0.00154565	2.83203e-7	0.0389999	2.17914e-5
chr1	157994731	157994831	311464	0	+	0.47	(0.459,0.49]	chr1	34672	6	INTRON	INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr16	18917371	18917470	8525969	0	-	0.474747	(0.459,0.49]	chr16	800833	58	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr3	136849633	136849732	2448886	0	-	0.474747	(0.459,0.49]	chr3	234936	22	INTRON	INTRON	NCK1-DT	ENSG00000239213.7	ENST00000661609.1:ENST00000666310.1:ENST00000461864.7:ENST00000470236.2:ENST00000667524.1:ENST00000474250.5:ENST00000666660.1:ENST00000663856.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr3	196256689	196256789	2529829	0	-	0.48	(0.459,0.49]	chr3	242501	80	INTRON	INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6:ENST00000411591.5:ENST00000430755.5:ENST00000473978.5:ENST00000460677.5:ENST00000444822.5:ENST00000412869.5:ENST00000438634.5:ENST00000491544.1:ENST00000443555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr5	43129320	43129419	3167212	0	+	0.484848	(0.459,0.49]	chr5	292365	44	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr9	132291323	132291421	5754209	0	-	0.479592	(0.459,0.49]	chr9	516386	23	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6:ENST00000436441.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.97981	5.0138300000000005	5.04785	3.36273e-5	2.39418e-5	0.00159406	0.00119556
chr22	50364626	50364726	9976623	0	+	0.44	(0.424,0.459]	chr22	992659	207	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.48802	5.01281	5.5376	0.00121831	4.83052e-7	0.0326347	3.58077e-5
chr4	183105520	183105620	2802207	0	+	0.43	(0.424,0.459]	chr4	264975	55	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.48802	5.01281	5.5376	0.00121831	4.83052e-7	0.0326347	3.58077e-5
chr5	109041226	109041324	3270702	0	+	0.346939	(0.32,0.36]	chr5	301258	34	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1:ENST00000505323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	4.51391	5.01211	5.51031	2.41138e-6	4.00732e-8	1.53938e-4	3.64474e-6
chr1	220200222	220200321	862800	0	-	0.484848	(0.459,0.49]	chr1	95880	30	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	166	2	4.46259	5.0121	5.56161	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	13046129	13046228	6826612	0	+	0.525253	(0.49,0.526]	chr12	624075	13	INTRON	INTRON	FAM234B	ENSG00000084444.14	ENST00000197268.13:ENST00000416494.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	356	3720	2	4.97436	5.011324999999999	5.04829	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	31012681	31012781	6098887	0	-	0.44	(0.424,0.459]	chr10	546673	133	INTRON	INTRON	ZNF438	ENSG00000183621.15	ENST00000436087.7:ENST00000413025.5:ENST00000442986.5:ENST00000452305.5:ENST00000375311.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr10	112773739	112773839	5983138	0	+	0.44	(0.424,0.459]	chr10	537541	361	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr15	74460267	74460367	8236381	0	-	0.45	(0.424,0.459]	chr15	764661	2	SS5_PROX	SS5_PROX:INTRON	UBL7	ENSG00000138629.16	ENST00000361351.8:ENST00000395081.7:ENST00000565335.5:ENST00000567435.5:ENST00000564488.5:ENST00000565130.5:ENST00000563081.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr21	36890960	36891060	9876440	0	-	0.43	(0.424,0.459]	chr21	979512	1233	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr5	119117427	119117525	3290411	0	+	0.438776	(0.424,0.459]	chr5	302402	7	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr9	729251	729351	5317966	0	+	0.44	(0.424,0.459]	chr9	475898	152	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1:ENST00000685380.1:ENST00000689214.1:ENST00000691645.1:ENST00000693143.1:ENST00000685590.1:ENST00000693021.1:ENST00000687662.1:ENST00000693088.1:ENST00000688567.1:ENST00000686846.1:ENST00000382293.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.96809	5.00974	5.05139	6.10851e-5	4.27641e-5	0.0027377	0.00199812
chr11	46580030	46580130	6600866	0	-	0.41	(0.392,0.424]	chr11	600433	306	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	4.68238	5.008615000000001	5.33485	3.20208e-7	4.44158e-11	2.47387e-5	6.22225e-9
chr9	33024008	33024106	5604371	0	-	0.418367	(0.392,0.424]	chr9	501648	35	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000468275.6:ENST00000473270.1:ENST00000489583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	4.68238	5.008615000000001	5.33485	3.20208e-7	4.44158e-11	2.47387e-5	6.22225e-9
chr14	75025989	75026088	7869208	0	-	0.484848	(0.459,0.49]	chr14	725170	26	INTRON	INTRON	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7:ENST00000553713.5:ENST00000556257.5:ENST00000556453.5:ENST00000555144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	4.90223	5.008265	5.1143	4.9806e-11	1e-12	6.98308e-9	1.72912e-10
chr14	75014937	75015034	7869090	0	-	0.391753	(0.36,0.392]	chr14	725149	13	UTR3	UTR3:EXON_MRNA	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.57244	5.0059000000000005	5.43936	3.42448e-6	2.92322e-6	2.10826e-4	1.80583e-4
chr16	67600942	67601041	8410200	0	+	0.363636	(0.36,0.392]	chr16	787491	280	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.57244	5.0059000000000005	5.43936	3.42448e-6	2.92322e-6	2.10826e-4	1.80583e-4
chr3	170094046	170094146	2489772	0	-	0.37	(0.36,0.392]	chr3	238463	66	UTR3	UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000484068.5:ENST00000495893.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.57244	5.0059000000000005	5.43936	3.42448e-6	2.92322e-6	2.10826e-4	1.80583e-4
chr1	162514715	162514815	320217	0	+	0.39	(0.36,0.392]	chr1	36211	15	INTRON	INTRON	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.38376	5.005805	5.62785	1.64803e-5	5.69775e-7	8.48507e-4	4.16055e-5
chr2	71375723	71375823	1070720	0	+	0.38	(0.36,0.392]	chr2	113772	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF638:ENSG00000281195	ENSG00000075292.19:ENSG00000281195.1	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000434786.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	15	2	4.38376	5.005805	5.62785	1.64803e-5	5.69775e-7	8.48507e-4	4.16055e-5
chr17	30903372	30903468	8907376	0	-	0.46875	(0.459,0.49]	chr17	853691	25	INTRON	INTRON	TEFM	ENSG00000172171.11	ENST00000581216.6:ENST00000306049.9:ENST00000580840.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.27284	5.00554	5.73824	0.00227779	2.1921e-8	0.0552099	2.0899e-6
chr2	130840100	130840200	1142328	0	+	0.49	(0.459,0.49]	chr2	122517	20	INTRON	INTRON	ARHGEF4	ENSG00000136002.20	ENST00000409359.7:ENST00000526381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.27284	5.00554	5.73824	0.00227779	2.1921e-8	0.0552099	2.0899e-6
chr4	89796551	89796651	2957546	0	-	0.35	(0.32,0.36]	chr4	277924	247	INTRON	INTRON	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.75647	5.005520000000001	6.25457	6.44559e-5	6.8782e-10	0.00284455	8.23717e-8
chr12	20431416	20431516	6842678	0	+	0.34	(0.32,0.36]	chr12	625044	608	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	4.39699	5.00512	5.61325	1.45077e-6	8.67854e-8	9.68953e-5	7.51259e-6
chr10	103646490	103646590	6245287	0	-	0.6	(0.57,0.629]	chr10	559177	189	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000420222.2:ENST00000691105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	4.57357	5.004440000000001	5.43531	2.83977e-7	3.84418e-8	2.21461e-5	3.50528e-6
chr7	7188002	7188102	4303405	0	+	0.44	(0.424,0.459]	chr7	390130	48	INTRON	INTRON	C1GALT1	ENSG00000106392.11	ENST00000429911.5:ENST00000436587.7:ENST00000467716.1:ENST00000476068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	4.73523	5.003864999999999	5.2725	5.26214e-11	1.84447e-11	7.33664e-9	2.73328e-9
chr7	86934849	86934948	4764938	0	-	0.414141	(0.392,0.424]	chr7	426724	76	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	3.73536	5.00366	6.27196	3.4035e-5	1.10884e-10	0.0016098	1.47443e-8
chr11	57771320	57771420	6398596	0	+	0.37	(0.36,0.392]	chr11	573716	68	INTRON	INTRON	CTNND1	ENSG00000198561.16	ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr12	16349588	16349684	6833716	0	+	0.364583	(0.36,0.392]	chr12	624668	6	INTRON	INTRON	MGST1	ENSG00000008394.13	ENST00000010404.6:ENST00000536371.5:ENST00000396210.8:ENST00000543076.5:ENST00000539036.5:ENST00000542256.5:ENST00000537878.5:ENST00000539708.5:ENST00000535309.5:ENST00000396209.5:ENST00000540056.5:ENST00000540126.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr18	758529	758629	9166019	0	-	0.39	(0.36,0.392]	chr18	883238	13	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr3	44758721	44758820	2254416	0	-	0.373737	(0.36,0.392]	chr3	217536	40	INTRON	INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr3	150547526	150547625	2042335	0	+	0.383838	(0.36,0.392]	chr3	204164	3	INTRON	INTRON	EIF2A	ENSG00000144895.12	ENST00000463863.5:ENST00000487799.5:ENST00000473499.1:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr5	123363097	123363196	3579524	0	-	0.363636	(0.36,0.392]	chr5	325140	39	INTRON	INTRON	CEP120	ENSG00000168944.17	ENST00000676068.1:ENST00000306467.10:ENST00000306481.11:ENST00000328236.10:ENST00000674667.1:ENST00000674620.1:ENST00000675814.1:ENST00000675330.1:ENST00000675104.1:ENST00000675686.1:ENST00000675442.1:ENST00000508442.7:ENST00000675852.1:ENST00000675003.1:ENST00000675283.1:ENST00000675564.1:ENST00000674684.1:ENST00000508138.5:ENST00000513565.6:ENST00000675444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr9	35392205	35392305	5373993	0	+	0.39	(0.36,0.392]	chr9	479884	11	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1:ENST00000636694.1:ENST00000637271.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.96718	5.003195	5.03921	1.24104e-4	9.59768e-5	0.0049353	0.00399331
chr1	223998954	223999053	439823	0	+	0.333333	(0.32,0.36]	chr1	47460	25	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4:ENST00000327086.8:ENST00000449219.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	14	2	4.49493	5.00262	5.51031	1.01106e-5	2.41138e-6	5.51435e-4	1.53938e-4
chr11	33278234	33278334	6367403	0	+	0.33	(0.32,0.36]	chr11	570374	192	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.49493	5.00262	5.51031	1.01106e-5	2.41138e-6	5.51435e-4	1.53938e-4
chr1	155808438	155808537	778395	0	-	0.414141	(0.392,0.424]	chr1	85950	29	INTRON	INTRON	GON4L	ENSG00000116580.20	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000361040.9:ENST00000622608.2:ENST00000471341.5:ENST00000467009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	4.89327	5.00226	5.11125	3.31137e-5	3.77123e-8	0.00159224	3.4456e-6
chr22	28589155	28589255	10007195	0	-	0.38	(0.36,0.392]	chr22	996542	1462	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.30331	5.002025	5.70074	2.34074e-5	3.77982e-7	0.00116109	2.84782e-5
chr12	42216771	42216871	7148472	0	-	0.39	(0.36,0.392]	chr12	656171	39	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.4918	5.001925	5.51205	4.36875e-6	2.39077e-6	2.58808e-4	1.5204e-4
chr17	1870735	1870835	8627118	0	+	0.39	(0.36,0.392]	chr17	814304	166	INTRON	INTRON	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.4918	5.001925	5.51205	4.36875e-6	2.39077e-6	2.58808e-4	1.5204e-4
chr7	77562438	77562538	4440972	0	+	0.42	(0.392,0.424]	chr7	399533	163	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	4.03703	5.001825	5.96662	1.48653e-4	6.28695e-9	0.00578975	6.5739e-7
chr8	70660741	70660839	5191163	0	-	0.408163	(0.392,0.424]	chr8	465237	25	INTRON	INTRON	LACTB2	ENSG00000147592.9	ENST00000522447.5:ENST00000276590.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.03703	5.001825	5.96662	1.48653e-4	6.28695e-9	0.00578975	6.5739e-7
chr20	3210803	3210901	9556005	0	+	0.44898	(0.424,0.459]	chr20	946154	8	INTRON	INTRON	ITPA	ENSG00000125877.13	ENST00000483354.5:ENST00000460676.5:ENST00000490838.6:ENST00000380113.8:ENST00000609835.5:ENST00000460550.5:ENST00000455664.6:ENST00000399838.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	4.46516	5.00138	5.5376	2.35249e-6	4.83052e-7	1.51159e-4	3.58077e-5
chr9	125205864	125205963	5486227	0	+	0.313131	[0,0.32]	chr9	490461	24	INTRON	INTRON	RABEPK	ENSG00000136933.17	ENST00000373538.8:ENST00000259460.12:ENST00000394125.8:ENST00000628863.2:ENST00000373544.5:ENST00000416065.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	4.6643	5.000859999999999	5.33742	7.73526e-12	1e-12	1.19895e-9	1.72912e-10
chr2	23757017	23757117	1394217	0	-	0.42	(0.392,0.424]	chr2	144472	2	SS5_PROX	SS5_PROX:INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	4.48183	5.000450000000001	5.51907	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	67741948	67742048	7856693	0	-	0.47	(0.459,0.49]	chr14	723365	118	INTRON	INTRON	ZFYVE26	ENSG00000072121.17	ENST00000394455.6	protein_coding	retained_intron	protein_coding	retained_intron	0	14	2	4.76501	5.00002	5.23503	1.46149e-4	5.25256e-6	0.00564049	3.11102e-4
chr14	102155359	102155459	7757335	0	+	0.49	(0.459,0.49]	chr14	712301	148	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.76501	5.00002	5.23503	1.46149e-4	5.25256e-6	0.00564049	3.11102e-4
chr17	17277580	17277680	8885510	0	-	0.49	(0.459,0.49]	chr17	850405	10	INTRON	INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.76501	5.00002	5.23503	1.46149e-4	5.25256e-6	0.00564049	3.11102e-4
chr5	80626915	80627014	3522924	0	-	0.474747	(0.459,0.49]	chr5	321943	8	UTR3	UTR3:EXON_MRNA	DHFR	ENSG00000228716.7	ENST00000439211.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.76501	5.00002	5.23503	1.46149e-4	5.25256e-6	0.00564049	3.11102e-4
chrX	73953923	73954022	10163924	0	+	0.484848	(0.459,0.49]	chrX	1012984	45	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.76501	5.00002	5.23503	1.46149e-4	5.25256e-6	0.00564049	3.11102e-4
chr1	93271712	93271809	694957	0	-	0.278351	[0,0.32]	chr1	75289	16	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000602488.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	4.89255	4.99985	5.10715	7.53496e-5	2.15736e-7	0.00322158	1.70234e-5
chr16	48373859	48373959	8552158	0	-	0.43	(0.424,0.459]	chr16	805166	81	INTRON	INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000394725.3:ENST00000563745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	4.54922	4.9998249999999995	5.45043	6.24647e-10	1.37268e-12	7.58161e-8	2.33094e-10
chr11	6562381	6562481	6308293	0	+	0.46	(0.459,0.49]	chr11	565944	27	INTRON	INTRON	DNHD1	ENSG00000179532.13	ENST00000254579.11:ENST00000534210.6:ENST00000524401.2:ENST00000531903.5:ENST00000526027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.83271	4.999715	5.16672	1.09213e-4	7.74288e-6	0.00442392	4.39068e-4
chr14	73773002	73773102	7864850	0	-	0.49	(0.459,0.49]	chr14	724289	128	INTRON	INTRON	MIDEAS	ENSG00000156030.14	ENST00000394071.6:ENST00000486739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.83271	4.999715	5.16672	1.09213e-4	7.74288e-6	0.00442392	4.39068e-4
chr19	12172577	12172677	9291679	0	+	0.46	(0.459,0.49]	chr19	898273	28	INTRON	INTRON	ZNF136	ENSG00000196646.12	ENST00000439995.5:ENST00000425827.5:ENST00000652580.1:ENST00000343979.6:ENST00000418338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.83271	4.999715	5.16672	1.09213e-4	7.74288e-6	0.00442392	4.39068e-4
chr4	68326713	68326813	2911364	0	-	0.49	(0.459,0.49]	chr4	274006	21	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.83271	4.999715	5.16672	1.09213e-4	7.74288e-6	0.00442392	4.39068e-4
chr5	175963772	175963869	3667679	0	-	0.484536	(0.459,0.49]	chr5	333466	20	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000265097.9:ENST00000628318.2:ENST00000514861.5:ENST00000513482.1:ENST00000510300.5:ENST00000511062.5:ENST00000513118.1:ENST00000513006.1:ENST00000514250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.83271	4.999715	5.16672	1.09213e-4	7.74288e-6	0.00442392	4.39068e-4
chr10	121879281	121879380	6276978	0	-	0.454545	(0.424,0.459]	chr10	561699	3	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000692087.1:ENST00000690415.1:ENST00000687935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	4.90402	4.99908	5.09414	4.02077e-10	1e-12	4.98364e-8	1.72912e-10
chr2	39112141	39112241	1424533	0	-	0.46	(0.459,0.49]	chr2	148245	436	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	4.9744	4.9965399999999995	5.01868	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	179334310	179334409	365670	0	+	0.282828	[0,0.32]	chr1	39475	105	INTRON	INTRON	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8:ENST00000426956.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.98571	4.996535	6.00736	3.95466e-4	2.47801e-8	0.0132556	2.36756e-6
chr4	153231299	153231399	2763906	0	+	0.32	[0,0.32]	chr4	262292	79	INTRON	INTRON	TRIM2	ENSG00000109654.16	ENST00000676423.1:ENST00000675745.1:ENST00000676348.1:ENST00000676408.1:ENST00000674874.1:ENST00000675315.1:ENST00000676458.1:ENST00000675782.1:ENST00000437508.7:ENST00000338700.10:ENST00000675293.1:ENST00000676172.1:ENST00000674976.1:ENST00000675411.1:ENST00000676305.1:ENST00000676029.1:ENST00000675627.1:ENST00000675780.1:ENST00000675239.1:ENST00000674718.1:ENST00000676169.1:ENST00000675862.1:ENST00000494872.6:ENST00000460908.2:ENST00000674787.1:ENST00000675623.1:ENST00000433687.2:ENST00000632856.2:ENST00000441616.6:ENST00000675136.1:ENST00000675673.1:ENST00000675492.1:ENST00000675744.1:ENST00000675835.1:ENST00000675425.1:ENST00000675384.1:ENST00000675063.1:ENST00000675340.1:ENST00000479711.6:ENST00000675054.1:ENST00000676158.1:ENST00000676224.1:ENST00000674786.1:ENST00000675710.1:ENST00000502281.3:ENST00000675363.1:ENST00000674876.1:ENST00000675159.1:ENST00000675611.1:ENST00000675343.1:ENST00000676220.1:ENST00000676033.1:ENST00000674872.1:ENST00000675899.1:ENST00000675049.1:ENST00000675871.1:ENST00000676167.1:ENST00000676335.1:ENST00000675146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	4.81498	4.996090000000001	5.1772	5.87341e-5	3.34826e-7	0.00262682	2.57546e-5
chr12	104059759	104059859	7265473	0	-	0.51	(0.49,0.526]	chr12	669208	91	INTRON	INTRON	GLT8D2	ENSG00000120820.13	ENST00000548660.5	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	4.89039	4.99594	5.10149	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	150721143	150721240	3639458	0	-	0.391753	(0.36,0.392]	chr5	330970	10	INTRON	INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000518909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	4.96718	4.995735	5.02429	1.24104e-4	1.54207e-8	0.0049353	1.51982e-6
chr1	119937756	119937856	739357	0	-	0.45	(0.424,0.459]	chr1	79315	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.36966	4.99572	5.62178	3.96287e-6	2.83203e-7	2.39291e-4	2.17914e-5
chr15	52663077	52663177	8175356	0	-	0.44	(0.424,0.459]	chr15	758353	39	INTRON	INTRON	FAM214A	ENSG00000047346.13	ENST00000619572.5:ENST00000534964.6:ENST00000261844.11:ENST00000399202.8:ENST00000562135.5:ENST00000566768.5:ENST00000561490.5:ENST00000561543.5:ENST00000568863.1:ENST00000562351.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.36966	4.99572	5.62178	3.96287e-6	2.83203e-7	2.39291e-4	2.17914e-5
chr15	50641343	50641443	8165618	0	-	0.4	(0.392,0.424]	chr15	757156	14	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.09143	4.995235	5.89904	2.16736e-8	1.45195e-8	2.09062e-6	1.44044e-6
chr14	103443453	103443552	7763458	0	+	0.363636	(0.36,0.392]	chr14	712917	15	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	4.84953	4.99337	5.13721	3.76228e-11	1e-12	5.3683e-9	1.72912e-10
chr7	5527651	5527747	4617369	0	-	0.385417	(0.36,0.392]	chr7	415883	14	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2414	14755	2	4.97654	4.99329	5.01004	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	30699100	30699170	8370066	0	+	0.671429	(0.629,1]	chr16	781446	3	INTRON	INTRON	SRCAP	ENSG00000080603.17	ENST00000411466.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.96491	4.99313	5.02135	1.5112e-5	9.70346e-6	8.01855e-4	5.37523e-4
chr21	29346745	29346845	9796810	0	+	0.45	(0.424,0.459]	chr21	971203	7	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.29889	4.992694999999999	5.6865	1.12945e-5	9.64047e-8	6.02727e-4	8.13052e-6
chr5	178722086	178722186	3676746	0	-	0.45	(0.424,0.459]	chr5	334712	81	INTRON	INTRON	ZNF354A	ENSG00000169131.13	ENST00000335815.7:ENST00000520331.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.29889	4.992694999999999	5.6865	1.12945e-5	9.64047e-8	6.02727e-4	8.13052e-6
chr12	71621788	71621885	7209947	0	-	0.381443	(0.36,0.392]	chr12	664959	11	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	3.83113	4.991855	6.15258	6.41601e-4	1.50388e-9	0.0193935	1.73555e-7
chr5	141532556	141532654	3624492	0	-	0.377551	(0.36,0.392]	chr5	329151	25	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000494967.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	3.83113	4.991855	6.15258	6.41601e-4	1.50388e-9	0.0193935	1.73555e-7
chr7	105267405	105267505	4799075	0	-	0.45	(0.424,0.459]	chr7	431071	605	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	4.89058	4.99133	5.09208	8.77883e-9	8.32489e-10	9.05568e-7	9.89956e-8
chr4	82373678	82373756	2932218	0	-	0.628205	(0.57,0.629]	chr4	275772	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	309	2	4.76929	4.990905	5.21252	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	76371141	76371241	6655493	0	-	0.45	(0.424,0.459]	chr11	610300	26	INTRON	INTRON	THAP12	ENSG00000137492.9	ENST00000682527.1:ENST00000260045.8:ENST00000684059.1:ENST00000683600.1:ENST00000682046.1:ENST00000682978.1:ENST00000684702.1:ENST00000528993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr12	28368812	28368912	6858472	0	+	0.45	(0.424,0.459]	chr12	626438	59	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr12	49148023	49148120	6901589	0	+	0.453608	(0.424,0.459]	chr12	629026	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000258017	ENSG00000258017.3	ENST00000656133.1:ENST00000665211.1:ENST00000664160.1:ENST00000667827.1:ENST00000687351.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr12	107073853	107073952	7271303	0	-	0.454545	(0.424,0.459]	chr12	669779	4	INTRON	INTRON	CRY1	ENSG00000008405.12	ENST00000008527.10:ENST00000550633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr14	73928124	73928224	7700423	0	+	0.45	(0.424,0.459]	chr14	707690	5	INTRON	INTRON	ZNF410	ENSG00000119725.21	ENST00000540593.5:ENST00000555730.6:ENST00000324593.10:ENST00000556396.5:ENST00000555044.6:ENST00000398139.7:ENST00000442160.7:ENST00000334521.8:ENST00000557214.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr15	72573376	72573475	8035511	0	+	0.454545	(0.424,0.459]	chr15	742213	6	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000561987.5:ENST00000565950.1:ENST00000561770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr16	54040529	54040627	8391278	0	+	0.428571	(0.424,0.459]	chr16	784259	11	UTR3	UTR3:EXON_MRNA:INTRON	FTO	ENSG00000140718.21	ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr5	43690356	43690455	3169020	0	+	0.444444	(0.424,0.459]	chr5	292558	122	INTRON	INTRON	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000503059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr5	134924383	134924470	3323308	0	+	0.448276	(0.424,0.459]	chr5	305199	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCBD2:MTND6P4	ENSG00000132570.15:ENSG00000249119.1	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1:ENST00000506002.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr5	180288661	180288760	3682667	0	-	0.434343	(0.424,0.459]	chr5	335390	12	INTRON	INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000393362.8:ENST00000425491.6:ENST00000523583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr9	125663361	125663460	5740199	0	-	0.444444	(0.424,0.459]	chr9	514273	52	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000373498.5:ENST00000394060.7:ENST00000427078.5:ENST00000448439.1:ENST00000373496.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.71424	4.9909	5.26756	3.07139e-4	8.0232e-6	0.0105767	4.54299e-4
chr1	36467730	36467809	571618	0	-	0.56962	(0.526,0.57]	chr1	64348	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSF3R	ENSG00000119535.18	ENST00000373103.5:ENST00000373104.5:ENST00000373106.6:ENST00000361632.8:ENST00000480825.6:ENST00000464465.6:ENST00000331941.6:ENST00000487540.6:ENST00000484762.1:ENST00000466138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	39	2	3.59062	4.99082	6.39102	1.36164e-8	1e-12	1.35989e-6	1.72912e-10
chr1	174503443	174503543	353478	0	+	0.44	(0.424,0.459]	chr1	38884	1089	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.79703	4.990455000000001	5.18388	2.28148e-4	1.21594e-5	0.00827964	6.58699e-4
chr16	8834935	8835034	8313439	0	+	0.434343	(0.424,0.459]	chr16	774670	58	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.79703	4.990455000000001	5.18388	2.28148e-4	1.21594e-5	0.00827964	6.58699e-4
chr3	9380102	9380202	1756685	0	+	0.45	(0.424,0.459]	chr3	180048	2	SS3_PROX	SS3_PROX:INTRON	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000441127.5:ENST00000416603.1:ENST00000461636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.79703	4.990455000000001	5.18388	2.28148e-4	1.21594e-5	0.00827964	6.58699e-4
chr3	125258426	125258526	2418231	0	-	0.43	(0.424,0.459]	chr3	231823	237	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.79703	4.990455000000001	5.18388	2.28148e-4	1.21594e-5	0.00827964	6.58699e-4
chr11	73510657	73510738	6438953	0	+	0.333333	(0.32,0.36]	chr11	581786	1	EXON_PSEUDO	EXON_PSEUDO	ENSG00000256148	ENSG00000256148.1	ENST00000540641.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	26	2	4.95632	4.98934	5.02236	1.56263e-8	3.37868e-11	1.54408e-6	4.84285e-9
chr16	21974575	21974674	8347092	0	+	0.40404	(0.392,0.424]	chr16	778166	2	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	4.92302	4.989025	5.05503	1.45314e-4	2.39312e-9	0.00569484	2.68297e-7
chr2	206122988	206123087	1677005	0	-	0.333333	(0.32,0.36]	chr2	172423	83	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.68389	4.988535000000001	5.29318	1.5251e-5	1.67087e-6	8.01855e-4	1.09706e-4
chr6	69690985	69691085	4097036	0	-	0.35	(0.32,0.36]	chr6	373348	141	INTRON	INTRON	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	4.68389	4.988535000000001	5.29318	1.5251e-5	1.67087e-6	8.01855e-4	1.09706e-4
chr4	4657936	4658036	2556995	0	+	0.58	(0.57,0.629]	chr4	246050	80	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000608184.2:ENST00000653097.1:ENST00000499430.7:ENST00000610009.5:ENST00000665126.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	2	34	2	3.81758	4.988225	6.15887	7.89984e-7	1.28776e-11	5.59068e-5	1.96737e-9
chr6	165708818	165708918	4267826	0	-	0.7	(0.629,1]	chr6	386874	457	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.83202	4.9876000000000005	5.14318	4.13761e-5	3.40591e-6	0.00192437	2.08838e-4
chr17	82273090	82273124	9034343	0	-	0.764706	(0.629,1]	chr17	873303	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.88829	4.987435	5.08658	2.76563e-5	5.52146e-6	0.00135477	3.23814e-4
chrX	103215172	103215238	10189647	0	+	0.712121	(0.629,1]	chrX	1014640	2	UTR5	UTR5:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.88829	4.987435	5.08658	2.76563e-5	5.52146e-6	0.00135477	3.23814e-4
chr5	116233738	116233838	3287169	0	+	0.44	(0.424,0.459]	chr5	302259	992	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.51855	4.987030000000001	5.45551	1.50668e-6	8.67885e-7	9.96778e-5	6.19626e-5
chr7	69938777	69938877	4410103	0	+	0.43	(0.424,0.459]	chr7	396971	389	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2:ENST00000643587.1:ENST00000656998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.51855	4.987030000000001	5.45551	1.50668e-6	8.67885e-7	9.96778e-5	6.19626e-5
chr14	45244758	45244857	7816836	0	-	0.30303	[0,0.32]	chr14	719470	15	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.79564	4.98642	5.1772	5.01883e-4	5.87341e-5	0.0161742	0.00262682
chr4	150753208	150753308	3054158	0	-	0.29	[0,0.32]	chr4	283577	175	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.79564	4.98642	5.1772	5.01883e-4	5.87341e-5	0.0161742	0.00262682
chr4	183926919	183927019	2806397	0	+	0.32	[0,0.32]	chr4	265327	196	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1:ENST00000308497.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.79564	4.98642	5.1772	5.01883e-4	5.87341e-5	0.0161742	0.00262682
chr2	61505875	61505974	1459523	0	-	0.292929	[0,0.32]	chr2	151763	32	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr2	169590762	169590862	1201353	0	+	0.31	[0,0.32]	chr2	125943	55	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr20	1369779	1369879	9551885	0	+	0.3	[0,0.32]	chr20	945693	73	INTRON	INTRON	SDCBP2-AS1	ENSG00000234684.8	ENST00000609470.6:ENST00000670879.1:ENST00000609285.6:ENST00000446423.2:ENST00000653665.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr20	53352759	53352859	9676410	0	+	0.3	[0,0.32]	chr20	955971	958	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10:ENST00000603338.2:ENST00000605656.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr4	26686146	26686246	2592050	0	+	0.29	[0,0.32]	chr4	248730	20	INTRON	INTRON	TBC1D19	ENSG00000109680.11	ENST00000512840.5:ENST00000264866.9:ENST00000502873.5:ENST00000511789.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr4	158851120	158851220	2776380	0	+	0.32	[0,0.32]	chr4	263354	4	SS3_PROX	SS3_PROX:INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000512986.5:ENST00000504715.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr5	16765679	16765779	3427134	0	-	0.3	[0,0.32]	chr5	315211	2	SS5_PROX	SS5_PROX:INTRON	MYO10	ENSG00000145555.15	ENST00000513610.6:ENST00000274203.13:ENST00000513882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr6	38570609	38570709	4055647	0	-	0.32	[0,0.32]	chr6	369512	657	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr7	105190840	105190940	4798306	0	-	0.32	[0,0.32]	chr7	431058	212	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5:ENST00000476117.1:ENST00000482897.5:ENST00000460391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr7	129296118	129296218	4542769	0	+	0.31	[0,0.32]	chr7	408714	703	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr8	79994704	79994804	5199866	0	-	0.28	[0,0.32]	chr8	465753	359	INTRON	INTRON	MRPS28	ENSG00000147586.10	ENST00000276585.9:ENST00000519386.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1:ENST00000518371.2:ENST00000522987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.8652	4.986174999999999	5.10715	4.11137e-4	7.53496e-5	0.0138446	0.00322158
chr10	77908559	77908658	6177742	0	-	0.585859	(0.57,0.629]	chr10	553268	192	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.46827	4.985835	5.5034	5.2773e-4	1.59473e-7	0.0167673	1.31413e-5
chr15	41649223	41649322	7952043	0	+	0.515152	(0.49,0.526]	chr15	734958	273	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.85538	4.985755	5.11613	6.26806e-5	1.03252e-5	0.00277665	5.57702e-4
chr17	44813219	44813305	8943388	0	-	0.523256	(0.49,0.526]	chr17	860071	3	UTR5	UTR5:EXON_MRNA:INTRON	GJC1	ENSG00000182963.11	ENST00000590758.3:ENST00000592524.6:ENST00000591424.5:ENST00000587239.5:ENST00000586267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.85538	4.985755	5.11613	6.26806e-5	1.03252e-5	0.00277665	5.57702e-4
chr2	45693645	45693745	1011899	0	+	0.5	(0.49,0.526]	chr2	109511	74	INTRON	INTRON	PRKCE	ENSG00000171132.14	ENST00000421201.1:ENST00000306156.8:ENST00000462720.6:ENST00000480453.5:ENST00000476675.5:ENST00000467135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.85538	4.985755	5.11613	6.26806e-5	1.03252e-5	0.00277665	5.57702e-4
chr9	136912969	136913068	5528479	0	+	0.515152	(0.49,0.526]	chr9	497578	26	INTRON	INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7:ENST00000482854.5:ENST00000469701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.85538	4.985755	5.11613	6.26806e-5	1.03252e-5	0.00277665	5.57702e-4
chr12	25979873	25979972	6848178	0	+	0.545455	(0.526,0.57]	chr12	625649	56	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000538081.5:ENST00000615708.4:ENST00000542865.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	4.72818	4.98462	5.24106	1.34659e-12	1.24889e-12	2.28243e-10	2.13425e-10
chr9	506716	506816	5315722	0	+	0.43	(0.424,0.459]	chr9	475825	2	SS5_PROX	SS5_PROX:INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000688973.1:ENST00000687982.1:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000692174.1:ENST00000693552.1:ENST00000685882.1:ENST00000685947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	57	2	4.95896	4.98458	5.0102	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	48656647	48656746	7157856	0	-	0.424242	(0.392,0.424]	chr12	657592	12	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549463.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	72	2	4.79726	4.9845	5.17174	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34435781	34435881	9632981	0	+	0.45	(0.424,0.459]	chr20	950773	109	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	4.61423	4.984135	5.35404	4.85762e-7	4.031e-12	3.605e-5	6.4979e-10
chr1	67418218	67418318	646040	0	-	0.5	(0.49,0.526]	chr1	71787	25	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000462814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.47833	4.983775	5.48922	3.41555e-7	2.5213e-7	2.60631e-5	2.01203e-5
chr1	7975153	7975253	22745	0	+	0.34	(0.32,0.36]	chr1	2208	33	INTRON	INTRON	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.57052	4.983140000000001	5.39576	9.86331e-6	2.95142e-6	5.39872e-4	1.84947e-4
chr6	85676748	85676848	4120512	0	-	0.35	(0.32,0.36]	chr6	375573	42	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SNHG5	ENSG00000203875.13	ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	14	2	4.57052	4.983140000000001	5.39576	9.86331e-6	2.95142e-6	5.39872e-4	1.84947e-4
chr16	75431988	75432088	8604756	0	-	0.58	(0.57,0.629]	chr16	811203	124	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000566901.5:ENST00000565646.5:ENST00000564286.1:ENST00000566254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.93425	4.982794999999999	5.03134	2.91369e-5	1.22122e-5	0.00141183	6.58806e-4
chr8	42295457	42295556	4975789	0	+	0.59596	(0.57,0.629]	chr8	446304	15	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.93425	4.982794999999999	5.03134	2.91369e-5	1.22122e-5	0.00141183	6.58806e-4
chrX	13693473	13693572	10084201	0	+	0.59596	(0.57,0.629]	chrX	1005777	38	INTRON	INTRON	RAB9A	ENSG00000123595.8	ENST00000464506.2:ENST00000243325.6:ENST00000618931.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.93425	4.982794999999999	5.03134	2.91369e-5	1.22122e-5	0.00141183	6.58806e-4
chr1	151409228	151409328	766069	0	-	0.42	(0.392,0.424]	chr1	83573	4	SS3_PROX	SS3_PROX:INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	4.92633	4.98229	5.03825	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	75435711	75435810	7704917	0	+	0.484848	(0.459,0.49]	chr14	708286	30	INTRON	INTRON	JDP2	ENSG00000140044.13	ENST00000419727.6:ENST00000559773.5:ENST00000651602.1:ENST00000559060.5:ENST00000558068.1:ENST00000437176.5:ENST00000435893.6:ENST00000267569.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	4.62945	4.981775000000001	5.3341	4.09469e-11	1e-12	5.774e-9	1.73382e-10
chr17	43233961	43234061	8937801	0	-	0.67	(0.629,1]	chr17	859071	38	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	77	1369	2	4.95056	4.9803	5.01004	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	136916119	136916217	10232225	0	+	0.346939	(0.32,0.36]	chrX	1019093	15	INTRON	INTRON	TM9SF5P	ENSG00000234062.9	ENST00000650669.2:ENST00000687469.1:ENST00000431464.6:ENST00000685550.1:ENST00000685929.1:ENST00000424306.5:ENST00000687978.1:ENST00000688713.1:ENST00000693626.1:ENST00000686432.1:ENST00000693698.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	71	2	4.78563	4.98021	5.17479	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	8722	8818	10480464	0	+	0.427083	(0.424,0.459]	chrM	1038999	2	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	17	122	2	4.22355	4.97982	5.73609	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	72883243	72883343	7393032	0	+	0.39	(0.36,0.392]	chr13	683043	287	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.3312	4.979525	5.62785	0.00387074	5.69775e-7	0.078873	4.16055e-5
chr14	103481072	103481169	7763862	0	+	0.360825	(0.36,0.392]	chr14	712992	7	EXON_MRNA	EXON_MRNA:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000559274.1:ENST00000679299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.3312	4.979525	5.62785	0.00387074	5.69775e-7	0.078873	4.16055e-5
chr5	10360054	10360154	3119920	0	+	0.37	(0.36,0.392]	chr5	288981	50	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.3312	4.979525	5.62785	0.00387074	5.69775e-7	0.078873	4.16055e-5
chr17	514246	514346	8829455	0	-	0.54	(0.526,0.57]	chr17	842532	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	71	2	4.22745	4.979265	5.73108	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	108768470	108768570	250063	0	+	0.39	(0.36,0.392]	chr1	25318	80	INTRON	INTRON	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000486601.5:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	4.4918	4.979065	5.46633	4.36875e-6	1.31388e-11	2.58808e-4	1.98774e-9
chr6	56743504	56743604	4093347	0	-	0.4	(0.392,0.424]	chr6	373136	7	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000523967.5:ENST00000449297.6:ENST00000521821.1:ENST00000650917.1:ENST00000522538.5:ENST00000523817.1:ENST00000517937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	4.44207	4.97894	5.51581	5.58952e-6	1.07176e-6	3.2822e-4	7.36955e-5
chr8	144844719	144844814	5103947	0	+	0.4	(0.392,0.424]	chr8	457686	11	INTRON	INTRON	ZNF7	ENSG00000147789.16	ENST00000525266.5:ENST00000325217.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.44207	4.97894	5.51581	5.58952e-6	1.07176e-6	3.2822e-4	7.36955e-5
chr5	59741053	59741153	3479662	0	-	0.5	(0.49,0.526]	chr5	319265	1547	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.38975	4.97696	5.56417	9.92102e-4	1.40942e-7	0.0276375	1.1686e-5
chr5	137979159	137979259	3612759	0	-	0.5	(0.49,0.526]	chr5	327860	163	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.38975	4.97696	5.56417	9.92102e-4	1.40942e-7	0.0276375	1.1686e-5
chr1	161826338	161826438	318424	0	+	0.39	(0.36,0.392]	chr1	36088	48	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.65848	4.9767	5.29492	1.51392e-5	8.06613e-7	7.85619e-4	5.78931e-5
chr5	14801316	14801416	3423734	0	-	0.39	(0.36,0.392]	chr5	314923	132	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	4.65848	4.9767	5.29492	1.51392e-5	8.06613e-7	7.85619e-4	5.78931e-5
chr7	77547791	77547891	4440825	0	+	0.38	(0.36,0.392]	chr7	399533	16	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.65848	4.9767	5.29492	1.51392e-5	8.06613e-7	7.85619e-4	5.78931e-5
chr4	39753565	39753665	2608022	0	+	0.36	(0.32,0.36]	chr4	249777	74	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	53	2	4.70754	4.976545	5.24555	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	103560492	103560587	7918129	0	-	0.547368	(0.526,0.57]	chr14	730157	7	CDS	CDS:EXON_MRNA	BAG5	ENSG00000166170.12	ENST00000445922.2:ENST00000299204.6:ENST00000337322.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	4.84728	4.976235	5.10519	1.89233e-11	1e-12	2.79646e-9	1.72912e-10
chr1	40716813	40716913	120365	0	+	0.37	(0.36,0.392]	chr1	14049	36	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	3.67571	4.976065	6.27642	9.00428e-5	2.38946e-10	0.00381913	3.06702e-8
chr1	218311817	218311917	431690	0	+	0.39	(0.36,0.392]	chr1	46458	38	INTRON	INTRON	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr12	93440443	93440543	7236344	0	-	0.37	(0.36,0.392]	chr12	667201	157	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr17	43116864	43116961	8937061	0	-	0.360825	(0.36,0.392]	chr17	858970	7	INTRON	INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr17	80723975	80724075	8816131	0	+	0.39	(0.36,0.392]	chr17	840408	145	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000572733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr2	55314801	55314891	1451321	0	-	0.388889	(0.36,0.392]	chr2	150550	3	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000644512.1:ENST00000643375.1:ENST00000647401.1:ENST00000412148.6:ENST00000646285.1:ENST00000647396.1:ENST00000642563.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000643873.1:ENST00000647291.1:ENST00000644456.1:ENST00000645860.1:ENST00000426576.6:ENST00000456975.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000645485.1:ENST00000474059.2:ENST00000476903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr6	57561910	57562010	3801098	0	+	0.39	(0.36,0.392]	chr6	348686	239	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000550475.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr6	108571720	108571820	3845284	0	+	0.37	(0.36,0.392]	chr6	352132	95	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr6	150888680	150888780	3929948	0	+	0.39	(0.36,0.392]	chr6	357846	3	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr8	132796203	132796301	5093403	0	+	0.387755	(0.36,0.392]	chr8	455682	10	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395379.5:ENST00000395386.7:ENST00000485595.5:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000522580.5:ENST00000395390.6:ENST00000486199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.65673	4.975825	5.29492	7.48315e-4	1.51392e-5	0.0220209	7.85619e-4
chr1	180371532	180371632	814900	0	-	0.39	(0.36,0.392]	chr1	90631	446	INTRON	INTRON	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000496993.5:ENST00000475338.2:ENST00000367595.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr1	193164890	193164990	387565	0	+	0.38	(0.36,0.392]	chr1	41710	33	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr10	7330744	7330844	6044073	0	-	0.38	(0.36,0.392]	chr10	542590	444	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr3	183803521	183803614	2122006	0	+	0.387097	(0.36,0.392]	chr3	208022	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YEATS2	ENSG00000163872.16	ENST00000305135.10:ENST00000472593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr6	10729424	10729522	3706453	0	+	0.367347	(0.36,0.392]	chr6	337250	3	INTRON	INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr9	13134599	13134699	5572851	0	-	0.38	(0.36,0.392]	chr9	499829	8	EXON_MRNA	EXON_MRNA:INTRON	MPDZ	ENSG00000107186.17	ENST00000319217.12:ENST00000541718.5:ENST00000539508.5:ENST00000319198.10:ENST00000438511.5:ENST00000545857.5:ENST00000538841.5:ENST00000536827.5:ENST00000447879.6:ENST00000542806.5:ENST00000546205.5:ENST00000535169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.72821	4.975355	5.2225	6.09158e-4	2.06042e-5	0.0188826	0.00103061
chr2	182753221	182753319	1229412	0	+	0.285714	[0,0.32]	chr2	128897	2	INTRON	INTRON	DNAJC10	ENSG00000077232.19	ENST00000679526.1:ENST00000680258.1:ENST00000679491.1:ENST00000680667.1:ENST00000264065.12:ENST00000616986.5:ENST00000680480.1:ENST00000681873.1:ENST00000680060.1:ENST00000681139.1:ENST00000681146.1:ENST00000650903.2:ENST00000680484.1:ENST00000491074.6:ENST00000679884.1:ENST00000418559.6:ENST00000681122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	4.64799	4.97498	5.30197	2.00168e-6	8.33093e-10	1.30649e-4	9.89956e-8
chr16	21515946	21516045	8530811	0	-	0.464646	(0.459,0.49]	chr16	801519	133	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	40	2	4.75464	4.97484	5.19504	2.1191e-11	1.5089e-12	3.10804e-9	2.54947e-10
chr1	149087711	149087811	759210	0	-	0.34	(0.32,0.36]	chr1	82254	49	INTRON	INTRON	NBPF9	ENSG00000269713.8	ENST00000615421.4:ENST00000584027.9:ENST00000621645.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.32952	4.971385	5.61325	0.00388505	1.45077e-6	0.0816719	9.68953e-5
chr15	64200707	64200805	8212357	0	-	0.357143	(0.32,0.36]	chr15	761601	53	INTRON	INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000634302.1:ENST00000634722.1:ENST00000606793.3:ENST00000634909.1:ENST00000635414.1:ENST00000635230.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.32952	4.971385	5.61325	0.00388505	1.45077e-6	0.0816719	9.68953e-5
chr7	69660365	69660465	4407315	0	+	0.33	(0.32,0.36]	chr7	396948	166	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.32952	4.971385	5.61325	0.00388505	1.45077e-6	0.0816719	9.68953e-5
chr7	154047698	154047798	4586768	0	+	0.34	(0.32,0.36]	chr7	413484	1596	INTRON	INTRON	DPP6	ENSG00000130226.17	ENST00000404039.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.32952	4.971385	5.61325	0.00388505	1.45077e-6	0.0816719	9.68953e-5
chr19	11327478	11327578	9436380	0	-	0.53	(0.526,0.57]	chr19	925747	15	INTRON	INTRON	RAB3D	ENSG00000105514.8	ENST00000222120.8:ENST00000589655.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.84794	4.971295	5.09465	6.50622e-5	1.16684e-5	0.00284455	6.16746e-4
chrX	124056535	124056635	10218581	0	+	0.56	(0.526,0.57]	chrX	1017626	3	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.84794	4.971295	5.09465	6.50622e-5	1.16684e-5	0.00284455	6.16746e-4
chrX	150696042	150696140	10239867	0	+	0.540816	(0.526,0.57]	chrX	1019603	20	INTRON	INTRON	MTMR1	ENSG00000063601.17	ENST00000493995.6:ENST00000439546.6:ENST00000429965.6:ENST00000434699.6:ENST00000485376.5:ENST00000370390.7:ENST00000490316.6:ENST00000445323.7:ENST00000542156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.84794	4.971295	5.09465	6.50622e-5	1.16684e-5	0.00284455	6.16746e-4
chr1	29257104	29257204	93807	0	+	0.55	(0.526,0.57]	chr1	10192	13	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.90802	4.971164999999999	5.03431	4.81512e-5	1.64566e-5	0.00220626	8.48927e-4
chr3	179398255	179398353	2501783	0	-	0.530612	(0.526,0.57]	chr3	239377	23	UTR3	UTR3:EXON_MRNA	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.90802	4.971164999999999	5.03431	4.81512e-5	1.64566e-5	0.00220626	8.48927e-4
chr10	21583299	21583398	5811023	0	+	0.393939	(0.392,0.424]	chr10	522832	109	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.54701	4.9709	5.39479	0.00102713	4.26975e-6	0.0276375	2.57151e-4
chr10	121591023	121591123	6275183	0	-	0.41	(0.392,0.424]	chr10	561608	71	INTRON	INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683250.1:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10:ENST00000683678.1:ENST00000682400.1:ENST00000490349.5:ENST00000359354.6:ENST00000611527.1:ENST00000613324.4:ENST00000636922.1:ENST00000683035.1:ENST00000491111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	11	2	4.54701	4.9709	5.39479	0.00102713	4.26975e-6	0.0276375	2.57151e-4
chr15	55962789	55962889	8182137	0	-	0.42	(0.392,0.424]	chr15	758981	102	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000648451.1:ENST00000502612.5:ENST00000513957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.54701	4.9709	5.39479	0.00102713	4.26975e-6	0.0276375	2.57151e-4
chr2	135626426	135626525	1153739	0	+	0.40404	(0.392,0.424]	chr2	123236	33	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1:ENST00000480793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.54701	4.9709	5.39479	0.00102713	4.26975e-6	0.0276375	2.57151e-4
chr5	78053800	78053900	3509076	0	-	0.42	(0.392,0.424]	chr5	321287	94	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.54701	4.9709	5.39479	0.00102713	4.26975e-6	0.0276375	2.57151e-4
chr12	93413594	93413694	7236074	0	-	0.41	(0.392,0.424]	chr12	667195	19	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.61293	4.9703	5.32767	8.49057e-4	5.95442e-6	0.0240064	3.4453e-4
chr17	35695123	35695223	8703668	0	+	0.4	(0.392,0.424]	chr17	824597	119	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.61293	4.9703	5.32767	8.49057e-4	5.95442e-6	0.0240064	3.4453e-4
chr18	12993233	12993333	9065013	0	+	0.41	(0.392,0.424]	chr18	876075	14	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.61293	4.9703	5.32767	8.49057e-4	5.95442e-6	0.0240064	3.4453e-4
chr3	56636630	56636729	2290946	0	-	0.40404	(0.392,0.424]	chr3	224202	23	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000431842.6:ENST00000493960.6:ENST00000355628.9:ENST00000614531.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.61293	4.9703	5.32767	8.49057e-4	5.95442e-6	0.0240064	3.4453e-4
chr1	44460453	44460553	133100	0	+	0.35	(0.32,0.36]	chr1	16218	407	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.42963	4.96997	5.51031	0.00312289	2.41138e-6	0.0697855	1.53938e-4
chr22	35274782	35274881	9936902	0	+	0.353535	(0.32,0.36]	chr22	987288	88	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.42963	4.96997	5.51031	0.00312289	2.41138e-6	0.0697855	1.53938e-4
chr3	101690242	101690340	1941738	0	+	0.326531	(0.32,0.36]	chr3	195784	25	INTRON	INTRON	PDCL3P4	ENSG00000244119.2	ENST00000667844.1:ENST00000685383.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	10	2	4.42963	4.96997	5.51031	0.00312289	2.41138e-6	0.0697855	1.53938e-4
chr4	163794936	163795036	3072185	0	-	0.35	(0.32,0.36]	chr4	284865	937	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000274056.11:ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000510696.1:ENST00000503104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.42963	4.96997	5.51031	0.00312289	2.41138e-6	0.0697855	1.53938e-4
chr5	34931351	34931449	3145829	0	+	0.326531	(0.32,0.36]	chr5	290526	6	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.42963	4.96997	5.51031	0.00312289	2.41138e-6	0.0697855	1.53938e-4
chr12	123174987	123175087	7311952	0	-	0.43	(0.424,0.459]	chr12	675335	78	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000606321.1:ENST00000541823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	4.11799	4.96972	5.82145	1.92567e-8	5.78925e-9	1.85307e-6	6.09992e-7
chr4	41482949	41483049	2611516	0	+	0.44	(0.424,0.459]	chr4	250078	289	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	4.11572	4.968584999999999	5.82145	5.35731e-7	1.92567e-8	3.93507e-5	1.85307e-6
chr7	641140	641240	4602131	0	-	0.62	(0.57,0.629]	chr7	414443	333	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.28422	4.9685749999999995	5.65293	0.00145677	2.31977e-8	0.0382827	2.19827e-6
chr1	205730619	205730718	846139	0	-	0.525253	(0.49,0.526]	chr1	94185	6	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	4.88296	4.968445	5.05393	8.97943e-10	9.44137e-11	1.06516e-7	1.27331e-8
chrX	106978079	106978139	10400141	0	-	0.416667	(0.392,0.424]	chrX	1032087	1	CDS	CDS:EXON_MRNA:INTRON	MORC4	ENSG00000133131.15	ENST00000604604.1:ENST00000355610.9:ENST00000255495.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.25372	4.967975	5.68223	2.90267e-5	1.931e-7	0.00141183	1.56398e-5
chr5	173004390	173004490	3393383	0	+	0.5	(0.49,0.526]	chr5	311332	92	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	4.29103	4.967905	5.64478	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	8397747	8397846	507568	0	-	0.424242	(0.392,0.424]	chr1	54828	314	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000476556.5:ENST00000656437.1:ENST00000488215.5:ENST00000460659.5:ENST00000492766.5:ENST00000465125.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	3.62464	4.967115	6.30959	1.11057e-4	3.72697e-11	0.00448562	5.32557e-9
chr11	78128267	78128354	6662350	0	-	0.448276	(0.424,0.459]	chr11	611002	1	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.74933	4.9666049999999995	5.18388	1.21594e-5	9.96009e-8	6.58699e-4	8.4812e-6
chr5	21387909	21388009	3133378	0	+	0.34	(0.32,0.36]	chr5	289670	456	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	49	2	4.83903	4.96585	5.09267	9.64646e-11	1e-12	1.30287e-8	1.72912e-10
chr1	55214389	55214489	630054	0	-	0.57	(0.526,0.57]	chr1	70414	2	SS5_PROX	SS5_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.67324	4.96488	6.25652	2.18967e-7	4.4752e-12	1.72699e-5	7.16361e-10
chr19	13813464	13813564	9294898	0	+	0.46	(0.459,0.49]	chr19	898863	3	SS5_PROX	SS5_PROX:INTRON	ZSWIM4	ENSG00000132003.10	ENST00000590508.6:ENST00000254323.6	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.32488	4.96416	6.60344	1.69572e-5	1e-12	8.71289e-4	1.72912e-10
chr16	78644791	78644891	8443072	0	+	0.41	(0.392,0.424]	chr16	790818	87	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.53319	4.963990000000001	5.39479	4.26975e-6	1.61757e-6	2.57151e-4	1.08646e-4
chr7	70496730	70496830	4415695	0	+	0.54	(0.526,0.57]	chr7	397021	590	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.44169	4.961685	5.48168	8.21639e-4	2.6732e-7	0.0238903	2.09843e-5
chr10	121550190	121550290	6274767	0	-	0.5	(0.49,0.526]	chr10	561586	111	INTRON	INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000683250.1:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10:ENST00000683678.1:ENST00000682400.1:ENST00000490349.5:ENST00000359354.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.64127	4.961345	5.28142	2.4929e-4	2.46593e-6	0.0089494	1.54892e-4
chr17	75386289	75386389	9010408	0	-	0.51	(0.49,0.526]	chr17	869137	531	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.64127	4.961345	5.28142	2.4929e-4	2.46593e-6	0.0089494	1.54892e-4
chr4	41571363	41571463	2612405	0	+	0.5	(0.49,0.526]	chr4	250104	196	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1:ENST00000503057.6:ENST00000511496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.64127	4.961345	5.28142	2.4929e-4	2.46593e-6	0.0089494	1.54892e-4
chr6	28232647	28232733	3750445	0	+	0.511628	(0.49,0.526]	chr6	340095	2	CDS	CDS:UTR3:EXON_MRNA	ZSCAN9	ENSG00000137185.13	ENST00000252207.10:ENST00000425468.6:ENST00000531979.5:ENST00000647743.1:ENST00000527844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.64127	4.961345	5.28142	2.4929e-4	2.46593e-6	0.0089494	1.54892e-4
chr9	36216779	36216876	5612200	0	-	0.515464	(0.49,0.526]	chr9	503355	25	UTR3	UTR3:EXON_MRNA	GNE	ENSG00000159921.20	ENST00000396594.8:ENST00000642385.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.64127	4.961345	5.28142	2.4929e-4	2.46593e-6	0.0089494	1.54892e-4
chr3	136396648	136396748	2445148	0	-	0.52	(0.49,0.526]	chr3	234778	185	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.71489	4.96086	5.20683	1.81396e-4	3.9703e-6	0.0069054	2.39291e-4
chr16	69428663	69428761	8421689	0	+	0.367347	(0.36,0.392]	chr16	788899	34	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	4.65673	4.95945	5.26217	7.48315e-4	4.53146e-10	0.0220209	5.61917e-8
chr22	43976183	43976283	9957033	0	+	0.41	(0.392,0.424]	chr22	990966	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAMM50	ENSG00000100347.15	ENST00000350028.5:ENST00000474323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	247	2	4.59321	4.958325	5.32344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	43845938	43846037	7960364	0	+	0.353535	(0.32,0.36]	chr15	736516	15	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	28	164	2	4.88624	4.957345	5.02845	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	206528307	206528407	414617	0	+	0.36	(0.32,0.36]	chr1	44710	94	INTRON	INTRON	RASSF5	ENSG00000266094.8	ENST00000579436.7:ENST00000580449.5:ENST00000581503.6:ENST00000636182.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.11199	4.9571	5.80221	2.44546e-6	2.13657e-7	1.55199e-4	1.69216e-5
chr14	102144268	102144368	7757224	0	+	0.49	(0.459,0.49]	chr14	712301	37	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.51255	4.95662	5.40069	6.3564e-4	1.15324e-6	0.0193151	7.95154e-5
chr2	10819937	10820020	1380061	0	-	0.46988	(0.459,0.49]	chr2	142977	2	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000404824.2:ENST00000458536.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.51255	4.95662	5.40069	6.3564e-4	1.15324e-6	0.0193151	7.95154e-5
chr10	21582600	21582700	5811016	0	+	0.46	(0.459,0.49]	chr10	522832	102	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.57976	4.955970000000001	5.33218	4.98571e-4	1.78412e-6	0.0160179	1.1709e-4
chr17	76754304	76754404	8804296	0	+	0.48	(0.459,0.49]	chr17	838710	1	SS5_PROX	SS5_PROX:INTRON	MFSD11	ENSG00000092931.12	ENST00000586622.5:ENST00000621483.4:ENST00000355954.7:ENST00000588460.6:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000685175.1:ENST00000588670.5:ENST00000588768.5:ENST00000585584.5:ENST00000585958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.57976	4.955970000000001	5.33218	4.98571e-4	1.78412e-6	0.0160179	1.1709e-4
chr6	161225242	161225342	4249630	0	-	0.48	(0.459,0.49]	chr6	386532	585	INTRON	INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.57976	4.955970000000001	5.33218	4.98571e-4	1.78412e-6	0.0160179	1.1709e-4
chr9	92076097	92076197	5660378	0	-	0.48	(0.459,0.49]	chr9	506600	53	INTRON	INTRON	SPTLC1	ENSG00000090054.16	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000689261.1:ENST00000690095.1:ENST00000646534.1:ENST00000262554.7:ENST00000687427.1:ENST00000690139.1:ENST00000687972.1:ENST00000689401.1:ENST00000686600.1:ENST00000686799.1:ENST00000644140.1:ENST00000692458.1:ENST00000687817.1:ENST00000693147.1:ENST00000482632.6:ENST00000689423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.57976	4.955970000000001	5.33218	4.98571e-4	1.78412e-6	0.0160179	1.1709e-4
chr2	190210394	190210492	1649525	0	-	0.387755	(0.36,0.392]	chr2	169557	11	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000486981.1:ENST00000410045.5:ENST00000416732.5:ENST00000489147.1:ENST00000409820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	3.96418	4.954055	5.94393	3.41715e-7	1.58245e-8	2.60631e-5	1.55285e-6
chr14	31200278	31200377	7794776	0	-	0.464646	(0.459,0.49]	chr14	717794	142	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1:ENST00000554471.3:ENST00000556224.6:ENST00000553616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	4.29277	4.953965	5.61516	9.49302e-8	1.1232e-8	8.06088e-6	1.13018e-6
chr12	20577967	20578067	6844147	0	+	0.46	(0.459,0.49]	chr12	625053	54	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	216	2	4.53003	4.952935	5.37584	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	45951693	45951793	138671	0	+	0.31	[0,0.32]	chr1	16894	338	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.68069	4.9524	5.22411	5.05568e-9	1.49849e-9	5.38161e-7	1.73006e-7
chr11	107343713	107343813	6731981	0	-	0.31	[0,0.32]	chr11	614162	66	INTRON	INTRON	CWF19L2	ENSG00000152404.16	ENST00000282251.10:ENST00000431778.5:ENST00000532251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	4.60084	4.951404999999999	5.30197	9.02357e-9	8.33093e-10	9.29849e-7	9.89956e-8
chr15	63773995	63774094	8211083	0	-	0.444444	(0.424,0.459]	chr15	761462	95	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.64041	4.95125	6.26209	0.00115507	3.1274e-11	0.0316008	4.50988e-9
chr5	178607403	178607497	3676391	0	-	0.446809	(0.424,0.459]	chr5	334648	12	INTRON	INTRON	CLK4	ENSG00000113240.14	ENST00000520878.5:ENST00000316308.9:ENST00000522136.5:ENST00000521621.5:ENST00000519132.5:ENST00000519583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.64041	4.95125	6.26209	0.00115507	3.1274e-11	0.0316008	4.50988e-9
chr7	158638199	158638299	4911261	0	-	0.41	(0.392,0.424]	chr7	438803	61	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.15239	4.951055	5.74972	0.00572894	1.25981e-7	0.105396	1.05791e-5
chr13	42281299	42281398	7367280	0	+	0.414141	(0.392,0.424]	chr13	680861	87	INTRON	INTRON	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.21741	4.94982	5.68223	0.00496616	1.931e-7	0.0964485	1.56398e-5
chr18	12321639	12321738	9063229	0	+	0.414141	(0.392,0.424]	chr18	875830	5	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.21741	4.94982	5.68223	0.00496616	1.931e-7	0.0964485	1.56398e-5
chr19	18367137	18367236	9306411	0	+	0.414141	(0.392,0.424]	chr19	901500	37	UTR3	UTR3:EXON_MRNA:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.21741	4.94982	5.68223	0.00496616	1.931e-7	0.0964485	1.56398e-5
chr6	57423404	57423503	3799709	0	+	0.414141	(0.392,0.424]	chr6	348660	208	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000490313.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.21741	4.94982	5.68223	0.00496616	1.931e-7	0.0964485	1.56398e-5
chr13	49129145	49129244	7379850	0	+	0.313131	[0,0.32]	chr13	681807	141	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.31876	4.94966	5.58056	5.15904e-5	1.7046e-6	0.00235512	1.13343e-4
chr3	138535214	138535312	2450160	0	-	0.306122	[0,0.32]	chr3	235172	23	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	4.31876	4.94966	5.58056	5.15904e-5	1.7046e-6	0.00235512	1.13343e-4
chr15	20488498	20488597	8105416	0	-	0.464646	(0.459,0.49]	chr15	749546	46	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	21	2	4.73219	4.949455	5.16672	7.74288e-6	3.0068e-8	4.39068e-4	2.8316e-6
chr17	857001	857101	8832576	0	-	0.46	(0.459,0.49]	chr17	842919	306	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575801.5:ENST00000537628.6:ENST00000575455.5:ENST00000577098.5:ENST00000571338.1:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	4.73219	4.949455	5.16672	7.74288e-6	3.0068e-8	4.39068e-4	2.8316e-6
chr12	50538222	50538322	6908580	0	+	0.43	(0.424,0.459]	chr12	629879	326	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	69	2	4.45069	4.94927	5.44785	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	111757922	111758020	6742372	0	-	0.408163	(0.392,0.424]	chr11	614939	21	INTRON	INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	4.71951	4.948805	5.1781	2.48959e-5	1.28627e-10	0.00122627	1.72632e-8
chr17	78203741	78203840	8810258	0	+	0.606061	(0.57,0.629]	chr17	839363	11	EXON_MRNA	EXON_MRNA:INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000586542.5:ENST00000587750.5:ENST00000589664.5:ENST00000585419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	4.39204	4.94772	5.5034	2.55068e-7	1.59473e-7	2.02856e-5	1.31413e-5
chr17	43166256	43166356	8937565	0	-	0.53	(0.526,0.57]	chr17	859008	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	BRCA1:ENSG00000267002	ENSG00000012048.23:ENSG00000267002.4	ENST00000634433.1:ENST00000635600.1:ENST00000642336.1:ENST00000590740.2:ENST00000653081.1:ENST00000634503.1:ENST00000634994.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	122	2	4.61046	4.9471	5.28374	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	161837585	161837685	318537	0	+	0.27	[0,0.32]	chr1	36088	161	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	4.24175	4.94647	5.65119	6.90565e-5	1.20332e-6	0.00300464	8.2089e-5
chr18	50937499	50937597	9121950	0	+	0.306122	[0,0.32]	chr18	880186	19	INTRON	INTRON	ME2	ENSG00000082212.13	ENST00000640530.1:ENST00000640967.1:ENST00000321341.11:ENST00000638937.1:ENST00000382927.3:ENST00000639850.1:ENST00000639665.1:ENST00000639398.1:ENST00000639115.1:ENST00000639255.1:ENST00000638410.1:ENST00000640965.1:ENST00000639612.1:ENST00000585680.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.24175	4.94647	5.65119	6.90565e-5	1.20332e-6	0.00300464	8.2089e-5
chr7	55070438	55070538	4390393	0	+	0.32	[0,0.32]	chr7	395429	265	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	4.45912	4.946345	5.43357	1.18389e-5	8.40147e-6	6.49715e-4	4.71048e-4
chr18	13707857	13707957	9185059	0	-	0.39	(0.36,0.392]	chr18	885209	98	INTRON	INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	4.2635	4.945675	5.62785	5.69775e-7	4.58367e-7	4.16055e-5	3.4135e-5
chr11	90209849	90209942	6707830	0	-	0.354839	(0.32,0.36]	chr11	612748	5	INTRON	INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000529987.5:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	4.85094	4.944215	5.03749	9.65678e-5	2.73185e-7	0.00399919	2.11622e-5
chr2	58114106	58114205	1042114	0	+	0.353535	(0.32,0.36]	chr2	111241	240	INTRON	INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	4.85094	4.944215	5.03749	9.65678e-5	2.73185e-7	0.00399919	2.11622e-5
chrX	24169222	24169322	10104574	0	+	0.45	(0.424,0.459]	chrX	1007440	70	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	4.51855	4.943695	5.36884	8.67885e-7	6.68643e-12	6.19626e-5	1.046e-9
chr9	97999677	97999777	5446027	0	+	0.34	(0.32,0.36]	chr9	486175	6	INTRON	INTRON	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.02125	4.9435400000000005	5.86583	3.53532e-4	6.04906e-8	0.0122629	5.40424e-6
chr7	7986358	7986458	4307925	0	+	0.63	(0.629,1]	chr7	390310	155	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000492797.5:ENST00000460897.1:ENST00000470583.5:ENST00000474269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.33899	4.94348	5.54797	8.51164e-4	5.19015e-8	0.0245129	4.6354e-6
chr1	109416362	109416462	721925	0	-	0.55	(0.526,0.57]	chr1	77207	6	INTRON	INTRON	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	4.70872	4.941725	5.17473	5.09959e-12	1e-12	8.11085e-10	1.72912e-10
chr11	123181317	123181417	6769010	0	-	0.56	(0.526,0.57]	chr11	617747	830	INTRON	INTRON	CLMP	ENSG00000166250.12	ENST00000448775.4	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	4.9229	4.941235000000001	4.95957	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	51843685	51843742	2617855	0	+	0.631579	(0.629,1]	chr4	250839	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000511675.5:ENST00000381441.7:ENST00000506673.5:ENST00000504113.5:ENST00000502930.5:ENST00000334635.10:ENST00000507741.5:ENST00000513800.5:ENST00000477560.5:ENST00000509068.5:ENST00000451288.6:ENST00000505403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.52269	4.94121	5.35973	3.10525e-4	4.20109e-7	0.0106515	3.14314e-5
chr3	152350214	152350314	2044313	0	+	0.31	[0,0.32]	chr3	204355	146	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	4.16702	4.9399	5.71278	3.88196e-8	1e-12	3.55767e-6	1.72912e-10
chr3	119430219	119430317	2398981	0	-	0.397959	(0.392,0.424]	chr3	229807	14	UTR3	UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.47186	4.939885	6.40791	0.00366403	6.88871e-12	0.0766409	1.07164e-9
chr15	56970667	56970766	7983828	0	+	0.272727	[0,0.32]	chr15	738460	492	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	3.79131	4.9386849999999995	6.08606	3.97652e-7	5.85315e-9	2.98972e-5	6.18098e-7
chr17	41896021	41896119	8930205	0	-	0.530612	(0.526,0.57]	chr17	857458	25	INTRON	INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	4.70872	4.93834	5.16796	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	24762507	24762607	77186	0	+	0.49	(0.459,0.49]	chr1	7922	165	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	111	2	4.81365	4.9376549999999995	5.06166	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	111452760	111452860	4818234	0	-	0.31	[0,0.32]	chr7	431941	600	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	4.53638	4.937305	5.33823	8.41855e-6	2.44269e-10	4.71048e-4	3.11038e-8
chr15	101220507	101220607	8291512	0	-	0.58	(0.57,0.629]	chr15	769715	311	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	4.05192	4.935435	5.81895	8.80882e-6	3.22847e-9	4.93044e-4	3.54085e-7
chr3	56665568	56665663	2291247	0	-	0.557895	(0.526,0.57]	chr3	224256	14	INTRON	INTRON	TASOR	ENSG00000163946.14	ENST00000683822.1:ENST00000493960.6:ENST00000355628.9:ENST00000478052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.67101	4.935169999999999	5.19933	4.16513e-6	2.77771e-8	2.48371e-4	2.62893e-6
chr1	117461308	117461407	272259	0	+	0.393939	(0.392,0.424]	chr1	28109	3	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.75797	4.93461	5.11125	3.31137e-5	2.01084e-7	0.00159224	1.60882e-5
chr15	82373858	82373958	8060696	0	+	0.42	(0.392,0.424]	chr15	744939	181	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	16	2	4.75797	4.93461	5.11125	3.31137e-5	2.01084e-7	0.00159224	1.60882e-5
chr4	41952663	41952762	2613922	0	+	0.414141	(0.392,0.424]	chr4	250339	29	INTRON	INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.75797	4.93461	5.11125	3.31137e-5	2.01084e-7	0.00159224	1.60882e-5
chr9	95015592	95015692	5437862	0	+	0.41	(0.392,0.424]	chr9	485313	95	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000496567.5:ENST00000463372.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	4.03703	4.934225	5.83142	1.48653e-4	3.48252e-8	0.00578975	3.23132e-6
chr1	11986939	11987037	34121	0	+	0.357143	(0.32,0.36]	chr1	3901	40	INTRON	INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr1	70245497	70245588	195975	0	+	0.340659	(0.32,0.36]	chr1	21073	3	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000370949.2:ENST00000395136.7:ENST00000484162.5:ENST00000463859.6:ENST00000690370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr1	237561473	237561573	469783	0	+	0.35	(0.32,0.36]	chr1	50355	104	INTRON	INTRON	RYR2	ENSG00000198626.18	ENST00000366574.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr12	19647449	19647549	6841313	0	+	0.33	(0.32,0.36]	chr12	625034	943	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr17	28612184	28612261	8898645	0	-	0.337662	(0.32,0.36]	chr17	852371	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000258472:RSKR	ENSG00000258472.9:ENSG00000167524.16	ENST00000481916.6:ENST00000531839.5:ENST00000577790.2:ENST00000584196.1:ENST00000301037.11:ENST00000494272.6:ENST00000581199.5:ENST00000526073.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr4	13429674	13429774	2840382	0	-	0.34	(0.32,0.36]	chr4	268987	477	INTRON	INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr4	139141895	139141995	3014500	0	-	0.34	(0.32,0.36]	chr4	282147	20	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000511184.5:ENST00000511006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr6	16759556	16759656	4012550	0	-	0.33	(0.32,0.36]	chr6	363048	1	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000675689.1:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr7	131025657	131025757	4848376	0	-	0.34	(0.32,0.36]	chr7	434475	155	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.7265	4.933035	5.13957	6.12159e-4	6.71414e-5	0.0189985	0.00291649
chr1	200750052	200750152	394126	0	+	0.42	(0.392,0.424]	chr1	42304	97	INTRON	INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.7075	4.93277	6.15804	9.40427e-4	6.43194e-10	0.0266969	7.74888e-8
chr1	21137897	21137997	537375	0	-	0.35	(0.32,0.36]	chr1	59083	249	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr1	200838512	200838611	395017	0	+	0.333333	(0.32,0.36]	chr1	42339	53	INTRON	INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6:ENST00000447701.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr17	63808479	63808559	8776551	0	+	0.325	(0.32,0.36]	chr17	835166	2	SS3_PROX	SS3_PROX:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr20	13470133	13470233	9705357	0	-	0.36	(0.32,0.36]	chr20	960533	346	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr4	2028230	2028330	2818856	0	-	0.36	(0.32,0.36]	chr4	267100	43	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000455762.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr6	110130322	110130422	4161609	0	-	0.33	(0.32,0.36]	chr6	379076	23	INTRON	INTRON	WASF1	ENSG00000112290.13	ENST00000359451.6:ENST00000392588.5:ENST00000392586.5:ENST00000392587.6:ENST00000392589.6:ENST00000444391.5:ENST00000368938.5:ENST00000265601.7:ENST00000419252.1:ENST00000447287.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr7	105342760	105342860	4799835	0	-	0.35	(0.32,0.36]	chr7	431095	358	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chrX	2322654	2322754	10251872	0	-	0.36	(0.32,0.36]	chrX	1021533	307	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chrX	18272901	18273001	10286111	0	-	0.33	(0.32,0.36]	chrX	1023101	67	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.82783	4.93266	5.03749	4.57616e-4	9.65678e-5	0.0150584	0.00399919
chr12	4539937	4540034	6808128	0	+	0.43299	(0.424,0.459]	chr12	621218	6	INTRON	INTRON	RAD51AP1	ENSG00000111247.15	ENST00000536346.5:ENST00000536886.5:ENST00000398012.7:ENST00000544110.5:ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000538817.5:ENST00000544927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.40599	4.93075	5.45551	0.00154565	1.50668e-6	0.0389999	9.96778e-5
chr6	128374478	128374578	4191749	0	-	0.44	(0.424,0.459]	chr6	381428	518	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.40599	4.93075	5.45551	0.00154565	1.50668e-6	0.0389999	9.96778e-5
chr17	28720704	28720797	8685344	0	+	0.494624	(0.49,0.526]	chr17	822051	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	182	1805	2	4.89653	4.930565	4.9646	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	39275829	39275928	7608130	0	+	0.343434	(0.32,0.36]	chr14	700012	80	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	3.70951	4.93017	6.15083	0.00201951	1.52443e-9	0.0510613	1.74447e-7
chr22	29550037	29550132	10009979	0	-	0.452632	(0.424,0.459]	chr22	997011	5	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000397873.6:ENST00000440771.5:ENST00000428374.5:ENST00000414902.5:ENST00000418021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.48802	4.929785	5.37155	0.00121831	2.42251e-6	0.0326347	1.53938e-4
chr22	35889466	35889566	10027217	0	-	0.44	(0.424,0.459]	chr22	998794	490	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.48802	4.929785	5.37155	0.00121831	2.42251e-6	0.0326347	1.53938e-4
chr7	114509824	114509924	4514598	0	+	0.39	(0.36,0.392]	chr7	406711	102	INTRON	INTRON	FOXP2	ENSG00000128573.27	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000634411.1:ENST00000635109.1:ENST00000634623.1:ENST00000393494.6:ENST00000350908.9:ENST00000408937.7:ENST00000393491.7:ENST00000403559.8:ENST00000393498.6:ENST00000393495.7:ENST00000459666.5:ENST00000378237.7:ENST00000393489.8:ENST00000635534.1:ENST00000360232.8:ENST00000452963.6:ENST00000390668.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	4.4984	4.929545	5.36069	9.1492e-11	1e-12	1.23546e-8	1.73382e-10
chr18	170813	170912	9037239	0	+	0.545455	(0.526,0.57]	chr18	873765	36	INTRON	INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	4.59829	4.929080000000001	5.25987	2.82947e-6	4.99738e-8	1.75466e-4	4.53531e-6
chr17	19446753	19446852	8892334	0	-	0.727273	(0.629,1]	chr17	851444	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P46	ENSG00000189343.7	ENST00000458332.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.83202	4.926685	5.02135	4.13761e-5	9.70346e-6	0.00192437	5.37523e-4
chr3	129780712	129780812	2434522	0	-	0.25	[0,0.32]	chr3	233455	921	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.27127	4.925915	5.58056	1.7046e-6	1.03327e-6	1.13343e-4	7.23599e-5
chr13	106492939	106493039	7562500	0	-	0.58	(0.57,0.629]	chr13	695586	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EFNB2	ENSG00000125266.8	ENST00000646441.1:ENST00000643990.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.46827	4.924515	5.38076	5.2773e-4	5.85803e-7	0.0167673	4.27724e-5
chr19	40343174	40343274	9498008	0	-	0.58	(0.57,0.629]	chr19	935649	3	SS5_PROX	SS5_PROX:INTRON	C19orf47	ENSG00000160392.14	ENST00000582783.5:ENST00000683109.1:ENST00000392035.6:ENST00000582006.5:ENST00000580606.5:ENST00000580977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.46827	4.924515	5.38076	5.2773e-4	5.85803e-7	0.0167673	4.27724e-5
chr6	7135750	7135850	3701067	0	+	0.39	(0.36,0.392]	chr6	336732	267	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.83113	4.92412	6.01711	6.41601e-4	9.48035e-9	0.0193935	9.6816e-7
chr19	51992782	51992879	9530981	0	-	0.381443	(0.36,0.392]	chr19	942206	16	UTR3	UTR3:EXON_MRNA	ZNF615	ENSG00000197619.15	ENST00000598071.6:ENST00000602063.5:ENST00000594083.5:ENST00000599177.5:ENST00000376716.9:ENST00000391795.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	117	2	4.38842	4.92357	5.45872	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	87044966	87045065	2681643	0	+	0.383838	(0.36,0.392]	chr4	255323	372	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	4.80788	4.923545	5.03921	9.59768e-5	1.47653e-7	0.00399331	1.22253e-5
chr1	161889744	161889844	319066	0	+	0.25	[0,0.32]	chr1	36135	13	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	3.83585	4.9216050000000005	6.00736	4.6269e-5	2.47801e-8	0.00212902	2.36756e-6
chr4	166019837	166019937	2784125	0	+	0.28	[0,0.32]	chr4	263945	49	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000513213.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	4.79564	4.918975	5.04231	5.01883e-4	3.40623e-8	0.0161742	3.14246e-6
chr15	78508269	78508367	8048433	0	+	0.428571	(0.424,0.459]	chr15	743934	2	INTRON	INTRON	HYKK	ENSG00000188266.14	ENST00000408962.6:ENST00000388988.9:ENST00000566289.5:ENST00000566332.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	4.46516	4.918355	5.37155	2.42251e-6	2.35249e-6	1.53938e-4	1.51159e-4
chr15	68797647	68797747	8226309	0	-	0.41	(0.392,0.424]	chr15	763293	55	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	4.89327	4.91723	4.94119	3.77123e-8	1.23024e-8	3.4456e-6	1.23695e-6
chr1	198316014	198316114	391194	0	+	0.37	(0.36,0.392]	chr1	42036	184	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	4.80788	4.916085	5.02429	1.47653e-7	1.54207e-8	1.22253e-5	1.51982e-6
chr1	35818038	35818136	105647	0	+	0.306122	[0,0.32]	chr1	11977	6	INTRON	INTRON	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.06239	4.915915	5.76944	3.10398e-4	2.56854e-7	0.0109114	2.02856e-5
chr7	117081749	117081849	4524285	0	+	0.29	[0,0.32]	chr7	407317	47	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000434836.5:ENST00000465133.5:ENST00000477742.5:ENST00000462544.1:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	4.06239	4.915915	5.76944	3.10398e-4	2.56854e-7	0.0109114	2.02856e-5
chr21	44035816	44035915	9825423	0	+	0.272727	[0,0.32]	chr21	974445	33	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.39782	4.9156949999999995	5.43357	0.00334699	8.40147e-6	0.0734189	4.71048e-4
chr3	119953826	119953926	2401197	0	-	0.32	[0,0.32]	chr3	230125	42	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678787.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677128.1:ENST00000678608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.39782	4.9156949999999995	5.43357	0.00334699	8.40147e-6	0.0734189	4.71048e-4
chr3	12840429	12840525	2176538	0	-	0.53125	(0.526,0.57]	chr3	212661	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	202	2	4.85962	4.915255	4.97089	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	123266636	123266736	5725866	0	-	0.52	(0.49,0.526]	chr9	513514	293	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	4.26631	4.91524	5.56417	2.32598e-6	1.40942e-7	1.50793e-4	1.1686e-5
chr12	88508236	88508336	7229057	0	-	0.31	[0,0.32]	chr12	666552	7	INTRON	INTRON	KITLG	ENSG00000049130.16	ENST00000347404.10:ENST00000644744.1:ENST00000378535.4:ENST00000646633.1:ENST00000357116.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr15	50340786	50340886	8164536	0	-	0.25	[0,0.32]	chr15	756951	136	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr17	59604536	59604632	8756229	0	+	0.302083	[0,0.32]	chr17	833478	14	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DHX40	ENSG00000108406.10	ENST00000251241.9:ENST00000425628.7:ENST00000578204.1:ENST00000577549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr2	60937859	60937954	1455389	0	-	0.231579	[0,0.32]	chr2	151140	12	EXON_PSEUDO	EXON_PSEUDO	NONOP2	ENSG00000237522.1	ENST00000414613.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr7	148881105	148881205	4883656	0	-	0.28	[0,0.32]	chr7	437021	99	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr9	5757951	5758050	5328343	0	+	0.292929	[0,0.32]	chr9	476912	1	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chrX	107147542	107147642	10401202	0	-	0.3	[0,0.32]	chrX	1032183	4	SS5_PROX	SS5_PROX:INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.46657	4.91488	5.36319	0.00288167	1.13263e-5	0.0662445	6.25152e-4
chr12	31587986	31588086	7136384	0	-	0.44	(0.424,0.459]	chr12	655398	466	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	3.80014	4.91481	6.02948	3.54639e-4	1.8912e-9	0.0120332	2.1436e-7
chr2	39055023	39055123	1423957	0	-	0.36	(0.32,0.36]	chr2	148226	2	SS3_PROX	SS3_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000688189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	4.31864	4.9144749999999995	5.51031	2.41138e-6	5.41613e-9	1.53938e-4	5.73495e-7
chr2	241766709	241766809	1366076	0	+	0.66	(0.629,1]	chr2	141380	103	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.74169	4.914135	5.08658	7.88558e-5	5.52146e-6	0.00339056	3.23814e-4
chr8	42287436	42287535	4975705	0	+	0.666667	(0.629,1]	chr8	446284	149	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.74169	4.914135	5.08658	7.88558e-5	5.52146e-6	0.00339056	3.23814e-4
chr15	34199752	34199840	8124470	0	-	0.465909	(0.459,0.49]	chr15	751502	3	UTR5	UTR5:EXON_MRNA:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	4.0895	4.91387	5.73824	1.7943e-7	2.1921e-8	1.45035e-5	2.0899e-6
chr11	46964839	46964939	6391477	0	+	0.48	(0.459,0.49]	chr11	572741	163	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000522712.6:ENST00000527234.5:ENST00000531648.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	4.4955	4.91384	5.33218	1.78412e-6	5.33756e-7	1.1709e-4	3.92587e-5
chr12	64619642	64619742	6938069	0	+	0.48	(0.459,0.49]	chr12	635121	81	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	4.4955	4.91384	5.33218	1.78412e-6	5.33756e-7	1.1709e-4	3.92587e-5
chr13	27163290	27163390	7471758	0	-	0.47	(0.459,0.49]	chr13	688380	463	INTRON	INTRON	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.4955	4.91384	5.33218	1.78412e-6	5.33756e-7	1.1709e-4	3.92587e-5
chr21	31729269	31729369	9855728	0	-	0.47	(0.459,0.49]	chr21	978079	226	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	4.4955	4.91384	5.33218	1.78412e-6	5.33756e-7	1.1709e-4	3.92587e-5
chrX	19833725	19833825	10290928	0	-	0.47	(0.459,0.49]	chrX	1023468	341	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.21222	4.913690000000001	5.61516	9.25181e-6	9.49302e-8	5.14007e-4	8.06088e-6
chr5	5426578	5426678	3112283	0	+	0.44	(0.424,0.459]	chr5	288326	32	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9:ENST00000505464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	4.63564	4.9129950000000004	5.19035	1.67757e-10	1.40003e-10	2.18199e-8	1.85644e-8
chr12	82411219	82411319	6980592	0	+	0.32	[0,0.32]	chr12	637833	77	INTRON	INTRON	METTL25	ENSG00000127720.8	ENST00000248306.8:ENST00000547357.5:ENST00000550298.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.98571	4.912974999999999	5.84024	3.95466e-4	1.72569e-7	0.0132556	1.40017e-5
chr1	29180648	29180747	556446	0	-	0.434343	(0.424,0.459]	chr1	61816	73	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	48	2	4.37807	4.91296	5.44785	6.38236e-11	1e-12	8.83344e-9	1.73382e-10
chr18	24141726	24141822	9084861	0	+	0.458333	(0.424,0.459]	chr18	877975	11	INTRON	INTRON	CABYR	ENSG00000154040.21	ENST00000627314.1:ENST00000399481.6:ENST00000327201.10:ENST00000463087.5:ENST00000399496.8:ENST00000486759.6:ENST00000581872.5:ENST00000585037.5:ENST00000584752.5:ENST00000579956.5:ENST00000577705.1:ENST00000415309.6:ENST00000621648.4:ENST00000581397.5:ENST00000399499.5:ENST00000579102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	4.20361	4.912695	5.62178	1.79381e-5	2.83203e-7	9.13813e-4	2.17914e-5
chr5	75525435	75525535	3218405	0	+	0.32	[0,0.32]	chr5	297298	121	INTRON	INTRON	POLK	ENSG00000122008.15	ENST00000241436.8:ENST00000503479.6:ENST00000506928.5:ENST00000510815.6:ENST00000505774.5:ENST00000514296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	4.4854	4.91141	5.33742	2.41197e-10	1e-12	3.0924e-8	1.72912e-10
chr11	48006206	48006306	6395249	0	+	0.56	(0.526,0.57]	chr11	573261	248	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	4.0435	4.91113	5.77876	8.75788e-8	9.84906e-9	7.57468e-6	1.00136e-6
chr1	162671044	162671143	321180	0	+	0.50505	(0.49,0.526]	chr1	36312	153	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000671979.1:ENST00000415555.5:ENST00000672207.1:ENST00000673239.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.38975	4.90973	5.42971	9.92102e-4	5.89334e-7	0.0276375	4.28084e-5
chr2	64565267	64565367	1054454	0	+	0.5	(0.49,0.526]	chr2	112275	115	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000695868.1:ENST00000498706.5:ENST00000409183.5:ENST00000487769.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.38975	4.90973	5.42971	9.92102e-4	5.89334e-7	0.0276375	4.28084e-5
chr1	223998856	223998954	439822	0	+	0.5	(0.49,0.526]	chr1	47460	24	INTRON	INTRON	SEPTIN7P13	ENSG00000185495.10	ENST00000622033.4:ENST00000618315.4:ENST00000327086.8:ENST00000449219.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	15	2	4.4628	4.90886	5.35492	7.611e-4	1.0002e-6	0.0225125	7.00342e-5
chr20	32308014	32308113	9625663	0	+	0.515152	(0.49,0.526]	chr20	950077	299	INTRON	INTRON	KIF3B	ENSG00000101350.8	ENST00000375712.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.4628	4.90886	5.35492	7.611e-4	1.0002e-6	0.0225125	7.00342e-5
chr18	12610191	12610291	9182202	0	-	0.42	(0.392,0.424]	chr18	884908	214	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	4.8005	4.908735	5.01697	7.03248e-9	1e-12	7.35448e-7	1.73382e-10
chr9	100449565	100449663	5452298	0	+	0.387755	(0.36,0.392]	chr9	486904	40	INTRON	INTRON	MSANTD3	ENSG00000066697.15	ENST00000395067.7:ENST00000374885.5:ENST00000622639.4:ENST00000374886.7:ENST00000613183.1:ENST00000489377.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	4.30331	4.9083950000000005	5.51348	2.34074e-5	1e-12	0.00116109	1.72912e-10
chrX	124042845	124042945	10218435	0	+	0.48	(0.459,0.49]	chrX	1017589	2	SS5_PROX	SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000693144.1:ENST00000693553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	4.4153	4.907995	5.40069	1.15324e-6	8.98032e-7	7.95154e-5	6.37943e-5
chr1	246600637	246600737	487823	0	+	0.39	(0.36,0.392]	chr1	51427	83	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7:ENST00000366511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.30331	4.90768	5.51205	2.34074e-5	2.39077e-6	0.00116109	1.5204e-4
chr12	28247571	28247670	6857242	0	+	0.383838	(0.36,0.392]	chr12	626376	210	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	4.30331	4.90768	5.51205	2.34074e-5	2.39077e-6	0.00116109	1.5204e-4
chr3	177128964	177129064	2499315	0	-	0.35	(0.32,0.36]	chr3	239237	177	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	3.32165	4.90716	6.49267	1.85259e-4	1.53492e-11	0.00691112	2.28984e-9
chr12	48656746	48656845	7157857	0	-	0.393939	(0.392,0.424]	chr12	657592	13	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549463.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.75797	4.9065	5.05503	2.01084e-7	2.39312e-9	1.60882e-5	2.68297e-7
chr13	102867523	102867612	7442914	0	+	0.483146	(0.459,0.49]	chr13	685245	3	INTRON	INTRON	ERCC5	ENSG00000134899.24	ENST00000651002.1:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1:ENST00000651387.1:ENST00000375954.1:ENST00000481099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.76501	4.90643	5.04785	1.46149e-4	2.39418e-5	0.00564049	0.00119556
chr20	32282158	32282258	9625404	0	+	0.49	(0.459,0.49]	chr20	950077	40	INTRON	INTRON	KIF3B	ENSG00000101350.8	ENST00000375712.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.76501	4.90643	5.04785	1.46149e-4	2.39418e-5	0.00564049	0.00119556
chr3	191351493	191351593	2143912	0	+	0.47	(0.459,0.49]	chr3	209985	214	INTRON	INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.76501	4.90643	5.04785	1.46149e-4	2.39418e-5	0.00564049	0.00119556
chr6	17671036	17671135	4013148	0	-	0.464646	(0.459,0.49]	chr6	363152	11	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.76501	4.90643	5.04785	1.46149e-4	2.39418e-5	0.00564049	0.00119556
chr7	111057144	111057244	4814273	0	-	0.46	(0.459,0.49]	chr7	431926	932	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.76501	4.90643	5.04785	1.46149e-4	2.39418e-5	0.00564049	0.00119556
chr1	153752908	153753005	302826	0	+	0.484536	(0.459,0.49]	chr1	32397	1	INTRON	INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000480659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.83271	4.90626	4.97981	1.09213e-4	3.36273e-5	0.00442392	0.00159406
chr9	123620677	123620777	5728322	0	-	0.46	(0.459,0.49]	chr9	513629	108	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.83271	4.90626	4.97981	1.09213e-4	3.36273e-5	0.00442392	0.00159406
chrX	9499382	9499482	10077754	0	+	0.47	(0.459,0.49]	chrX	1005229	336	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.83271	4.90626	4.97981	1.09213e-4	3.36273e-5	0.00442392	0.00159406
chr16	2756971	2757038	8304805	0	+	0.402985	(0.392,0.424]	chr16	773104	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	98	2	4.76054	4.905139999999999	5.04974	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	4739341	4739441	5545031	0	-	0.48	(0.459,0.49]	chr9	499126	164	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	4.19471	4.904935	5.61516	9.49302e-8	4.50563e-8	8.06088e-6	4.04764e-6
chr19	19034238	19034338	9309087	0	+	0.47	(0.459,0.49]	chr19	902061	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000540707.5:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000543877.1:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.85282	4.90479	5.95676	2.77093e-6	1.17119e-9	1.73137e-4	1.35849e-7
chr14	60113021	60113119	7638491	0	+	0.571429	(0.57,0.629]	chr14	703189	20	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	4.37105	4.903180000000001	5.43531	4.54233e-7	2.83977e-7	3.38977e-5	2.21461e-5
chr6	43595611	43595710	3783927	0	+	0.626263	(0.57,0.629]	chr6	347012	78	INTRON	INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.25802	4.9031199999999995	5.54822	1.55189e-6	8.11421e-8	1.02479e-4	7.06304e-6
chrX	49072950	49073050	10340573	0	-	0.62	(0.57,0.629]	chrX	1026776	3	SS3_PROX	SS3_PROX:INTRON	PRAF2	ENSG00000243279.4	ENST00000553851.3:ENST00000618882.1:ENST00000376386.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	4.25802	4.9031199999999995	5.54822	1.55189e-6	8.11421e-8	1.02479e-4	7.06304e-6
chr10	72351852	72351951	6158557	0	-	0.535354	(0.526,0.57]	chr10	551361	64	INTRON	INTRON	DNAJB12	ENSG00000148719.16	ENST00000338820.7:ENST00000394903.6:ENST00000444643.8:ENST00000461919.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	4.14073	4.9031	5.66547	4.05077e-8	7.65175e-11	3.67181e-6	1.04291e-8
chr11	64144164	64144264	6620920	0	-	0.61	(0.57,0.629]	chr11	604649	174	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.86692	4.9005849999999995	4.93425	4.28317e-5	2.91369e-5	0.0019752	0.00141183
chr16	501412	501511	8294940	0	+	0.575758	(0.57,0.629]	chr16	770358	41	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.86692	4.9005849999999995	4.93425	4.28317e-5	2.91369e-5	0.0019752	0.00141183
chr6	30034507	30034607	4031620	0	-	0.42	(0.392,0.424]	chr6	364982	2	SS5_PROX	SS5_PROX:INTRON	ZNRD1ASP	ENSG00000204623.10	ENST00000688495.1:ENST00000420251.5:ENST00000376797.7:ENST00000448093.5:ENST00000425604.5:ENST00000444051.1:ENST00000685581.1:ENST00000437417.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	2	19	2	3.90178	4.90041	5.89904	7.45573e-6	2.16736e-8	4.27499e-4	2.09062e-6
chr7	70144705	70144805	4412168	0	+	0.36	(0.32,0.36]	chr7	396995	98	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000476695.2:ENST00000643587.1:ENST00000659051.1:ENST00000643060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	72	2	4.66867	4.90018	5.13169	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	32585076	32585173	6365053	0	+	0.536082	(0.526,0.57]	chr11	570081	4	INTRON	INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	4.08256	4.90014	5.71772	1.72001e-8	4.03572e-10	1.66972e-6	5.02379e-8
chr2	130840000	130840100	1142327	0	+	0.53	(0.526,0.57]	chr2	122517	19	INTRON	INTRON	ARHGEF4	ENSG00000136002.20	ENST00000409359.7:ENST00000526381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	4.45268	4.900040000000001	5.3474	1.05485e-6	4.08411e-7	7.33447e-5	3.06417e-5
chr7	101885325	101885425	4494077	0	+	0.54	(0.526,0.57]	chr7	404874	660	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	4.45268	4.900040000000001	5.3474	1.05485e-6	4.08411e-7	7.33447e-5	3.06417e-5
chr17	73236995	73237095	8795203	0	+	0.33	(0.32,0.36]	chr17	836564	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C17orf80	ENSG00000141219.16	ENST00000255557.8:ENST00000535032.7:ENST00000577615.5:ENST00000359042.6:ENST00000268942.12:ENST00000426147.6:ENST00000582793.1	protein_coding	protein_coding	protein_coding	protein_coding	144	776	2	4.73849	4.89945	5.06041	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	43567414	43567514	9505718	0	-	0.52	(0.49,0.526]	chr19	937131	60	INTRON	INTRON	XRCC1	ENSG00000073050.12	ENST00000262887.10:ENST00000543982.5:ENST00000595789.5:ENST00000598165.5:ENST00000599693.5:ENST00000594107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	4.0726	4.898935	5.72527	1.93553e-5	1.60521e-8	9.87839e-4	1.5647e-6
chr1	110961139	110961238	722706	0	-	0.434343	(0.424,0.459]	chr1	77369	80	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.11093	4.898714999999999	5.6865	5.36389e-5	9.64047e-8	0.00243585	8.13052e-6
chr13	30625171	30625270	7342601	0	+	0.373737	(0.36,0.392]	chr13	678746	29	INTRON	INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.57244	4.89747	5.2225	2.06042e-5	2.92322e-6	0.00103061	1.80583e-4
chr3	188242361	188242461	2131888	0	+	0.39	(0.36,0.392]	chr3	209616	18	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.57244	4.89747	5.2225	2.06042e-5	2.92322e-6	0.00103061	1.80583e-4
chr1	160333032	160333127	786630	0	-	0.526316	(0.526,0.57]	chr1	87947	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.38241	4.89526	5.40811	0.00101891	6.86579e-7	0.0276375	4.92496e-5
chr22	24955370	24955470	9911635	0	+	0.53	(0.526,0.57]	chr22	984690	22	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.38241	4.89526	5.40811	0.00101891	6.86579e-7	0.0276375	4.92496e-5
chr5	109797220	109797320	3273353	0	+	0.26	[0,0.32]	chr5	301372	26	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	4.56637	4.895239999999999	5.22411	1.49849e-9	1.17446e-10	1.73006e-7	1.55143e-8
chr8	67163262	67163354	4999000	0	+	0.391304	(0.36,0.392]	chr8	448604	1	SS3_PROX	SS3_PROX:INTRON	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000679112.1:ENST00000678645.1:ENST00000677845.1:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000677855.1:ENST00000677052.1:ENST00000679274.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	4.32151	4.89392	5.46633	1.01247e-9	1.31388e-11	1.19721e-7	1.98774e-9
chr4	185275936	185276036	2808673	0	+	0.35	(0.32,0.36]	chr4	265495	84	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.27744	4.8938749999999995	5.51031	6.03386e-5	2.41138e-6	0.00268144	1.53938e-4
chr11	78498492	78498592	6665412	0	-	0.39	(0.36,0.392]	chr11	611224	49	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	4.08645	4.8935949999999995	5.70074	1.23682e-4	3.77982e-7	0.0049353	2.84782e-5
chrX	102837322	102837421	10188944	0	+	0.454545	(0.424,0.459]	chrX	1014572	21	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000431616.5:ENST00000440496.5:ENST00000420471.5:ENST00000658813.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	4.01593	4.89339	5.77085	8.03177e-5	5.32819e-8	0.00342222	4.72329e-6
chr2	37224195	37224293	1417390	0	-	0.387755	(0.36,0.392]	chr2	147470	4	INTRON	INTRON	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.4918	4.8933599999999995	5.29492	1.51392e-5	4.36875e-6	7.85619e-4	2.58808e-4
chrX	139885149	139885249	10455812	0	-	0.46	(0.459,0.49]	chrX	1035914	530	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.04656	4.8924	5.73824	3.80472e-5	2.1921e-8	0.00181622	2.0899e-6
chr1	16772196	16772296	58343	0	+	0.5	(0.49,0.526]	chr1	5795	314	INTRON	INTRON	CROCC	ENSG00000058453.17	ENST00000466256.6	protein_coding	processed_transcript	protein_coding	processed_transcript	0	14	2	4.85538	4.8923950000000005	4.92941	6.26806e-5	4.32628e-5	0.00277665	0.00200309
chr17	43220549	43220646	8937654	0	-	0.505155	(0.49,0.526]	chr17	859027	9	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000427995.5:ENST00000593624.5:ENST00000595400.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	14	2	4.85538	4.8923950000000005	4.92941	6.26806e-5	4.32628e-5	0.00277665	0.00200309
chr2	24766600	24766698	953706	0	+	0.520408	(0.49,0.526]	chr2	104019	35	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.85538	4.8923950000000005	4.92941	6.26806e-5	4.32628e-5	0.00277665	0.00200309
chr5	1477986	1478080	3413843	0	-	0.5	(0.49,0.526]	chr5	314193	1	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	4.85538	4.8923950000000005	4.92941	6.26806e-5	4.32628e-5	0.00277665	0.00200309
chr5	134689575	134689673	3321231	0	+	0.510204	(0.49,0.526]	chr5	304888	9	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.85538	4.8923950000000005	4.92941	6.26806e-5	4.32628e-5	0.00277665	0.00200309
chr19	43525401	43525500	9505435	0	-	0.454545	(0.424,0.459]	chr19	937051	135	INTRON	INTRON	ETHE1	ENSG00000105755.8	ENST00000292147.7:ENST00000594342.5:ENST00000600651.5:ENST00000598330.1:ENST00000602138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.01346	4.892155000000001	5.77085	0.00778514	5.32819e-8	0.130982	4.72329e-6
chr11	6502152	6502252	6307658	0	+	0.49	(0.459,0.49]	chr11	565838	28	INTRON	INTRON	DNHD1	ENSG00000179532.13	ENST00000473019.5:ENST00000254579.11:ENST00000354685.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	4.7569	4.89209	5.02728	1.37759e-8	3.90202e-10	1.37123e-6	4.86489e-8
chr20	63678630	63678725	9687520	0	+	0.6	(0.57,0.629]	chr20	957684	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	289	2	4.84281	4.891375	4.93994	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	6013575	6013673	9562683	0	+	0.479592	(0.459,0.49]	chr20	946986	33	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	55	2	4.5488	4.89132	5.23384	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59747152	59747251	3479723	0	-	0.464646	(0.459,0.49]	chr5	319265	1608	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	4.87893	4.89058	4.90223	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	72364657	72364756	8233154	0	-	0.434343	(0.424,0.459]	chr15	764227	18	INTRON	INTRON	HEXA	ENSG00000213614.11	ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.09426	4.89038	5.6865	0.00651192	9.64047e-8	0.116758	8.13052e-6
chr11	469014	469113	6292543	0	+	0.606061	(0.57,0.629]	chr11	563546	81	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.68132	4.890125	5.09893	1.50304e-4	7.91825e-6	0.00577248	4.54299e-4
chr1	235328569	235328638	460860	0	+	0.608696	(0.57,0.629]	chr1	49697	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGPS1	ENSG00000152904.11	ENST00000488594.5:ENST00000471812.5:ENST00000358966.6:ENST00000282841.9:ENST00000391855.2:ENST00000482013.1:ENST00000489692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.74833	4.889835	5.03134	1.07277e-4	1.22122e-5	0.00442346	6.58806e-4
chr12	111562009	111562109	7280534	0	-	0.59	(0.57,0.629]	chr12	671163	57	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.74833	4.889835	5.03134	1.07277e-4	1.22122e-5	0.00442346	6.58806e-4
chr3	185327623	185327723	2126901	0	+	0.58	(0.57,0.629]	chr3	209156	347	INTRON	INTRON	MAP3K13	ENSG00000073803.14	ENST00000446828.5:ENST00000447637.1:ENST00000455188.5:ENST00000424227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.74833	4.889835	5.03134	1.07277e-4	1.22122e-5	0.00442346	6.58806e-4
chr8	30812785	30812853	5154600	0	-	0.602941	(0.57,0.629]	chr8	461553	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518243.5:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.74833	4.889835	5.03134	1.07277e-4	1.22122e-5	0.00442346	6.58806e-4
chrX	71395414	71395509	10156580	0	+	0.589474	(0.57,0.629]	chrX	1012505	8	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000483985.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.74833	4.889835	5.03134	1.07277e-4	1.22122e-5	0.00442346	6.58806e-4
chr1	204269302	204269400	841103	0	-	0.418367	(0.392,0.424]	chr1	93537	6	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1:ENST00000672625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr1	224363908	224364008	440776	0	+	0.41	(0.392,0.424]	chr1	47562	4	SS3_PROX	SS3_PROX:INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr10	32336615	32336715	6102710	0	-	0.4	(0.392,0.424]	chr10	547013	303	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr11	6225207	6225306	6545735	0	-	0.40404	(0.392,0.424]	chr11	594775	1	INTRON	INTRON	FHIP1B	ENSG00000051009.11	ENST00000265978.8:ENST00000449352.7:ENST00000524416.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr13	21555932	21556032	7463977	0	-	0.4	(0.392,0.424]	chr13	687605	159	INTRON	INTRON	MICU2	ENSG00000165487.14	ENST00000382374.9:ENST00000469058.1:ENST00000476895.5:ENST00000468222.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr17	4200856	4200955	8850359	0	-	0.424242	(0.392,0.424]	chr17	845660	29	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000573250.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr17	15665775	15665875	8881224	0	-	0.4	(0.392,0.424]	chr17	849730	65	INTRON	INTRON	TRIM16	ENSG00000221926.13	ENST00000578237.5:ENST00000416464.6:ENST00000649191.2:ENST00000336708.11:ENST00000578744.5:ENST00000473540.5:ENST00000581224.5:ENST00000581200.1:ENST00000460728.5:ENST00000579272.5:ENST00000584142.5:ENST00000473659.5:ENST00000494759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr5	66056323	66056422	3196834	0	+	0.393939	(0.392,0.424]	chr5	294845	8	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr7	99105873	99105973	4786070	0	-	0.42	(0.392,0.424]	chr7	428727	246	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr8	42443845	42443945	5162729	0	-	0.41	(0.392,0.424]	chr8	462519	38	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5:ENST00000518660.5:ENST00000522401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.85654	4.88978	4.92302	1.84333e-4	1.45314e-4	0.00688171	0.00569484
chr1	100885833	100885912	713738	0	-	0.35443	(0.32,0.36]	chr1	76402	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	EXTL2	ENSG00000162694.14	ENST00000535414.5:ENST00000370113.7:ENST00000370114.8:ENST00000450240.2:ENST00000416479.1:ENST00000494907.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	4.08054	4.889765000000001	5.69899	3.81705e-7	1.61702e-7	2.90385e-5	1.33079e-5
chr15	25062288	25062388	7927870	0	+	0.45	(0.424,0.459]	chr15	731693	2	SS5_PROX	SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1	lncRNA	lncRNA	lncRNA	lncRNA	7	60	2	4.62209	4.889105	5.15612	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	163302735	163302835	791631	0	-	0.48	(0.459,0.49]	chr1	88542	538	INTRON	INTRON	RGS5	ENSG00000143248.13	ENST00000618415.4:ENST00000531954.5:ENST00000530241.5:ENST00000534288.5:ENST00000428971.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.96686	4.887015	5.80717	5.54129e-5	1.22616e-8	0.00252909	1.22232e-6
chr8	42323693	42323793	4976094	0	+	0.52	(0.49,0.526]	chr8	446374	8	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000518679.5:ENST00000342222.6:ENST00000520201.5:ENST00000521661.5:ENST00000520655.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1:ENST00000523599.2:ENST00000519938.5:ENST00000522133.1:ENST00000523018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	3.9433	4.88677	5.83024	5.12922e-7	4.05406e-9	3.78931e-5	4.37881e-7
chr1	222950230	222950330	438414	0	+	0.38	(0.36,0.392]	chr1	47285	65	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3:ENST00000284476.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.26063	4.886340000000001	5.51205	0.00451705	2.39077e-6	0.0875511	1.5204e-4
chr11	20077151	20077251	6345022	0	+	0.39	(0.36,0.392]	chr11	569000	2	SS3_PROX	SS3_PROX:INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5:ENST00000525322.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.26063	4.886340000000001	5.51205	0.00451705	2.39077e-6	0.0875511	1.5204e-4
chr2	235783566	235783666	1349059	0	+	0.37	(0.36,0.392]	chr2	139244	327	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.26063	4.886340000000001	5.51205	0.00451705	2.39077e-6	0.0875511	1.5204e-4
chr5	52995319	52995419	3173022	0	+	0.37	(0.36,0.392]	chr5	293003	54	INTRON	INTRON	ITGA2	ENSG00000164171.11	ENST00000503810.6:ENST00000296585.10:ENST00000509960.5:ENST00000510722.1:ENST00000509814.5:ENST00000513685.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.26063	4.886340000000001	5.51205	0.00451705	2.39077e-6	0.0875511	1.5204e-4
chr16	85502788	85502888	8474165	0	+	0.57	(0.526,0.57]	chr16	792098	1435	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	4.71261	4.886055	5.0595	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	26453026	26453125	82677	0	+	0.50505	(0.49,0.526]	chr1	8659	46	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000525682.6:ENST00000526219.5:ENST00000360009.6:ENST00000430232.5:ENST00000431933.5:ENST00000416052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.08493	4.886045	5.68716	0.00395081	3.37299e-8	0.0816719	3.12343e-6
chrX	47462429	47462529	10337006	0	-	0.46	(0.459,0.49]	chrX	1025990	56	INTRON	INTRON	ZNF41	ENSG00000147124.13	ENST00000684689.1:ENST00000377065.8:ENST00000313116.11:ENST00000432977.1:ENST00000465311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	470	2	4.64146	4.885735	5.13001	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	110961238	110961337	722707	0	-	0.363636	(0.36,0.392]	chr1	77369	81	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr1	147594502	147594602	285593	0	+	0.38	(0.36,0.392]	chr1	29598	525	INTRON	INTRON	BCL9	ENSG00000116128.12	ENST00000234739.8:ENST00000683836.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr12	56444715	56444815	7177706	0	-	0.39	(0.36,0.392]	chr12	662112	101	INTRON	INTRON	TIMELESS	ENSG00000111602.12	ENST00000553532.6:ENST00000229201.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr18	13748029	13748128	9071028	0	+	0.363636	(0.36,0.392]	chr18	876572	13	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr2	24522588	24522688	951241	0	+	0.39	(0.36,0.392]	chr2	103879	300	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr2	241697565	241697665	1365397	0	+	0.38	(0.36,0.392]	chr2	141253	34	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000636051.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr5	37559476	37559576	3153647	0	+	0.38	(0.36,0.392]	chr5	291417	425	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr6	166600442	166600542	4273009	0	-	0.39	(0.36,0.392]	chr6	387183	559	INTRON	INTRON	RPS6KA2	ENSG00000071242.12	ENST00000265678.9:ENST00000510118.5:ENST00000503859.5:ENST00000507350.5:ENST00000512860.5:ENST00000507371.5:ENST00000506565.1:ENST00000511034.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.3312	4.88528	5.43936	0.00387074	3.42448e-6	0.078873	2.10826e-4
chr8	31074283	31074382	4967156	0	+	0.40404	(0.392,0.424]	chr8	444979	56	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.25372	4.884765	5.51581	2.90267e-5	1.07176e-6	0.00141183	7.36955e-5
chr14	31301595	31301694	7794958	0	-	0.50505	(0.49,0.526]	chr14	717824	40	INTRON	INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	4.79681	4.88469	4.97257	3.35573e-9	3.72383e-10	3.68324e-7	4.65717e-8
chr18	9836803	9836902	9059183	0	+	0.545455	(0.526,0.57]	chr18	875444	208	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2:ENST00000583921.5:ENST00000577796.5:ENST00000577371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	112	2	4.61027	4.882915000000001	5.15556	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	7918162	7918262	5782815	0	+	0.43	(0.424,0.459]	chr10	521222	893	INTRON	INTRON	TAF3	ENSG00000165632.9	ENST00000687671.1:ENST00000690066.1:ENST00000344293.6:ENST00000692164.1:ENST00000686593.1:ENST00000692339.1:ENST00000687522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr10	63442917	63443017	6148692	0	-	0.44	(0.424,0.459]	chr10	550098	621	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr11	65287840	65287940	6415089	0	+	0.44	(0.424,0.459]	chr11	577021	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POLA2	ENSG00000014138.9	ENST00000527850.5:ENST00000265465.8:ENST00000527618.5:ENST00000525924.1:ENST00000533192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr11	87266959	87267059	6464819	0	+	0.45	(0.424,0.459]	chr11	584125	299	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr15	49649556	49649655	7974995	0	+	0.444444	(0.424,0.459]	chr15	737693	61	UTR3	UTR3:EXON_MRNA	DTWD1	ENSG00000104047.15	ENST00000403028.8:ENST00000251250.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr15	50361032	50361132	7975123	0	+	0.44	(0.424,0.459]	chr15	737694	62	EXON_LNCRNA	EXON_LNCRNA:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr16	69281652	69281752	8420878	0	+	0.45	(0.424,0.459]	chr16	788808	110	INTRON	INTRON	SNTB2	ENSG00000168807.17	ENST00000467311.5:ENST00000336278.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr18	13750611	13750711	9071054	0	+	0.44	(0.424,0.459]	chr18	876572	39	INTRON	INTRON	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr19	49087533	49087633	9373128	0	+	0.43	(0.424,0.459]	chr19	912684	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr2	105281721	105281821	1535025	0	-	0.44	(0.424,0.459]	chr2	159480	6	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000595531.5:ENST00000393359.7:ENST00000258449.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr2	182426177	182426277	1636483	0	-	0.44	(0.424,0.459]	chr2	168578	2	SS5_PROX	SS5_PROX:INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr5	102834490	102834590	3264564	0	+	0.45	(0.424,0.459]	chr5	300736	259	INTRON	INTRON	PAM	ENSG00000145730.21	ENST00000505654.1:ENST00000508060.1:ENST00000510208.2:ENST00000304400.12:ENST00000684529.1:ENST00000438793.8:ENST00000455264.7:ENST00000682972.1:ENST00000682882.1:ENST00000682024.1:ENST00000506127.1:ENST00000348126.7:ENST00000684379.1:ENST00000512073.1:ENST00000684043.1:ENST00000682407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.71424	4.882815	5.05139	3.07139e-4	4.27641e-5	0.0105767	0.00199812
chr12	71621691	71621788	7209946	0	-	0.402062	(0.392,0.424]	chr12	664959	10	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	4.52914	4.882804999999999	5.23647	3.08255e-9	2.4131e-10	3.40092e-7	3.08506e-8
chr1	113794486	113794586	729854	0	-	0.45	(0.424,0.459]	chr1	78158	163	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr12	1100454	1100554	6789379	0	+	0.45	(0.424,0.459]	chr12	620121	165	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000539007.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr16	89337571	89337671	8623206	0	-	0.45	(0.424,0.459]	chr16	813681	87	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr22	24561993	24562092	9909691	0	+	0.454545	(0.424,0.459]	chr22	984393	38	INTRON	INTRON	SNRPD3	ENSG00000100028.12	ENST00000215829.8:ENST00000402849.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr5	132379971	132380071	3317033	0	+	0.43	(0.424,0.459]	chr5	304244	16	EXON_MRNA	EXON_MRNA:INTRON	SLC22A5	ENSG00000197375.14	ENST00000245407.8:ENST00000435065.7:ENST00000693763.1:ENST00000687740.1:ENST00000692413.1:ENST00000689271.1:ENST00000693308.1:ENST00000690900.1:ENST00000686757.1:ENST00000448810.6:ENST00000415928.6:ENST00000437841.6:ENST00000692825.1:ENST00000461013.5:ENST00000692355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr9	14642405	14642504	5577873	0	-	0.434343	(0.424,0.459]	chr9	500158	20	INTRON	INTRON	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.79703	4.88256	4.96809	2.28148e-4	6.10851e-5	0.00827964	0.0027377
chr1	169159554	169159654	797144	0	-	0.42	(0.392,0.424]	chr1	88953	264	INTRON	INTRON	NME7	ENSG00000143156.14	ENST00000472647.5:ENST00000367811.8:ENST00000493481.1:ENST00000530739.5:ENST00000525440.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	4.79787	4.8813949999999995	4.96492	6.13769e-11	1.3437e-12	8.52781e-9	2.28243e-10
chr2	43973660	43973714	1438155	0	-	0.425926	(0.424,0.459]	chr2	149192	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000682999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	3.73279	4.8811350000000004	6.02948	1.78903e-5	1.8912e-9	9.13813e-4	2.1436e-7
chr3	133660245	133660344	2439302	0	-	0.424242	(0.392,0.424]	chr3	234232	7	INTRON	INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.17862	4.880879999999999	5.58314	4.01331e-5	7.33041e-7	0.00187621	5.19799e-5
chr8	97646685	97646785	5035378	0	+	0.4	(0.392,0.424]	chr8	451777	14	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000522313.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.17862	4.880879999999999	5.58314	4.01331e-5	7.33041e-7	0.00187621	5.19799e-5
chrX	73845530	73845630	10373668	0	-	0.42	(0.392,0.424]	chrX	1029968	82	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	4.17862	4.880879999999999	5.58314	4.01331e-5	7.33041e-7	0.00187621	5.19799e-5
chr15	62608554	62608654	7998103	0	+	0.52	(0.49,0.526]	chr15	739277	184	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000636159.2:ENST00000561197.5:ENST00000561311.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	4.40557	4.880245	5.35492	1.0002e-6	7.28528e-10	7.00342e-5	8.71496e-8
chrM	13857	13952	10480514	0	+	0.4	(0.392,0.424]	chrM	1039009	17	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	12	76	2	4.27773	4.879955	5.48218	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	69380887	69380986	1476513	0	-	0.30303	[0,0.32]	chr2	152788	64	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	3.98816	4.8788	5.76944	6.69422e-7	2.56854e-7	4.83422e-5	2.02856e-5
chr1	215620240	215620333	431403	0	+	0.397849	(0.392,0.424]	chr1	46432	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	46	2	4.64073	4.87874	5.11675	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	41661321	41661419	7952165	0	+	0.510204	(0.49,0.526]	chr15	734962	4	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.13:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.64127	4.8787	5.11613	2.4929e-4	1.03252e-5	0.0089494	5.57702e-4
chr20	34761813	34761912	9729992	0	-	0.494949	(0.49,0.526]	chr20	963249	25	INTRON	INTRON	NCOA6	ENSG00000198646.14	ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.64127	4.8787	5.11613	2.4929e-4	1.03252e-5	0.0089494	5.57702e-4
chr22	17595195	17595292	9980237	0	-	0.525773	(0.49,0.526]	chr22	993296	7	EXON_MRNA	EXON_MRNA:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000473248.1:ENST00000413576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.64127	4.8787	5.11613	2.4929e-4	1.03252e-5	0.0089494	5.57702e-4
chr2	69190041	69190141	1064800	0	+	0.53	(0.526,0.57]	chr2	113109	70	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000303714.9	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	4.37952	4.878575	5.37763	5.61359e-10	1e-12	6.8413e-8	1.72912e-10
chr12	20589658	20589758	6844264	0	+	0.52	(0.49,0.526]	chr12	625053	171	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.71489	4.878335	5.04178	1.81396e-4	1.57703e-5	0.0069054	8.20905e-4
chr5	140256837	140256937	3622092	0	-	0.5	(0.49,0.526]	chr5	328838	104	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	4.71489	4.878335	5.04178	1.81396e-4	1.57703e-5	0.0069054	8.20905e-4
chr1	119148966	119149066	273668	0	+	0.55	(0.526,0.57]	chr1	28325	15	INTRON	INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000425884.6:ENST00000688395.1:ENST00000440150.5:ENST00000670000.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1:ENST00000445565.2	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.84794	4.87798	4.90802	6.50622e-5	4.81512e-5	0.00284455	0.00220626
chr16	11904317	11904417	8511003	0	-	0.53	(0.526,0.57]	chr16	798773	59	INTRON	INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6:ENST00000568849.5:ENST00000562169.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.84794	4.87798	4.90802	6.50622e-5	4.81512e-5	0.00284455	0.00220626
chr3	179579457	179579554	2115238	0	+	0.536082	(0.526,0.57]	chr3	207066	22	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000487978.5:ENST00000467615.5:ENST00000479056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.84794	4.87798	4.90802	6.50622e-5	4.81512e-5	0.00284455	0.00220626
chr5	142816827	142816927	3344829	0	+	0.57	(0.526,0.57]	chr5	307243	436	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000378013.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.84794	4.87798	4.90802	6.50622e-5	4.81512e-5	0.00284455	0.00220626
chr1	154425997	154426097	304386	0	+	0.52	(0.49,0.526]	chr1	32924	199	INTRON	INTRON	IL6R	ENSG00000160712.13	ENST00000622330.4:ENST00000344086.8:ENST00000368485.8:ENST00000512471.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.95512	4.877800000000001	5.80048	2.842e-7	8.0778e-9	2.21461e-5	8.33659e-7
chr12	28342541	28342641	6858209	0	+	0.36	(0.32,0.36]	chr12	626432	344	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	4.49493	4.877585	5.26024	1.01106e-5	4.60308e-10	5.51435e-4	5.6537e-8
chr12	57067834	57067934	7179640	0	-	0.57	(0.526,0.57]	chr12	662642	27	INTRON	INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.97495	4.876855	5.77876	3.21576e-5	9.84906e-9	0.00156852	1.00136e-6
chr15	74541530	74541630	8041051	0	+	0.64	(0.629,1]	chr15	742782	2	SS5_PROX	SS5_PROX:INTRON	ARID3B	ENSG00000179361.18	ENST00000622429.1:ENST00000346246.10:ENST00000569680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	4.29444	4.87568	5.45692	1.64245e-7	1.47634e-7	1.3553e-5	1.22032e-5
chr13	77145145	77145231	7545156	0	-	0.406977	(0.392,0.424]	chr13	693706	2	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000695078.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695086.1:ENST00000466564.3:ENST00000486679.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	3.78194	4.87428	5.96662	7.47402e-4	6.28695e-9	0.0225125	6.5739e-7
chr13	40906061	40906161	7499365	0	-	0.48	(0.459,0.49]	chr13	690236	419	INTRON	INTRON	TPTE2P5	ENSG00000168852.13	ENST00000652519.1:ENST00000379515.3:ENST00000633547.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.51255	4.87379	5.23503	6.3564e-4	5.25256e-6	0.0193151	3.11102e-4
chr15	82495695	82495795	8259530	0	-	0.46	(0.459,0.49]	chr15	766766	174	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.51255	4.87379	5.23503	6.3564e-4	5.25256e-6	0.0193151	3.11102e-4
chr16	69983839	69983937	8579014	0	-	0.469388	(0.459,0.49]	chr16	809007	7	INTRON	INTRON	NPIPB14P	ENSG00000226232.8	ENST00000532298.5:ENST00000525562.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	13	2	4.51255	4.87379	5.23503	6.3564e-4	5.25256e-6	0.0193151	3.11102e-4
chr5	149541290	149541390	3636518	0	-	0.46	(0.459,0.49]	chr5	330396	94	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.51255	4.87379	5.23503	6.3564e-4	5.25256e-6	0.0193151	3.11102e-4
chrX	132223733	132223832	10225602	0	+	0.484848	(0.459,0.49]	chrX	1018405	45	INTRON	INTRON	RAP2C-AS1	ENSG00000232160.7	ENST00000656464.1:ENST00000421483.6:ENST00000441399.3:ENST00000669125.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.51255	4.87379	5.23503	6.3564e-4	5.25256e-6	0.0193151	3.11102e-4
chr10	102952315	102952415	5967380	0	+	0.46	(0.459,0.49]	chr10	536037	248	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.57976	4.87324	5.16672	4.98571e-4	7.74288e-6	0.0160179	4.39068e-4
chr12	100137303	100137403	7260080	0	-	0.46	(0.459,0.49]	chr12	668502	82	INTRON	INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000356828.7:ENST00000547428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.57976	4.87324	5.16672	4.98571e-4	7.74288e-6	0.0160179	4.39068e-4
chr16	30248838	30248937	8544226	0	-	0.464646	(0.459,0.49]	chr16	804094	26	INTRON	INTRON	NPIPB13	ENSG00000198064.14	ENST00000568053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.57976	4.87324	5.16672	4.98571e-4	7.74288e-6	0.0160179	4.39068e-4
chr6	14121454	14121553	3717546	0	+	0.464646	(0.459,0.49]	chr6	337937	30	INTRON	INTRON	CD83	ENSG00000112149.10	ENST00000612003.4:ENST00000379153.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.57976	4.87324	5.16672	4.98571e-4	7.74288e-6	0.0160179	4.39068e-4
chr9	130754754	130754854	5515476	0	+	0.49	(0.459,0.49]	chr9	495051	399	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.57976	4.87324	5.16672	4.98571e-4	7.74288e-6	0.0160179	4.39068e-4
chr8	65752886	65752986	5183482	0	-	0.3	[0,0.32]	chr8	464532	47	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000379419.8:ENST00000396642.7:ENST00000518667.1:ENST00000519231.5:ENST00000523253.1:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	4.82715	4.873184999999999	4.91922	4.68189e-11	1e-12	6.58594e-9	1.72912e-10
chr10	96580608	96580707	6218628	0	-	0.383838	(0.36,0.392]	chr10	556201	32	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000475401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	4.52282	4.87266	5.2225	2.06042e-5	1.58282e-8	0.00103061	1.55617e-6
chr3	129261207	129261307	1988803	0	+	0.51	(0.49,0.526]	chr3	200093	4	SS5_PROX	SS5_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	75	2	4.38886	4.87232	5.35578	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	8474942	8475042	9567074	0	+	0.4	(0.392,0.424]	chr20	947085	1029	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	3.7075	4.87092	6.03434	9.40427e-4	3.73254e-9	0.0266969	4.03186e-7
chr22	28557259	28557359	10006876	0	-	0.36	(0.32,0.36]	chr22	996542	1143	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	79	421	2	4.73895	4.869949999999999	5.00095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	56440544	56440644	8561690	0	-	0.36	(0.32,0.36]	chr16	806016	4	INTRON	INTRON	NUDT21	ENSG00000167005.14	ENST00000300291.10:ENST00000566340.5:ENST00000568822.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.2286	4.869455	5.51031	2.41138e-6	1.30322e-6	1.53938e-4	8.87161e-5
chr1	246108612	246108711	914540	0	-	0.383838	(0.36,0.392]	chr1	100951	123	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	4.18028	4.869395	5.55851	7.51712e-7	2.22977e-12	5.41481e-5	3.69473e-10
chr10	63294044	63294144	6147202	0	-	0.34	(0.32,0.36]	chr10	550092	249	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	4.73736	4.869	5.00064	5.18532e-7	4.42887e-8	3.83329e-5	3.9809e-6
chr10	129551317	129551417	6021443	0	+	0.49	(0.459,0.49]	chr10	540403	143	INTRON	INTRON	MGMT	ENSG00000170430.10	ENST00000306010.8:ENST00000482653.1:ENST00000651593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81712	4.86889	5.92066	0.0120499	2.70029e-9	0.184357	2.98805e-7
chr15	93016288	93016385	8087671	0	+	0.453608	(0.424,0.459]	chr15	748162	10	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000625662.2:ENST00000627460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	3.91426	4.867855	5.82145	1.12148e-7	1.92567e-8	9.48939e-6	1.85307e-6
chr1	119092624	119092724	738280	0	-	0.4	(0.392,0.424]	chr1	79213	102	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15239	4.867765	5.58314	0.00572894	7.33041e-7	0.105396	5.19799e-5
chr14	52945668	52945767	7832138	0	-	0.424242	(0.392,0.424]	chr14	721392	174	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.15239	4.867765	5.58314	0.00572894	7.33041e-7	0.105396	5.19799e-5
chr2	31907166	31907266	1410807	0	-	0.41	(0.392,0.424]	chr2	146736	135	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15239	4.867765	5.58314	0.00572894	7.33041e-7	0.105396	5.19799e-5
chr6	154753407	154753507	3940108	0	+	0.41	(0.392,0.424]	chr6	358300	110	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15239	4.867765	5.58314	0.00572894	7.33041e-7	0.105396	5.19799e-5
chr9	4829206	4829305	5324135	0	+	0.424242	(0.392,0.424]	chr9	476533	18	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15239	4.867765	5.58314	0.00572894	7.33041e-7	0.105396	5.19799e-5
chr5	1477786	1477886	3413841	0	-	0.57	(0.526,0.57]	chr5	314192	3	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	4.78774	4.8672699999999995	4.9468	3.64708e-9	4.79912e-10	3.98105e-7	5.90331e-8
chrX	73827290	73827389	10373480	0	-	0.373737	(0.36,0.392]	chrX	1029941	68	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	2	18	2	4.4394	4.86716	5.29492	1.51392e-5	2.8726e-8	7.85619e-4	2.70069e-6
chrX	155087666	155087766	10245584	0	+	0.48	(0.459,0.49]	chrX	1021075	86	INTRON	INTRON	BRCC3	ENSG00000185515.16	ENST00000340647.8:ENST00000369459.6:ENST00000369462.5:ENST00000330045.12:ENST00000411985.5:ENST00000453705.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	71	2	4.80145	4.867155	4.93286	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	7825256	7825356	2831832	0	-	0.46	(0.459,0.49]	chr4	268375	57	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000360265.9:ENST00000358461.6:ENST00000382543.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.88247	4.86705	5.85163	0.0104144	5.06515e-9	0.170122	5.39084e-7
chr2	218556011	218556110	1697402	0	-	0.414141	(0.392,0.424]	chr2	174259	19	INTRON	INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5:ENST00000338465.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.21741	4.86661	5.51581	0.00496616	1.07176e-6	0.0964485	7.36955e-5
chr7	135634364	135634464	4564223	0	+	0.42	(0.392,0.424]	chr7	409995	35	INTRON	INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.21741	4.86661	5.51581	0.00496616	1.07176e-6	0.0964485	7.36955e-5
chrX	73851724	73851823	10373730	0	-	0.484848	(0.459,0.49]	chrX	1029968	144	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000429829.6:ENST00000650637.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	4.61869	4.8664950000000005	5.1143	1.26997e-7	4.9806e-11	1.06312e-5	6.98308e-9
chr6	169723151	169723247	4280346	0	-	0.364583	(0.36,0.392]	chr6	387726	17	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	4.03087	4.865805	5.70074	3.77193e-6	3.77982e-7	2.29843e-4	2.84782e-5
chr1	6197251	6197351	502996	0	-	0.54	(0.526,0.57]	chr1	54185	2	SS5_PROX	SS5_PROX:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000465387.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr1	28531015	28531115	89911	0	+	0.53	(0.526,0.57]	chr1	9786	4	SS5_PROX	SS5_PROX:INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000486790.2:ENST00000430407.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr1	51844113	51844213	616835	0	-	0.55	(0.526,0.57]	chr1	68634	32	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr16	501313	501412	8294939	0	+	0.545455	(0.526,0.57]	chr16	770358	40	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr16	3862777	3862877	8498851	0	-	0.54	(0.526,0.57]	chr16	796804	114	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr18	44724631	44724731	9109428	0	+	0.54	(0.526,0.57]	chr18	879662	224	INTRON	INTRON	SETBP1	ENSG00000152217.20	ENST00000426838.8:ENST00000677068.1:ENST00000649279.2:ENST00000677699.1:ENST00000678152.1:ENST00000677077.1:ENST00000677130.1:ENST00000645568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr2	241692334	241692432	1365344	0	+	0.55102	(0.526,0.57]	chr2	141249	13	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000636051.1:ENST00000433036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr7	75373116	75373215	4433496	0	+	0.535354	(0.526,0.57]	chr7	398712	56	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chrX	73846030	73846129	10373673	0	-	0.565657	(0.526,0.57]	chrX	1029968	87	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.63387	4.86426	5.09465	2.57391e-4	1.16684e-5	0.00911512	6.16746e-4
chr12	52902480	52902572	7167392	0	-	0.554348	(0.526,0.57]	chr12	659806	4	SS3_PROX	SS3_PROX:INTRON	KRT8	ENSG00000170421.13	ENST00000552551.5:ENST00000692008.1:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000546826.5:ENST00000548998.5:ENST00000546900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.69362	4.863965	5.03431	1.98837e-4	1.64566e-5	0.00746609	8.48927e-4
chr17	47925218	47925318	8954899	0	-	0.57	(0.526,0.57]	chr17	861478	63	INTRON	INTRON	SP2-AS1	ENSG00000234494.8	ENST00000585280.5:ENST00000451140.6:ENST00000411573.7:ENST00000433001.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.69362	4.863965	5.03431	1.98837e-4	1.64566e-5	0.00746609	8.48927e-4
chr17	74868753	74868852	9008194	0	-	0.555556	(0.526,0.57]	chr17	868700	1	INTRON	INTRON	FDXR	ENSG00000161513.12	ENST00000583881.5:ENST00000293195.10:ENST00000420580.6:ENST00000578473.5:ENST00000579482.5:ENST00000581530.5:ENST00000577509.5:ENST00000583917.5:ENST00000442102.6:ENST00000582944.5:ENST00000413947.6:ENST00000582710.5:ENST00000580492.5:ENST00000579543.1:ENST00000581219.1:ENST00000577932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.69362	4.863965	5.03431	1.98837e-4	1.64566e-5	0.00746609	8.48927e-4
chr22	41614755	41614855	10044627	0	-	0.53	(0.526,0.57]	chr22	1001627	65	INTRON	INTRON	DESI1	ENSG00000100418.8	ENST00000263256.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.69362	4.863965	5.03431	1.98837e-4	1.64566e-5	0.00746609	8.48927e-4
chr7	2370182	2370281	4285286	0	+	0.555556	(0.526,0.57]	chr7	388504	1	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.69362	4.863965	5.03431	1.98837e-4	1.64566e-5	0.00746609	8.48927e-4
chr11	13703653	13703751	6329116	0	+	0.357143	(0.32,0.36]	chr11	568089	28	INTRON	INTRON	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532701.1:ENST00000524933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	4.7265	4.863569999999999	5.00064	6.12159e-4	4.42887e-8	0.0189985	3.9809e-6
chr12	50151158	50151257	7163083	0	-	0.474747	(0.459,0.49]	chr12	659041	22	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	32	2	3.60313	4.86353	6.12393	3.24494e-8	1.31318e-10	3.03829e-6	1.71854e-8
chr1	214547786	214547886	856971	0	-	0.55	(0.526,0.57]	chr1	95358	140	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000486173.1:ENST00000491277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	4.3787	4.86305	5.3474	1.05485e-6	9.49373e-10	7.33447e-5	1.12027e-7
chr15	66722236	66722336	8012535	0	+	0.54	(0.526,0.57]	chr15	741000	47	INTRON	INTRON	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	4.69362	4.8628800000000005	5.03214	1.98837e-4	7.05169e-11	0.00746609	9.69541e-9
chr1	110007737	110007836	254531	0	+	0.353535	(0.32,0.36]	chr1	26178	29	INTRON	INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr14	63537328	63537428	7846517	0	-	0.33	(0.32,0.36]	chr14	722480	292	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000555899.1:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr3	108570107	108570206	2379822	0	-	0.343434	(0.32,0.36]	chr3	228913	1	INTRON	INTRON	CIP2A	ENSG00000163507.15	ENST00000295746.13:ENST00000491772.5:ENST00000481530.5:ENST00000487834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr4	151224646	151224746	3058079	0	-	0.35	(0.32,0.36]	chr4	283904	368	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000652233.1:ENST00000604440.5:ENST00000474743.5:ENST00000514013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr6	147543628	147543728	3915635	0	+	0.35	(0.32,0.36]	chr6	357254	339	INTRON	INTRON	SAMD5	ENSG00000203727.4	ENST00000367474.2:ENST00000566741.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr8	80053830	80053930	5200436	0	-	0.35	(0.32,0.36]	chr8	465824	4	SS3_PROX	SS3_PROX:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523319.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000518500.1:ENST00000520795.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr8	102308345	102308443	5239843	0	-	0.346939	(0.32,0.36]	chr8	468795	27	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chrX	134772783	134772882	10444303	0	-	0.323232	(0.32,0.36]	chrX	1035153	1	INTRON	INTRON	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.32952	4.86264	5.39576	0.00388505	9.86331e-6	0.0816719	5.39872e-4
chr1	52745266	52745366	147875	0	+	0.42	(0.392,0.424]	chr1	18006	182	INTRON	INTRON	ZYG11B	ENSG00000162378.13	ENST00000294353.7:ENST00000545132.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr11	14334801	14334900	6570372	0	-	0.40404	(0.392,0.424]	chr11	597164	261	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr14	49580422	49580521	7817023	0	-	0.414141	(0.392,0.424]	chr14	719493	22	INTRON	INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr18	44842029	44842129	9110602	0	+	0.41	(0.392,0.424]	chr18	879662	1398	INTRON	INTRON	SETBP1	ENSG00000152217.20	ENST00000426838.8:ENST00000677068.1:ENST00000649279.2:ENST00000677699.1:ENST00000678152.1:ENST00000677077.1:ENST00000677130.1:ENST00000645568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr2	71366006	71366106	1070618	0	+	0.41	(0.392,0.424]	chr2	113752	3	SS5_PROX	SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr2	188437779	188437879	1234284	0	+	0.41	(0.392,0.424]	chr2	129373	535	INTRON	INTRON	GULP1	ENSG00000144366.16	ENST00000409843.5:ENST00000409830.6:ENST00000410051.5:ENST00000479019.5:ENST00000409927.5:ENST00000409805.5:ENST00000359135.7:ENST00000409580.5:ENST00000409637.7:ENST00000409609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr20	6012388	6012487	9562671	0	+	0.414141	(0.392,0.424]	chr20	946986	21	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr20	18139840	18139938	9604671	0	+	0.397959	(0.392,0.424]	chr20	948277	9	INTRON	INTRON	KAT14:PET117	ENSG00000149474.15:ENSG00000232838.4	ENST00000677174.1:ENST00000677573.1:ENST00000377681.8:ENST00000676992.1:ENST00000678777.1:ENST00000688188.1:ENST00000432901.4:ENST00000677266.1:ENST00000677610.1:ENST00000676935.1:ENST00000435364.8:ENST00000464792.2:ENST00000678772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.54701	4.862555	5.1781	0.00102713	2.48959e-5	0.0276375	0.00122627
chr5	177252053	177252153	3400950	0	+	0.34	(0.32,0.36]	chr5	312136	2	SS5_PROX	SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	3.70951	4.862435	6.01536	0.00201951	9.59726e-9	0.0510613	9.74486e-7
chr4	41952564	41952663	2613921	0	+	0.50505	(0.49,0.526]	chr4	250339	28	INTRON	INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.81887	4.862205	5.90554	1.1017e-4	1.93601e-9	0.00452792	2.18285e-7
chr1	246205026	246205126	915506	0	-	0.42	(0.392,0.424]	chr1	100961	114	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr10	32338714	32338814	6102731	0	-	0.4	(0.392,0.424]	chr10	547013	324	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr15	43484505	43484604	8147361	0	-	0.393939	(0.392,0.424]	chr15	754749	31	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr2	27656751	27656844	1408528	0	-	0.397849	(0.392,0.424]	chr2	146540	8	INTRON	INTRON	SUPT7L	ENSG00000119760.16	ENST00000337768.10:ENST00000404798.6:ENST00000406540.5:ENST00000405491.5:ENST00000464789.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr3	38470549	38470649	1837989	0	+	0.41	(0.392,0.424]	chr3	186012	158	INTRON	INTRON	ACVR2B	ENSG00000114739.14	ENST00000352511.5:ENST00000465020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr3	54636944	54637043	1889635	0	+	0.424242	(0.392,0.424]	chr3	192400	87	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr4	83053358	83053457	2670711	0	+	0.414141	(0.392,0.424]	chr4	254658	30	INTRON	INTRON	COPS4	ENSG00000138663.9	ENST00000509093.5:ENST00000509317.5:ENST00000264389.7:ENST00000506443.5:ENST00000503682.5:ENST00000511653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr7	131391870	131391969	4549689	0	+	0.393939	(0.392,0.424]	chr7	409236	25	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr9	124400655	124400754	5731932	0	-	0.424242	(0.392,0.424]	chr9	513733	18	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.61293	4.86209	5.11125	8.49057e-4	3.31137e-5	0.0240064	0.00159224
chr1	46071161	46071261	601472	0	-	0.36	(0.32,0.36]	chr1	67514	37	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5:ENST00000493202.1:ENST00000425892.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr10	87866081	87866172	5927314	0	+	0.32967	(0.32,0.36]	chr10	531283	1	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000487939.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr15	99697192	99697292	8099410	0	+	0.33	(0.32,0.36]	chr15	748855	64	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000354410.9:ENST00000558812.5:ENST00000685785.1:ENST00000557785.5:ENST00000557942.6:ENST00000338042.11:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr17	59048319	59048408	8972123	0	-	0.359551	(0.32,0.36]	chr17	864015	1	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr2	242128854	242128954	1368506	0	+	0.33	(0.32,0.36]	chr2	141479	60	INTRON	INTRON	LINC01881	ENSG00000220804.10	ENST00000456398.5:ENST00000692555.1:ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000416103.2:ENST00000433444.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr3	158799331	158799431	2059277	0	+	0.36	(0.32,0.36]	chr3	205174	154	INTRON	INTRON	MFSD1	ENSG00000118855.21	ENST00000486568.5:ENST00000491804.1:ENST00000465739.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr3	161228834	161228933	2073916	0	+	0.333333	(0.32,0.36]	chr3	205599	11	INTRON	INTRON	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr4	113181202	113181301	2718394	0	+	0.353535	(0.32,0.36]	chr4	258370	63	INTRON	INTRON	ANK2	ENSG00000145362.21	ENST00000672356.1:ENST00000672955.1:ENST00000671825.1:ENST00000672312.1:ENST00000672830.1:ENST00000672402.1:ENST00000671793.1:ENST00000672088.1:ENST00000673044.1:ENST00000672696.1:ENST00000672315.1:ENST00000672684.1:ENST00000672934.1:ENST00000673546.1:ENST00000673573.1:ENST00000671854.1:ENST00000672350.1:ENST00000672731.1:ENST00000682189.1:ENST00000683360.1:ENST00000671756.1:ENST00000671809.1:ENST00000671863.1:ENST00000671906.1:ENST00000672090.1:ENST00000672177.1:ENST00000672759.1:ENST00000672965.1:ENST00000673109.1:ENST00000672209.1:ENST00000672362.1:ENST00000672793.1:ENST00000672068.1:ENST00000673298.1:ENST00000672880.1:ENST00000672990.1:ENST00000673430.1:ENST00000671893.1:ENST00000672246.1:ENST00000672930.1:ENST00000673334.1:ENST00000673453.1:ENST00000673555.1:ENST00000673255.1:ENST00000503423.6:ENST00000683310.1:ENST00000683070.1:ENST00000673536.1:ENST00000506722.5:ENST00000503271.5:ENST00000684681.1:ENST00000672986.1:ENST00000671951.1:ENST00000671704.1:ENST00000672221.1:ENST00000684727.1:ENST00000672366.1:ENST00000672502.1:ENST00000671762.1:ENST00000671727.1:ENST00000682211.1:ENST00000672251.1:ENST00000672854.1:ENST00000672045.1:ENST00000682346.1:ENST00000504454.5:ENST00000357077.9:ENST00000683568.1:ENST00000672779.1:ENST00000394537.7:ENST00000264366.10:ENST00000683595.1:ENST00000671971.1:ENST00000672240.1:ENST00000673240.1:ENST00000673363.1:ENST00000682678.1:ENST00000682900.1:ENST00000683089.1:ENST00000511380.1:ENST00000515034.1:ENST00000671882.1:ENST00000634436.1:ENST00000673943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr6	13684499	13684599	4005923	0	-	0.33	(0.32,0.36]	chr6	362804	253	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr6	38025748	38025848	3772645	0	+	0.35	(0.32,0.36]	chr6	345076	216	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr8	26656101	26656200	4955454	0	+	0.333333	(0.32,0.36]	chr8	443892	5	UTR3	UTR3:EXON_MRNA	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.42963	4.861405	5.29318	0.00312289	1.5251e-5	0.0697855	8.01855e-4
chr2	128009868	128009968	1563251	0	-	0.34	(0.32,0.36]	chr2	162317	2	SS5_PROX	SS5_PROX:INTRON	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.68389	4.86069	5.03749	9.65678e-5	1.67087e-6	0.00399919	1.09706e-4
chr1	113602436	113602536	265022	0	+	0.34	(0.32,0.36]	chr1	27241	75	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.02125	4.86012	5.69899	3.53532e-4	3.81705e-7	0.0122629	2.90385e-5
chr7	114950078	114950178	4516760	0	+	0.34	(0.32,0.36]	chr7	406855	73	INTRON	INTRON	MDFIC	ENSG00000135272.13	ENST00000393486.6:ENST00000431629.5:ENST00000427207.5:ENST00000498196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.02125	4.86012	5.69899	3.53532e-4	3.81705e-7	0.0122629	2.90385e-5
chr9	125792021	125792120	5488071	0	+	0.424242	(0.392,0.424]	chr9	490714	60	INTRON	INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000497091.1:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000491787.7:ENST00000447726.6:ENST00000673571.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.60865	4.8599499999999995	5.11125	3.31137e-5	1.06475e-6	0.00159224	7.43219e-5
chr20	53328962	53329062	9676172	0	+	0.34	(0.32,0.36]	chr20	955971	720	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10:ENST00000603338.2:ENST00000605656.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	4.58302	4.859635000000001	5.13625	7.13152e-9	1.75027e-11	7.41948e-7	2.60849e-9
chrX	77652353	77652453	10383796	0	-	0.29	[0,0.32]	chrX	1030477	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	34	2	4.60084	4.8577200000000005	5.1146	9.02357e-9	1e-12	9.29849e-7	1.72912e-10
chr11	95792035	95792134	6471918	0	+	0.383838	(0.36,0.392]	chr11	584911	9	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	41	2	4.41046	4.8576999999999995	5.30494	2.70273e-12	1e-12	4.417e-10	1.73382e-10
chr17	50184847	50184940	8963033	0	-	0.623656	(0.57,0.629]	chr17	862382	9	UTR3	UTR3:EXON_MRNA	COL1A1	ENSG00000108821.14	ENST00000225964.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.46827	4.85749	5.24671	5.2773e-4	2.15311e-6	0.0167673	1.3963e-4
chr19	11091814	11091913	9286835	0	+	0.464646	(0.459,0.49]	chr19	897476	5	INTRON	INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	4.73219	4.856	4.97981	3.36273e-5	3.0068e-8	0.00159406	2.8316e-6
chr10	122855255	122855352	6277908	0	-	0.412371	(0.392,0.424]	chr10	561892	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FAM24B	ENSG00000213185.7	ENST00000368898.8:ENST00000462859.5:ENST00000368896.1:ENST00000489000.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	3.96221	4.855964999999999	5.74972	1.96069e-4	1.25981e-7	0.00725539	1.05791e-5
chr2	62890668	62890768	1050450	0	+	0.42	(0.392,0.424]	chr2	111869	90	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.96221	4.855964999999999	5.74972	1.96069e-4	1.25981e-7	0.00725539	1.05791e-5
chrX	108586015	108586114	10199424	0	+	0.323232	(0.32,0.36]	chrX	1015780	11	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000483338.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.90902	4.855615	5.80221	5.03152e-4	2.13657e-7	0.0161742	1.69216e-5
chr1	67415839	67415938	646016	0	-	0.333333	(0.32,0.36]	chr1	71787	1	INTRON	INTRON	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1:ENST00000462814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	4.57052	4.8550450000000005	5.13957	6.71414e-5	2.95142e-6	0.00291649	1.84947e-4
chr1	178115866	178115966	358795	0	+	0.39	(0.36,0.392]	chr1	39070	208	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.73928	4.85323	4.96718	1.24104e-4	5.12952e-7	0.0049353	3.78931e-5
chr3	67512779	67512879	2329300	0	-	0.43	(0.424,0.459]	chr3	225831	35	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.80014	4.853045	5.90595	3.54639e-4	1.00338e-8	0.0120332	1.01215e-6
chr17	64620516	64620616	8986353	0	-	0.37	(0.36,0.392]	chr17	866211	135	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	3.91092	4.8527249999999995	5.79453	5.00165e-4	9.49031e-8	0.0160179	8.06088e-6
chr13	51372208	51372308	7528241	0	-	0.44	(0.424,0.459]	chr13	692425	25	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000483441.5:ENST00000490542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	4.65351	4.852449999999999	5.05139	4.27641e-5	1.8873e-7	0.00199812	1.54537e-5
chr2	88055125	88055225	1507136	0	-	0.53	(0.526,0.57]	chr2	156263	1	SS5_PROX	SS5_PROX:INTRON	KRCC1	ENSG00000172086.9	ENST00000672766.1:ENST00000347055.4	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	4.59836	4.851775	5.10519	1.89233e-11	1.84046e-11	2.79646e-9	2.7267e-9
chr18	12610092	12610191	9182201	0	-	0.474747	(0.459,0.49]	chr18	884908	213	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.48645	4.8511	6.21575	6.16705e-5	2.91337e-11	0.00276144	4.19646e-9
chr1	149972945	149973044	761408	0	-	0.474747	(0.459,0.49]	chr1	82551	13	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	4.76501	4.850235	4.93546	1.46149e-4	1.66582e-9	0.00564049	1.91035e-7
chr10	99923435	99923534	6233918	0	-	0.565657	(0.526,0.57]	chr10	557486	95	INTRON	INTRON	DNMBP	ENSG00000107554.17	ENST00000324109.9:ENST00000636706.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	4.52211	4.850175	5.17824	4.3785e-11	8.2282e-12	6.17372e-9	1.28096e-9
chr2	182311503	182311603	1635336	0	-	0.39	(0.36,0.392]	chr2	168577	467	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.83113	4.849355	5.86758	6.41601e-4	5.98276e-8	0.0193935	5.2159e-6
chr5	59283713	59283813	3475081	0	-	0.37	(0.36,0.392]	chr5	319239	77	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.83113	4.849355	5.86758	6.41601e-4	5.98276e-8	0.0193935	5.2159e-6
chr7	158794126	158794226	4912625	0	-	0.37	(0.36,0.392]	chr7	439103	4	SS3_PROX	SS3_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.83113	4.849355	5.86758	6.41601e-4	5.98276e-8	0.0193935	5.2159e-6
chrX	103310843	103310925	10397445	0	-	0.695122	(0.629,1]	chrX	1031954	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BEX2	ENSG00000133134.12	ENST00000372677.8:ENST00000536889.1:ENST00000372674.5:ENST00000449185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.39444	4.84867	5.3029	6.41849e-4	7.37915e-7	0.0196462	5.32314e-5
chr1	119722424	119722514	275702	0	+	0.377778	(0.36,0.392]	chr1	28417	4	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000496756.2:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr11	9880663	9880763	6558271	0	-	0.37	(0.36,0.392]	chr11	596414	219	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000688344.1:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000689597.1:ENST00000530741.2:ENST00000689674.1:ENST00000690003.1:ENST00000693181.1:ENST00000533770.6:ENST00000420722.3:ENST00000688417.1:ENST00000687210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr12	123210960	123211059	7312323	0	-	0.383838	(0.36,0.392]	chr12	675385	4	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr2	9622182	9622281	1377879	0	-	0.383838	(0.36,0.392]	chr2	142652	16	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr2	159587426	159587526	1588735	0	-	0.39	(0.36,0.392]	chr2	164474	312	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr2	241323715	241323815	1362882	0	+	0.39	(0.36,0.392]	chr2	140862	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000492978.5:ENST00000360051.7:ENST00000407017.5:ENST00000445030.5:ENST00000428524.5:ENST00000469434.5:ENST00000616972.4:ENST00000495463.5:ENST00000482304.5:ENST00000475474.5:ENST00000401990.5:ENST00000469175.5:ENST00000407971.5:ENST00000461048.5:ENST00000457335.5:ENST00000436795.5:ENST00000494824.5:ENST00000411484.5:ENST00000462147.5:ENST00000434955.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000484740.1:ENST00000473479.5:ENST00000464128.5:ENST00000441533.5:ENST00000467971.5:ENST00000425899.5:ENST00000443492.5:ENST00000437066.5:ENST00000429791.5:ENST00000420786.5:ENST00000475823.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr3	142740801	142740901	2035304	0	+	0.39	(0.36,0.392]	chr3	203402	39	INTRON	INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10:ENST00000460401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr3	177186580	177186679	2499896	0	-	0.373737	(0.36,0.392]	chr3	239263	153	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr3	195699000	195699100	2146115	0	+	0.38	(0.36,0.392]	chr3	210394	2	PRIMIRNA	PRIMIRNA	MIR570	ENSG00000207650.1	ENST00000384917.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr5	40737822	40737921	3453337	0	-	0.363636	(0.36,0.392]	chr5	317721	71	INTRON	INTRON	TTC33	ENSG00000113638.14	ENST00000636863.1:ENST00000637375.1:ENST00000636106.1:ENST00000337702.5:ENST00000503936.6:ENST00000504251.6:ENST00000511730.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr6	165475122	165475222	4265476	0	-	0.37	(0.36,0.392]	chr6	386826	82	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000649273.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000648884.1:ENST00000649761.1:ENST00000678161.1:ENST00000366882.7:ENST00000676767.1:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000678462.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr7	117120818	117120917	4524682	0	+	0.363636	(0.36,0.392]	chr7	407343	7	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000465133.5:ENST00000477742.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr9	107295162	107295262	5461125	0	+	0.39	(0.36,0.392]	chr9	487797	99	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.65673	4.84797	5.03921	7.48315e-4	9.59768e-5	0.0220209	0.00399331
chr12	20560410	20560510	6843970	0	+	0.33	(0.32,0.36]	chr12	625049	33	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4	protein_coding	protein_coding	protein_coding	protein_coding	87	456	2	4.7003	4.84793	4.99556	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	161174754	161174854	315665	0	+	0.39	(0.36,0.392]	chr1	35601	36	INTRON	INTRON	PPOX	ENSG00000143224.18	ENST00000497522.5:ENST00000495483.5:ENST00000535223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr17	29715959	29716059	8904116	0	-	0.39	(0.36,0.392]	chr17	853473	125	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr18	49052290	49052389	9223724	0	-	0.383838	(0.36,0.392]	chr18	888339	77	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr2	62894264	62894364	1050486	0	+	0.37	(0.36,0.392]	chr2	111869	126	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr3	142402013	142402110	2458268	0	-	0.381443	(0.36,0.392]	chr3	235965	11	INTRON	INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr3	196066466	196066558	2529218	0	-	0.380435	(0.36,0.392]	chr3	242404	5	INTRON	INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr8	96257856	96257956	5221995	0	-	0.39	(0.36,0.392]	chr8	467436	1	SS5_PROX	SS5_PROX:INTRON	MTERF3	ENSG00000156469.9	ENST00000523821.5:ENST00000287025.4	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr8	130216794	130216894	5275780	0	-	0.39	(0.36,0.392]	chr8	471473	17	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000519169.5:ENST00000520342.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.72821	4.847695	4.96718	6.09158e-4	1.24104e-4	0.0188826	0.0049353
chr14	100493911	100494011	7753109	0	+	0.44	(0.424,0.459]	chr14	711703	94	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000557710.5:ENST00000542471.2:ENST00000555865.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	64	2	4.59335	4.84671	5.10007	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	89833430	89833529	3834672	0	+	0.434343	(0.424,0.459]	chr6	351400	17	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	3.91878	4.8448150000000005	5.77085	5.64013e-8	5.32819e-8	5.08613e-6	4.72329e-6
chr1	246248522	246248622	915941	0	-	0.48	(0.459,0.49]	chr1	100961	549	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.56515	4.84454	6.12393	8.21277e-4	1.31318e-10	0.0238805	1.71854e-8
chr16	69610114	69610214	8422529	0	+	0.32	[0,0.32]	chr16	788942	412	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.79564	4.844094999999999	4.89255	5.01883e-4	2.15736e-7	0.0161742	1.70234e-5
chr8	139802934	139803034	5289132	0	-	0.44	(0.424,0.459]	chr8	472641	704	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000522504.5:ENST00000521700.5:ENST00000519482.1:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	55	2	4.5008	4.843755	5.18671	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	32108157	32108257	7584555	0	+	0.44	(0.424,0.459]	chr14	698928	134	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	4.63564	4.843515	5.05139	4.27641e-5	1.40003e-10	0.00199812	1.85644e-8
chr12	68815327	68815427	6946692	0	+	0.46	(0.459,0.49]	chr12	635986	3	SS3_PROX	SS3_PROX:INTRON	MDM2	ENSG00000135679.27	ENST00000258149.11:ENST00000393412.7:ENST00000311420.13:ENST00000493419.1:ENST00000393417.8:ENST00000258148.11:ENST00000539479.6:ENST00000523991.5:ENST00000543323.5:ENST00000393415.7:ENST00000393416.7:ENST00000481186.6:ENST00000545204.2:ENST00000544561.6:ENST00000665020.1:ENST00000666617.1:ENST00000671567.1:ENST00000393410.5:ENST00000496959.5:ENST00000299252.8:ENST00000360430.6:ENST00000517852.5:ENST00000546048.5:ENST00000540352.5:ENST00000542502.5:ENST00000537182.5:ENST00000536089.5:ENST00000393413.7:ENST00000350057.9:ENST00000348801.7:ENST00000478070.2:ENST00000471946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	4.35001	4.842325000000001	5.33464	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	128167395	128167473	5744510	0	-	0.538462	(0.526,0.57]	chr9	515036	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000485862.5:ENST00000538431.5:ENST00000357558.9:ENST00000461765.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000485001.1:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	4.72818	4.84168	4.95518	2.63103e-10	1.24889e-12	3.32606e-8	2.13425e-10
chr8	125099718	125099818	5085069	0	+	0.46	(0.459,0.49]	chr8	455086	48	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	4.13232	4.8408	5.54928	1.41387e-5	2.53394e-7	7.54814e-4	1.97194e-5
chr1	160221210	160221310	785590	0	-	0.39	(0.36,0.392]	chr1	87707	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000477163.1:ENST00000461888.5:ENST00000490368.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.65673	4.84051	5.02429	7.48315e-4	1.54207e-8	0.0220209	1.51982e-6
chr6	125987887	125987987	3872383	0	+	0.37	(0.36,0.392]	chr6	354135	3	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.65673	4.84051	5.02429	7.48315e-4	1.54207e-8	0.0220209	1.51982e-6
chr5	37338516	37338615	3443627	0	-	0.535354	(0.526,0.57]	chr5	316924	2	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	4.32974	4.838570000000001	5.3474	1.55497e-6	1.05485e-6	1.02493e-4	7.33447e-5
chr5	177457705	177457757	3670953	0	-	0.557692	(0.526,0.57]	chr5	333982	2	CDS	CDS:UTR3:EXON_MRNA	DBN1	ENSG00000113758.14	ENST00000309007.9:ENST00000393565.6:ENST00000292385.9:ENST00000472831.5:ENST00000512501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	4.19532	4.8385	5.48168	5.88525e-6	2.6732e-7	3.44579e-4	2.09843e-5
chr9	123042416	123042516	5483722	0	+	0.35	(0.32,0.36]	chr9	490121	83	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	39	2	4.74209	4.8383	4.93451	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	8414056	8414156	9566465	0	+	0.26	[0,0.32]	chr20	947085	420	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	4.24175	4.83766	5.43357	6.90565e-5	8.40147e-6	0.00300464	4.71048e-4
chr17	43298151	43298251	8938443	0	-	0.51	(0.49,0.526]	chr17	859071	680	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	21	169	2	3.96219	4.83758	5.71297	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	154426097	154426197	304387	0	+	0.45	(0.424,0.459]	chr1	32924	200	INTRON	INTRON	IL6R	ENSG00000160712.13	ENST00000622330.4:ENST00000344086.8:ENST00000368485.8:ENST00000512471.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr1	201959651	201959750	399592	0	+	0.434343	(0.424,0.459]	chr1	42912	17	INTRON	INTRON	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr13	51406386	51406486	7528601	0	-	0.44	(0.424,0.459]	chr13	692495	32	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr15	25429790	25429889	8108505	0	-	0.454545	(0.424,0.459]	chr15	750016	23	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr15	36939133	36939233	8132344	0	-	0.44	(0.424,0.459]	chr15	752353	352	INTRON	INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000607277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr4	139861357	139861457	3018234	0	-	0.44	(0.424,0.459]	chr4	282332	1303	INTRON	INTRON	MAML3	ENSG00000196782.13	ENST00000509479.6:ENST00000502696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr5	116168464	116168564	3286516	0	+	0.45	(0.424,0.459]	chr5	302259	339	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr8	9596882	9596982	4923497	0	+	0.44	(0.424,0.459]	chr8	440203	161	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chrX	41757394	41757494	10328631	0	-	0.43	(0.424,0.459]	chrX	1025534	114	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000642361.2:ENST00000644770.1:ENST00000468986.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chrX	150486689	150486789	10238472	0	+	0.45	(0.424,0.459]	chrX	1019457	125	INTRON	INTRON	MAMLD1	ENSG00000013619.15	ENST00000262858.8:ENST00000683453.1:ENST00000426613.5:ENST00000682016.1:ENST00000682253.1:ENST00000683696.1:ENST00000370401.7:ENST00000432680.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.40599	4.836774999999999	5.26756	0.00154565	8.0232e-6	0.0389999	4.54299e-4
chr11	122144505	122144605	6763656	0	-	0.38	(0.36,0.392]	chr11	617560	278	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000650497.1:ENST00000664908.1:ENST00000648209.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000656793.1:ENST00000663296.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000660603.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000666085.1:ENST00000534297.2:ENST00000534782.4	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	3.52068	4.83663	6.15258	0.00324516	1.50388e-9	0.0730386	1.73555e-7
chr17	75232438	75232527	8799765	0	+	0.449438	(0.424,0.459]	chr17	837344	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000579324.5:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000579557.5:ENST00000583070.5:ENST00000580879.5:ENST00000540768.5:ENST00000582681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	4.63564	4.8363700000000005	5.0371	1.40003e-10	1e-12	1.85644e-8	1.72912e-10
chr13	33250770	33250870	7482593	0	-	0.43	(0.424,0.459]	chr13	689271	449	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.48802	4.83595	5.18388	0.00121831	1.21594e-5	0.0326347	6.58699e-4
chr13	35363915	35364015	7357860	0	+	0.43	(0.424,0.459]	chr13	679869	112	INTRON	INTRON	NBEA	ENSG00000172915.20	ENST00000400445.8:ENST00000379939.7:ENST00000686320.1:ENST00000688626.1:ENST00000688363.1:ENST00000689207.1:ENST00000686386.1:ENST00000629018.4:ENST00000692737.1:ENST00000691097.1:ENST00000688312.1:ENST00000691637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.48802	4.83595	5.18388	0.00121831	1.21594e-5	0.0326347	6.58699e-4
chr13	99059533	99059633	7560090	0	-	0.44	(0.424,0.459]	chr13	695313	436	INTRON	INTRON	DOCK9	ENSG00000088387.21	ENST00000652315.1:ENST00000427887.2:ENST00000479769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.48802	4.83595	5.18388	0.00121831	1.21594e-5	0.0326347	6.58699e-4
chr16	2915576	2915676	8305235	0	+	0.45	(0.424,0.459]	chr16	773215	1	SS5_PROX	SS5_PROX:INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000571140.5:ENST00000416288.6:ENST00000570425.5:ENST00000573525.1:ENST00000570759.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.48802	4.83595	5.18388	0.00121831	1.21594e-5	0.0326347	6.58699e-4
chr3	197983344	197983442	2151597	0	+	0.44898	(0.424,0.459]	chr3	211130	25	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000473676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.48802	4.83595	5.18388	0.00121831	1.21594e-5	0.0326347	6.58699e-4
chrX	40071536	40071636	10323949	0	-	0.32	[0,0.32]	chrX	1025099	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding	448	2190	2	4.80413	4.835414999999999	4.8667	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	36502461	36502528	8915905	0	-	0.432836	(0.424,0.459]	chr17	854770	1	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	4.29889	4.83522	5.37155	1.12945e-5	2.42251e-6	6.02727e-4	1.53938e-4
chr1	120789196	120789295	278354	0	+	0.515152	(0.49,0.526]	chr1	28693	36	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.4628	4.834815	5.20683	7.611e-4	3.9703e-6	0.0225125	2.39291e-4
chr2	224581658	224581758	1706185	0	-	0.5	(0.49,0.526]	chr2	175521	120	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.4628	4.834815	5.20683	7.611e-4	3.9703e-6	0.0225125	2.39291e-4
chr21	37444859	37444959	9813700	0	+	0.5	(0.49,0.526]	chr21	972944	141	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.4628	4.834815	5.20683	7.611e-4	3.9703e-6	0.0225125	2.39291e-4
chr3	14149547	14149646	2181714	0	-	0.494949	(0.49,0.526]	chr3	213066	2	INTRON	INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	4.4628	4.834815	5.20683	7.611e-4	3.9703e-6	0.0225125	2.39291e-4
chrX	73650339	73650439	10163451	0	+	0.33	(0.32,0.36]	chrX	1012957	654	INTRON	INTRON	CHIC1	ENSG00000204116.12	ENST00000373502.10:ENST00000373504.10:ENST00000498407.5:ENST00000498318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	48	2	4.65128	4.833475	5.01567	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	46099352	46099450	9964153	0	+	0.683673	(0.629,1]	chr22	991773	4	INTRON	INTRON	MIRLET7BHG	ENSG00000197182.15	ENST00000381051.6:ENST00000691934.1:ENST00000443490.6:ENST00000687637.1:ENST00000686767.1:ENST00000435439.5:ENST00000360737.4:ENST00000686090.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.52269	4.832935	5.14318	3.10525e-4	3.40591e-6	0.0106515	2.08838e-4
chr14	58265847	58265943	7840109	0	-	0.4375	(0.424,0.459]	chr14	722074	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	ARMH4:PSMA3-AS1	ENSG00000139971.15:ENSG00000257621.9	ENST00000554218.1:ENST00000554360.5:ENST00000654187.2:ENST00000667365.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	5	44	2	4.72848	4.832905	4.93733	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	41962354	41962454	5161188	0	-	0.49	(0.459,0.49]	chr8	462350	41	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	3.44795	4.83185	6.21575	4.86333e-6	2.91337e-11	2.86966e-4	4.19646e-9
chr12	11156538	11156638	7087904	0	-	0.26	[0,0.32]	chr12	651870	350	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	15	78	2	4.20361	4.830475	5.45734	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	24823311	24823411	77799	0	+	0.32	[0,0.32]	chr1	7940	87	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr10	96899098	96899198	5950462	0	+	0.31	[0,0.32]	chr10	533673	126	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr11	33155610	33155710	6588811	0	-	0.32	[0,0.32]	chr11	599301	103	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1:ENST00000438862.6:ENST00000431742.2:ENST00000524556.1:ENST00000524775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr11	117256835	117256935	6505223	0	+	0.31	[0,0.32]	chr11	588373	95	INTRON	INTRON	RNF214	ENSG00000167257.11	ENST00000300650.9:ENST00000531452.5:ENST00000531287.5:ENST00000530849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr14	66630335	66630435	7660856	0	+	0.27	[0,0.32]	chr14	705173	788	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr15	52655173	52655271	8175276	0	-	0.27551	[0,0.32]	chr15	758348	33	INTRON	INTRON	FAM214A	ENSG00000047346.13	ENST00000619572.5:ENST00000534964.6:ENST00000261844.11:ENST00000399202.8:ENST00000562135.5:ENST00000566768.5:ENST00000561490.5:ENST00000561543.5:ENST00000568863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr17	63305602	63305702	8773355	0	+	0.27	[0,0.32]	chr17	834680	374	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8:ENST00000583356.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr2	164817341	164817441	1599280	0	-	0.21	[0,0.32]	chr2	165559	164	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5:ENST00000456693.5:ENST00000448708.5:ENST00000439313.5:ENST00000444537.5:ENST00000414843.5:ENST00000445474.2:ENST00000483743.6:ENST00000496396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr20	9106430	9106530	9572454	0	+	0.28	[0,0.32]	chr20	947343	97	INTRON	INTRON	PLCB4	ENSG00000101333.19	ENST00000378501.3:ENST00000378493.6:ENST00000441846.5:ENST00000685110.1:ENST00000687765.1:ENST00000688837.1:ENST00000686871.1:ENST00000685148.1:ENST00000414679.7:ENST00000688325.1:ENST00000693502.1:ENST00000693544.1:ENST00000693752.1:ENST00000687299.1:ENST00000685859.1:ENST00000686584.1:ENST00000689910.1:ENST00000685298.1:ENST00000378473.9:ENST00000690729.1:ENST00000691007.1:ENST00000686313.1:ENST00000684997.1:ENST00000687446.1:ENST00000686976.1:ENST00000407043.7:ENST00000685823.1:ENST00000686117.1:ENST00000685568.1:ENST00000692085.1:ENST00000690960.1:ENST00000693492.1:ENST00000689010.1:ENST00000686163.1:ENST00000693160.1:ENST00000691112.1:ENST00000686893.1:ENST00000685482.1:ENST00000686532.1:ENST00000685446.1:ENST00000689588.1:ENST00000686253.1:ENST00000692395.1:ENST00000693090.1:ENST00000437503.6:ENST00000693005.1:ENST00000685310.1:ENST00000688656.1:ENST00000278655.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr3	158181979	158182079	2054014	0	+	0.31	[0,0.32]	chr3	204858	452	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr3	195298978	195299078	2525580	0	-	0.29	[0,0.32]	chr3	241876	13	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000450200.1:ENST00000475905.5:ENST00000635383.1:ENST00000484296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr4	143533179	143533277	2749737	0	+	0.295918	[0,0.32]	chr4	261292	23	INTRON	INTRON	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr5	146238131	146238231	3349352	0	+	0.29	[0,0.32]	chr5	307494	3	INTRON	INTRON	RBM27	ENSG00000091009.8	ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr7	111212209	111212309	4815824	0	-	0.28	[0,0.32]	chr7	431926	2483	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr8	17939190	17939269	4938568	0	+	0.265823	[0,0.32]	chr8	441232	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr8	73709677	73709776	5194880	0	-	0.30303	[0,0.32]	chr8	465450	1	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000519818.5:ENST00000522061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.79564	4.83042	4.8652	5.01883e-4	4.11137e-4	0.0161742	0.0138446
chr5	131631064	131631164	3594191	0	-	0.42	(0.392,0.424]	chr5	326341	260	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	4.71951	4.83033	4.94115	1.28627e-10	1e-12	1.72632e-8	1.72912e-10
chr5	176936738	176936838	3669549	0	-	0.41	(0.392,0.424]	chr5	333802	171	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	4.42363	4.83005	5.23647	1.49344e-8	2.4131e-10	1.47914e-6	3.08506e-8
chrX	53217536	53217615	10344133	0	-	0.417722	(0.392,0.424]	chrX	1027177	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM5C	ENSG00000126012.13	ENST00000687695.1:ENST00000685641.1:ENST00000685423.1:ENST00000693277.1:ENST00000688699.1:ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000691505.1:ENST00000375379.7:ENST00000375383.7:ENST00000465402.2:ENST00000687928.1:ENST00000685539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	4.42363	4.83005	5.23647	1.49344e-8	2.4131e-10	1.47914e-6	3.08506e-8
chr14	74127283	74127383	7701720	0	+	0.45	(0.424,0.459]	chr14	707883	131	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	79	2	4.57721	4.83	5.08279	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	105373951	105374051	4800147	0	-	0.55	(0.526,0.57]	chr7	431095	670	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	4.71261	4.829705	4.9468	4.79912e-10	1e-12	5.90331e-8	1.73382e-10
chr11	76538635	76538727	6451799	0	+	0.456522	(0.424,0.459]	chr11	582821	3	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5:ENST00000524451.1:ENST00000531641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	4.20361	4.829560000000001	5.45551	1.79381e-5	1.50668e-6	9.13813e-4	9.96778e-5
chr15	101199048	101199148	8291297	0	-	0.56	(0.526,0.57]	chr15	769715	96	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	4.45268	4.826005	5.19933	4.16513e-6	4.08411e-7	2.48371e-4	3.06417e-5
chr17	56867673	56867773	8747715	0	+	0.54	(0.526,0.57]	chr17	832765	50	UTR3	UTR3:EXON_MRNA	DGKE	ENSG00000153933.10	ENST00000284061.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	4.45268	4.826005	5.19933	4.16513e-6	4.08411e-7	2.48371e-4	3.06417e-5
chr7	7566208	7566306	4624858	0	-	0.530612	(0.526,0.57]	chr7	416851	4	EXON_LNCRNA	EXON_LNCRNA	MIOS-DT	ENSG00000272894.5	ENST00000609497.5	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	4.04709	4.825805	5.60452	2.21154e-5	6.77869e-8	0.00112425	5.95616e-6
chr7	129939023	129939122	4843990	0	-	0.525253	(0.49,0.526]	chr7	433954	14	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.08493	4.82455	5.56417	0.00395081	1.40942e-7	0.0816719	1.1686e-5
chr4	147926231	147926331	2755187	0	+	0.43	(0.424,0.459]	chr4	261798	127	INTRON	INTRON	ARHGAP10	ENSG00000071205.12	ENST00000336498.8:ENST00000506054.5:ENST00000507661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	4.11093	4.8242650000000005	5.5376	5.36389e-5	4.83052e-7	0.00243585	3.58077e-5
chrX	70137201	70137300	10154019	0	+	0.434343	(0.424,0.459]	chrX	1011869	20	INTRON	INTRON	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	4.45728	4.823815	5.19035	2.77305e-9	1.67757e-10	3.07081e-7	2.18199e-8
chr1	227286528	227286628	876893	0	-	0.44	(0.424,0.459]	chr1	97605	320	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	91	2	4.81042	4.823255	4.8360900000000004	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	159142765	159142864	1190267	0	+	0.50505	(0.49,0.526]	chr2	125142	61	INTRON	INTRON	TANC1	ENSG00000115183.15	ENST00000263635.8:ENST00000464096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.15714	4.823180000000001	5.48922	0.00319561	2.5213e-7	0.0699484	2.01203e-5
chr15	92801080	92801179	8276175	0	-	0.292929	[0,0.32]	chr15	768887	126	INTRON	INTRON	FAM174B	ENSG00000185442.13	ENST00000557398.2:ENST00000555971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	4.68069	4.822655	4.96462	5.55329e-8	5.05568e-9	5.01996e-6	5.38161e-7
chr5	59587298	59587398	3478124	0	-	0.35	(0.32,0.36]	chr5	319265	9	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	45	235	2	4.80963	4.82249	4.83535	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	67313507	67313606	7667144	0	+	0.414141	(0.392,0.424]	chr14	705408	4	INTRON	INTRON	PALS1	ENSG00000072415.10	ENST00000677382.1:ENST00000676464.1:ENST00000677222.1:ENST00000555925.5:ENST00000261681.9:ENST00000678380.1:ENST00000677835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	4.30978	4.822315	5.33485	7.17587e-8	4.44158e-11	6.27925e-6	6.22225e-9
chr20	28581528	28581624	9721797	0	-	0.260417	[0,0.32]	chr20	962242	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FRG1CP	ENSG00000282826.3	ENST00000650751.1:ENST00000651774.1:ENST00000687441.1:ENST00000358464.10:ENST00000684933.1:ENST00000687491.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	12	2	4.53638	4.821765	5.10715	7.53496e-5	8.41855e-6	0.00322158	4.71048e-4
chr1	230938885	230938985	881557	0	-	0.51	(0.49,0.526]	chr1	98300	1	SS5_PROX	SS5_PROX:INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8:ENST00000481976.6:ENST00000522821.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.73694	4.82124	5.90554	3.40684e-6	1.93601e-9	2.10826e-4	2.18285e-7
chr12	124783296	124783393	7317943	0	-	0.556701	(0.526,0.57]	chr12	676165	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.44169	4.8205100000000005	5.19933	8.21639e-4	4.16513e-6	0.0238903	2.48371e-4
chr19	45365954	45366053	9510872	0	-	0.555556	(0.526,0.57]	chr19	937977	4	INTRON	INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391941.6:ENST00000485403.6:ENST00000586131.6:ENST00000591309.5:ENST00000586737.5:ENST00000586441.1:ENST00000586856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.44169	4.8205100000000005	5.19933	8.21639e-4	4.16513e-6	0.0238903	2.48371e-4
chr4	119421512	119421599	3003671	0	-	0.551724	(0.526,0.57]	chr4	281040	3	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	14	2	4.44169	4.8205100000000005	5.19933	8.21639e-4	4.16513e-6	0.0238903	2.48371e-4
chr6	20435595	20435695	3725189	0	+	0.57	(0.526,0.57]	chr6	338533	314	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.44169	4.8205100000000005	5.19933	8.21639e-4	4.16513e-6	0.0238903	2.48371e-4
chr21	41178775	41178875	9816726	0	+	0.44	(0.424,0.459]	chr21	973271	98	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.29249	4.819735	6.34698	5.87704e-5	1.28346e-11	0.00266966	1.9463e-9
chr1	93319907	93320005	695447	0	-	0.44898	(0.424,0.459]	chr1	75327	13	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000429859.5:ENST00000424517.3:ENST00000661111.1:ENST00000450843.5:ENST00000440778.5:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000436200.2:ENST00000670231.1:ENST00000432741.5	lncRNA	lncRNA	lncRNA	lncRNA	3	26	2	3.03857	4.818865000000001	6.59916	5.63002e-4	1e-12	0.0178211	1.73382e-10
chr6	127446407	127446502	4187031	0	-	0.442105	(0.424,0.459]	chr6	381139	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	KIAA0408	ENSG00000189367.15	ENST00000483725.8:ENST00000368281.1:ENST00000465254.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	4.36966	4.81861	5.26756	8.0232e-6	3.96287e-6	4.54299e-4	2.39291e-4
chr3	107559159	107559259	1947087	0	+	0.32	[0,0.32]	chr3	196164	324	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	4.45912	4.818160000000001	5.1772	5.87341e-5	1.18389e-5	0.00262682	6.49715e-4
chr7	124864728	124864828	4839049	0	-	0.27	[0,0.32]	chr7	433348	2	SS5_PROX	SS5_PROX:INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6:ENST00000429326.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	4.45912	4.818160000000001	5.1772	5.87341e-5	1.18389e-5	0.00262682	6.49715e-4
chr9	6473990	6474090	5329593	0	+	0.32	[0,0.32]	chr9	477040	128	INTRON	INTRON	UHRF2	ENSG00000147854.17	ENST00000468435.6:ENST00000276893.10:ENST00000450508.1:ENST00000484159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	4.45912	4.818160000000001	5.1772	5.87341e-5	1.18389e-5	0.00262682	6.49715e-4
chr9	37258786	37258885	5380322	0	+	0.292929	[0,0.32]	chr9	480690	719	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	4.45912	4.818160000000001	5.1772	5.87341e-5	1.18389e-5	0.00262682	6.49715e-4
chr9	120633930	120634030	5714462	0	-	0.3	[0,0.32]	chr9	512304	108	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.45912	4.818160000000001	5.1772	5.87341e-5	1.18389e-5	0.00262682	6.49715e-4
chr7	131109469	131109552	4849226	0	-	0.493976	(0.49,0.526]	chr7	434523	3	SS5_PROX	SS5_PROX:INTRON	LINC-PINT	ENSG00000231721.7	ENST00000451786.5	lncRNA	lncRNA	lncRNA	lncRNA	17	168	2	4.60438	4.81766	5.03094	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	12544143	12544243	7090582	0	-	0.43	(0.424,0.459]	chr12	652089	223	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1:ENST00000536236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.01346	4.81762	5.62178	0.00778514	2.83203e-7	0.130982	2.17914e-5
chr10	60784961	60785028	5866432	0	+	0.402985	(0.392,0.424]	chr10	526445	1	SS5_PROX	SS5_PROX:INTRON	CDK1	ENSG00000170312.17	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	3.96221	4.81734	5.67247	1.96069e-4	1e-12	0.00725539	1.72912e-10
chr22	31577881	31577947	9933622	0	+	0.530303	(0.526,0.57]	chr22	986728	1	SS3_PROX	SS3_PROX:INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000476010.5:ENST00000484806.1:ENST00000452250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	113	2	4.74744	4.81672	4.886	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	52928918	52929018	7831970	0	-	0.42	(0.392,0.424]	chr14	721392	6	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	3.74846	4.81534	5.88222	1.33045e-6	1e-12	9.05848e-5	1.72912e-10
chr1	179074994	179075092	365068	0	+	0.55102	(0.526,0.57]	chr1	39406	30	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	4.59829	4.813215	5.02814	4.99738e-8	1.23415e-10	4.53531e-6	1.62694e-8
chr11	122238668	122238768	6764607	0	-	0.38	(0.36,0.392]	chr11	617603	39	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1:ENST00000528381.1	lncRNA	lncRNA	lncRNA	lncRNA	3	19	2	3.82871	4.81162	5.79453	1.70072e-6	9.49031e-8	1.11415e-4	8.06088e-6
chr9	124602807	124602907	5732954	0	-	0.53	(0.526,0.57]	chr9	513813	71	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.07767	4.8100950000000005	5.54252	0.00403601	1.66713e-7	0.0817225	1.36401e-5
chr1	44255458	44255556	591680	0	-	0.459184	(0.424,0.459]	chr1	66576	71	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000462341.1:ENST00000452396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	4.72848	4.8095300000000005	4.89058	8.77883e-9	1e-12	9.05568e-7	1.72912e-10
chr11	122417873	122417972	6766410	0	-	0.454545	(0.424,0.459]	chr11	617641	43	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1:ENST00000648576.1	lncRNA	lncRNA	lncRNA	lncRNA	4	35	2	4.01698	4.808965000000001	5.60095	1.35151e-8	1e-12	1.35132e-6	1.72912e-10
chr14	30966008	30966108	7793107	0	-	0.53	(0.526,0.57]	chr14	717582	16	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.69524	4.807875	5.92051	3.03531e-4	1.10942e-9	0.0107298	1.30307e-7
chr8	30455603	30455703	4965159	0	+	0.61	(0.57,0.629]	chr8	444788	14	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5:ENST00000522708.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.68132	4.807785	4.93425	1.50304e-4	2.91369e-5	0.00577248	0.00141183
chr12	104268228	104268328	7002607	0	+	0.6	(0.57,0.629]	chr12	640143	25	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.74833	4.807625	4.86692	1.07277e-4	4.28317e-5	0.00442346	0.0019752
chr16	74641365	74641465	8600901	0	-	0.59	(0.57,0.629]	chr16	810674	30	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.74833	4.807625	4.86692	1.07277e-4	4.28317e-5	0.00442346	0.0019752
chr7	157166593	157166690	4598010	0	+	0.618557	(0.57,0.629]	chr7	413980	17	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.74833	4.807625	4.86692	1.07277e-4	4.28317e-5	0.00442346	0.0019752
chr10	27170133	27170228	5823827	0	+	0.4	(0.392,0.424]	chr10	523487	3	CDS	CDS:EXON_MRNA	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10:ENST00000477034.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.75797	4.807255	4.85654	1.84333e-4	2.01084e-7	0.00688171	1.60882e-5
chr3	155908036	155908134	2047405	0	+	0.387755	(0.36,0.392]	chr3	204555	14	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	48	2	3.91175	4.80632	5.70089	4.14346e-11	1e-12	5.84021e-9	1.73382e-10
chr7	156829641	156829741	4900037	0	-	0.47	(0.459,0.49]	chr7	438633	25	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	4.0059	4.805825	5.60575	3.28131e-7	1e-12	2.53115e-5	1.72912e-10
chr10	103106806	103106906	6242382	0	-	0.39	(0.36,0.392]	chr10	558939	1	SS3_PROX	SS3_PROX:INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000675985.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000487810.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	3.45885	4.805715	6.15258	4.24507e-4	1.50388e-9	0.0140677	1.73555e-7
chr1	91849486	91849586	689105	0	-	0.43	(0.424,0.459]	chr1	74890	481	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000417833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	4.71718	4.8056149999999995	4.89405	3.1417e-11	2.62712e-12	4.5174e-9	4.29562e-10
chr12	20433615	20433715	6842700	0	+	0.24	[0,0.32]	chr12	625044	630	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	4.79486	4.80492	4.81498	3.34826e-7	8.40022e-10	2.57546e-5	9.97822e-8
chr15	88511331	88511431	8270188	0	-	0.47	(0.459,0.49]	chr15	767830	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DET1	ENSG00000140543.15	ENST00000557842.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	29	2	4.4955	4.8049	5.1143	5.33756e-7	4.9806e-11	3.92587e-5	6.98308e-9
chr10	110884270	110884367	5978046	0	+	0.463918	(0.459,0.49]	chr10	537220	8	INTRON	INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000467574.5:ENST00000483670.5:ENST00000280154.12:ENST00000444997.1:ENST00000492932.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.20634	4.803515	5.40069	0.00276656	1.15324e-6	0.0641652	7.95154e-5
chr16	84980082	84980181	8613405	0	-	0.464646	(0.459,0.49]	chr16	812402	4	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000566909.1:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.20634	4.803515	5.40069	0.00276656	1.15324e-6	0.0641652	7.95154e-5
chr5	160109213	160109313	3653609	0	-	0.49	(0.459,0.49]	chr5	332452	2	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.20634	4.803515	5.40069	0.00276656	1.15324e-6	0.0641652	7.95154e-5
chr7	114311607	114311707	4512606	0	+	0.47	(0.459,0.49]	chr7	406674	231	INTRON	INTRON	FOXP2	ENSG00000128573.27	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000495516.1:ENST00000634411.1:ENST00000635109.1:ENST00000634623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.20634	4.803515	5.40069	0.00276656	1.15324e-6	0.0641652	7.95154e-5
chr9	91351100	91351200	5655441	0	-	0.49	(0.459,0.49]	chr9	506380	75	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.20634	4.803515	5.40069	0.00276656	1.15324e-6	0.0641652	7.95154e-5
chr9	129511095	129511194	5508849	0	+	0.424242	(0.392,0.424]	chr9	493869	76	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00963	ENSG00000204054.14	ENST00000652803.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000666041.1:ENST00000656234.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000665880.1:ENST00000419300.3:ENST00000423918.5:ENST00000666559.1:ENST00000668919.1:ENST00000653386.1:ENST00000657389.1:ENST00000668206.1:ENST00000654286.1:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000623185.4:ENST00000427778.1:ENST00000667499.1:ENST00000663083.1:ENST00000671598.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	15	2	3.7075	4.80327	5.89904	9.40427e-4	2.16736e-8	0.0266969	2.09062e-6
chr12	64107335	64107435	6935300	0	+	0.39	(0.36,0.392]	chr12	634705	96	INTRON	INTRON	SRGAP1	ENSG00000196935.10	ENST00000631006.3:ENST00000355086.8:ENST00000543397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	4.38376	4.8031299999999995	5.2225	2.06042e-5	1.64803e-5	0.00103061	8.48507e-4
chr15	89685633	89685732	8272068	0	-	0.383838	(0.36,0.392]	chr15	768284	13	INTRON	INTRON	PEX11A	ENSG00000166821.9	ENST00000557982.1:ENST00000561224.5:ENST00000300056.8:ENST00000561257.1:ENST00000559170.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	4.38376	4.8031299999999995	5.2225	2.06042e-5	1.64803e-5	0.00103061	8.48507e-4
chr2	23776688	23776788	1394417	0	-	0.37	(0.36,0.392]	chr2	144489	107	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	4.38376	4.8031299999999995	5.2225	2.06042e-5	1.64803e-5	0.00103061	8.48507e-4
chr11	78498392	78498492	6665411	0	-	0.39	(0.36,0.392]	chr11	611224	48	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	4.16662	4.802989999999999	5.43936	9.16296e-5	3.42448e-6	0.00387303	2.10826e-4
chr4	67814318	67814418	2638955	0	+	0.39	(0.36,0.392]	chr4	252558	115	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	4.16662	4.802989999999999	5.43936	9.16296e-5	3.42448e-6	0.00387303	2.10826e-4
chr2	183139617	183139717	1230287	0	+	0.42	(0.392,0.424]	chr2	129019	56	INTRON	INTRON	NUP35	ENSG00000163002.13	ENST00000409798.5:ENST00000374930.7:ENST00000479162.5:ENST00000295119.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.68238	4.8027	4.92302	1.45314e-4	3.20208e-7	0.00569484	2.47387e-5
chr7	111548765	111548865	4819199	0	-	0.41	(0.392,0.424]	chr7	431966	158	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5:ENST00000492938.1:ENST00000452753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.68238	4.8027	4.92302	1.45314e-4	3.20208e-7	0.00569484	2.47387e-5
chr3	197609145	197609245	2536314	0	-	0.48	(0.459,0.49]	chr3	243240	84	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.27284	4.80251	5.33218	0.00227779	1.78412e-6	0.0552099	1.1709e-4
chr7	127691303	127691401	4534665	0	+	0.489796	(0.459,0.49]	chr7	407802	42	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000461056.5:ENST00000468621.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.27284	4.80251	5.33218	0.00227779	1.78412e-6	0.0552099	1.1709e-4
chr16	81454824	81454924	8450065	0	+	0.54	(0.526,0.57]	chr16	791027	89	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	4.11947	4.800575	5.48168	2.6732e-7	4.7259e-8	2.09843e-5	4.23605e-6
chr4	164307449	164307549	3077319	0	-	0.54	(0.526,0.57]	chr4	284905	722	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000508725.5:ENST00000505391.5:ENST00000515471.5:ENST00000510075.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.88187	4.799795	5.71772	8.23795e-5	1.72001e-8	0.00351856	1.66972e-6
chr10	74025347	74025447	5893722	0	+	0.59	(0.57,0.629]	chr10	529588	81	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.21821	4.799485000000001	5.38076	0.00185391	5.85803e-7	0.0459841	4.27724e-5
chr17	306780	306879	8828522	0	-	0.585859	(0.57,0.629]	chr17	842459	2	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.21821	4.799485000000001	5.38076	0.00185391	5.85803e-7	0.0459841	4.27724e-5
chr12	50151454	50151553	7163086	0	-	0.494949	(0.49,0.526]	chr12	659041	25	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	4.10998	4.799325	5.48867	3.02009e-10	1e-12	3.8111e-8	1.73382e-10
chr1	746097	746194	490282	0	-	0.474227	(0.459,0.49]	chr1	51807	9	INTRON	INTRON	ENSG00000228327	ENSG00000228327.4	ENST00000506640.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr1	151080657	151080757	296527	0	+	0.49	(0.459,0.49]	chr1	31627	71	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr10	63327833	63327933	6147540	0	-	0.46	(0.459,0.49]	chr10	550092	587	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr13	94585217	94585315	7549462	0	-	0.489796	(0.459,0.49]	chr13	694259	16	INTRON	INTRON	TGDS	ENSG00000088451.11	ENST00000261296.7:ENST00000498294.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr17	44726911	44727011	8722657	0	+	0.49	(0.459,0.49]	chr17	828482	35	INTRON	INTRON	DBF4B	ENSG00000161692.18	ENST00000393547.6:ENST00000528353.5:ENST00000528766.5:ENST00000315005.8:ENST00000526924.5:ENST00000526915.5:ENST00000525140.5:ENST00000531699.5:ENST00000532789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr17	82621208	82621308	9035058	0	-	0.49	(0.459,0.49]	chr17	873526	2	SS5_PROX	SS5_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr6	38414601	38414701	4054085	0	-	0.47	(0.459,0.49]	chr6	369505	113	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr6	70515530	70515629	3812688	0	+	0.474747	(0.459,0.49]	chr6	349185	107	INTRON	INTRON	FAM135A	ENSG00000082269.17	ENST00000505769.5:ENST00000515323.5:ENST00000418814.7:ENST00000457062.6:ENST00000361499.7:ENST00000370479.7:ENST00000194672.11:ENST00000505868.1:ENST00000393299.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr9	100429105	100429205	5452088	0	+	0.49	(0.459,0.49]	chr9	486883	2	SS3_PROX	SS3_PROX:INTRON	MSANTD3	ENSG00000066697.15	ENST00000395067.7:ENST00000398977.2:ENST00000374885.5:ENST00000622639.4:ENST00000374886.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chrX	3685344	3685444	10255531	0	-	0.48	(0.459,0.49]	chrX	1021822	102	INTRON	INTRON	PRKX	ENSG00000183943.6	ENST00000262848.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chrX	72374972	72375071	10369970	0	-	0.464646	(0.459,0.49]	chrX	1029636	228	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.76501	4.7988599999999995	4.83271	1.46149e-4	1.09213e-4	0.00564049	0.00442392
chr7	102402418	102402517	4498878	0	+	0.464646	(0.459,0.49]	chr7	405174	24	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.85937	4.798805	5.73824	1.54766e-4	2.1921e-8	0.00599593	2.0899e-6
chr2	160397969	160398069	1593009	0	-	0.45	(0.424,0.459]	chr2	164961	302	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000409972.5:ENST00000491781.5:ENST00000428519.1:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	3.56675	4.798115	6.02948	7.38392e-5	1.8912e-9	0.0032006	2.1436e-7
chr1	155009857	155009957	305558	0	+	0.57	(0.526,0.57]	chr1	33126	2	SS3_PROX	SS3_PROX:INTRON	ZBTB7B	ENSG00000160685.14	ENST00000417934.6:ENST00000368426.3:ENST00000535420.6:ENST00000483226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	4.71261	4.79757	4.88253	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	21319692	21319792	9071983	0	+	0.49	(0.459,0.49]	chr18	876596	769	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	205	2	4.31326	4.796315	5.27937	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	10370818	10370918	3120028	0	+	0.34	(0.32,0.36]	chr5	288981	158	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	4.75201	4.79552	4.83903	1.17755e-9	9.64646e-11	1.3764e-7	1.30287e-8
chr1	244848952	244849048	910738	0	-	0.364583	(0.36,0.392]	chr1	100829	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	4.52282	4.79491	5.067	1.58282e-8	4.85192e-9	1.55617e-6	5.20289e-7
chr19	13119053	13119153	9293939	0	+	0.59	(0.57,0.629]	chr19	898679	2	INTRON	INTRON	NACC1	ENSG00000160877.6	ENST00000586171.2:ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	4.48966	4.794295	5.09893	7.91825e-6	7.76828e-8	4.54299e-4	6.78568e-6
chr3	161429502	161429597	2481323	0	-	0.526316	(0.526,0.57]	chr3	238030	5	EXON_PSEUDO	EXON_PSEUDO	RPL23AP42	ENSG00000234851.4	ENST00000471152.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	146	1330	2	4.73415	4.78878	4.84341	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	74314488	74314588	8598503	0	-	0.5	(0.49,0.526]	chr16	810400	12	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	12	120	2	4.78659	4.78781	4.78903	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	150492982	150493082	10238535	0	+	0.42	(0.392,0.424]	chrX	1019457	188	INTRON	INTRON	MAMLD1	ENSG00000013619.15	ENST00000262858.8:ENST00000683453.1:ENST00000426613.5:ENST00000682016.1:ENST00000682253.1:ENST00000683696.1:ENST00000370401.7:ENST00000432680.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	4.75797	4.787775	4.81758	2.01084e-7	6.29448e-8	1.60882e-5	5.585e-6
chrX	129554146	129554246	10222424	0	+	0.33	(0.32,0.36]	chrX	1017784	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	OCRL	ENSG00000122126.18	ENST00000486673.1:ENST00000371113.9:ENST00000357121.5:ENST00000691455.1:ENST00000693473.1:ENST00000646010.1:ENST00000689093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.70951	4.78767	5.86583	0.00201951	6.04906e-8	0.0510613	5.40424e-6
chr12	70530535	70530634	6952433	0	+	0.313131	[0,0.32]	chr12	636664	24	INTRON	INTRON	ENSG00000258168	ENSG00000258168.6	ENST00000549460.5:ENST00000667427.1:ENST00000548687.5:ENST00000667308.1:ENST00000551438.5:ENST00000547656.1:ENST00000546836.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr2	24583775	24583875	951856	0	+	0.32	[0,0.32]	chr2	103897	190	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000469850.5:ENST00000405141.5:ENST00000407230.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr2	232782772	232782871	1340643	0	+	0.30303	[0,0.32]	chr2	138514	56	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000424038.2:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr20	44173534	44173634	9747743	0	-	0.32	[0,0.32]	chr20	965632	128	INTRON	INTRON	JPH2	ENSG00000149596.7	ENST00000372980.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr22	17926865	17926965	9982454	0	-	0.24	[0,0.32]	chr22	993630	196	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr3	197098213	197098313	2533289	0	-	0.26	[0,0.32]	chr3	242988	68	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr3	197099411	197099511	2533301	0	-	0.3	[0,0.32]	chr3	242988	80	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr5	80681288	80681388	3232521	0	+	0.27	[0,0.32]	chr5	298728	18	INTRON	INTRON	MSH3	ENSG00000113318.11	ENST00000265081.7:ENST00000670357.1:ENST00000667069.1:ENST00000658259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr6	165777925	165778025	4268519	0	-	0.27	[0,0.32]	chr6	386882	664	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr7	110807499	110807599	4811772	0	-	0.28	[0,0.32]	chr7	431911	1421	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr8	65607911	65608010	5182812	0	-	0.30303	[0,0.32]	chr8	464441	20	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr8	125109273	125109373	5085168	0	+	0.32	[0,0.32]	chr8	455098	64	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5:ENST00000523549.1:ENST00000519712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.39782	4.78751	5.1772	0.00334699	5.87341e-5	0.0734189	0.00262682
chr1	27487386	27487486	552009	0	-	0.11	[0,0.32]	chr1	61297	581	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr1	144983935	144984035	745999	0	-	0.28	[0,0.32]	chr1	79979	232	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr11	33340967	33341047	6368038	0	+	0.3	[0,0.32]	chr11	570413	1	CDS	CDS:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr2	58061188	58061288	1041580	0	+	0.27	[0,0.32]	chr2	111210	23	INTRON	INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9:ENST00000428021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr4	169509966	169510065	3087139	0	-	0.272727	[0,0.32]	chr4	285697	1	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr8	30642660	30642760	5153516	0	-	0.31	[0,0.32]	chr8	461376	50	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000523499.5:ENST00000518599.5:ENST00000518445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chrX	24874326	24874426	10107777	0	+	0.26	[0,0.32]	chrX	1007765	303	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.46657	4.78686	5.10715	0.00288167	7.53496e-5	0.0662445	0.00322158
chr16	28614179	28614279	8540632	0	-	0.68	(0.629,1]	chr16	803168	41	EXON_MRNA	EXON_MRNA:INTRON	SULT1A1	ENSG00000196502.13	ENST00000395609.6:ENST00000350842.8:ENST00000564818.5:ENST00000567998.5:ENST00000562058.5:ENST00000563493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.74169	4.786855	4.83202	7.88558e-5	4.13761e-5	0.00339056	0.00192437
chr5	176365663	176365746	3397839	0	+	0.795181	(0.629,1]	chr5	311742	1	CDS	CDS:EXON_MRNA	ARL10	ENSG00000175414.7	ENST00000310389.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.74169	4.786855	4.83202	7.88558e-5	4.13761e-5	0.00339056	0.00192437
chr2	1657495	1657594	1370155	0	-	0.636364	(0.629,1]	chr2	141796	26	INTRON	INTRON	PXDN	ENSG00000130508.11	ENST00000252804.9:ENST00000478155.5:ENST00000433670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.94001	4.786815	5.63362	7.28993e-6	1.82535e-8	4.19849e-4	1.78915e-6
chr3	121694638	121694737	2404733	0	-	0.363636	(0.36,0.392]	chr3	230482	10	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695040.1:ENST00000695108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	140	2	4.36011	4.78672	5.21333	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	15311437	15311536	1383675	0	-	0.313131	[0,0.32]	chr2	143329	18	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	4.49591	4.785865	5.07582	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	73012333	73012433	3212651	0	+	0.58	(0.57,0.629]	chr5	296614	54	INTRON	INTRON	FCHO2	ENSG00000157107.14	ENST00000430046.7:ENST00000507345.6:ENST00000512348.5:ENST00000287761.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.25802	4.785410000000001	5.3128	1.55189e-6	9.9438e-7	1.02479e-4	7.00342e-5
chr1	169116623	169116723	333595	0	+	0.5	(0.49,0.526]	chr1	37417	3	SS5_PROX	SS5_PROX:INTRON	ATP1B1	ENSG00000143153.14	ENST00000367816.5:ENST00000690184.1:ENST00000688755.1:ENST00000692003.1:ENST00000688406.1:ENST00000689522.1:ENST00000691106.1:ENST00000367815.9:ENST00000686702.1:ENST00000685155.1:ENST00000685792.1:ENST00000691753.1:ENST00000494797.2:ENST00000691802.1:ENST00000687745.1:ENST00000685762.1:ENST00000687182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr10	93047332	93047432	5939469	0	+	0.51	(0.49,0.526]	chr10	532764	327	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10:ENST00000495132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr12	112484673	112484771	7025887	0	+	0.510204	(0.49,0.526]	chr12	643094	21	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1:ENST00000635652.1:ENST00000690472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr14	34576636	34576735	7802412	0	-	0.525253	(0.49,0.526]	chr14	718230	4	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000555541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr5	171987620	171987720	3663122	0	-	0.51	(0.49,0.526]	chr5	333089	100	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr9	71695206	71695305	5625771	0	-	0.494949	(0.49,0.526]	chr9	504335	2	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000377066.9:ENST00000542935.5:ENST00000396272.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.64127	4.78534	4.92941	2.4929e-4	4.32628e-5	0.0089494	0.00200309
chr17	31310104	31310204	8696739	0	+	0.34	(0.32,0.36]	chr17	823478	101	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	4.27744	4.785310000000001	5.29318	6.03386e-5	1.5251e-5	0.00268144	8.01855e-4
chr1	37893753	37893853	575118	0	-	0.51	(0.49,0.526]	chr1	64883	19	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr17	46323563	46323663	8950164	0	-	0.5	(0.49,0.526]	chr17	860928	26	INTRON	INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr17	62487096	62487196	8767919	0	+	0.5	(0.49,0.526]	chr17	834345	6	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000579450.5:ENST00000577616.1:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000583690.6:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr21	39508997	39509027	9815920	0	+	0.5	(0.49,0.526]	chr21	973216	1	CDS	CDS:EXON_MRNA:INTRON	SH3BGR	ENSG00000185437.15	ENST00000380637.7:ENST00000380634.5:ENST00000458295.5:ENST00000440288.6:ENST00000380631.5:ENST00000333634.10:ENST00000452550.5:ENST00000423596.5:ENST00000447939.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr5	32377815	32377915	3432055	0	-	0.5	(0.49,0.526]	chr5	315681	130	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr7	6040203	6040297	4619983	0	-	0.5	(0.49,0.526]	chr7	416195	12	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.71489	4.785135	4.85538	1.81396e-4	6.26806e-5	0.0069054	0.00277665
chr19	11183788	11183887	9435474	0	-	0.444444	(0.424,0.459]	chr19	925493	47	INTRON	INTRON	KANK2	ENSG00000197256.11	ENST00000586659.6:ENST00000589359.5:ENST00000589894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.51855	4.7849699999999995	5.05139	4.27641e-5	8.67885e-7	0.00199812	6.19626e-5
chrX	30843843	30843943	10298016	0	-	0.36	(0.32,0.36]	chrX	1024133	9	UTR3	UTR3:EXON_MRNA:INTRON	TAB3	ENSG00000157625.16	ENST00000378933.5:ENST00000288422.4:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5:ENST00000378928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.59803	4.783645	5.96926	0.00267453	3.15048e-8	0.0637459	2.93512e-6
chr11	469113	469213	6292544	0	+	0.59	(0.57,0.629]	chr11	563546	82	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr12	120726231	120726331	7033923	0	+	0.6	(0.57,0.629]	chr12	644461	3	SS5_PROX	SS5_PROX:INTRON	ACADS	ENSG00000122971.9	ENST00000539690.1:ENST00000242592.9:ENST00000411593.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr16	25118780	25118879	8358784	0	+	0.606061	(0.57,0.629]	chr16	779290	64	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr2	1657892	1657992	1370159	0	-	0.59	(0.57,0.629]	chr2	141796	30	INTRON	INTRON	PXDN	ENSG00000130508.11	ENST00000252804.9:ENST00000478155.5:ENST00000433670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr22	19204258	19204357	9985500	0	-	0.626263	(0.57,0.629]	chr22	993987	24	INTRON	INTRON	CLTCL1	ENSG00000070371.16	ENST00000427926.6:ENST00000621271.4:ENST00000622493.4:ENST00000617926.4:ENST00000615606.4:ENST00000617103.4:ENST00000611723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr9	130606499	130606598	5514567	0	+	0.59596	(0.57,0.629]	chr9	494898	106	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.46827	4.7836	5.09893	5.2773e-4	7.91825e-6	0.0167673	4.54299e-4
chr1	145091634	145091734	747077	0	-	0.6	(0.57,0.629]	chr1	79985	961	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.53486	4.7831	5.03134	3.95206e-4	1.22122e-5	0.0135724	6.58806e-4
chr19	58494605	58494705	9548466	0	-	0.61	(0.57,0.629]	chr19	945212	106	INTRON	INTRON	SLC27A5	ENSG00000083807.10	ENST00000595851.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	15	2	4.53486	4.7831	5.03134	3.95206e-4	1.22122e-5	0.0135724	6.58806e-4
chr10	112578326	112578426	5981179	0	+	0.38	(0.36,0.392]	chr10	537524	396	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	4.38376	4.782365	5.18097	1.64803e-5	8.72996e-10	8.48507e-4	1.04054e-7
chr6	145634507	145634594	4225119	0	-	0.448276	(0.424,0.459]	chr6	383928	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	EPM2A	ENSG00000112425.16	ENST00000638717.1:ENST00000450221.6:ENST00000639423.1:ENST00000639049.1:ENST00000639799.1:ENST00000367519.9:ENST00000638554.1:ENST00000611340.5:ENST00000435470.2:ENST00000638262.1:ENST00000639465.1:ENST00000638597.1:ENST00000640351.1:ENST00000640225.1:ENST00000639859.1:ENST00000640980.1:ENST00000638783.1:ENST00000638778.1:ENST00000639648.1:ENST00000639849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	4.20999	4.782015	5.35404	1.2965e-9	4.031e-12	1.51434e-7	6.4979e-10
chr2	36400884	36400984	989813	0	+	0.41	(0.392,0.424]	chr2	107814	37	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.47186	4.781045	6.09023	0.00366403	1.13607e-9	0.0766409	1.32549e-7
chr1	28427336	28427436	88896	0	+	0.52	(0.49,0.526]	chr1	9640	195	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	4.0726	4.78091	5.48922	1.93553e-5	2.5213e-7	9.87839e-4	2.01203e-5
chr1	235492023	235492121	892362	0	-	0.357143	(0.32,0.36]	chr1	99383	24	INTRON	INTRON	B3GALNT2	ENSG00000162885.14	ENST00000366600.8:ENST00000675193.1:ENST00000676288.1:ENST00000675555.1:ENST00000612859.4:ENST00000313984.3:ENST00000494378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	4.16471	4.780235	5.39576	9.22891e-5	9.86331e-6	0.00388567	5.39872e-4
chr6	63734003	63734103	3803596	0	+	0.36	(0.32,0.36]	chr6	348891	81	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000505138.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.16471	4.780235	5.39576	9.22891e-5	9.86331e-6	0.00388567	5.39872e-4
chr7	80627527	80627626	4451664	0	+	0.353535	(0.32,0.36]	chr7	400009	9	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000309881.11:ENST00000480599.6:ENST00000534394.5:ENST00000526804.5:ENST00000478292.2:ENST00000438020.5:ENST00000436384.5:ENST00000428497.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	4.16471	4.780235	5.39576	9.22891e-5	9.86331e-6	0.00388567	5.39872e-4
chr11	102170752	102170852	6479313	0	+	0.47	(0.459,0.49]	chr11	585360	78	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.51255	4.780200000000001	5.04785	6.3564e-4	2.39418e-5	0.0193151	0.00119556
chr18	9836603	9836703	9059181	0	+	0.47	(0.459,0.49]	chr18	875444	206	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2:ENST00000583921.5:ENST00000577796.5:ENST00000577371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.51255	4.780200000000001	5.04785	6.3564e-4	2.39418e-5	0.0193151	0.00119556
chr2	64539772	64539872	1054197	0	+	0.49	(0.459,0.49]	chr2	112267	148	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000695868.1:ENST00000498706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.51255	4.780200000000001	5.04785	6.3564e-4	2.39418e-5	0.0193151	0.00119556
chr5	171938200	171938300	3662625	0	-	0.48	(0.459,0.49]	chr5	333078	234	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.51255	4.780200000000001	5.04785	6.3564e-4	2.39418e-5	0.0193151	0.00119556
chr11	6561981	6562081	6308289	0	+	0.48	(0.459,0.49]	chr11	565944	23	INTRON	INTRON	DNHD1	ENSG00000179532.13	ENST00000254579.11:ENST00000534210.6:ENST00000524401.2:ENST00000531903.5:ENST00000526027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr12	106811706	106811806	7012143	0	+	0.48	(0.459,0.49]	chr12	640875	133	INTRON	INTRON	RIC8B	ENSG00000111785.21	ENST00000550215.5:ENST00000392839.6:ENST00000548914.5:ENST00000355478.6:ENST00000392837.9:ENST00000549643.5:ENST00000552619.1:ENST00000462949.5:ENST00000470628.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr17	18286902	18287000	8889054	0	-	0.479592	(0.459,0.49]	chr17	850902	10	INTRON	INTRON	TOP3A	ENSG00000177302.15	ENST00000321105.10:ENST00000542570.5:ENST00000469739.6:ENST00000584582.5:ENST00000582981.5:ENST00000580095.5:ENST00000582122.1:ENST00000581536.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr19	45716520	45716616	9513417	0	-	0.479167	(0.459,0.49]	chr19	938461	14	EXON_MRNA	EXON_MRNA:INTRON	FBXO46:ENSG00000279407	ENSG00000177051.6:ENSG00000279407.1	ENST00000317683.4:ENST00000586899.1:ENST00000623179.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr2	148008629	148008729	1579176	0	-	0.48	(0.459,0.49]	chr2	163462	262	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr20	44586003	44586103	9658005	0	+	0.48	(0.459,0.49]	chr20	954097	4	INTRON	INTRON	PKIG	ENSG00000168734.14	ENST00000372891.7:ENST00000372892.7:ENST00000372894.7:ENST00000372889.5:ENST00000372887.5:ENST00000477390.5:ENST00000372886.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr9	117236537	117236637	5710358	0	-	0.48	(0.459,0.49]	chr9	512022	214	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.57976	4.779785	4.97981	4.98571e-4	3.36273e-5	0.0160179	0.00159406
chr12	120788677	120788777	7301253	0	-	0.35	(0.32,0.36]	chr12	673968	37	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000534966.1:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.75647	4.7793399999999995	5.80221	6.44559e-5	2.13657e-7	0.00284455	1.69216e-5
chr2	177252926	177253026	1627909	0	-	0.48	(0.459,0.49]	chr2	168003	183	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	82	2	4.75798	4.779255	4.80053	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	129746755	129746855	5747672	0	-	0.47	(0.459,0.49]	chr9	515798	65	INTRON	INTRON	PTGES	ENSG00000148344.11	ENST00000481476.1:ENST00000340607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	4.70263	4.77876	4.85489	3.39545e-9	9.94393e-12	3.71453e-7	1.53617e-9
chr17	30395010	30395109	8689739	0	+	0.363636	(0.36,0.392]	chr17	822638	94	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr17	62028144	62028244	8980019	0	-	0.37	(0.36,0.392]	chr17	865106	166	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000583958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr19	36401414	36401513	9484183	0	-	0.373737	(0.36,0.392]	chr19	933347	55	INTRON	INTRON	ZFP82	ENSG00000181007.9	ENST00000445543.2:ENST00000392161.4	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr20	2120711	2120811	9552646	0	+	0.39	(0.36,0.392]	chr20	945779	29	INTRON	INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr3	142112799	142112898	2456200	0	-	0.363636	(0.36,0.392]	chr3	235712	106	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000467072.5:ENST00000464782.5:ENST00000475734.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5:ENST00000491667.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr7	87961138	87961238	4455951	0	+	0.38	(0.36,0.392]	chr7	400494	256	INTRON	INTRON	ADAM22	ENSG00000008277.15	ENST00000398204.8:ENST00000413139.2:ENST00000439864.5:ENST00000683525.1:ENST00000412441.5:ENST00000398201.8:ENST00000265727.11:ENST00000398209.7:ENST00000684002.1:ENST00000398203.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.26063	4.777775	5.29492	0.00451705	1.51392e-5	0.0875511	7.85619e-4
chr20	13810985	13811084	9583145	0	+	0.464646	(0.459,0.49]	chr20	947993	17	INTRON	INTRON	NDUFAF5	ENSG00000101247.18	ENST00000378081.9:ENST00000378106.10:ENST00000463598.1:ENST00000475968.5:ENST00000481249.5:ENST00000476536.5:ENST00000479716.5:ENST00000487478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.0059	4.77759	5.54928	3.28131e-7	2.53394e-7	2.53115e-5	1.97194e-5
chr7	55095727	55095827	4390646	0	+	0.5	(0.49,0.526]	chr7	395429	518	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	4.77271	4.777200000000001	4.78169	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	28567321	28567421	5824798	0	+	0.36	(0.32,0.36]	chr10	523623	289	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr11	75913237	75913337	6448173	0	+	0.34	(0.32,0.36]	chr11	582613	8	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000528264.1:ENST00000525872.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr11	76070182	76070282	6449755	0	+	0.33	(0.32,0.36]	chr11	582677	40	INTRON	INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr15	34329037	34329136	8125607	0	-	0.333333	(0.32,0.36]	chr15	751653	104	INTRON	INTRON	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1:ENST00000561120.5:ENST00000559236.5:ENST00000559484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr15	56105267	56105367	8182637	0	-	0.34	(0.32,0.36]	chr15	759035	12	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr16	70344198	70344298	8580788	0	-	0.34	(0.32,0.36]	chr16	809377	17	INTRON	INTRON	DDX19A-DT	ENSG00000261777.6	ENST00000666089.1:ENST00000562077.5:ENST00000570278.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr17	16113200	16113299	8882551	0	-	0.343434	(0.32,0.36]	chr17	849969	39	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000583226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr17	30850673	30850773	8692336	0	+	0.34	(0.32,0.36]	chr17	822978	54	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr17	39531511	39531609	8711320	0	+	0.346939	(0.32,0.36]	chr17	825692	3	UTR3	UTR3:EXON_MRNA:INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000430627.6:ENST00000559663.1:ENST00000584336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr17	61980312	61980411	8979528	0	-	0.333333	(0.32,0.36]	chr17	865059	71	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr2	70079734	70079831	1480454	0	-	0.329897	(0.32,0.36]	chr2	153186	20	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr22	28444972	28445072	10005753	0	-	0.36	(0.32,0.36]	chr22	996542	20	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr22	35920553	35920653	10027528	0	-	0.35	(0.32,0.36]	chr22	998794	801	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr3	154296038	154296138	2475547	0	-	0.33	(0.32,0.36]	chr3	237347	3	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr3	179585845	179585945	2115307	0	+	0.33	(0.32,0.36]	chr3	207086	20	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000484312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr6	165678933	165679033	4267527	0	-	0.36	(0.32,0.36]	chr6	386874	158	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr7	35868408	35868507	4365805	0	+	0.333333	(0.32,0.36]	chr7	393759	44	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000473201.2:ENST00000399035.7:ENST00000425198.1:ENST00000634700.1:ENST00000635420.1:ENST00000634591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr8	140963506	140963606	5300064	0	-	0.36	(0.32,0.36]	chr8	473222	88	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr9	116563599	116563699	5703607	0	-	0.34	(0.32,0.36]	chr9	511909	757	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chrX	24694404	24694504	10105930	0	+	0.36	(0.32,0.36]	chrX	1007569	4	SS5_PROX	SS5_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000678847.1:ENST00000672178.1:ENST00000379068.8:ENST00000677890.1:ENST00000379059.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.7265	4.777165	4.82783	6.12159e-4	4.57616e-4	0.0189985	0.0150584
chr1	150617037	150617137	762483	0	-	0.38	(0.36,0.392]	chr1	82692	154	INTRON	INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr10	112974204	112974303	5983876	0	+	0.383838	(0.36,0.392]	chr10	537567	92	INTRON	INTRON	TCF7L2	ENSG00000148737.17	ENST00000355995.9:ENST00000627217.3:ENST00000534894.5:ENST00000536810.5:ENST00000538897.5:ENST00000542695.5:ENST00000543371.5:ENST00000369397.8:ENST00000355717.9:ENST00000352065.10:ENST00000369395.6:ENST00000545257.6:ENST00000629706.2:ENST00000346198.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr13	96106667	96106767	7414654	0	+	0.37	(0.36,0.392]	chr13	683824	147	INTRON	INTRON	HS6ST3	ENSG00000185352.9	ENST00000376705.4	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr17	7608030	7608129	8861520	0	-	0.373737	(0.36,0.392]	chr17	847739	15	INTRON	INTRON	FXR2	ENSG00000129245.12	ENST00000250113.12:ENST00000571597.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr17	57262987	57263087	8748517	0	+	0.39	(0.36,0.392]	chr17	832978	1	SS3_PROX	SS3_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000579483.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr19	38690010	38690110	9344995	0	+	0.37	(0.36,0.392]	chr19	907170	414	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr2	154411276	154411376	1183953	0	+	0.38	(0.36,0.392]	chr2	124794	18	INTRON	INTRON	GALNT13	ENSG00000144278.15	ENST00000392825.8:ENST00000409237.5:ENST00000487047.1:ENST00000450838.5:ENST00000422126.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr3	146143807	146143906	2467515	0	-	0.383838	(0.36,0.392]	chr3	236606	192	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5:ENST00000480704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.3312	4.77685	5.2225	0.00387074	2.06042e-5	0.078873	0.00103061
chr15	63646182	63646281	8209737	0	-	0.373737	(0.36,0.392]	chr15	761165	1	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.11397	4.7766649999999995	5.43936	3.42448e-6	2.41963e-6	2.10826e-4	1.5318e-4
chr17	37163842	37163942	8917171	0	-	0.41	(0.392,0.424]	chr17	854986	14	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000618575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	4.44207	4.77666	5.11125	3.31137e-5	5.58952e-6	0.00159224	3.2822e-4
chr18	3275266	3275365	9041536	0	+	0.40404	(0.392,0.424]	chr18	874449	18	INTRON	INTRON	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.44207	4.77666	5.11125	3.31137e-5	5.58952e-6	0.00159224	3.2822e-4
chr7	111439372	111439472	4818100	0	-	0.42	(0.392,0.424]	chr7	431941	466	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.03703	4.77642	5.51581	1.48653e-4	1.07176e-6	0.00578975	7.36955e-5
chr16	88041905	88042005	8477659	0	+	0.61	(0.57,0.629]	chr16	792502	35	INTRON	INTRON	BANP	ENSG00000172530.21	ENST00000286122.11:ENST00000393208.6:ENST00000682872.1:ENST00000479780.6:ENST00000626016.2:ENST00000355022.8:ENST00000538234.5:ENST00000393207.5:ENST00000466847.5:ENST00000565242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	4.58375	4.77558	4.96741	5.88691e-11	4.81393e-12	8.23442e-9	7.70681e-10
chr22	23881872	23881969	9905776	0	+	0.494845	(0.49,0.526]	chr22	983844	16	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	110	2	4.60428	4.77548	4.94668	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	45169180	45169280	596479	0	-	0.4	(0.392,0.424]	chr1	67056	806	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	4.53319	4.77508	5.01697	1.61757e-6	7.03248e-9	1.08646e-4	7.35448e-7
chr3	107699276	107699375	1948499	0	+	0.515152	(0.49,0.526]	chr3	196222	142	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5:ENST00000413213.5:ENST00000449271.5:ENST00000425868.5:ENST00000449213.5:ENST00000457496.5:ENST00000429270.1:ENST00000472032.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.26631	4.773865	5.28142	2.46593e-6	2.32598e-6	1.54892e-4	1.50793e-4
chr10	24703816	24703916	6083634	0	-	0.42	(0.392,0.424]	chr10	545331	331	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.15239	4.7735900000000004	5.39479	0.00572894	4.26975e-6	0.105396	2.57151e-4
chr18	666720	666820	9037789	0	+	0.42	(0.392,0.424]	chr18	873857	40	INTRON	INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.15239	4.7735900000000004	5.39479	0.00572894	4.26975e-6	0.105396	2.57151e-4
chr18	7712876	7712976	9046082	0	+	0.4	(0.392,0.424]	chr18	874701	1446	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15239	4.7735900000000004	5.39479	0.00572894	4.26975e-6	0.105396	2.57151e-4
chr2	108617551	108617651	1114496	0	+	0.4	(0.392,0.424]	chr2	119461	99	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15239	4.7735900000000004	5.39479	0.00572894	4.26975e-6	0.105396	2.57151e-4
chr6	161177104	161177203	4249148	0	-	0.424242	(0.392,0.424]	chr6	386532	103	INTRON	INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.15239	4.7735900000000004	5.39479	0.00572894	4.26975e-6	0.105396	2.57151e-4
chr22	41102552	41102651	9951104	0	+	0.373737	(0.36,0.392]	chr22	989833	91	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	4.73928	4.77358	4.80788	5.12952e-7	1.47653e-7	3.78931e-5	1.22253e-5
chr20	53406652	53406752	9676949	0	+	0.41	(0.392,0.424]	chr20	955971	1497	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10:ENST00000603338.2:ENST00000605656.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.96221	4.772675	5.58314	1.96069e-4	7.33041e-7	0.00725539	5.19799e-5
chr12	51007141	51007234	7164669	0	-	0.408602	(0.392,0.424]	chr12	659253	5	INTRON	INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000548193.5:ENST00000646988.1:ENST00000549625.1:ENST00000549193.5:ENST00000681324.1:ENST00000550995.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.21741	4.77254	5.32767	0.00496616	5.95442e-6	0.0964485	3.4453e-4
chr4	18006346	18006446	2849403	0	-	0.41	(0.392,0.424]	chr4	269641	331	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1:ENST00000512376.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.21741	4.77254	5.32767	0.00496616	5.95442e-6	0.0964485	3.4453e-4
chr1	121290892	121290992	280967	0	+	0.37	(0.36,0.392]	chr1	28920	55	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.59992	4.7719249999999995	5.94393	0.00266188	1.58245e-8	0.0631592	1.55285e-6
chr13	40906161	40906261	7499366	0	-	0.56	(0.526,0.57]	chr13	690236	420	INTRON	INTRON	TPTE2P5	ENSG00000168852.13	ENST00000652519.1:ENST00000379515.3:ENST00000633547.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.63387	4.770944999999999	4.90802	2.57391e-4	4.81512e-5	0.00911512	0.00220626
chr3	111870171	111870271	1954193	0	+	0.54	(0.526,0.57]	chr3	196633	99	INTRON	INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000478922.1:ENST00000477695.5:ENST00000393925.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.63387	4.770944999999999	4.90802	2.57391e-4	4.81512e-5	0.00911512	0.00220626
chr15	31838519	31838619	8120451	0	-	0.54	(0.526,0.57]	chr15	751207	1487	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.69362	4.77078	4.84794	1.98837e-4	6.50622e-5	0.00746609	0.00284455
chr17	29268728	29268828	8902530	0	-	0.57	(0.526,0.57]	chr17	853230	8	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.69362	4.77078	4.84794	1.98837e-4	6.50622e-5	0.00746609	0.00284455
chr17	30843121	30843218	8692258	0	+	0.536082	(0.526,0.57]	chr17	822966	20	INTRON	INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	13	2	4.69362	4.77078	4.84794	1.98837e-4	6.50622e-5	0.00746609	0.00284455
chr2	48506768	48506868	1026600	0	+	0.56	(0.526,0.57]	chr2	110441	1	SS3_PROX	SS3_PROX:INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.69362	4.77078	4.84794	1.98837e-4	6.50622e-5	0.00746609	0.00284455
chr5	139587476	139587576	3334356	0	+	0.54	(0.526,0.57]	chr5	306100	247	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.69362	4.77078	4.84794	1.98837e-4	6.50622e-5	0.00746609	0.00284455
chr7	87874897	87874996	4769278	0	-	0.313131	[0,0.32]	chr7	427090	139	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	4.64799	4.77027	4.89255	2.00168e-6	2.15736e-7	1.30649e-4	1.70234e-5
chr1	66927225	66927322	194877	0	+	0.360825	(0.36,0.392]	chr1	20891	6	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.57244	4.76981	4.96718	1.24104e-4	2.92322e-6	0.0049353	1.80583e-4
chr15	59453661	59453761	7995191	0	+	0.38	(0.36,0.392]	chr15	739202	71	INTRON	INTRON	FAM81A	ENSG00000157470.12	ENST00000558348.5:ENST00000560394.5:ENST00000288228.10:ENST00000558513.1:ENST00000559628.5:ENST00000557914.5:ENST00000560474.5:ENST00000560087.5:ENST00000560074.5:ENST00000560123.5:ENST00000561361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	4.57244	4.76981	4.96718	1.24104e-4	2.92322e-6	0.0049353	1.80583e-4
chr7	7577865	7577964	4304135	0	+	0.383838	(0.36,0.392]	chr7	390179	33	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.57244	4.76981	4.96718	1.24104e-4	2.92322e-6	0.0049353	1.80583e-4
chr1	151414296	151414396	766121	0	-	0.38	(0.36,0.392]	chr1	83584	15	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.91092	4.769385	5.62785	5.00165e-4	5.69775e-7	0.0160179	4.16055e-5
chr5	82206247	82206347	3240060	0	+	0.38	(0.36,0.392]	chr5	299155	273	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000458350.7:ENST00000504770.5:ENST00000513634.1:ENST00000508814.5:ENST00000514253.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.91092	4.769385	5.62785	5.00165e-4	5.69775e-7	0.0160179	4.16055e-5
chr10	995428	995528	5773978	0	+	0.5	(0.49,0.526]	chr10	519943	1	SS3_PROX	SS3_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	3.85015	4.768655000000001	5.68716	9.88149e-7	3.37299e-8	6.99627e-5	3.12343e-6
chrX	77828158	77828255	10385186	0	-	0.525773	(0.49,0.526]	chrX	1030583	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAGT1	ENSG00000102158.22	ENST00000618282.5:ENST00000358075.11:ENST00000692161.1:ENST00000685015.1:ENST00000691993.1:ENST00000688650.1:ENST00000691172.1:ENST00000689519.1:ENST00000685353.1:ENST00000689137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.70699	4.768615	5.83024	6.7032e-6	4.05406e-9	3.89775e-4	4.37881e-7
chr7	158632017	158632117	4911199	0	-	0.38	(0.36,0.392]	chr7	438802	3	SS3_PROX	SS3_PROX:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	47	2	4.51772	4.7677700000000005	5.01782	1.31539e-12	1e-12	2.24156e-10	1.72912e-10
chr22	43969704	43969801	9956963	0	+	0.57732000000000006	(0.57,0.629]	chr22	990949	5	INTRON	INTRON	SAMM50	ENSG00000100347.15	ENST00000350028.5:ENST00000493161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.91804	4.767235	5.61643	2.83782e-5	4.34385e-8	0.0013972	3.91431e-6
chrX	68655918	68656018	10148861	0	+	0.47	(0.459,0.49]	chrX	1011654	4	SS3_PROX	SS3_PROX:INTRON	STARD8	ENSG00000130052.14	ENST00000374599.8:ENST00000488088.1:ENST00000523864.5:ENST00000252336.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	4.13232	4.766505	5.40069	1.41387e-5	1.15324e-6	7.54814e-4	7.95154e-5
chr15	64519153	64519253	8005123	0	+	0.35	(0.32,0.36]	chr15	740244	162	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	4.49493	4.76621	5.03749	9.65678e-5	1.01106e-5	0.00399919	5.51435e-4
chr16	69597225	69597325	8422400	0	+	0.37	(0.36,0.392]	chr16	788942	283	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.83113	4.765935	5.70074	6.41601e-4	3.77982e-7	0.0193935	2.84782e-5
chr1	65422155	65422253	184247	0	+	0.357143	(0.32,0.36]	chr1	20348	3	INTRON	INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	4.02125	4.7657799999999995	5.51031	3.53532e-4	2.41138e-6	0.0122629	1.53938e-4
chr4	113689462	113689561	3000660	0	-	0.363636	(0.36,0.392]	chr4	280747	273	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.4918	4.765504999999999	5.03921	9.59768e-5	4.36875e-6	0.00399331	2.58808e-4
chr10	828695	828789	6036522	0	-	0.468085	(0.459,0.49]	chr10	541738	16	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	4.4153	4.76445	5.1136	8.98032e-7	9.08458e-11	6.37943e-5	1.22932e-8
chrX	24171316	24171416	10104595	0	+	0.47	(0.459,0.49]	chrX	1007440	91	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000480195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	4.4153	4.76445	5.1136	8.98032e-7	9.08458e-11	6.37943e-5	1.22932e-8
chr1	245984893	245984993	913301	0	-	0.47	(0.459,0.49]	chr1	100939	289	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	4.19471	4.764405	5.3341	4.50563e-8	1e-12	4.04764e-6	1.73382e-10
chr19	53432727	53432826	9383999	0	+	0.424242	(0.392,0.424]	chr19	915226	3	INTRON	INTRON	ZNF761:TPM3P9	ENSG00000160336.17:ENSG00000241015.2	ENST00000651864.1:ENST00000684525.1:ENST00000424846.3:ENST00000610928.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript	6	29	2	3.84554	4.763885	5.68223	1.931e-7	4.0409e-11	1.56398e-5	5.71066e-9
chr15	90189152	90189251	8078247	0	+	0.484848	(0.459,0.49]	chr15	746848	37	INTRON	INTRON	SEMA4B	ENSG00000185033.15	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.3608	4.7637599999999996	5.16672	7.74288e-6	2.23014e-6	4.39068e-4	1.43671e-4
chr8	61694333	61694433	5180151	0	-	0.45	(0.424,0.459]	chr8	464328	46	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	10	74	2	4.72008	4.763695	4.80731	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	56115143	56115242	8182736	0	-	0.474747	(0.459,0.49]	chr15	759035	111	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.04656	4.76358	5.4806	3.80472e-5	4.11395e-7	0.00181622	3.09732e-5
chr18	666820	666920	9037790	0	+	0.48	(0.459,0.49]	chr18	873857	41	INTRON	INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	4.04656	4.76358	5.4806	3.80472e-5	4.11395e-7	0.00181622	3.09732e-5
chr4	107616979	107617079	2985867	0	-	0.49	(0.459,0.49]	chr4	279709	22	INTRON	INTRON	PAPSS1	ENSG00000138801.9	ENST00000514815.1:ENST00000265174.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	4.04656	4.76358	5.4806	3.80472e-5	4.11395e-7	0.00181622	3.09732e-5
chr9	130604119	130604218	5514543	0	+	0.434343	(0.424,0.459]	chr9	494898	82	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000465949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.65351	4.76318	4.87285	1.8873e-7	2.03044e-8	1.54537e-5	1.97932e-6
chr11	78128175	78128267	6662349	0	-	0.391304	(0.36,0.392]	chr11	611001	9	EXON_MRNA	EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	4.26063	4.7614	5.26217	0.00451705	4.53146e-10	0.0875511	5.61917e-8
chr15	100622174	100622273	8101639	0	+	0.30303	[0,0.32]	chr15	749015	94	INTRON	INTRON	ASB7	ENSG00000183475.13	ENST00000332783.12:ENST00000558747.5:ENST00000343276.4	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	4.20226	4.761005	5.31975	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	36461033	36461133	990417	0	+	0.36	(0.32,0.36]	chr2	107826	179	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	4.52083	4.760735	5.00064	4.42887e-8	1.60554e-8	3.9809e-6	1.5647e-6
chr2	174626653	174626749	1619673	0	-	0.354167	(0.32,0.36]	chr2	167343	3	INTRON	INTRON	WIPF1	ENSG00000115935.18	ENST00000392547.6:ENST00000272746.9:ENST00000359761.7:ENST00000409415.7:ENST00000470752.5:ENST00000474332.5:ENST00000488830.6:ENST00000490887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	4.38184	4.760705	5.13957	6.71414e-5	1.66191e-5	0.00291649	8.55383e-4
chr4	173170959	173171059	2790499	0	+	0.29	[0,0.32]	chr4	264310	16	INTRON	INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.72543	4.760535	4.79564	5.01883e-4	1.35488e-6	0.0161742	9.17479e-5
chr3	48254524	48254623	1864147	0	+	0.353535	(0.32,0.36]	chr3	188955	65	INTRON	INTRON	ZNF589	ENSG00000164048.14	ENST00000427617.6:ENST00000412564.5:ENST00000354698.8:ENST00000440261.6:ENST00000448461.5:ENST00000457782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	66	2	4.26854	4.760515	5.25249	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	8839915	8840014	8313489	0	+	0.50505	(0.49,0.526]	chr16	774670	108	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	4.47833	4.7600549999999995	5.04178	1.57703e-5	3.41555e-7	8.20905e-4	2.60631e-5
chr11	83087399	83087496	6457491	0	+	0.268041	[0,0.32]	chr11	583582	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000658004.1:ENST00000527627.5:ENST00000533528.1:ENST00000658917.1:ENST00000669005.1:ENST00000665456.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.75039	4.759915	5.76944	0.00182075	2.56854e-7	0.0469284	2.02856e-5
chr3	197267609	197267709	2535008	0	-	0.31	[0,0.32]	chr3	243100	70	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.36243	4.759774999999999	6.15712	0.00121149	3.56277e-9	0.0321344	3.88104e-7
chr19	46602137	46602207	9365886	0	+	0.528571	(0.526,0.57]	chr19	911564	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALM3	ENSG00000160014.17	ENST00000391918.6:ENST00000597743.5:ENST00000477244.5:ENST00000291295.14:ENST00000598871.5:ENST00000595072.2:ENST00000602169.2:ENST00000594523.5:ENST00000597868.5:ENST00000599839.5:ENST00000596362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	4.67101	4.759475	4.84794	6.50622e-5	2.77771e-8	0.00284455	2.62893e-6
chrX	132430558	132430658	10434570	0	-	0.38	(0.36,0.392]	chrX	1034948	171	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370857.7:ENST00000370844.5:ENST00000370839.7:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	4.2231	4.75901	5.29492	1.51392e-5	5.04939e-9	7.85619e-4	5.39084e-7
chr1	96797908	96798007	240384	0	+	0.545455	(0.526,0.57]	chr1	24136	123	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.97495	4.758735	5.54252	3.21576e-5	1.66713e-7	0.00156852	1.36401e-5
chr3	125257926	125258026	2418226	0	-	0.3	[0,0.32]	chr3	231823	232	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.6742	4.75722	5.84024	0.00220802	1.72569e-7	0.053911	1.40017e-5
chr19	54205279	54205378	9385948	0	+	0.50505	(0.49,0.526]	chr19	915671	33	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.15714	4.75603	5.35492	0.00319561	1.0002e-6	0.0699484	7.00342e-5
chr21	45529584	45529682	9887624	0	-	0.510204	(0.49,0.526]	chr21	981053	33	INTRON	INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.15714	4.75603	5.35492	0.00319561	1.0002e-6	0.0699484	7.00342e-5
chrX	1420192	1420289	10249738	0	-	0.494845	(0.49,0.526]	chrX	1021433	7	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.15714	4.75603	5.35492	0.00319561	1.0002e-6	0.0699484	7.00342e-5
chr1	24761708	24761808	77178	0	+	0.43	(0.424,0.459]	chr1	7922	157	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr15	75374476	75374574	8238011	0	-	0.459184	(0.424,0.459]	chr15	765025	19	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000566640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr17	44435551	44435651	8942336	0	-	0.45	(0.424,0.459]	chr17	859965	4	SS3_PROX	SS3_PROX:INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr2	173935709	173935809	1615812	0	-	0.44	(0.424,0.459]	chr2	167006	9	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr2	233465257	233465352	1345020	0	+	0.431579	(0.424,0.459]	chr2	139108	6	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000409813.7:ENST00000430834.1:ENST00000495901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr4	26347567	26347666	2590026	0	+	0.434343	(0.424,0.459]	chr4	248535	24	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr5	132571200	132571299	3318154	0	+	0.434343	(0.424,0.459]	chr5	304335	115	INTRON	INTRON	RAD50	ENSG00000113522.14	ENST00000416135.5:ENST00000651541.1:ENST00000533482.5:ENST00000378823.8:ENST00000652016.1:ENST00000651160.1:ENST00000652485.1:ENST00000651723.1:ENST00000423956.5:ENST00000453394.5:ENST00000651658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.71424	4.755635	4.79703	3.07139e-4	2.28148e-4	0.0105767	0.00827964
chr18	79146050	79146149	9156705	0	+	0.646465	(0.629,1]	chr18	882393	18	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	4.0165	4.753735	5.49097	4.23477e-6	9.87659e-8	2.57151e-4	8.31085e-6
chrX	299433	299531	10067051	0	+	0.5	(0.49,0.526]	chrX	1004599	2	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	3.16657	4.75317	6.33977	4.17868e-5	1.64846e-12	0.00194135	2.75276e-10
chr1	31282980	31283080	559163	0	-	0.51	(0.49,0.526]	chr1	62190	6	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr12	55924788	55924888	7175341	0	-	0.5	(0.49,0.526]	chr12	661274	101	INTRON	INTRON	PYM1	ENSG00000170473.17	ENST00000408946.7:ENST00000398213.4:ENST00000302533.6:ENST00000557259.5:ENST00000547925.1:ENST00000549939.1:ENST00000454792.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr15	50753935	50754034	8166610	0	-	0.494949	(0.49,0.526]	chr15	757264	38	INTRON	INTRON	SPPL2A	ENSG00000138600.10	ENST00000261854.10:ENST00000558414.1:ENST00000560288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr19	38627502	38627602	9344465	0	+	0.5	(0.49,0.526]	chr19	907134	10	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr2	127712011	127712108	1561107	0	-	0.505155	(0.49,0.526]	chr2	162042	18	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr8	26652633	26652731	4955417	0	+	0.510204	(0.49,0.526]	chr8	443881	2	SS5_PROX	SS5_PROX:INTRON	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9:ENST00000523027.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.38975	4.752940000000001	5.11613	9.92102e-4	1.03252e-5	0.0276375	5.57702e-4
chr20	37508110	37508209	9741083	0	-	0.434343	(0.424,0.459]	chr20	964938	43	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	56	2	4.31883	4.75277	5.18671	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	44274796	44274896	591874	0	-	0.51	(0.49,0.526]	chr1	66580	180	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000452396.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.38916	4.752645	5.11613	1.03252e-5	6.34142e-7	5.57702e-4	4.61699e-5
chr1	146160683	146160782	751140	0	-	0.50505	(0.49,0.526]	chr1	81122	35	INTRON	INTRON	NBPF10:NOTCH2NLA	ENSG00000271425.9:ENSG00000264343.7	ENST00000612520.2:ENST00000579793.6:ENST00000362074.7:ENST00000687833.1:ENST00000688759.1:ENST00000689750.1:ENST00000692119.1:ENST00000686973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.4628	4.75229	5.04178	7.611e-4	1.57703e-5	0.0225125	8.20905e-4
chr10	96846016	96846115	5949928	0	+	0.494949	(0.49,0.526]	chr10	533652	118	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.4628	4.75229	5.04178	7.611e-4	1.57703e-5	0.0225125	8.20905e-4
chr3	48705043	48705142	2270972	0	-	0.50505	(0.49,0.526]	chr3	220332	49	INTRON	INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5:ENST00000413298.5:ENST00000450045.5:ENST00000446860.5:ENST00000455545.5:ENST00000412795.5:ENST00000417896.1:ENST00000443964.1:ENST00000436134.5:ENST00000440424.5:ENST00000434860.1:ENST00000424035.1:ENST00000476645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.4628	4.75229	5.04178	7.611e-4	1.57703e-5	0.0225125	8.20905e-4
chr5	79169948	79170048	3518422	0	-	0.47	(0.459,0.49]	chr5	321715	482	INTRON	INTRON	DMGDH	ENSG00000132837.15	ENST00000520388.5:ENST00000518707.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	14	2	3.81712	4.7505500000000005	5.68398	0.0120499	5.57196e-8	0.184357	4.89622e-6
chr5	66041178	66041278	3196674	0	+	0.38	(0.36,0.392]	chr5	294806	23	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.65848	4.749750000000001	4.84102	8.06613e-7	9.48006e-11	5.78931e-5	1.278e-8
chr5	1472972	1473068	3413790	0	-	0.583333	(0.57,0.629]	chr5	314177	17	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	4.66708	4.74971	4.83234	7.1397e-9	9.24905e-10	7.41358e-7	1.09461e-7
chr7	76571912	76572012	4437685	0	+	0.29	[0,0.32]	chr7	399292	200	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	20	2	4.13528	4.7492350000000005	5.36319	1.13263e-5	2.64348e-9	6.25152e-4	2.94646e-7
chr2	46756618	46756718	1019025	0	+	0.26	[0,0.32]	chr2	109833	568	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	4.19171	4.74684	5.30197	1.59164e-6	8.33093e-10	1.07558e-4	9.89956e-8
chr5	36228364	36228464	3440868	0	-	0.34	(0.32,0.36]	chr5	316401	4	INTRON	INTRON	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000282512.7:ENST00000506945.5:ENST00000514504.5:ENST00000511088.1	protein_coding	protein_coding	protein_coding	protein_coding	11	61	2	4.48002	4.746785	5.01355	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	66436953	66437052	4995806	0	+	0.535354	(0.526,0.57]	chr8	448128	37	INTRON	INTRON	ADHFE1	ENSG00000147576.17	ENST00000415254.5:ENST00000424777.6:ENST00000276576.11:ENST00000396621.7:ENST00000426810.5:ENST00000396623.8:ENST00000496501.5:ENST00000422166.5:ENST00000449512.5:ENST00000431959.5:ENST00000466920.5:ENST00000443372.5:ENST00000463261.5:ENST00000419955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	92	2	4.37895	4.74454	5.11013	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	689578	689668	6036288	0	-	0.788889	(0.629,1]	chr10	541700	1	UTR5	UTR5:EXON_MRNA	DIP2C	ENSG00000151240.17	ENST00000280886.12:ENST00000634311.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.91228	4.74441	5.57654	1.12818e-5	3.61535e-8	6.02727e-4	3.34936e-6
chrX	130831442	130831542	10432521	0	-	0.46	(0.459,0.49]	chrX	1034776	218	INTRON	INTRON	ENOX2	ENSG00000165675.19	ENST00000338144.8:ENST00000394363.6:ENST00000370935.5:ENST00000686943.1:ENST00000432489.5:ENST00000492263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.56515	4.742905	5.92066	8.21277e-4	2.70029e-9	0.0238805	2.98805e-7
chr18	36041365	36041464	9212181	0	-	0.414141	(0.392,0.424]	chr18	887258	1	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	2	17	2	3.90178	4.74246	5.58314	7.45573e-6	7.33041e-7	4.27499e-4	5.19799e-5
chr1	93341206	93341304	695670	0	-	0.367347	(0.36,0.392]	chr1	75364	3	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000451302.6:ENST00000668257.1:ENST00000661111.1:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000670231.1:ENST00000411670.5:ENST00000452347.6:ENST00000653362.1:ENST00000655606.1:ENST00000445076.2:ENST00000457387.2:ENST00000438777.5:ENST00000449305.5	lncRNA	lncRNA	lncRNA	lncRNA	13	66	2	4.12364	4.742165	5.36069	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	203533727	203533825	1675964	0	-	0.540816	(0.526,0.57]	chr2	172350	4	INTRON	INTRON	RAPH1	ENSG00000173166.18	ENST00000457812.5:ENST00000319170.10:ENST00000630330.2:ENST00000308091.8:ENST00000453034.5:ENST00000420371.2:ENST00000465669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.13626	4.74183	5.3474	0.00339748	1.05485e-6	0.0728314	7.33447e-5
chr6	75642494	75642593	3818849	0	+	0.454545	(0.424,0.459]	chr6	349882	14	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.11093	4.7412399999999995	5.37155	5.36389e-5	2.42251e-6	0.00243585	1.53938e-4
chr7	22950128	22950227	4655476	0	-	0.444444	(0.424,0.459]	chr7	418321	25	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000680721.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000498833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	4.11093	4.7412399999999995	5.37155	5.36389e-5	2.42251e-6	0.00243585	1.53938e-4
chr3	119979299	119979397	2401455	0	-	0.44898	(0.424,0.459]	chr3	230139	24	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000678787.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677128.1:ENST00000678608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	3.57634	4.7411449999999995	5.90595	3.8234e-6	1.00338e-8	2.3279e-4	1.01215e-6
chr11	1749526	1749626	6535985	0	-	0.71	(0.629,1]	chr11	593514	4	SS3_PROX	SS3_PROX:INTRON	IFITM10	ENSG00000244242.2	ENST00000340134.5:ENST00000382123.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.33899	4.741085	5.14318	8.51164e-4	3.40591e-6	0.0245129	2.08838e-4
chr11	8701973	8702071	6551547	0	-	0.663265	(0.629,1]	chr11	595644	16	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000534278.5:ENST00000530438.5:ENST00000526062.5:ENST00000532871.3:ENST00000533081.5:ENST00000526701.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.39444	4.7405100000000004	5.08658	6.41849e-4	5.52146e-6	0.0196462	3.23814e-4
chr19	14151247	14151339	9445941	0	-	0.695652	(0.629,1]	chr19	927703	4	CDS	CDS:EXON_MRNA	ADGRL1	ENSG00000072071.17	ENST00000340736.10:ENST00000361434.8:ENST00000593005.5:ENST00000592164.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.39444	4.7405100000000004	5.08658	6.41849e-4	5.52146e-6	0.0196462	3.23814e-4
chr5	141532654	141532752	3624493	0	-	0.367347	(0.36,0.392]	chr5	329151	26	INTRON	INTRON	DIAPH1	ENSG00000131504.18	ENST00000647433.1:ENST00000389054.8:ENST00000518047.5:ENST00000491754.5:ENST00000494967.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	3.20352	4.73997	6.27642	0.0019364	2.38946e-10	0.0476694	3.06702e-8
chr2	187510232	187510332	1646092	0	-	0.41	(0.392,0.424]	chr2	169064	61	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	40	2	3.96451	4.73901	5.51351	1.34703e-12	1.32427e-12	2.28243e-10	2.25469e-10
chr17	17962471	17962571	8887968	0	-	0.54	(0.526,0.57]	chr17	850684	546	INTRON	INTRON	TOM1L2	ENSG00000175662.18	ENST00000581396.5:ENST00000379504.8:ENST00000318094.14:ENST00000395739.8:ENST00000535933.5:ENST00000540946.5:ENST00000542206.5:ENST00000537091.2:ENST00000579586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.38241	4.73853	5.09465	0.00101891	1.16684e-5	0.0276375	6.16746e-4
chr5	59056603	59056703	3472792	0	-	0.53	(0.526,0.57]	chr5	319172	172	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.38241	4.73853	5.09465	0.00101891	1.16684e-5	0.0276375	6.16746e-4
chr7	75359809	75359909	4433354	0	+	0.55	(0.526,0.57]	chr7	398678	4	SS5_PROX	SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.38241	4.73853	5.09465	0.00101891	1.16684e-5	0.0276375	6.16746e-4
chr3	195130790	195130890	2523903	0	-	0.53	(0.526,0.57]	chr3	241746	87	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.44169	4.7379999999999995	5.03431	8.21639e-4	1.64566e-5	0.0238903	8.48927e-4
chr7	70496630	70496730	4415694	0	+	0.56	(0.526,0.57]	chr7	397021	589	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.44169	4.7379999999999995	5.03431	8.21639e-4	1.64566e-5	0.0238903	8.48927e-4
chrX	44893586	44893686	10117838	0	+	0.57	(0.526,0.57]	chrX	1008809	192	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.44169	4.7379999999999995	5.03431	8.21639e-4	1.64566e-5	0.0238903	8.48927e-4
chr4	169264720	169264820	3085646	0	-	0.48	(0.459,0.49]	chr4	285589	1077	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.85937	4.737265000000001	5.61516	1.54766e-4	9.49302e-8	0.00599593	8.06088e-6
chr12	792070	792170	6787031	0	+	0.44	(0.424,0.459]	chr12	619901	374	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.01593	4.735720000000001	5.45551	8.03177e-5	1.50668e-6	0.00342222	9.96778e-5
chr4	183142011	183142111	2802572	0	+	0.43	(0.424,0.459]	chr4	264975	420	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	4.01593	4.735720000000001	5.45551	8.03177e-5	1.50668e-6	0.00342222	9.96778e-5
chr17	44874152	44874250	8943836	0	-	0.428571	(0.424,0.459]	chr17	860169	11	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.20361	4.735585	5.26756	1.79381e-5	8.0232e-6	9.13813e-4	4.54299e-4
chr1	172600668	172600767	348294	0	+	0.414141	(0.392,0.424]	chr1	38526	1	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr12	123656128	123656226	7041910	0	+	0.418367	(0.392,0.424]	chr12	646019	1	SS5_PROX	SS5_PROX:INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr13	30625270	30625370	7342602	0	+	0.41	(0.392,0.424]	chr13	678746	30	INTRON	INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr16	11788527	11788626	8510328	0	-	0.414141	(0.392,0.424]	chr16	798616	56	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr16	28204093	28204193	8539890	0	-	0.41	(0.392,0.424]	chr16	802974	227	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr17	31326252	31326352	8696903	0	+	0.42	(0.392,0.424]	chr17	823501	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr19	52191802	52191902	9380430	0	+	0.41	(0.392,0.424]	chr19	914680	5	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000628959.1:ENST00000468280.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr2	33177455	33177555	985779	0	+	0.41	(0.392,0.424]	chr2	107468	421	INTRON	INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr2	69629177	69629277	1478753	0	-	0.4	(0.392,0.424]	chr2	152989	718	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr3	185593044	185593142	2128647	0	+	0.418367	(0.392,0.424]	chr3	209271	25	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000465201.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000439684.5:ENST00000458551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr9	91893592	91893692	5659026	0	-	0.41	(0.392,0.424]	chr9	506494	65	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chrX	129986849	129986949	10223656	0	+	0.4	(0.392,0.424]	chrX	1018147	37	INTRON	INTRON	BCORL1	ENSG00000085185.16	ENST00000607874.1:ENST00000488135.6:ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chrX	130207190	130207288	10429776	0	-	0.397959	(0.392,0.424]	chrX	1034598	14	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.54701	4.735015000000001	4.92302	0.00102713	1.45314e-4	0.0276375	0.00569484
chr10	110245918	110246018	5974932	0	+	0.26	[0,0.32]	chr10	536912	1	SS5_PROX	SS5_PROX:INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	3.94806	4.735005	5.52195	2.63638e-8	1.99332e-11	2.48802e-6	2.93023e-9
chr11	95775024	95775123	6711798	0	-	0.424242	(0.392,0.424]	chr11	613217	30	INTRON	INTRON	FAM76B	ENSG00000077458.13	ENST00000358780.10:ENST00000398187.6:ENST00000543641.5:ENST00000536839.1:ENST00000545813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr11	95898161	95898261	6712765	0	-	0.4	(0.392,0.424]	chr11	613384	95	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr11	119007755	119007854	6509945	0	+	0.40404	(0.392,0.424]	chr11	589328	56	INTRON	INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr15	65590012	65590111	8218435	0	-	0.40404	(0.392,0.424]	chr15	762485	32	INTRON	INTRON	INTS14	ENSG00000138614.16	ENST00000573314.5:ENST00000313182.7:ENST00000652388.1:ENST00000567744.5:ENST00000431261.6:ENST00000569491.5:ENST00000420799.7:ENST00000442903.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr16	81450532	81450632	8450022	0	+	0.42	(0.392,0.424]	chr16	791027	46	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr17	30394910	30395010	8689738	0	+	0.42	(0.392,0.424]	chr17	822638	93	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr17	57533519	57533619	8751240	0	+	0.42	(0.392,0.424]	chr17	833052	34	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr22	28324935	28325035	10004552	0	-	0.4	(0.392,0.424]	chr22	996538	179	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr4	173199129	173199229	2790781	0	+	0.42	(0.392,0.424]	chr4	264310	298	INTRON	INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr5	149535303	149535403	3636458	0	-	0.41	(0.392,0.424]	chr5	330396	34	INTRON	INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr5	179628067	179628167	3679482	0	-	0.42	(0.392,0.424]	chr5	334965	35	INTRON	INTRON	HNRNPH1	ENSG00000169045.17	ENST00000521116.5:ENST00000522256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr6	37850200	37850300	3770888	0	+	0.4	(0.392,0.424]	chr6	345064	298	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr8	116692009	116692108	5254921	0	-	0.393939	(0.392,0.424]	chr8	469582	25	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr9	37341583	37341683	5381159	0	+	0.4	(0.392,0.424]	chr9	480728	134	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chrX	38082674	38082774	10112500	0	+	0.41	(0.392,0.424]	chrX	1008105	56	INTRON	INTRON	SYTL5	ENSG00000147041.12	ENST00000297875.7:ENST00000456733.2	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.61293	4.734735000000001	4.85654	8.49057e-4	1.84333e-4	0.0240064	0.00688171
chr1	6866465	6866564	12709	0	+	0.323232	(0.32,0.36]	chr1	1869	129	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000472283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr10	32315826	32315926	6102502	0	-	0.33	(0.32,0.36]	chr10	547013	95	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr11	33334070	33334169	6367964	0	+	0.333333	(0.32,0.36]	chr11	570388	51	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000534262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr11	66125662	66125762	6418734	0	+	0.34	(0.32,0.36]	chr11	578057	42	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5:ENST00000527380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr11	94844421	94844521	6470230	0	+	0.35	(0.32,0.36]	chr11	584805	125	INTRON	INTRON	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr12	57366066	57366166	7181579	0	-	0.34	(0.32,0.36]	chr12	663018	247	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr12	69786405	69786504	6949563	0	+	0.333333	(0.32,0.36]	chr12	636400	12	INTRON	INTRON	RAB3IP	ENSG00000127328.22	ENST00000247833.12:ENST00000417413.7:ENST00000483530.6:ENST00000378815.10:ENST00000550536.5:ENST00000362025.9:ENST00000378809.8:ENST00000552199.5:ENST00000547591.5:ENST00000550647.5:ENST00000551641.5:ENST00000553099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr13	44984146	44984245	7514779	0	-	0.353535	(0.32,0.36]	chr13	691011	16	INTRON	INTRON	NUFIP1	ENSG00000083635.8	ENST00000379161.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr13	45156924	45157024	7369948	0	+	0.34	(0.32,0.36]	chr13	681132	47	INTRON	INTRON	GTF2F2	ENSG00000188342.12	ENST00000340473.8	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr14	44967565	44967665	7612441	0	+	0.35	(0.32,0.36]	chr14	700249	27	INTRON	INTRON	TOGARAM1	ENSG00000198718.13	ENST00000361462.7:ENST00000361577.7:ENST00000557423.5:ENST00000555607.1:ENST00000555945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr14	60914732	60914832	7641434	0	+	0.34	(0.32,0.36]	chr14	703367	345	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr15	80082315	80082415	8051236	0	+	0.33	(0.32,0.36]	chr15	744185	66	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr17	19823497	19823596	8892885	0	-	0.323232	(0.32,0.36]	chr17	851536	62	INTRON	INTRON	ULK2	ENSG00000083290.20	ENST00000361658.6:ENST00000395544.9:ENST00000580130.5:ENST00000571177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr2	134128185	134128285	1147774	0	+	0.33	(0.32,0.36]	chr2	122854	75	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr3	60099238	60099338	2302273	0	-	0.33	(0.32,0.36]	chr3	225034	185	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr3	150547428	150547526	2042334	0	+	0.346939	(0.32,0.36]	chr3	204164	2	INTRON	INTRON	EIF2A	ENSG00000144895.12	ENST00000463863.5:ENST00000487799.5:ENST00000473499.1:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr5	55992786	55992886	3471243	0	-	0.34	(0.32,0.36]	chr5	318961	96	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000577363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr7	45751946	45752046	4712549	0	-	0.36	(0.32,0.36]	chr7	422492	3	SS3_PROX	SS3_PROX:INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1:ENST00000398921.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr7	69932481	69932581	4410040	0	+	0.35	(0.32,0.36]	chr7	396971	326	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2:ENST00000643587.1:ENST00000656998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr8	99734924	99735024	5046575	0	+	0.36	(0.32,0.36]	chr8	452423	135	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000682153.1:ENST00000682358.1:ENST00000518569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr8	125214081	125214181	5086227	0	+	0.36	(0.32,0.36]	chr8	455136	314	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chrX	96732758	96732858	10174459	0	+	0.34	(0.32,0.36]	chrX	1013675	472	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chrX	132028255	132028354	10225045	0	+	0.333333	(0.32,0.36]	chrX	1018345	42	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.32952	4.734545	5.13957	0.00388505	6.71414e-5	0.0816719	0.00291649
chr19	53366556	53366655	9383330	0	+	0.444444	(0.424,0.459]	chr19	915150	4	INTRON	INTRON	ZNF525	ENSG00000203326.12	ENST00000497729.5:ENST00000491101.5:ENST00000474037.6:ENST00000467003.1:ENST00000475179.5:ENST00000593918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.01346	4.734485	5.45551	0.00778514	1.50668e-6	0.130982	9.96778e-5
chr5	160096761	160096861	3653484	0	-	0.45	(0.424,0.459]	chr5	332446	23	INTRON	INTRON	PWWP2A	ENSG00000170234.13	ENST00000456329.7:ENST00000523662.1:ENST00000307063.9:ENST00000520662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.01346	4.734485	5.45551	0.00778514	1.50668e-6	0.130982	9.96778e-5
chr7	47457526	47457626	4714689	0	-	0.44	(0.424,0.459]	chr7	422716	44	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.01346	4.734485	5.45551	0.00778514	1.50668e-6	0.130982	9.96778e-5
chr9	133032259	133032358	5520516	0	+	0.444444	(0.424,0.459]	chr9	495769	7	INTRON	INTRON	GTF3C5	ENSG00000148308.18	ENST00000372099.10:ENST00000440319.5:ENST00000372097.10:ENST00000342018.12:ENST00000372108.9:ENST00000439697.1:ENST00000485692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.01346	4.734485	5.45551	0.00778514	1.50668e-6	0.130982	9.96778e-5
chr7	7577667	7577766	4304133	0	+	0.464646	(0.459,0.49]	chr7	390179	31	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.85282	4.73399	5.61516	2.77093e-6	9.49302e-8	1.73137e-4	8.06088e-6
chr1	47968744	47968844	606705	0	-	0.36	(0.32,0.36]	chr1	68016	1668	INTRON	INTRON	TRABD2B	ENSG00000269113.4	ENST00000606738.3:ENST00000435576.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr11	7997209	7997308	6311512	0	+	0.343434	(0.32,0.36]	chr11	566357	13	UTR3	UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000678132.1:ENST00000677179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr11	87119171	87119271	6463338	0	+	0.34	(0.32,0.36]	chr11	584113	274	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr13	29815535	29815635	7476371	0	-	0.34	(0.32,0.36]	chr13	688830	379	INTRON	INTRON	UBL3	ENSG00000122042.10	ENST00000380680.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr13	39043689	39043789	7362213	0	+	0.36	(0.32,0.36]	chr13	680246	2	SS3_PROX	SS3_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8:ENST00000485407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr13	95132497	95132597	7550724	0	-	0.35	(0.32,0.36]	chr13	694366	161	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr14	39162540	39162640	7814420	0	-	0.35	(0.32,0.36]	chr14	719225	26	INTRON	INTRON	TRAPPC6B	ENSG00000182400.15	ENST00000469361.5:ENST00000347691.9:ENST00000330149.10:ENST00000557764.5:ENST00000555269.5:ENST00000554018.1:ENST00000556765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr15	76212327	76212427	8241193	0	-	0.36	(0.32,0.36]	chr15	765426	59	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr17	12068758	12068857	8652368	0	+	0.343434	(0.32,0.36]	chr17	818330	134	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr2	28190757	28190857	966913	0	+	0.34	(0.32,0.36]	chr2	105638	610	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr2	108837884	108837984	1116444	0	+	0.36	(0.32,0.36]	chr2	119762	214	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000456512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr2	174372326	174372426	1618161	0	-	0.36	(0.32,0.36]	chr2	167136	134	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8:ENST00000377973.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr20	41188098	41188198	9743462	0	-	0.35	(0.32,0.36]	chr20	965285	25	INTRON	INTRON	ZHX3	ENSG00000174306.22	ENST00000309060.7:ENST00000421422.1:ENST00000683867.1:ENST00000560364.5:ENST00000559234.5:ENST00000544979.6:ENST00000559436.2:ENST00000558993.1:ENST00000560361.5:ENST00000432768.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr3	120054786	120054886	2402219	0	-	0.36	(0.32,0.36]	chr3	230174	328	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr4	109149040	109149140	2991612	0	-	0.33	(0.32,0.36]	chr4	280109	985	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr7	29221982	29222082	4342374	0	+	0.35	(0.32,0.36]	chr7	392258	236	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr8	125335927	125336027	5087446	0	+	0.36	(0.32,0.36]	chr8	455136	1533	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr9	14158387	14158486	5575121	0	-	0.343434	(0.32,0.36]	chr9	500093	21	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000543693.5:ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000380924.1:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.42963	4.733560000000001	5.03749	0.00312289	9.65678e-5	0.0697855	0.00399919
chr2	218221233	218221332	1312038	0	+	0.444444	(0.424,0.459]	chr2	134877	33	INTRON	INTRON	ARPC2	ENSG00000163466.16	ENST00000420104.5:ENST00000489598.5:ENST00000491780.5:ENST00000420201.5:ENST00000315717.10:ENST00000478612.5:ENST00000480062.5:ENST00000414983.5:ENST00000295685.14:ENST00000465395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.09426	4.732905000000001	5.37155	0.00651192	2.42251e-6	0.116758	1.53938e-4
chr20	18519134	18519234	9605788	0	+	0.43	(0.424,0.459]	chr20	948488	30	INTRON	INTRON	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000450074.6:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.09426	4.732905000000001	5.37155	0.00651192	2.42251e-6	0.116758	1.53938e-4
chr9	34433631	34433731	5609312	0	-	0.45	(0.424,0.459]	chr9	502418	273	INTRON	INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8:ENST00000422409.5:ENST00000379078.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.09426	4.732905000000001	5.37155	0.00651192	2.42251e-6	0.116758	1.53938e-4
chr2	11584772	11584863	937056	0	+	0.659341	(0.629,1]	chr2	102868	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	GREB1:RN7SL674P	ENSG00000196208.14:ENSG00000239899.3	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9:ENST00000463397.3	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	5	91	2	4.43267	4.73278	5.03289	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34761912	34762011	9729993	0	-	0.40404	(0.392,0.424]	chr20	963249	26	INTRON	INTRON	NCOA6	ENSG00000198646.14	ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.60865	4.732595	4.85654	1.84333e-4	1.06475e-6	0.00688171	7.43219e-5
chr22	40192334	40192434	9947796	0	+	0.59	(0.57,0.629]	chr22	989414	138	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.21821	4.73246	5.24671	0.00185391	2.15311e-6	0.0459841	1.3963e-4
chr5	37416446	37416546	3152211	0	+	0.6	(0.57,0.629]	chr5	291390	195	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.21821	4.73246	5.24671	0.00185391	2.15311e-6	0.0459841	1.3963e-4
chrX	73826794	73826893	10373475	0	-	0.515152	(0.49,0.526]	chrX	1029941	63	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	15	119	2	3.64372	4.7321550000000006	5.82059	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59747251	59747351	3479724	0	-	0.4	(0.392,0.424]	chr5	319265	1609	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.78194	4.732085	5.68223	7.47402e-4	1.931e-7	0.0225125	1.56398e-5
chr2	62711694	62711794	1048647	0	+	0.4	(0.392,0.424]	chr2	111806	40	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	4.60739	4.731965	4.85654	1.84333e-4	1.61917e-9	0.00688171	1.86282e-7
chr3	75537268	75537354	1922749	0	+	0.488372	(0.459,0.49]	chr3	194527	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC02018	ENSG00000272690.6	ENST00000652894.1:ENST00000654726.1	lncRNA	lncRNA	lncRNA	lncRNA	1	18	2	3.77994	4.73196	5.68398	2.14818e-4	5.57196e-8	0.00789628	4.89622e-6
chr7	77718027	77718127	4441992	0	+	0.43	(0.424,0.459]	chr7	399653	203	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.64041	4.73093	5.82145	0.00115507	1.92567e-8	0.0316008	1.85307e-6
chr17	28719984	28720005	8685330	0	+	0.428571	(0.424,0.459]	chr17	822039	1	UTR5	UTR5:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	97	626	2	4.47625	4.730415000000001	4.98458	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	24663524	24663624	76911	0	+	0.43	(0.424,0.459]	chr1	7893	3	SS5_PROX	SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000461768.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr1	36164479	36164579	108361	0	+	0.45	(0.424,0.459]	chr1	12367	68	INTRON	INTRON	MAP7D1	ENSG00000116871.16	ENST00000429533.6:ENST00000316156.8:ENST00000474796.2:ENST00000527764.1:ENST00000373150.8:ENST00000373151.6:ENST00000530729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr15	49332478	49332577	7973678	0	+	0.454545	(0.424,0.459]	chr15	737599	7	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000558399.5:ENST00000559580.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr17	80287614	80287714	8812877	0	+	0.45	(0.424,0.459]	chr17	839947	4	SS3_PROX	SS3_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr2	165951605	165951704	1602882	0	-	0.444444	(0.424,0.459]	chr2	166115	15	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000476227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr2	169803495	169803594	1202850	0	+	0.434343	(0.424,0.459]	chr2	126095	21	INTRON	INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr20	34538983	34539083	9634042	0	+	0.43	(0.424,0.459]	chr20	950909	38	INTRON	INTRON	ITCH:DYNLRB1	ENSG00000078747.16:ENSG00000125971.17	ENST00000664852.1:ENST00000480759.1:ENST00000357156.7:ENST00000374846.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr4	67697993	67698091	2911157	0	-	0.459184	(0.424,0.459]	chr4	273959	9	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7:ENST00000506571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr6	133962781	133962880	3889482	0	+	0.454545	(0.424,0.459]	chr6	355430	90	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr9	116693475	116693575	5475984	0	+	0.43	(0.424,0.459]	chr9	489220	57	INTRON	INTRON	TRIM32	ENSG00000119401.11	ENST00000450136.2:ENST00000373983.2:ENST00000411410.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.40599	4.72869	5.05139	0.00154565	4.27641e-5	0.0389999	0.00199812
chr1	113120121	113120220	262769	0	+	0.424242	(0.392,0.424]	chr1	27196	2	INTRON	INTRON	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.7075	4.72861	5.74972	9.40427e-4	1.25981e-7	0.0266969	1.05791e-5
chr13	51588837	51588936	7385207	0	+	0.424242	(0.392,0.424]	chr13	682482	29	UTR3	UTR3:EXON_MRNA:INTRON	WDFY2	ENSG00000139668.9	ENST00000612477.1:ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.7075	4.72861	5.74972	9.40427e-4	1.25981e-7	0.0266969	1.05791e-5
chr17	14173522	14173621	8657282	0	+	0.414141	(0.392,0.424]	chr17	818653	132	INTRON	INTRON	COX10	ENSG00000006695.12	ENST00000664217.1:ENST00000670279.1:ENST00000261643.8:ENST00000580561.1:ENST00000581931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.7075	4.72861	5.74972	9.40427e-4	1.25981e-7	0.0266969	1.05791e-5
chr12	48654518	48654596	7157833	0	-	0.397436	(0.392,0.424]	chr12	657586	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000549463.5:ENST00000548701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	4.12889	4.72828	5.32767	5.95442e-6	1.01794e-6	3.4453e-4	7.14423e-5
chr14	68533211	68533311	7675768	0	+	0.4	(0.392,0.424]	chr14	705813	355	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.53319	4.728105	4.92302	1.45314e-4	1.61757e-6	0.00569484	1.08646e-4
chr1	39851054	39851152	577678	0	-	0.438776	(0.424,0.459]	chr1	65379	4	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6:ENST00000469476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr10	89730533	89730632	5931433	0	+	0.454545	(0.424,0.459]	chr10	531858	9	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr12	119856030	119856129	7298208	0	-	0.434343	(0.424,0.459]	chr12	673223	54	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr12	128703792	128703891	7051970	0	+	0.454545	(0.424,0.459]	chr12	646526	60	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr15	98894981	98895079	8095487	0	+	0.438776	(0.424,0.459]	chr15	748526	30	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5:ENST00000557873.5:ENST00000558898.1:ENST00000560432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr4	174308388	174308488	2793724	0	+	0.45	(0.424,0.459]	chr4	264513	3	SS3_PROX	SS3_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000515299.5:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr5	134353417	134353517	3602393	0	-	0.43	(0.424,0.459]	chr5	327350	26	INTRON	INTRON	CDKL3	ENSG00000006837.12	ENST00000520693.5:ENST00000519312.5:ENST00000265334.9:ENST00000523054.5:ENST00000521118.5:ENST00000521755.1:ENST00000523832.1:ENST00000522501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr6	31137781	31137858	3753830	0	+	0.441558	(0.424,0.459]	chr6	341201	1	SS5_PROX	SS5_PROX:INTRON	PSORS1C1	ENSG00000204540.11	ENST00000259881.10:ENST00000479581.5:ENST00000550838.1:ENST00000552747.1:ENST00000547221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.48802	4.7280549999999995	4.96809	0.00121831	6.10851e-5	0.0326347	0.0027377
chr19	1592147	1592228	9402921	0	-	0.716049	(0.629,1]	chr19	918975	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MBD3	ENSG00000071655.18	ENST00000434436.8:ENST00000156825.5:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	4.09604	4.726675	5.35731	1.74665e-9	1e-12	2.00018e-7	1.73382e-10
chr11	65423172	65423272	6415872	0	+	0.61	(0.57,0.629]	chr11	577189	5	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	308	3130	2	4.68536	4.726475000000001	4.76759	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	178131776	178131876	3404123	0	+	0.44	(0.424,0.459]	chr5	312569	4	SS5_PROX	SS5_PROX:INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000502814.5:ENST00000512663.5:ENST00000507457.5:ENST00000508647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	4.35909	4.725585000000001	5.09208	1.2237e-8	8.32489e-10	1.23286e-6	9.89956e-8
chrX	141176383	141176481	10457066	0	-	0.561224	(0.526,0.57]	chrX	1035933	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDOC1	ENSG00000182195.9	ENST00000670989.1:ENST00000370526.5:ENST00000460721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	4.66178	4.72476	4.78774	3.64708e-9	1e-12	3.98105e-7	1.72912e-10
chr11	75342302	75342402	6653090	0	-	0.58	(0.57,0.629]	chr11	610002	303	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	4.13538	4.72409	5.3128	5.27543e-6	9.9438e-7	3.12112e-4	7.00342e-5
chr16	30721798	30721887	8370318	0	+	0.438202	(0.424,0.459]	chr16	781544	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	4.35302	4.72358	5.09414	2.54851e-8	4.02077e-10	2.42771e-6	4.98364e-8
chr13	95122199	95122299	7550621	0	-	0.41	(0.392,0.424]	chr13	694366	58	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	41	2	4.27208	4.7233350000000005	5.17459	1.26735e-11	1e-12	1.93647e-9	1.73382e-10
chr12	118356419	118356519	7296274	0	-	0.5	(0.49,0.526]	chr12	672987	589	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.72059	4.72293	5.72527	2.73826e-4	1.60521e-8	0.00975361	1.5647e-6
chr18	21250092	21250192	9071287	0	+	0.58	(0.57,0.629]	chr18	876596	73	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	108	2	4.14945	4.721909999999999	5.29437	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	47468036	47468136	4981904	0	+	0.38	(0.36,0.392]	chr8	447053	271	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	106	2	4.45862	4.72114	4.98366	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	52083941	52084041	145271	0	+	0.47	(0.459,0.49]	chr1	17802	4	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.20634	4.720685	5.23503	0.00276656	5.25256e-6	0.0641652	3.11102e-4
chr12	105180933	105181032	7268321	0	-	0.464646	(0.459,0.49]	chr12	669513	33	INTRON	INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000553109.1:ENST00000548425.1:ENST00000547809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.20634	4.720685	5.23503	0.00276656	5.25256e-6	0.0641652	3.11102e-4
chr15	73632201	73632301	8235052	0	-	0.49	(0.459,0.49]	chr15	764371	2	SS5_PROX	SS5_PROX:INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1:ENST00000563753.1:ENST00000567198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.20634	4.720685	5.23503	0.00276656	5.25256e-6	0.0641652	3.11102e-4
chr5	127958413	127958513	3585630	0	-	0.47	(0.459,0.49]	chr5	325633	11	INTRON	INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	4.20634	4.720685	5.23503	0.00276656	5.25256e-6	0.0641652	3.11102e-4
chr7	129894642	129894742	4843543	0	-	0.48	(0.459,0.49]	chr7	433940	133	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.20634	4.720685	5.23503	0.00276656	5.25256e-6	0.0641652	3.11102e-4
chr6	85570059	85570158	4119604	0	-	0.282828	[0,0.32]	chr6	375443	17	INTRON	INTRON	SNX14	ENSG00000135317.14	ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	4.39782	4.720065	5.04231	0.00334699	3.40623e-8	0.0734189	3.14246e-6
chr1	180712594	180712694	369789	0	+	0.46	(0.459,0.49]	chr1	39997	298	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr1	212875606	212875706	426743	0	+	0.48	(0.459,0.49]	chr1	46033	24	INTRON	INTRON	FLVCR1	ENSG00000162769.13	ENST00000366971.9:ENST00000419102.1:ENST00000474693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr10	28545155	28545255	5824576	0	+	0.47	(0.459,0.49]	chr10	523623	67	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr3	52614550	52614650	2284566	0	-	0.46	(0.459,0.49]	chr3	223102	42	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000446103.5:ENST00000480064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr6	163499990	163500090	3974944	0	+	0.46	(0.459,0.49]	chr6	360500	207	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr7	40148068	40148168	4374518	0	+	0.46	(0.459,0.49]	chr7	394228	58	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3:ENST00000444074.3:ENST00000416370.2:ENST00000413931.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chrX	109677100	109677196	10405987	0	-	0.489583	(0.459,0.49]	chrX	1032615	23	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.27284	4.71978	5.16672	0.00227779	7.74288e-6	0.0552099	4.39068e-4
chr19	50488586	50488686	9378939	0	+	0.6	(0.57,0.629]	chr19	914400	60	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	4.25559	4.7197499999999994	5.18391	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	64822910	64823010	8214556	0	-	0.47	(0.459,0.49]	chr15	761802	3	SS3_PROX	SS3_PROX:INTRON	PIF1	ENSG00000140451.13	ENST00000268043.8:ENST00000333425.10:ENST00000559239.2:ENST00000560444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	4.46843	4.71575	4.96307	3.8999e-10	1e-12	4.85399e-8	1.72912e-10
chr3	88148119	88148218	2365043	0	-	0.373737	(0.36,0.392]	chr3	227364	67	INTRON	INTRON	CGGBP1	ENSG00000163320.12	ENST00000462901.5:ENST00000467332.1	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	4.41364	4.7156649999999996	5.01769	2.01138e-10	1e-12	2.60682e-8	1.72912e-10
chr1	47343308	47343408	141543	0	+	0.6	(0.57,0.629]	chr1	17399	88	INTRON	INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.68132	4.714825	4.74833	1.50304e-4	1.07277e-4	0.00577248	0.00442346
chr13	97238631	97238731	7422159	0	+	0.56	(0.526,0.57]	chr13	683837	157	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	68	2	4.05928	4.714205	5.36913	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	28522257	28522357	89822	0	+	0.51	(0.49,0.526]	chr1	9776	29	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000486790.2:ENST00000430407.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.22088	4.713855000000001	5.20683	5.07325e-6	3.9703e-6	3.03611e-4	2.39291e-4
chr1	114757473	114757558	733018	0	-	0.682353	(0.629,1]	chr1	78680	2	SS5_PROX	SS5_PROX:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.68563	4.71366	4.74169	1.13329e-4	7.88558e-5	0.00463413	0.00339056
chr2	241765309	241765409	1366062	0	+	0.66	(0.629,1]	chr2	141380	89	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.68563	4.71366	4.74169	1.13329e-4	7.88558e-5	0.00463413	0.00339056
chr12	95272168	95272267	6992792	0	+	0.252525	[0,0.32]	chr12	638606	16	INTRON	INTRON	VEZT	ENSG00000028203.19	ENST00000547611.5:ENST00000547997.5:ENST00000546557.5:ENST00000548838.5:ENST00000436874.6:ENST00000546398.5:ENST00000552660.5:ENST00000551994.5:ENST00000549192.5:ENST00000548371.5:ENST00000550106.5:ENST00000551695.5:ENST00000397792.8:ENST00000356859.8:ENST00000552827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	4.31876	4.712955	5.10715	7.53496e-5	5.15904e-5	0.00322158	0.00235512
chr13	51399057	51399156	7528527	0	-	0.313131	[0,0.32]	chr13	692491	32	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.31876	4.712955	5.10715	7.53496e-5	5.15904e-5	0.00322158	0.00235512
chr3	177115182	177115282	2499177	0	-	0.32	[0,0.32]	chr3	239237	39	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	4.31876	4.712955	5.10715	7.53496e-5	5.15904e-5	0.00322158	0.00235512
chr5	108905536	108905636	3269339	0	+	0.37	(0.36,0.392]	chr5	301228	73	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	4.20207	4.712285	5.2225	2.06042e-5	1.31711e-8	0.00103061	1.30852e-6
chr12	71621107	71621204	7209940	0	-	0.329897	(0.32,0.36]	chr12	664959	4	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	4.57052	4.71073	4.85094	2.95142e-6	2.73185e-7	1.84947e-4	2.11622e-5
chr9	124602907	124603007	5732955	0	-	0.36	(0.32,0.36]	chr9	513813	72	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.57052	4.71073	4.85094	2.95142e-6	2.73185e-7	1.84947e-4	2.11622e-5
chr1	225547726	225547825	868801	0	-	0.444444	(0.424,0.459]	chr1	96778	118	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000497899.6:ENST00000391874.2:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.36966	4.710525	5.05139	4.27641e-5	3.96287e-6	0.00199812	2.39291e-4
chr3	136646070	136646170	2447674	0	-	0.44	(0.424,0.459]	chr3	234921	147	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	4.35302	4.71021	5.0674	2.54851e-8	1e-12	2.42771e-6	1.73382e-10
chr1	227022862	227022962	874218	0	-	0.32	[0,0.32]	chr1	97410	2	SS5_PROX	SS5_PROX:INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.98571	4.70964	5.43357	3.95466e-4	8.40147e-6	0.0132556	4.71048e-4
chr22	28329133	28329233	10004594	0	-	0.26	[0,0.32]	chr22	996538	221	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.98571	4.70964	5.43357	3.95466e-4	8.40147e-6	0.0132556	4.71048e-4
chr11	47220342	47220441	6393570	0	+	0.434343	(0.424,0.459]	chr11	572857	29	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000614825.4:ENST00000256996.9:ENST00000378601.7:ENST00000622090.4:ENST00000610805.4:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	4.52859	4.709585000000001	4.89058	8.77883e-9	3.27061e-12	9.05568e-7	5.32344e-10
chr12	50725386	50725481	6910487	0	+	0.305263	[0,0.32]	chr12	630040	1	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000546732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	4.24175	4.709474999999999	5.1772	6.90565e-5	5.87341e-5	0.00300464	0.00262682
chr2	224996596	224996696	1708617	0	-	0.35	(0.32,0.36]	chr2	175854	124	INTRON	INTRON	DOCK10	ENSG00000135905.20	ENST00000258390.12:ENST00000492369.5:ENST00000435582.1:ENST00000458608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	4.3783	4.707895000000001	5.03749	9.65678e-5	2.30074e-7	0.00399919	1.8106e-5
chr12	49403779	49403879	6903303	0	+	0.41	(0.392,0.424]	chr12	629135	163	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	4.25372	4.707135	5.16055	2.90267e-5	4.63789e-10	0.00141183	5.6824e-8
chr3	184938018	184938117	2125293	0	+	0.494949	(0.49,0.526]	chr3	209066	13	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	4.13201	4.706715	5.28142	8.48086e-6	2.46593e-6	4.76746e-4	1.54892e-4
chr5	618092	618191	3109049	0	+	0.575758	(0.57,0.629]	chr5	287973	53	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	4.62233	4.706379999999999	4.79043	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149924122	149924222	2041346	0	+	0.36	(0.32,0.36]	chr3	204111	25	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000361785.10:ENST00000482083.7:ENST00000468289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	4.68389	4.705195	4.7265	6.12159e-4	1.67087e-6	0.0189985	1.09706e-4
chr6	30284883	30284981	4032778	0	-	0.326531	(0.32,0.36]	chr6	365102	27	EXON_MRNA	EXON_MRNA:INTRON	HCG17:ENSG00000280128	ENSG00000270604.5:ENSG00000280128.1	ENST00000453558.1:ENST00000624252.1	TEC	TEC	TEC:lncRNA	TEC:lncRNA	1	12	2	4.68389	4.705195	4.7265	6.12159e-4	1.67087e-6	0.0189985	1.09706e-4
chr5	166382402	166382500	3380768	0	+	0.571429	(0.57,0.629]	chr5	310328	2	EXON_PSEUDO	EXON_PSEUDO	ENSG00000229119	ENSG00000229119.3	ENST00000518938.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	43	2	4.58375	4.7044	4.82505	6.49907e-10	4.81393e-12	7.87539e-8	7.70681e-10
chr9	122870713	122870813	5723678	0	-	0.36	(0.32,0.36]	chr9	513290	47	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.70951	4.70425	5.69899	0.00201951	3.81705e-7	0.0510613	2.90385e-5
chr11	63647063	63647162	6619013	0	-	0.414141	(0.392,0.424]	chr11	604500	1	INTRON	INTRON	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	10	64	2	4.65484	4.70418	4.75352	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	123511863	123511962	7314344	0	-	0.494949	(0.49,0.526]	chr12	675726	120	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	3.40263	4.70305	6.00347	4.0386e-6	4.64321e-10	2.43063e-4	5.72685e-8
chr3	51064521	51064596	1875458	0	+	0.6	(0.57,0.629]	chr3	190449	2	CDS	CDS:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.53486	4.70089	4.86692	3.95206e-4	4.28317e-5	0.0135724	0.0019752
chr17	16193961	16194061	8883381	0	-	0.34	(0.32,0.36]	chr17	850075	1	SS5_PROX	SS5_PROX:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	4.57052	4.699175	4.82783	4.57616e-4	2.95142e-6	0.0150584	1.84947e-4
chr20	31695873	31695973	9722638	0	-	0.35	(0.32,0.36]	chr20	962377	109	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	4.57052	4.699175	4.82783	4.57616e-4	2.95142e-6	0.0150584	1.84947e-4
chr20	44895035	44895135	9658697	0	+	0.38	(0.36,0.392]	chr20	954169	69	INTRON	INTRON	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000428262.1:ENST00000445830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	4.65848	4.69888	4.73928	8.06613e-7	5.12952e-7	5.78931e-5	3.78931e-5
chr1	150128078	150128177	292783	0	+	0.494949	(0.49,0.526]	chr1	30841	171	INTRON	INTRON	VPS45	ENSG00000136631.15	ENST00000643970.1:ENST00000535106.5:ENST00000369128.9:ENST00000611412.4:ENST00000644510.2:ENST00000491789.2:ENST00000642919.1:ENST00000644526.1:ENST00000477558.2:ENST00000618148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	4.35534	4.6985600000000005	5.04178	1.57703e-5	1.32027e-6	8.20905e-4	8.96115e-5
chr22	39319623	39319649	10039669	0	-	0.692308	(0.629,1]	chr22	1001040	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000465618.5:ENST00000484615.5:ENST00000459859.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	1	29	2	3.94001	4.698465000000001	5.45692	7.28993e-6	1.47634e-7	4.19849e-4	1.22032e-5
chr4	120734785	120734885	3006018	0	-	0.51	(0.49,0.526]	chr4	281302	26	INTRON	INTRON	PRDM5	ENSG00000138738.11	ENST00000264808.8:ENST00000515109.5:ENST00000428209.6:ENST00000505484.5:ENST00000506065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	3.9073	4.69826	5.48922	7.31994e-5	2.5213e-7	0.00316256	2.01203e-5
chr9	20975821	20975921	5362583	0	+	0.38	(0.36,0.392]	chr9	478591	1	SS3_PROX	SS3_PROX:INTRON	FOCAD	ENSG00000188352.13	ENST00000380249.5:ENST00000338382.11:ENST00000605086.5:ENST00000603631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	4.65673	4.698005	4.73928	7.48315e-4	5.12952e-7	0.0220209	3.78931e-5
chr16	56561381	56561480	8562822	0	-	0.545455	(0.526,0.57]	chr16	806161	414	INTRON	INTRON	BBS2	ENSG00000125124.14	ENST00000682930.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.04709	4.697245000000001	5.3474	2.21154e-5	1.05485e-6	0.00112425	7.33447e-5
chr17	1050934	1051034	8834308	0	-	0.56	(0.526,0.57]	chr17	843026	3	SS3_PROX	SS3_PROX:INTRON	ABR	ENSG00000159842.16	ENST00000574139.7:ENST00000302538.10:ENST00000544583.6:ENST00000574437.5:ENST00000291107.6:ENST00000536794.6:ENST00000575770.5:ENST00000576964.5:ENST00000574544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	4.04709	4.697245000000001	5.3474	2.21154e-5	1.05485e-6	0.00112425	7.33447e-5
chr5	75525535	75525634	3218406	0	+	0.383838	(0.36,0.392]	chr5	297298	122	INTRON	INTRON	POLK	ENSG00000122008.15	ENST00000241436.8:ENST00000503479.6:ENST00000506928.5:ENST00000510815.6:ENST00000505774.5:ENST00000514296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	4.58504	4.69646	4.80788	1.47653e-7	1.71644e-11	1.22253e-5	2.55236e-9
chr3	172211480	172211580	2079001	0	+	0.44	(0.424,0.459]	chr3	206085	243	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	3.36286	4.69617	6.02948	3.10239e-6	1.8912e-9	1.93959e-4	2.1436e-7
chr15	64074802	64074900	8211712	0	-	0.326531	(0.32,0.36]	chr15	761493	6	UTR3	UTR3:EXON_MRNA:INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	53	2	4.35902	4.69548	5.03194	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	362008	362108	3107814	0	+	0.44	(0.424,0.459]	chr5	287793	77	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10:ENST00000652417.2:ENST00000515206.6	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	4.29647	4.695305	5.09414	4.02077e-10	2.88117e-10	4.98364e-8	3.64151e-8
chr1	97800533	97800633	709368	0	-	0.38	(0.36,0.392]	chr1	75995	597	INTRON	INTRON	DPYD	ENSG00000188641.14	ENST00000370192.8:ENST00000306031.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.52068	4.69413	5.86758	0.00324516	5.98276e-8	0.0730386	5.2159e-6
chr2	74489126	74489226	1080189	0	+	0.39	(0.36,0.392]	chr2	115079	52	INTRON	INTRON	TTC31	ENSG00000115282.21	ENST00000489152.5:ENST00000233623.11:ENST00000424122.5:ENST00000410003.5:ENST00000442235.6:ENST00000449459.5:ENST00000464241.5:ENST00000491252.5:ENST00000459957.5:ENST00000463189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	3.52068	4.69413	5.86758	0.00324516	5.98276e-8	0.0730386	5.2159e-6
chr10	87169977	87170077	5925487	0	+	0.58	(0.57,0.629]	chr10	531100	1	SS3_PROX	SS3_PROX:INTRON	SHLD2	ENSG00000122376.12	ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.77045	4.69344	5.61643	9.07674e-5	4.34385e-8	0.00383949	3.91431e-6
chr17	16123224	16123322	8882655	0	-	0.377551	(0.36,0.392]	chr17	849991	7	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.65848	4.693345	4.72821	6.09158e-4	8.06613e-7	0.0188826	5.78931e-5
chr7	74879377	74879476	4732450	0	-	0.383838	(0.36,0.392]	chr7	424649	106	INTRON	INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	15	2	3.75844	4.6931449999999995	5.62785	6.393e-5	5.69775e-7	0.00282504	4.16055e-5
chr12	58899490	58899590	7184145	0	-	0.28	[0,0.32]	chr12	663683	83	INTRON	INTRON	LRIG3	ENSG00000139263.12	ENST00000379141.8:ENST00000320743.8:ENST00000433272.6:ENST00000552267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	4.42103	4.692825	4.96462	1.77666e-7	5.55329e-8	1.4379e-5	5.01996e-6
chr6	169753037	169753109	3980958	0	+	0.458333	(0.424,0.459]	chr6	360955	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ERMARD	ENSG00000130023.16	ENST00000366773.8:ENST00000366772.6:ENST00000590711.5:ENST00000592367.5:ENST00000392095.8:ENST00000592315.5:ENST00000592745.5:ENST00000418781.7:ENST00000586341.5:ENST00000592580.5:ENST00000588437.5:ENST00000588451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	4.01664	4.69274	5.36884	1.00233e-6	6.68643e-12	7.01342e-5	1.046e-9
chr12	11147049	11147149	7087809	0	-	0.24	[0,0.32]	chr12	651870	255	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	9	47	2	4.44535	4.692595000000001	4.93984	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	145034173	145034273	746502	0	-	0.39	(0.36,0.392]	chr1	79985	386	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr1	198180374	198180474	389821	0	+	0.38	(0.36,0.392]	chr1	41964	227	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr12	26972572	26972671	7127281	0	-	0.383838	(0.36,0.392]	chr12	654450	11	UTR3	UTR3:EXON_MRNA	TM7SF3	ENSG00000064115.11	ENST00000343028.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr12	92108864	92108964	7233980	0	-	0.39	(0.36,0.392]	chr12	666979	218	INTRON	INTRON	LINC01619	ENSG00000257242.9	ENST00000551843.5:ENST00000549802.5:ENST00000552106.5:ENST00000551563.6:ENST00000546975.4:ENST00000553207.5:ENST00000552277.3	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr15	58266919	58267019	8188761	0	-	0.38	(0.36,0.392]	chr15	759435	80	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000558231.5:ENST00000558239.5:ENST00000558073.5:ENST00000559297.5:ENST00000560122.5:ENST00000560863.5:ENST00000558504.1:ENST00000559579.1:ENST00000558946.1:ENST00000561098.1:ENST00000558603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr15	64092367	64092464	8211892	0	-	0.381443	(0.36,0.392]	chr15	761516	17	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr2	32310530	32310630	978730	0	+	0.38	(0.36,0.392]	chr2	106849	35	UTR3	UTR3:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr2	169623396	169623495	1201692	0	+	0.363636	(0.36,0.392]	chr2	125987	83	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000417938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr5	37650522	37650622	3154558	0	+	0.38	(0.36,0.392]	chr5	291423	449	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr7	112006930	112007030	4822214	0	-	0.39	(0.36,0.392]	chr7	432278	24	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr9	26869525	26869625	5591440	0	-	0.37	(0.36,0.392]	chr9	501131	2	SS5_PROX	SS5_PROX:INTRON	CAAP1	ENSG00000120159.13	ENST00000333916.8:ENST00000650615.1:ENST00000625311.1:ENST00000520187.1:ENST00000483493.6:ENST00000495958.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.65673	4.69247	4.72821	7.48315e-4	6.09158e-4	0.0220209	0.0188826
chr17	7219843	7219913	8639627	0	+	0.728571	(0.629,1]	chr17	816392	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000583312.5:ENST00000582356.5:ENST00000350303.9:ENST00000579286.5:ENST00000578269.5:ENST00000577857.5:ENST00000582056.5:ENST00000580263.5:ENST00000584103.5:ENST00000577191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.8359	4.691935	5.54797	1.86609e-5	5.19015e-8	9.4788e-4	4.6354e-6
chrX	108548286	108548386	10199030	0	+	0.27	[0,0.32]	chrX	1015702	81	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000470339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	4.34135	4.6918299999999995	5.04231	2.8746e-7	3.40623e-8	2.23534e-5	3.14246e-6
chr17	7696562	7696661	8641789	0	+	0.545455	(0.526,0.57]	chr17	817245	65	INTRON	INTRON	WRAP53	ENSG00000141499.17	ENST00000431639.6:ENST00000316024.9:ENST00000457584.6:ENST00000498311.5:ENST00000396463.7:ENST00000467699.5:ENST00000534050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	4.12302	4.691445	5.25987	8.93019e-6	2.82947e-6	4.98528e-4	1.75466e-4
chrX	110296263	110296363	10407599	0	-	0.35	(0.32,0.36]	chrX	1032722	313	INTRON	INTRON	AMMECR1	ENSG00000101935.12	ENST00000686065.1:ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1:ENST00000473662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.38184	4.6912400000000005	5.00064	1.66191e-5	4.42887e-8	8.55383e-4	3.9809e-6
chr2	47783584	47783681	1024952	0	+	0.659794	(0.629,1]	chr2	110218	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000493177.1:ENST00000540021.6:ENST00000455383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	4.4606	4.69111	4.92162	1.0897e-11	1.78546e-12	1.67854e-9	2.9769e-10
chr22	31713359	31713457	10016457	0	-	0.489796	(0.459,0.49]	chr22	998234	14	CDS	CDS:EXON_MRNA	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000431684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	4.04656	4.68937	5.33218	3.80472e-5	1.78412e-6	0.00181622	1.1709e-4
chr4	41995540	41995640	2614059	0	+	0.46	(0.459,0.49]	chr4	250353	44	INTRON	INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000510460.1:ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	4.04656	4.68937	5.33218	3.80472e-5	1.78412e-6	0.00181622	1.1709e-4
chr14	103521162	103521236	7918024	0	-	0.783784	(0.629,1]	chr14	730140	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.79995	4.688245	5.57654	2.99254e-5	3.61535e-8	0.00144698	3.34936e-6
chr11	10135872	10135972	6560854	0	-	0.37	(0.36,0.392]	chr11	596538	914	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.86419	4.68812	5.51205	1.86173e-5	2.39077e-6	9.46472e-4	1.5204e-4
chr2	85625791	85625891	1086349	0	+	0.46	(0.459,0.49]	chr2	115870	1	SS5_PROX	SS5_PROX:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000493829.5:ENST00000467885.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	4.53838	4.6878899999999994	4.8374	2.24187e-7	7.08953e-9	1.8079e-5	7.39732e-7
chr14	34449599	34449699	7801869	0	-	0.46	(0.459,0.49]	chr14	718161	139	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	4.61869	4.6877949999999995	4.7569	1.26997e-7	1.37759e-8	1.06312e-5	1.37123e-6
chr6	125988285	125988384	3872387	0	+	0.393939	(0.392,0.424]	chr6	354135	7	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	4.26419	4.6877200000000006	5.11125	3.31137e-5	2.06452e-7	0.00159224	1.64563e-5
chr22	28429690	28429790	10005600	0	-	0.34	(0.32,0.36]	chr22	996538	1227	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	4.2286	4.6874	5.1462	1.30322e-6	2.68825e-9	8.87161e-5	2.98355e-7
chr1	12572327	12572427	520540	0	-	0.46	(0.459,0.49]	chr1	56259	2	SS5_PROX	SS5_PROX:INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.53838	4.685544999999999	4.83271	1.09213e-4	2.24187e-7	0.00442392	1.8079e-5
chr12	11046619	11046719	7086801	0	-	0.32	[0,0.32]	chr12	651859	2	SS5_PROX	SS5_PROX:INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.36243	4.684895	6.00736	0.00121149	2.47801e-8	0.0321344	2.36756e-6
chr16	69600222	69600322	8422430	0	+	0.32	[0,0.32]	chr16	788942	313	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	4.19171	4.684455	5.1772	5.87341e-5	1.59164e-6	0.00262682	1.07558e-4
chr5	14711610	14711710	3422822	0	-	0.48	(0.459,0.49]	chr5	314856	3	SS3_PROX	SS3_PROX:INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000502585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.96686	4.683775	5.40069	5.54129e-5	1.15324e-6	0.00252909	7.95154e-5
chr7	108571943	108572003	4508204	0	+	0.333333	(0.32,0.36]	chr7	406426	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJB9	ENSG00000128590.5	ENST00000491582.1:ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	170	787	2	4.64408	4.68363	4.72318	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73833237	73833324	10373543	0	-	0.425287	(0.424,0.459]	chrX	1029963	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	16	107	2	4.44979	4.68338	4.91697	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	72886375	72886475	9005353	0	-	0.46	(0.459,0.49]	chr17	868491	362	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.81712	4.6832	5.54928	0.0120499	2.53394e-7	0.184357	1.97194e-5
chr5	180507383	180507483	3408109	0	+	0.49	(0.459,0.49]	chr5	313215	114	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000507016.1:ENST00000618123.4:ENST00000502447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.81712	4.6832	5.54928	0.0120499	2.53394e-7	0.184357	1.97194e-5
chr7	157374925	157375025	4599486	0	+	0.47	(0.459,0.49]	chr7	414174	28	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.81712	4.6832	5.54928	0.0120499	2.53394e-7	0.184357	1.97194e-5
chr1	19883333	19883432	67124	0	+	0.525253	(0.49,0.526]	chr1	6438	2	INTRON	INTRON	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.08493	4.683175	5.28142	0.00395081	2.46593e-6	0.0816719	1.54892e-4
chr15	75569920	75570020	8239947	0	-	0.51	(0.49,0.526]	chr15	765261	423	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.08493	4.683175	5.28142	0.00395081	2.46593e-6	0.0816719	1.54892e-4
chr19	18996661	18996758	9459553	0	-	0.505155	(0.49,0.526]	chr19	930458	10	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000593795.5:ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000597280.5:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.08493	4.683175	5.28142	0.00395081	2.46593e-6	0.0816719	1.54892e-4
chr6	1989655	1989755	3988467	0	-	0.52	(0.49,0.526]	chr6	361425	283	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.08493	4.683175	5.28142	0.00395081	2.46593e-6	0.0816719	1.54892e-4
chr3	65371944	65372044	2319805	0	-	0.39	(0.36,0.392]	chr3	225494	66	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.39898	4.68308	4.96718	1.24104e-4	8.56612e-8	0.0049353	7.38607e-6
chr14	45246242	45246342	7816851	0	-	0.4	(0.392,0.424]	chr14	719471	1	SS5_PROX	SS5_PROX:INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	4.03703	4.68235	5.32767	1.48653e-4	5.95442e-6	0.00578975	3.4453e-4
chr16	80767992	80768092	8607830	0	-	0.42	(0.392,0.424]	chr16	811546	330	INTRON	INTRON	CDYL2	ENSG00000166446.15	ENST00000570137.7:ENST00000562812.5:ENST00000563890.5:ENST00000566173.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.03703	4.68235	5.32767	1.48653e-4	5.95442e-6	0.00578975	3.4453e-4
chr1	43677927	43678026	128230	0	+	0.525253	(0.49,0.526]	chr1	15542	57	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.15714	4.681985	5.20683	0.00319561	3.9703e-6	0.0699484	2.39291e-4
chr17	1387835	1387935	8836584	0	-	0.52	(0.49,0.526]	chr17	843210	177	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.15714	4.681985	5.20683	0.00319561	3.9703e-6	0.0699484	2.39291e-4
chr19	10803859	10803955	9284309	0	+	0.510417	(0.49,0.526]	chr19	897023	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000587830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.15714	4.681985	5.20683	0.00319561	3.9703e-6	0.0699484	2.39291e-4
chr22	38236931	38237030	10034730	0	-	0.50505	(0.49,0.526]	chr22	1000203	52	INTRON	INTRON	TMEM184B	ENSG00000198792.13	ENST00000361906.8:ENST00000436674.5:ENST00000361684.8:ENST00000633438.1:ENST00000464059.5:ENST00000403210.2:ENST00000457534.5:ENST00000411679.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.15714	4.681985	5.20683	0.00319561	3.9703e-6	0.0699484	2.39291e-4
chr8	133573279	133573376	5094367	0	+	0.505155	(0.49,0.526]	chr8	455803	2	EXON_LNCRNA	EXON_LNCRNA	ST3GAL1-DT	ENSG00000261220.2	ENST00000561761.2	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.15714	4.681985	5.20683	0.00319561	3.9703e-6	0.0699484	2.39291e-4
chr15	65734414	65734514	8219458	0	-	0.55	(0.526,0.57]	chr15	762691	12	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.88187	4.681775	5.48168	8.23795e-5	2.6732e-7	0.00351856	2.09843e-5
chrX	16806678	16806778	10088585	0	+	0.46	(0.459,0.49]	chrX	1006410	197	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.88247	4.681535	5.4806	0.0104144	4.11395e-7	0.170122	3.09732e-5
chr15	28709688	28709787	8112907	0	-	0.525253	(0.49,0.526]	chr15	750740	1	SS3_PROX	SS3_PROX:INTRON	GOLGA8M	ENSG00000188626.7	ENST00000563027.2:ENST00000563213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	161	2	4.63495	4.6804950000000005	4.72604	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	177166597	177166696	2499695	0	-	0.494949	(0.49,0.526]	chr3	239259	22	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	100	2	3.82743	4.679835	5.53224	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	4250029	4250128	8850861	0	-	0.444444	(0.424,0.459]	chr17	845699	72	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	4.55675	4.6796500000000005	4.80255	1.17263e-9	1e-12	1.37264e-7	1.73382e-10
chr1	214483733	214483833	856329	0	-	0.29	[0,0.32]	chr1	95354	184	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000486173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	3.91531	4.67964	5.44397	7.60334e-8	3.97307e-11	6.5948e-6	5.63135e-9
chr4	146500753	146500853	3044858	0	-	0.42	(0.392,0.424]	chr4	283240	221	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5:ENST00000513583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	3.96221	4.6785	5.39479	1.96069e-4	4.26975e-6	0.00725539	2.57151e-4
chr19	23323976	23324076	9468932	0	-	0.54	(0.526,0.57]	chr19	931696	135	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	29	2	4.00947	4.678435	5.3474	1.05485e-6	1.44053e-9	7.33447e-5	1.67467e-7
chr12	58909183	58909283	7184242	0	-	0.41	(0.392,0.424]	chr12	663683	180	INTRON	INTRON	LRIG3	ENSG00000139263.12	ENST00000379141.8:ENST00000320743.8:ENST00000433272.6:ENST00000552267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.17862	4.67836	5.1781	4.01331e-5	2.48959e-5	0.00187621	0.00122627
chr1	15218326	15218425	53337	0	+	0.494949	(0.49,0.526]	chr1	4913	25	INTRON	INTRON	TMEM51	ENSG00000171729.14	ENST00000428417.5:ENST00000376014.7:ENST00000451326.6:ENST00000400796.7:ENST00000376008.3:ENST00000434578.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr1	61189423	61189523	166000	0	+	0.5	(0.49,0.526]	chr1	19206	565	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr1	155665073	155665172	777516	0	-	0.494949	(0.49,0.526]	chr1	85765	33	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr11	3790021	3790120	6542087	0	-	0.525253	(0.49,0.526]	chr11	594484	75	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr12	27642979	27643078	6854806	0	+	0.494949	(0.49,0.526]	chr12	626095	58	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5:ENST00000542187.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr17	35262192	35262291	8702142	0	+	0.515152	(0.49,0.526]	chr17	824412	7	INTRON	INTRON	SLFN5	ENSG00000166750.10	ENST00000542451.1:ENST00000299977.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr18	9506099	9506199	9057548	0	+	0.5	(0.49,0.526]	chr18	875326	263	INTRON	INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000585015.6:ENST00000383432.8:ENST00000609094.2:ENST00000458039.3:ENST00000577221.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr2	47584827	47584926	1023278	0	+	0.494949	(0.49,0.526]	chr2	110172	178	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000644092.1:ENST00000645339.1:ENST00000646415.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr2	108635240	108635340	1114675	0	+	0.5	(0.49,0.526]	chr2	119468	134	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5:ENST00000449684.6:ENST00000409441.5:ENST00000422797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr22	23749711	23749810	9996826	0	-	0.50505	(0.49,0.526]	chr22	995765	41	INTRON	INTRON	ZNF70	ENSG00000187792.5	ENST00000341976.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr5	43168429	43168529	3167607	0	+	0.51	(0.49,0.526]	chr5	292385	4	SS5_PROX	SS5_PROX:INTRON	ZNF131	ENSG00000172262.12	ENST00000682664.1:ENST00000510026.5:ENST00000509156.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000511736.5:ENST00000509931.5:ENST00000502623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr6	35911669	35911769	4047751	0	-	0.52	(0.49,0.526]	chr6	368953	63	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.64127	4.67808	4.71489	2.4929e-4	1.81396e-4	0.0089494	0.0069054
chr5	180278795	180278895	3682565	0	-	0.34	(0.32,0.36]	chr5	335372	90	INTRON	INTRON	MAPK9	ENSG00000050748.18	ENST00000452135.7:ENST00000343111.10:ENST00000455781.5:ENST00000393360.7:ENST00000347470.8:ENST00000397072.7:ENST00000393362.8:ENST00000425491.6:ENST00000539014.5:ENST00000523583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	4.06155	4.677365	5.29318	1.5251e-5	7.26161e-6	8.01855e-4	4.19717e-4
chr11	47225330	47225429	6393620	0	+	0.545455	(0.526,0.57]	chr11	572857	79	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000614825.4:ENST00000256996.9:ENST00000378601.7:ENST00000622090.4:ENST00000610805.4:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.80992	4.67622	5.54252	1.14789e-4	1.66713e-7	0.00467969	1.36401e-5
chr11	129243677	129243777	6778527	0	-	0.38	(0.36,0.392]	chr11	618740	515	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.38376	4.67547	4.96718	1.24104e-4	1.64803e-5	0.0049353	8.48507e-4
chr4	151315340	151315440	3058990	0	-	0.39	(0.36,0.392]	chr4	283919	492	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.38376	4.67547	4.96718	1.24104e-4	1.64803e-5	0.0049353	8.48507e-4
chr2	222597732	222597832	1702565	0	-	0.48	(0.459,0.49]	chr2	175146	254	INTRON	INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	4.4153	4.6753800000000005	4.93546	8.98032e-7	1.66582e-9	6.37943e-5	1.91035e-7
chr2	178441412	178441510	1629535	0	-	0.377551	(0.36,0.392]	chr2	168110	14	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRKRA	ENSG00000180228.14	ENST00000677859.1:ENST00000325748.9:ENST00000490501.5:ENST00000678775.1:ENST00000677689.1:ENST00000676922.1:ENST00000676832.1:ENST00000677584.1:ENST00000678053.1:ENST00000679037.1:ENST00000678845.1:ENST00000677981.1:ENST00000677206.1:ENST00000676505.1:ENST00000448279.2:ENST00000676586.1:ENST00000474793.6:ENST00000677136.1:ENST00000677386.1:ENST00000677460.1:ENST00000678167.1:ENST00000677253.1:ENST00000457633.2:ENST00000678058.1:ENST00000679202.1:ENST00000424699.5:ENST00000487082.5:ENST00000432031.6:ENST00000677806.1:ENST00000678813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.91092	4.67514	5.43936	5.00165e-4	3.42448e-6	0.0160179	2.10826e-4
chr22	37853320	37853417	9941633	0	+	0.43299	(0.424,0.459]	chr22	988498	14	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	57	2	4.29572	4.675135	5.05455	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	21222342	21222438	537828	0	-	0.458333	(0.424,0.459]	chr1	59120	1	INTRON	INTRON	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000374893.11:ENST00000649812.1:ENST00000357071.8:ENST00000436918.6:ENST00000264205.10	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	4.35302	4.674485	4.99595	2.54851e-8	1.88138e-9	2.42771e-6	2.13412e-7
chrM	13762	13857	10480513	0	+	0.505263	(0.49,0.526]	chrM	1039009	16	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	29	250	2	4.50108	4.67413	4.84718	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	29441473	29441573	5825757	0	+	0.47	(0.459,0.49]	chr10	523724	192	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000430295.5:ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000686070.1:ENST00000687838.1:ENST00000445521.6:ENST00000686207.1:ENST00000446807.5:ENST00000438202.5:ENST00000455774.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr13	75669406	75669506	7395691	0	+	0.46	(0.459,0.49]	chr13	683227	323	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000533305.5:ENST00000377499.9:ENST00000377534.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr14	103414915	103415013	7763161	0	+	0.479592	(0.459,0.49]	chr14	712880	28	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr15	78889999	78890097	8049692	0	+	0.489796	(0.459,0.49]	chr15	744089	23	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr17	16269459	16269559	8659928	0	+	0.48	(0.459,0.49]	chr17	818847	350	INTRON	INTRON	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr17	32026672	32026771	8698486	0	+	0.464646	(0.459,0.49]	chr17	823761	15	INTRON	INTRON	LRRC37B	ENSG00000185158.12	ENST00000543378.6:ENST00000327564.11:ENST00000584368.5:ENST00000578674.5:ENST00000583204.5:ENST00000394713.7:ENST00000341671.11:ENST00000581786.5:ENST00000580871.5:ENST00000582815.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr17	59028014	59028114	8971917	0	-	0.48	(0.459,0.49]	chr17	863992	2	SS5_PROX	SS5_PROX:INTRON	TRIM37	ENSG00000108395.14	ENST00000393066.7:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr18	80152467	80152567	9162485	0	+	0.48	(0.459,0.49]	chr18	882902	33	INTRON	INTRON	PARD6G-AS1	ENSG00000267270.7	ENST00000587254.5:ENST00000586421.1:ENST00000589574.1:ENST00000585422.1:ENST00000662611.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr19	45080927	45081027	9360488	0	+	0.47	(0.459,0.49]	chr19	910812	5	INTRON	INTRON	GEMIN7:MARK4	ENSG00000142252.11:ENSG00000007047.16	ENST00000591607.1:ENST00000591747.5:ENST00000270257.9:ENST00000592351.1:ENST00000391951.2:ENST00000587566.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr19	47163548	47163648	9368298	0	+	0.48	(0.459,0.49]	chr19	911766	60	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000594144.5:ENST00000413379.7:ENST00000600706.5:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr2	168650939	168651039	1198753	0	+	0.49	(0.459,0.49]	chr2	125668	195	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr22	20508122	20508197	9897726	0	+	0.48	(0.459,0.49]	chr22	982589	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr3	49078829	49078929	2273570	0	-	0.48	(0.459,0.49]	chr3	220649	14	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5:ENST00000430979.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr6	17884107	17884206	4014814	0	-	0.474747	(0.459,0.49]	chr6	363394	103	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr7	144340130	144340228	4878163	0	-	0.469388	(0.459,0.49]	chr7	436751	28	INTRON	INTRON	OR2A1-AS1	ENSG00000244479.7	ENST00000493539.1:ENST00000496968.5:ENST00000467944.5:ENST00000486094.5:ENST00000475089.5:ENST00000488041.5:ENST00000478925.5:ENST00000462305.5	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	4.51255	4.67263	4.83271	6.3564e-4	1.09213e-4	0.0193151	0.00442392
chr1	29228480	29228580	556838	0	-	0.48	(0.459,0.49]	chr1	61892	2	SS5_PROX	SS5_PROX:INTRON	MECR	ENSG00000116353.16	ENST00000263702.11:ENST00000373791.7:ENST00000490529.5:ENST00000463052.5:ENST00000489248.5:ENST00000475861.6:ENST00000474946.5:ENST00000482610.1:ENST00000484012.5:ENST00000493928.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr1	163289251	163289351	791496	0	-	0.48	(0.459,0.49]	chr1	88542	403	INTRON	INTRON	RGS5	ENSG00000143248.13	ENST00000618415.4:ENST00000531954.5:ENST00000530241.5:ENST00000534288.5:ENST00000428971.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr1	240457687	240457784	482383	0	+	0.474227	(0.459,0.49]	chr1	51079	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	FMN2	ENSG00000155816.21	ENST00000319653.14:ENST00000681210.1:ENST00000681741.1:ENST00000681824.1:ENST00000545751.3:ENST00000679980.1:ENST00000679390.1:ENST00000681131.1:ENST00000681805.1:ENST00000681296.1:ENST00000679646.1:ENST00000543681.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr10	35460253	35460353	5837071	0	+	0.47	(0.459,0.49]	chr10	524519	44	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr14	60746290	60746389	7639739	0	+	0.474747	(0.459,0.49]	chr14	703326	110	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000555545.1:ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr7	117156791	117156891	4525048	0	+	0.46	(0.459,0.49]	chr7	407379	179	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr9	74991274	74991374	5629696	0	-	0.46	(0.459,0.49]	chr9	504670	59	INTRON	INTRON	CARNMT1	ENSG00000156017.13	ENST00000376834.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.57976	4.672385	4.76501	4.98571e-4	1.46149e-4	0.0160179	0.00564049
chr7	75206260	75206360	4733417	0	-	0.41	(0.392,0.424]	chr7	424889	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000622399.4:ENST00000619312.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	19	2	3.82759	4.6716999999999995	5.51581	1.07176e-6	8.11656e-7	7.36955e-5	5.73396e-5
chr14	32108257	32108356	7584556	0	+	0.373737	(0.36,0.392]	chr14	698928	135	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.83113	4.67159	5.51205	6.41601e-4	2.39077e-6	0.0193935	1.5204e-4
chr3	94092942	94093042	1930374	0	+	0.39	(0.36,0.392]	chr3	194921	77	INTRON	INTRON	NSUN3	ENSG00000178694.10	ENST00000483378.1:ENST00000314622.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.83113	4.67159	5.51205	6.41601e-4	2.39077e-6	0.0193935	1.5204e-4
chr5	81218660	81218759	3523388	0	-	0.363636	(0.36,0.392]	chr5	321987	81	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.83113	4.67159	5.51205	6.41601e-4	2.39077e-6	0.0193935	1.5204e-4
chr3	48443057	48443154	1864637	0	+	0.463918	(0.459,0.49]	chr3	189001	21	INTRON	INTRON	TMA7	ENSG00000232112.3	ENST00000438607.2:ENST00000477624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.85937	4.6699850000000005	5.4806	1.54766e-4	4.11395e-7	0.00599593	3.09732e-5
chr15	43484604	43484704	8147362	0	-	0.49	(0.459,0.49]	chr15	754749	32	INTRON	INTRON	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	3.83471	4.669005	5.5033	7.1123e-10	1e-12	8.5732e-8	1.72912e-10
chr1	66289780	66289879	191470	0	+	0.454545	(0.424,0.459]	chr1	20570	224	INTRON	INTRON	PDE4B	ENSG00000184588.18	ENST00000329654.8:ENST00000341517.9:ENST00000423207.6:ENST00000412480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.56675	4.6688	5.77085	7.38392e-5	5.32819e-8	0.0032006	4.72329e-6
chr13	114013648	114013748	7570592	0	-	0.57	(0.526,0.57]	chr13	696708	4	SS3_PROX	SS3_PROX:INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.07767	4.66877	5.25987	0.00403601	2.82947e-6	0.0817225	1.75466e-4
chr4	822092	822192	2814133	0	-	0.55	(0.526,0.57]	chr4	266244	173	INTRON	INTRON	CPLX1	ENSG00000168993.15	ENST00000304062.11:ENST00000505203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.07767	4.66877	5.25987	0.00403601	2.82947e-6	0.0817225	1.75466e-4
chr1	11987432	11987531	34126	0	+	0.535354	(0.526,0.57]	chr1	3901	45	INTRON	INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.13626	4.667795	5.19933	0.00339748	4.16513e-6	0.0728314	2.48371e-4
chr1	77698723	77698820	664469	0	-	0.56701	(0.526,0.57]	chr1	72523	4	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000533928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.13626	4.667795	5.19933	0.00339748	4.16513e-6	0.0728314	2.48371e-4
chr14	63437882	63437982	7845519	0	-	0.56	(0.526,0.57]	chr14	722469	154	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.13626	4.667795	5.19933	0.00339748	4.16513e-6	0.0728314	2.48371e-4
chr1	193172290	193172390	387639	0	+	0.31	[0,0.32]	chr1	41710	107	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.53638	4.66601	4.79564	5.01883e-4	8.41855e-6	0.0161742	4.71048e-4
chr12	50476061	50476159	6908207	0	+	0.183673	[0,0.32]	chr12	629874	3	UTR3	UTR3:EXON_MRNA	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.53638	4.66601	4.79564	5.01883e-4	8.41855e-6	0.0161742	4.71048e-4
chr6	121120615	121120714	4183031	0	-	0.292929	[0,0.32]	chr6	380744	45	INTRON	INTRON	TBC1D32	ENSG00000146350.14	ENST00000398212.7:ENST00000398197.6:ENST00000464622.5:ENST00000275159.10:ENST00000509492.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.53638	4.66601	4.79564	5.01883e-4	8.41855e-6	0.0161742	4.71048e-4
chr7	72999959	73000058	4729583	0	-	0.393939	(0.392,0.424]	chr7	424053	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5:ENST00000428423.5:ENST00000608210.5:ENST00000448173.5:ENST00000423834.6:ENST00000569650.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	25	2	4.53319	4.66553	4.79787	1.61757e-6	6.13769e-11	1.08646e-4	8.52781e-9
chr12	19694538	19694638	6841784	0	+	0.25	[0,0.32]	chr12	625034	1414	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.75039	4.665475	5.58056	0.00182075	1.7046e-6	0.0469284	1.13343e-4
chr5	55322664	55322764	3176264	0	+	0.27	[0,0.32]	chr5	293349	2	SS5_PROX	SS5_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504388.5:ENST00000503165.5:ENST00000504997.1:ENST00000505565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.75039	4.665475	5.58056	0.00182075	1.7046e-6	0.0469284	1.13343e-4
chr1	26703633	26703733	83514	0	+	0.41	(0.392,0.424]	chr1	8853	57	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr10	73480716	73480816	6165358	0	-	0.42	(0.392,0.424]	chr10	552098	8	INTRON	INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr10	84333697	84333797	5919916	0	+	0.4	(0.392,0.424]	chr10	530702	45	INTRON	INTRON	CCSER2	ENSG00000107771.17	ENST00000359979.8:ENST00000372088.8:ENST00000224756.12	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr11	6502252	6502352	6307659	0	+	0.4	(0.392,0.424]	chr11	565839	1	SS3_PROX	SS3_PROX:INTRON	DNHD1	ENSG00000179532.13	ENST00000473019.5:ENST00000254579.11:ENST00000354685.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr15	41649023	41649123	7952041	0	+	0.41	(0.392,0.424]	chr15	734958	271	INTRON	INTRON	MGA	ENSG00000174197.18	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr17	77297789	77297889	8806105	0	+	0.41	(0.392,0.424]	chr17	838928	25	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr2	48442962	48443061	1025937	0	+	0.414141	(0.392,0.424]	chr2	110335	11	INTRON	INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5:ENST00000421486.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr2	117980809	117980908	1552932	0	-	0.424242	(0.392,0.424]	chr2	161077	24	INTRON	INTRON	CCDC93	ENSG00000125633.11	ENST00000319432.9:ENST00000376300.7:ENST00000460781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr4	53052247	53052347	2899326	0	-	0.42	(0.392,0.424]	chr4	272927	1310	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr5	108839261	108839360	3268667	0	+	0.393939	(0.392,0.424]	chr5	301189	31	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000502752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr6	4063891	4063990	3690877	0	+	0.40404	(0.392,0.424]	chr6	336447	34	UTR3	UTR3:EXON_MRNA:INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6:ENST00000461612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr6	148774659	148774759	3920686	0	+	0.4	(0.392,0.424]	chr6	357405	266	INTRON	INTRON	UST	ENSG00000111962.8	ENST00000367463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr8	51859248	51859348	5167041	0	-	0.4	(0.392,0.424]	chr8	463277	88	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519975.1:ENST00000521344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr9	15483436	15483535	5581876	0	-	0.414141	(0.392,0.424]	chr9	500643	34	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr9	95884822	95884921	5438761	0	+	0.40404	(0.392,0.424]	chr9	485384	16	INTRON	INTRON	ERCC6L2	ENSG00000182150.19	ENST00000402838.3:ENST00000288985.13:ENST00000683937.1:ENST00000682748.1:ENST00000683991.1:ENST00000682983.1:ENST00000456993.7:ENST00000682394.1:ENST00000683350.1:ENST00000670016.1:ENST00000653738.2:ENST00000659728.1:ENST00000683156.1:ENST00000683176.1:ENST00000683227.1:ENST00000683128.1:ENST00000653324.2:ENST00000661047.1:ENST00000426805.2:ENST00000466840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.15239	4.665245	5.1781	0.00572894	2.48959e-5	0.105396	0.00122627
chr3	119522306	119522406	1961811	0	+	0.42	(0.392,0.424]	chr3	197584	46	INTRON	INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000492164.5:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	4.38789	4.66454	4.94119	4.13968e-8	1.23024e-8	3.74186e-6	1.23695e-6
chr11	77767287	77767387	6659775	0	-	0.42	(0.392,0.424]	chr11	610669	22	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr12	1421826	1421925	6792622	0	+	0.424242	(0.392,0.424]	chr12	620244	31	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000539802.2:ENST00000691140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr14	55059761	55059861	7626332	0	+	0.4	(0.392,0.424]	chr14	701734	76	INTRON	INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr16	4080371	4080471	8500317	0	-	0.42	(0.392,0.424]	chr16	796874	263	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr2	28907964	28908062	971760	0	+	0.408163	(0.392,0.424]	chr2	106194	10	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr21	15029428	15029528	9843298	0	-	0.41	(0.392,0.424]	chr21	976988	146	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr7	69810578	69810678	4408818	0	+	0.42	(0.392,0.424]	chr7	396954	1470	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.21741	4.66433	5.11125	0.00496616	3.31137e-5	0.0964485	0.00159224
chr5	14589222	14589322	3125756	0	+	0.48	(0.459,0.49]	chr5	289528	69	INTRON	INTRON	OTULINL	ENSG00000145569.6	ENST00000274217.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.28074	4.664295	5.04785	2.39418e-5	3.57604e-6	0.00119556	2.18487e-4
chr4	88849320	88849420	2953225	0	-	0.43	(0.424,0.459]	chr4	277814	261	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.61423	4.664235	4.71424	3.07139e-4	4.85762e-7	0.0105767	3.605e-5
chr9	37295801	37295901	5380693	0	+	0.35	(0.32,0.36]	chr9	480694	111	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	4.2286	4.664085	5.09957	1.30322e-6	1e-12	8.87161e-5	1.73382e-10
chr10	76103774	76103874	5910346	0	+	0.56	(0.526,0.57]	chr10	530132	446	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.63387	4.6637450000000005	4.69362	2.57391e-4	1.98837e-4	0.00911512	0.00746609
chr12	57407485	57407585	7181994	0	-	0.53	(0.526,0.57]	chr12	663024	113	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.63387	4.6637450000000005	4.69362	2.57391e-4	1.98837e-4	0.00911512	0.00746609
chr17	42421229	42421329	8934238	0	-	0.55	(0.526,0.57]	chr17	858217	155	INTRON	INTRON	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.63387	4.6637450000000005	4.69362	2.57391e-4	1.98837e-4	0.00911512	0.00746609
chr20	50085949	50086048	9763090	0	-	0.555556	(0.526,0.57]	chr20	967525	13	INTRON	INTRON	UBE2V1	ENSG00000244687.13	ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000557021.5:ENST00000617119.4:ENST00000625172.3:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1:ENST00000493090.5:ENST00000467839.5:ENST00000472923.5:ENST00000432266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.63387	4.6637450000000005	4.69362	2.57391e-4	1.98837e-4	0.00911512	0.00746609
chr13	102677826	102677926	7442205	0	+	0.39	(0.36,0.392]	chr13	685073	2	SS3_PROX	SS3_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1:ENST00000466153.5:ENST00000652033.1:ENST00000651823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	4.38376	4.663505	4.94325	1.64803e-5	2.68414e-8	8.48507e-4	2.52989e-6
chr22	40056383	40056482	9946431	0	+	0.393939	(0.392,0.424]	chr22	989390	104	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.30978	4.663375	5.01697	7.17587e-8	7.03248e-9	6.27925e-6	7.35448e-7
chr11	19630356	19630456	6340520	0	+	0.4	(0.392,0.424]	chr11	568833	2790	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	4.2818	4.662595	5.04339	6.75864e-10	1e-12	8.16339e-8	1.72912e-10
chr15	78450254	78450353	8047880	0	+	0.252525	[0,0.32]	chr15	743819	100	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.45912	4.66216	4.8652	4.11137e-4	1.18389e-5	0.0138446	6.49715e-4
chr3	143027653	143027753	2036649	0	+	0.22	[0,0.32]	chr3	203572	4	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	4.45912	4.66216	4.8652	4.11137e-4	1.18389e-5	0.0138446	6.49715e-4
chr1	158036721	158036821	311884	0	+	0.51	(0.49,0.526]	chr1	34672	426	INTRON	INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.41836	4.66195	5.90554	0.00136895	1.93601e-9	0.0359623	2.18285e-7
chr10	35469632	35469732	5837165	0	+	0.55	(0.526,0.57]	chr10	524519	138	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	4.08256	4.66181	5.24106	4.03572e-10	1.34659e-12	5.02379e-8	2.28243e-10
chr1	34720908	34721008	566041	0	-	0.58	(0.57,0.629]	chr1	63628	21	INTRON	INTRON	SMIM12	ENSG00000163866.9	ENST00000426886.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	33	2	4.57357	4.6609	4.74823	3.84418e-8	2.15631e-9	3.50528e-6	2.42843e-7
chr11	2980322	2980420	6538744	0	-	0.520408	(0.49,0.526]	chr11	593857	7	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.38975	4.65958	4.92941	9.92102e-4	4.32628e-5	0.0276375	0.00200309
chr12	93433065	93433165	7236270	0	-	0.5	(0.49,0.526]	chr12	667201	83	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.38975	4.65958	4.92941	9.92102e-4	4.32628e-5	0.0276375	0.00200309
chr17	37306061	37306161	8918654	0	-	0.5	(0.49,0.526]	chr17	855228	64	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.38975	4.65958	4.92941	9.92102e-4	4.32628e-5	0.0276375	0.00200309
chr3	32754221	32754320	1823161	0	+	0.50505	(0.49,0.526]	chr3	184464	5	INTRON	INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1:ENST00000471003.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.38975	4.65958	4.92941	9.92102e-4	4.32628e-5	0.0276375	0.00200309
chr3	125856279	125856379	2421141	0	-	0.52	(0.49,0.526]	chr3	232065	24	INTRON	INTRON	LINC02614	ENSG00000241288.8	ENST00000599350.5:ENST00000601985.5:ENST00000664857.1:ENST00000657594.1:ENST00000594843.1:ENST00000617582.1:ENST00000622381.4:ENST00000625484.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	4.38975	4.65958	4.92941	9.92102e-4	4.32628e-5	0.0276375	0.00200309
chr12	21509939	21510037	6845727	0	+	0.520408	(0.49,0.526]	chr12	625251	10	INTRON	INTRON	GOLT1B	ENSG00000111711.10	ENST00000535593.5:ENST00000229314.10:ENST00000542038.5:ENST00000540141.5:ENST00000545093.5:ENST00000539663.5:ENST00000539025.5:ENST00000542194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.4628	4.65909	4.85538	7.611e-4	6.26806e-5	0.0225125	0.00277665
chr17	59927861	59927959	8758830	0	+	0.520408	(0.49,0.526]	chr17	833799	9	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000489824.1:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.4628	4.65909	4.85538	7.611e-4	6.26806e-5	0.0225125	0.00277665
chr3	11665371	11665471	2173881	0	-	0.5	(0.49,0.526]	chr3	212357	216	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.4628	4.65909	4.85538	7.611e-4	6.26806e-5	0.0225125	0.00277665
chr9	33845912	33846012	5369183	0	+	0.5	(0.49,0.526]	chr9	479420	276	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.4628	4.65909	4.85538	7.611e-4	6.26806e-5	0.0225125	0.00277665
chrX	119434452	119434552	10212098	0	+	0.51	(0.49,0.526]	chrX	1017169	77	INTRON	INTRON	SLC25A43	ENSG00000077713.19	ENST00000217909.8:ENST00000488158.5:ENST00000493093.5:ENST00000484058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.4628	4.65909	4.85538	7.611e-4	6.26806e-5	0.0225125	0.00277665
chr12	43981833	43981933	6884205	0	+	0.48	(0.459,0.49]	chr12	628131	371	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	4.54548	4.65888	4.77228	9.96436e-11	2.44382e-12	1.34398e-8	4.04109e-10
chr15	50342082	50342182	8164549	0	-	0.49	(0.459,0.49]	chr15	756951	149	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	4.54548	4.65888	4.77228	9.96436e-11	2.44382e-12	1.34398e-8	4.04109e-10
chr2	222620037	222620137	1702791	0	-	0.45	(0.424,0.459]	chr2	175163	3	SS3_PROX	SS3_PROX:INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.5463	4.658575	5.77085	0.00153741	5.32819e-8	0.0389999	4.72329e-6
chr12	123512558	123512658	7314351	0	-	0.51	(0.49,0.526]	chr12	675726	127	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	4.44286	4.658545	4.87423	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	44391409	44391509	7961636	0	+	0.61	(0.57,0.629]	chr15	736618	93	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.28422	4.657780000000001	5.03134	0.00145677	1.22122e-5	0.0382827	6.58806e-4
chr2	232254742	232254842	1337711	0	+	0.59	(0.57,0.629]	chr2	138215	50	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000445090.5:ENST00000325385.12:ENST00000433430.5:ENST00000498319.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.28422	4.657780000000001	5.03134	0.00145677	1.22122e-5	0.0382827	6.58806e-4
chr3	45529284	45529384	1858477	0	+	0.61	(0.57,0.629]	chr3	188092	48	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1:ENST00000467936.5:ENST00000485461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.28422	4.657780000000001	5.03134	0.00145677	1.22122e-5	0.0382827	6.58806e-4
chr1	50617543	50617643	611121	0	-	0.35	(0.32,0.36]	chr1	68244	107	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	71	2	4.51566	4.65755	4.79944	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	216504384	216504484	1310759	0	+	0.36	(0.32,0.36]	chr2	134806	4	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.02125	4.657215000000001	5.29318	3.53532e-4	1.5251e-5	0.0122629	8.01855e-4
chr3	23382959	23383059	1787567	0	+	0.33	(0.32,0.36]	chr3	183405	590	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	4.02125	4.657215000000001	5.29318	3.53532e-4	1.5251e-5	0.0122629	8.01855e-4
chr4	168788429	168788529	2787923	0	+	0.48	(0.459,0.49]	chr4	264125	758	INTRON	INTRON	PALLD	ENSG00000129116.19	ENST00000505667.6:ENST00000261509.10:ENST00000512127.5:ENST00000649826.1:ENST00000510998.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	3.97601	4.654095	5.33218	1.78412e-6	7.08572e-7	1.1709e-4	5.07254e-5
chr12	45770786	45770885	6891411	0	+	0.40404	(0.392,0.424]	chr12	628366	149	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	3.97957	4.65362	5.32767	5.95442e-6	4.95123e-6	3.4453e-4	2.96695e-4
chr3	149831549	149831648	2040408	0	+	0.393939	(0.392,0.424]	chr3	204062	86	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	3.97957	4.65362	5.32767	5.95442e-6	4.95123e-6	3.4453e-4	2.96695e-4
chr6	63697033	63697132	3803214	0	+	0.424242	(0.392,0.424]	chr6	348838	19	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	4.54701	4.65249	4.75797	0.00102713	2.01084e-7	0.0276375	1.60882e-5
chr1	204557722	204557822	407652	0	+	0.35	(0.32,0.36]	chr1	43974	82	UTR3	UTR3:EXON_MRNA	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.90902	4.6523900000000005	5.39576	5.03152e-4	9.86331e-6	0.0161742	5.39872e-4
chr5	128023308	128023407	3586282	0	-	0.333333	(0.32,0.36]	chr5	325643	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000606855.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000659415.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	3.90902	4.6523900000000005	5.39576	5.03152e-4	9.86331e-6	0.0161742	5.39872e-4
chr9	6447672	6447772	5329329	0	+	0.35	(0.32,0.36]	chr9	477032	131	INTRON	INTRON	UHRF2	ENSG00000147854.17	ENST00000468435.6:ENST00000276893.10:ENST00000481049.5:ENST00000450508.1:ENST00000484159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.90902	4.6523900000000005	5.39576	5.03152e-4	9.86331e-6	0.0161742	5.39872e-4
chr10	118677500	118677599	6270924	0	-	0.333333	(0.32,0.36]	chr10	560942	12	UTR3	UTR3:EXON_MRNA:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	4.16471	4.65214	5.13957	9.22891e-5	6.71414e-5	0.00388567	0.00291649
chr16	19685079	19685179	8341684	0	+	0.34	(0.32,0.36]	chr16	777553	23	INTRON	INTRON	VPS35L	ENSG00000103544.16	ENST00000251143.9:ENST00000438132.7:ENST00000542263.5:ENST00000417362.7:ENST00000543152.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.16471	4.65214	5.13957	9.22891e-5	6.71414e-5	0.00388567	0.00291649
chr5	72871351	72871450	3211603	0	+	0.353535	(0.32,0.36]	chr5	296473	53	INTRON	INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000506528.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.16471	4.65214	5.13957	9.22891e-5	6.71414e-5	0.00388567	0.00291649
chr20	37523298	37523394	9741242	0	-	0.53125	(0.526,0.57]	chr20	964964	15	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6:ENST00000397135.1:ENST00000397131.1:ENST00000445723.5:ENST00000414080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	3.32233	4.6520150000000005	5.9817	1.36681e-4	5.835e-10	0.00539233	7.10688e-8
chr1	45848674	45848774	137637	0	+	0.4	(0.392,0.424]	chr1	16875	187	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000470809.1:ENST00000361297.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.47186	4.6516399999999996	5.83142	0.00366403	3.48252e-8	0.0766409	3.23132e-6
chr6	170352383	170352482	3981895	0	+	0.383838	(0.36,0.392]	chr6	361102	37	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	4.16593	4.6515699999999995	5.13721	1.75343e-10	1e-12	2.29042e-8	1.72912e-10
chr1	156746162	156746258	782363	0	-	0.385417	(0.36,0.392]	chr1	86943	4	INTRON	INTRON	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5:ENST00000368206.5:ENST00000469145.5:ENST00000471377.5:ENST00000495212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr1	236800031	236800131	463303	0	+	0.38	(0.36,0.392]	chr1	49987	39	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr10	14843027	14843108	5797688	0	+	0.37037	(0.36,0.392]	chr10	522047	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000284024:HSPA14	ENSG00000284024.4:ENSG00000187522.16	ENST00000645667.1:ENST00000378372.8:ENST00000640019.3:ENST00000441647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr15	50646709	50646808	8165673	0	-	0.363636	(0.36,0.392]	chr15	757162	28	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr17	16006568	16006668	8659009	0	+	0.39	(0.36,0.392]	chr17	818809	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr17	19862732	19862830	8893291	0	-	0.377551	(0.36,0.392]	chr17	851603	13	INTRON	INTRON	ULK2	ENSG00000083290.20	ENST00000361658.6:ENST00000395544.9:ENST00000580118.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr17	47470891	47470991	8953561	0	-	0.37	(0.36,0.392]	chr17	861251	137	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr2	39117337	39117437	1424585	0	-	0.39	(0.36,0.392]	chr2	148245	488	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr20	46084534	46084634	9750943	0	-	0.37	(0.36,0.392]	chr20	966284	47	INTRON	INTRON	NCOA5	ENSG00000124160.12	ENST00000290231.11:ENST00000372291.3	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr6	138623624	138623724	4216645	0	-	0.38	(0.36,0.392]	chr6	383486	512	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000491526.6:ENST00000468095.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chrX	56984978	56985077	10353925	0	-	0.383838	(0.36,0.392]	chrX	1028488	1	INTRON	INTRON	SPIN3	ENSG00000204271.13	ENST00000640101.1:ENST00000638664.1:ENST00000640577.1:ENST00000639809.1:ENST00000640131.1:ENST00000640717.1:ENST00000638873.1:ENST00000640463.1:ENST00000639888.1:ENST00000640511.1:ENST00000639895.1:ENST00000638819.1:ENST00000639956.1:ENST00000639607.1:ENST00000640187.1:ENST00000638940.1:ENST00000639482.1:ENST00000478405.1:ENST00000639053.1:ENST00000640104.1:ENST00000639418.1:ENST00000640421.1:ENST00000475785.7:ENST00000639794.1:ENST00000640507.1:ENST00000639257.1:ENST00000640039.1:ENST00000638834.1:ENST00000639000.1:ENST00000640728.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	8	2	4.26063	4.64992	5.03921	0.00451705	9.59768e-5	0.0875511	0.00399331
chr5	108904338	108904438	3269327	0	+	0.45	(0.424,0.459]	chr5	301228	61	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	3.47733	4.6493899999999995	5.82145	2.01844e-4	1.92567e-8	0.00755335	1.85307e-6
chr12	65443838	65443937	6942563	0	+	0.414141	(0.392,0.424]	chr12	635375	745	INTRON	INTRON	MSRB3	ENSG00000174099.12	ENST00000355192.8:ENST00000541897.5:ENST00000308259.10:ENST00000540804.5:ENST00000535664.5:ENST00000541189.5:ENST00000642411.1:ENST00000538045.5:ENST00000614640.4:ENST00000535239.5:ENST00000646299.1:ENST00000642404.1:ENST00000446731.2:ENST00000647481.1:ENST00000535143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	4.2818	4.649385	5.01697	7.03248e-9	6.75864e-10	7.35448e-7	8.16339e-8
chr4	139409680	139409780	2743866	0	+	0.39	(0.36,0.392]	chr4	260789	48	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	4.13966	4.6493199999999995	5.15898	1.17436e-11	1e-12	1.79779e-9	1.73382e-10
chr16	56829609	56829692	8397604	0	+	0.409639	(0.392,0.424]	chr16	784831	1	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.44207	4.649305	4.85654	1.84333e-4	5.58952e-6	0.00688171	3.2822e-4
chr17	39539888	39539987	8711405	0	+	0.424242	(0.392,0.424]	chr17	825693	55	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000559663.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	13	2	4.44207	4.649305	4.85654	1.84333e-4	5.58952e-6	0.00688171	3.2822e-4
chr5	79633965	79634064	3228815	0	+	0.414141	(0.392,0.424]	chr5	298252	101	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.44207	4.649305	4.85654	1.84333e-4	5.58952e-6	0.00688171	3.2822e-4
chr8	17926663	17926763	4938436	0	+	0.41	(0.392,0.424]	chr8	441205	20	EXON_MRNA	EXON_MRNA:INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000517545.5:ENST00000518537.5:ENST00000518936.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	4.44207	4.649305	4.85654	1.84333e-4	5.58952e-6	0.00688171	3.2822e-4
chr1	117455697	117455797	272202	0	+	0.38	(0.36,0.392]	chr1	28103	130	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr1	193122906	193123006	387130	0	+	0.37	(0.36,0.392]	chr1	41633	3	SS5_PROX	SS5_PROX:INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000643784.1:ENST00000648071.1:ENST00000635846.1:ENST00000649606.1:ENST00000647662.1:ENST00000482484.1:ENST00000649706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr1	246394930	246395030	917416	0	-	0.37	(0.36,0.392]	chr1	100995	395	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr11	10190840	10190938	6561405	0	-	0.367347	(0.36,0.392]	chr11	596543	20	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr2	31908262	31908361	1410818	0	-	0.383838	(0.36,0.392]	chr2	146736	146	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr4	128497348	128497448	2741302	0	+	0.37	(0.36,0.392]	chr4	260477	135	INTRON	INTRON	LINC02615	ENSG00000251432.8	ENST00000511497.5:ENST00000662621.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.3312	4.64919	4.96718	0.00387074	1.24104e-4	0.078873	0.0049353
chr7	5680186	5680286	4618352	0	-	0.52	(0.49,0.526]	chr7	415953	273	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	3.57253	4.6489	5.72527	2.38382e-5	1.60521e-8	0.00119556	1.5647e-6
chr19	53089914	53090013	9536781	0	-	0.454545	(0.424,0.459]	chr19	943002	32	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	4.11093	4.648505	5.18608	5.36389e-5	8.58015e-11	0.00243585	1.16412e-8
chr11	31512882	31512982	6361406	0	+	0.4	(0.392,0.424]	chr11	569857	4	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000474374.5:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638508.1:ENST00000638184.1:ENST00000640921.1:ENST00000638376.1:ENST00000638984.1:ENST00000640790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.39796	4.6485	5.89904	0.00439831	2.16736e-8	0.0875511	2.09062e-6
chrX	13693373	13693473	10084200	0	+	0.52	(0.49,0.526]	chrX	1005777	37	INTRON	INTRON	RAB9A	ENSG00000123595.8	ENST00000464506.2:ENST00000243325.6:ENST00000618931.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	4.59165	4.648415	4.70518	8.79223e-8	1.2507e-8	7.5628e-6	1.25541e-6
chr17	43063773	43063873	8936501	0	-	0.38	(0.36,0.392]	chr17	858854	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000644379.1:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	98	2	4.45031	4.64686	4.84341	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	30873518	30873617	9929087	0	+	0.626263	(0.57,0.629]	chr22	986154	11	INTRON	INTRON	OSBP2	ENSG00000184792.16	ENST00000438716.3:ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000446658.6:ENST00000401475.5:ENST00000445781.5:ENST00000424224.5:ENST00000437268.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.98068	4.64674	5.3128	0.0053729	9.9438e-7	0.100211	7.00342e-5
chrX	9521105	9521204	10077972	0	+	0.383838	(0.36,0.392]	chrX	1005235	189	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	4.03087	4.646520000000001	5.26217	3.77193e-6	4.53146e-10	2.29843e-4	5.61917e-8
chr1	16372999	16373099	57403	0	+	0.53	(0.526,0.57]	chr1	5650	46	INTRON	INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	4.59829	4.645955000000001	4.69362	1.98837e-4	4.99738e-8	0.00746609	4.53531e-6
chr1	11217628	11217728	519294	0	-	0.57	(0.526,0.57]	chr1	55952	10	INTRON	INTRON	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.38241	4.645215	4.90802	0.00101891	4.81512e-5	0.0276375	0.00220626
chr1	28400211	28400311	88623	0	+	0.53	(0.526,0.57]	chr1	9633	300	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.38241	4.645215	4.90802	0.00101891	4.81512e-5	0.0276375	0.00220626
chr16	121922	122020	8485938	0	-	0.530612	(0.526,0.57]	chr16	794079	23	INTRON	INTRON	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5:ENST00000456528.5:ENST00000419636.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.38241	4.645215	4.90802	0.00101891	4.81512e-5	0.0276375	0.00220626
chrX	56748682	56748782	10138267	0	+	0.27	[0,0.32]	chrX	1011168	161	INTRON	INTRON	NBDY	ENSG00000204272.13	ENST00000637096.1:ENST00000374922.9:ENST00000423617.2:ENST00000451583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	4.39782	4.645185	4.89255	0.00334699	2.15736e-7	0.0734189	1.70234e-5
chr6	37900873	37900973	3771395	0	+	0.41	(0.392,0.424]	chr6	345064	805	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.36677	4.644895	4.92302	1.45314e-4	8.10105e-6	0.00569484	4.57465e-4
chr1	207769078	207769174	417681	0	+	0.541667	(0.526,0.57]	chr1	45102	14	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr15	76213425	76213525	8241204	0	-	0.55	(0.526,0.57]	chr15	765426	70	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr17	75510669	75510767	9010740	0	-	0.55102	(0.526,0.57]	chr17	869224	9	INTRON	INTRON	CASKIN2	ENSG00000177303.10	ENST00000321617.8:ENST00000581870.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr2	32308840	32308940	978713	0	+	0.54	(0.526,0.57]	chr2	106849	18	UTR3	UTR3:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr6	20180453	20180553	4017394	0	-	0.57	(0.526,0.57]	chr6	363599	273	INTRON	INTRON	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr7	74882812	74882905	4732485	0	-	0.548387	(0.526,0.57]	chr7	424650	8	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L2	ENSG00000277072.5	ENST00000651031.1:ENST00000650988.1:ENST00000652688.1:ENST00000426587.5:ENST00000622110.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	12	2	4.44169	4.644815	4.84794	8.21639e-4	6.50622e-5	0.0238903	0.00284455
chr8	42169350	42169446	4975517	0	+	0.28125	[0,0.32]	chr8	446274	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000396926.8:ENST00000520689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.35176	4.64409	5.93642	0.0102933	3.87502e-8	0.170122	3.55241e-6
chr17	29892721	29892821	8905890	0	-	0.45	(0.424,0.459]	chr17	853496	434	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000578411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	4.63564	4.642195	4.64875	2.48943e-10	1.40003e-10	3.17004e-8	1.85644e-8
chr9	36069558	36069658	5376792	0	+	0.31	[0,0.32]	chr9	480448	23	INTRON	INTRON	RECK	ENSG00000122707.12	ENST00000377966.4:ENST00000475774.5:ENST00000479053.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	4.24175	4.64203	5.04231	6.90565e-5	3.40623e-8	0.00300464	3.14246e-6
chr12	132655056	132655155	7324787	0	-	0.343434	(0.32,0.36]	chr12	676869	38	INTRON	INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000536445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	4.61138	4.641484999999999	4.67159	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	9507038	9507137	10077831	0	+	0.454545	(0.424,0.459]	chrX	1005235	48	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	3.45918	4.641375	5.82357	1.41452e-8	1e-12	1.40097e-6	1.73382e-10
chr1	202527362	202527462	403070	0	+	0.44	(0.424,0.459]	chr1	43256	246	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.01346	4.64051	5.26756	0.00778514	8.0232e-6	0.130982	4.54299e-4
chr17	69477766	69477866	8794080	0	+	0.44	(0.424,0.459]	chr17	836396	624	INTRON	INTRON	MAP2K6	ENSG00000108984.15	ENST00000590474.7:ENST00000586641.5:ENST00000359094.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.01346	4.64051	5.26756	0.00778514	8.0232e-6	0.130982	4.54299e-4
chr3	160299860	160299947	2478774	0	-	0.436782	(0.424,0.459]	chr3	237754	2	INTRON	INTRON	IFT80	ENSG00000068885.15	ENST00000326448.12:ENST00000483465.5:ENST00000496589.5:ENST00000487943.5:ENST00000483325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.01346	4.64051	5.26756	0.00778514	8.0232e-6	0.130982	4.54299e-4
chr7	102791056	102791156	4499905	0	+	0.44	(0.424,0.459]	chr7	405319	32	INTRON	INTRON	FAM185A	ENSG00000222011.9	ENST00000442873.5:ENST00000413034.3:ENST00000420217.1:ENST00000409231.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.01346	4.64051	5.26756	0.00778514	8.0232e-6	0.130982	4.54299e-4
chrX	68389071	68389171	10368088	0	-	0.45	(0.424,0.459]	chrX	1029261	52	INTRON	INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000679914.1:ENST00000680503.1:ENST00000681520.1:ENST00000680595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.01346	4.64051	5.26756	0.00778514	8.0232e-6	0.130982	4.54299e-4
chr20	49287259	49287358	9669277	0	+	0.50505	(0.49,0.526]	chr20	955630	51	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	3.26127	4.64049	6.01971	2.44493e-5	2.59274e-10	0.00121977	3.28602e-8
chr20	13810589	13810688	9583141	0	+	0.313131	[0,0.32]	chr20	947993	13	INTRON	INTRON	NDUFAF5	ENSG00000101247.18	ENST00000378081.9:ENST00000378106.10:ENST00000463598.1:ENST00000475968.5:ENST00000481249.5:ENST00000476536.5:ENST00000479716.5:ENST00000487478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	3.75789	4.63992	5.52195	5.50419e-6	1.99332e-11	3.23814e-4	2.93023e-9
chr1	93341304	93341403	695671	0	-	0.313131	[0,0.32]	chr1	75364	4	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000451302.6:ENST00000668257.1:ENST00000661111.1:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000670231.1:ENST00000411670.5:ENST00000452347.6:ENST00000653362.1:ENST00000655606.1:ENST00000445076.2:ENST00000457387.2:ENST00000438777.5:ENST00000449305.5	lncRNA	lncRNA	lncRNA	lncRNA	4	18	2	3.91531	4.6392500000000005	5.36319	1.13263e-5	7.60334e-8	6.25152e-4	6.5948e-6
chr17	43236461	43236561	8937826	0	-	0.51	(0.49,0.526]	chr17	859071	63	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	20	172	2	4.47066	4.639225	4.80779	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	28632993	28633093	555899	0	-	0.45	(0.424,0.459]	chr1	61747	86	INTRON	INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr12	29726670	29726770	7131336	0	-	0.43	(0.424,0.459]	chr12	654840	654	INTRON	INTRON	TMTC1	ENSG00000133687.16	ENST00000256062.9:ENST00000539277.6:ENST00000551659.5:ENST00000552618.5:ENST00000553189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr12	122362439	122362534	7307843	0	-	0.452632	(0.424,0.459]	chr12	674821	9	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000540304.6:ENST00000537004.5:ENST00000541108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr16	73079148	73079248	8590261	0	-	0.44	(0.424,0.459]	chr16	810316	196	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr18	51071166	51071265	9122786	0	+	0.434343	(0.424,0.459]	chr18	880305	36	INTRON	INTRON	SMAD4	ENSG00000141646.15	ENST00000398417.6:ENST00000342988.8:ENST00000611848.2:ENST00000588745.5:ENST00000592186.5:ENST00000591126.5:ENST00000684953.1:ENST00000688574.1:ENST00000685232.1:ENST00000685090.1:ENST00000691124.1:ENST00000590499.1:ENST00000593223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr2	169951660	169951760	1204218	0	+	0.43	(0.424,0.459]	chr2	126267	12	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000487689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr22	28271197	28271297	10004011	0	-	0.43	(0.424,0.459]	chr22	996519	1072	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr5	32242725	32242823	3431096	0	-	0.428571	(0.424,0.459]	chr5	315594	2	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chrX	44994782	44994882	10118853	0	+	0.45	(0.424,0.459]	chrX	1008827	177	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.09426	4.63907	5.18388	0.00651192	1.21594e-5	0.116758	6.58699e-4
chr11	67234456	67234556	6424360	0	+	0.35	(0.32,0.36]	chr11	579044	21	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000525041.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	3.39891	4.6373	5.87569	0.00108651	1e-12	0.0301638	1.73382e-10
chr11	62597867	62597923	6615973	0	-	0.589286	(0.57,0.629]	chr11	603657	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.77045	4.636925	5.5034	9.07674e-5	1.59473e-7	0.00383949	1.31413e-5
chr9	114349484	114349581	5699625	0	-	0.628866	(0.57,0.629]	chr9	511520	6	INTRON	INTRON	AKNA	ENSG00000106948.17	ENST00000307564.8:ENST00000374088.8:ENST00000374075.9:ENST00000223791.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.77045	4.636925	5.5034	9.07674e-5	1.59473e-7	0.00383949	1.31413e-5
chr1	28375922	28376022	88380	0	+	0.58	(0.57,0.629]	chr1	9633	57	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	4.17442	4.636675	5.09893	7.91825e-6	2.71799e-6	4.54299e-4	1.71473e-4
chrX	73849826	73849925	10373711	0	-	0.717172	(0.629,1]	chrX	1029968	125	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	4.12808	4.63563	5.14318	3.40591e-6	1.10056e-6	2.08838e-4	7.55889e-5
chr12	27662314	27662411	6855010	0	+	0.443299	(0.424,0.459]	chr12	626145	10	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000542629.5:ENST00000537261.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	4.51855	4.63394	4.74933	8.67885e-7	9.96009e-8	6.19626e-5	8.4812e-6
chr3	41954759	41954807	2246460	0	-	0.458333	(0.424,0.459]	chr3	216989	1	UTR5	UTR5:EXON_MRNA:INTRON	ULK4	ENSG00000168038.11	ENST00000301831.9:ENST00000420927.5:ENST00000459802.5:ENST00000497684.1:ENST00000453224.5:ENST00000431379.5:ENST00000414606.1:ENST00000460978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	3.23804	4.6337600000000005	6.02948	0.00649971	1.8912e-9	0.114061	2.1436e-7
chr6	49467789	49467887	3791843	0	+	0.438776	(0.424,0.459]	chr6	347877	40	INTRON	INTRON	CENPQ	ENSG00000031691.7	ENST00000335783.4	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.23804	4.6337600000000005	6.02948	0.00649971	1.8912e-9	0.114061	2.1436e-7
chr20	32428954	32429050	9626677	0	+	0.4375	(0.424,0.459]	chr20	950178	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000470145.3:ENST00000645514.1:ENST00000644615.1:ENST00000647223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	4.29889	4.63349	4.96809	6.10851e-5	1.12945e-5	0.0027377	6.02727e-4
chr8	25413749	25413847	4951880	0	+	0.438776	(0.424,0.459]	chr8	443626	26	UTR3	UTR3:EXON_MRNA:INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000479547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	4.29889	4.63349	4.96809	6.10851e-5	1.12945e-5	0.0027377	6.02727e-4
chr1	236802327	236802427	463326	0	+	0.44	(0.424,0.459]	chr1	49987	62	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.89477	4.63316	5.37155	2.5121e-4	2.42251e-6	0.00902798	1.53938e-4
chr20	35727824	35727923	9736068	0	-	0.525253	(0.49,0.526]	chr20	964208	23	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.98392	4.63267	5.28142	3.07012e-5	2.46593e-6	0.00150487	1.54892e-4
chr1	55215196	55215280	630063	0	-	0.797619	(0.629,1]	chr1	70418	2	UTR5	UTR5:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.57849	4.63206	4.68563	2.2493e-4	1.13329e-4	0.00827964	0.00463413
chr1	12585342	12585441	520675	0	-	0.494949	(0.49,0.526]	chr1	56279	43	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	35	278	2	4.23349	4.632009999999999	5.03053	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	35362089	35362189	104568	0	+	0.29	[0,0.32]	chr1	11755	3	SS5_PROX	SS5_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000482131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr1	121353605	121353705	281595	0	+	0.31	[0,0.32]	chr1	28926	286	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr10	31464032	31464132	5828886	0	+	0.22	[0,0.32]	chr10	523997	24	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr11	19163002	19163102	6337579	0	+	0.32	[0,0.32]	chr11	568794	3	SS3_PROX	SS3_PROX:INTRON	ZDHHC13	ENSG00000177054.14	ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr14	71484394	71484493	7687162	0	+	0.242424	[0,0.32]	chr14	706558	168	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5:ENST00000557712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr15	68153872	68153961	8018443	0	+	0.280899	[0,0.32]	chr15	741426	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000564009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr2	15555991	15556088	1386159	0	-	0.309278	[0,0.32]	chr2	143539	15	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr2	152359410	152359510	1175145	0	+	0.29	[0,0.32]	chr2	124520	233	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr20	31671826	31671925	9722396	0	-	0.222222	[0,0.32]	chr20	962371	43	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr22	35875772	35875872	10027080	0	-	0.27	[0,0.32]	chr22	998794	353	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr3	33827959	33828059	1825331	0	+	0.27	[0,0.32]	chr3	184721	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr3	132522327	132522427	1998492	0	+	0.32	[0,0.32]	chr3	201277	1	SS3_PROX	SS3_PROX:INTRON	DNAJC13	ENSG00000138246.17	ENST00000260818.11:ENST00000650455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr6	34332165	34332265	4042894	0	-	0.28	[0,0.32]	chr6	368507	361	INTRON	INTRON	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr6	80307892	80307992	3824995	0	+	0.25	[0,0.32]	chr6	350369	343	INTRON	INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr6	128069581	128069680	4188683	0	-	0.292929	[0,0.32]	chr6	381355	14	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr8	63197317	63197417	4994296	0	+	0.28	[0,0.32]	chr8	448026	84	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr8	91074411	91074509	5022434	0	+	0.244898	[0,0.32]	chr8	450700	1	INTRON	INTRON	OTUD6B	ENSG00000155100.11	ENST00000285420.8:ENST00000617869.4:ENST00000615618.1:ENST00000522894.5:ENST00000404789.8:ENST00000524027.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr9	109478936	109479036	5688045	0	-	0.27	[0,0.32]	chr9	509973	151	INTRON	INTRON	PTPN3	ENSG00000070159.14	ENST00000262539.7:ENST00000374541.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chrX	129553035	129553135	10222412	0	+	0.32	[0,0.32]	chrX	1017781	4	SS3_PROX	SS3_PROX:INTRON	OCRL	ENSG00000122126.18	ENST00000486673.1:ENST00000371113.9:ENST00000357121.5:ENST00000691455.1:ENST00000693473.1:ENST00000646010.1:ENST00000689093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.39782	4.6315100000000005	4.8652	0.00334699	4.11137e-4	0.0734189	0.0138446
chr20	36847314	36847414	9738262	0	-	0.43	(0.424,0.459]	chr20	964526	75	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	3.83155	4.631385	5.43122	1.07528e-5	1.07048e-12	5.78423e-4	1.84422e-10
chr1	155553665	155553765	777358	0	-	0.32	[0,0.32]	chr1	85749	317	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr10	74288090	74288190	5896088	0	+	0.32	[0,0.32]	chr10	529750	447	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr10	79685772	79685871	6180658	0	-	0.262626	[0,0.32]	chr10	553538	18	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr12	45898386	45898485	6892709	0	+	0.292929	[0,0.32]	chr12	628461	43	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr12	57362668	57362768	7181545	0	-	0.27	[0,0.32]	chr12	663018	213	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr12	104307182	104307280	7003008	0	+	0.27551	[0,0.32]	chr12	640192	21	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr13	35056429	35056529	7354742	0	+	0.29	[0,0.32]	chr13	679667	3	SS5_PROX	SS5_PROX:INTRON	NBEA	ENSG00000172915.20	ENST00000400445.8:ENST00000379939.7:ENST00000686320.1:ENST00000691351.1:ENST00000686972.1:ENST00000692628.1:ENST00000685717.1:ENST00000685025.1:ENST00000497540.2:ENST00000686647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr15	43863854	43863953	7960549	0	+	0.292929	[0,0.32]	chr15	736541	21	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000263795.11:ENST00000478130.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr17	47533848	47533948	8733343	0	+	0.32	[0,0.32]	chr17	829883	19	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr2	62714594	62714694	1048676	0	+	0.32	[0,0.32]	chr2	111806	69	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr2	173928075	173928175	1615735	0	-	0.31	[0,0.32]	chr2	167000	89	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr2	175126099	175126198	1622916	0	-	0.262626	[0,0.32]	chr2	167619	42	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr2	222874338	222874438	1319437	0	+	0.29	[0,0.32]	chr2	136501	84	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr3	179565749	179565848	2115087	0	+	0.313131	[0,0.32]	chr3	207026	22	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000491202.5:ENST00000429709.7:ENST00000494843.5:ENST00000490364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr5	37314097	37314197	3443372	0	-	0.26	[0,0.32]	chr5	316862	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr6	79041343	79041443	4107666	0	-	0.26	[0,0.32]	chr6	374435	148	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr6	135401266	135401365	4207369	0	-	0.30303	[0,0.32]	chr6	382709	60	INTRON	INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000680337.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5:ENST00000681945.1:ENST00000327035.10:ENST00000681477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr8	70197226	70197326	5188457	0	-	0.29	[0,0.32]	chr8	465105	220	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chrX	18979262	18979362	10287851	0	-	0.3	[0,0.32]	chrX	1023328	245	INTRON	INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.46657	4.631105	4.79564	0.00288167	5.01883e-4	0.0662445	0.0161742
chr15	43831063	43831163	7960208	0	+	0.48	(0.459,0.49]	chr15	736482	23	INTRON	INTRON	WDR76	ENSG00000092470.12	ENST00000381246.6:ENST00000452115.1:ENST00000263795.11	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.64423	4.629695	5.61516	6.20842e-4	9.49302e-8	0.0191195	8.06088e-6
chr1	62449552	62449648	173326	0	+	0.333333	(0.32,0.36]	chr1	19651	5	INTRON	INTRON	USP1	ENSG00000162607.13	ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.74773	4.62902	5.51031	2.41138e-6	5.24437e-7	1.53938e-4	3.8706e-5
chr15	51850630	51850730	7978102	0	+	0.43	(0.424,0.459]	chr15	738048	152	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000558455.1:ENST00000308580.12	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.80014	4.627825	5.45551	3.54639e-4	1.50668e-6	0.0120332	9.96778e-5
chr3	60000875	60000974	2301285	0	-	0.434343	(0.424,0.459]	chr3	225012	781	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.20361	4.6274999999999995	5.05139	4.27641e-5	1.79381e-5	0.00199812	9.13813e-4
chr12	50534924	50535024	6908547	0	+	0.49	(0.459,0.49]	chr12	629879	293	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.20634	4.627095000000001	5.04785	0.00276656	2.39418e-5	0.0641652	0.00119556
chr15	64467530	64467630	8004605	0	+	0.47	(0.459,0.49]	chr15	740236	63	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.20634	4.627095000000001	5.04785	0.00276656	2.39418e-5	0.0641652	0.00119556
chr17	62644087	62644187	8769407	0	+	0.46	(0.459,0.49]	chr17	834492	158	INTRON	INTRON	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000584265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.20634	4.627095000000001	5.04785	0.00276656	2.39418e-5	0.0641652	0.00119556
chr20	35717993	35718091	9735966	0	-	0.479592	(0.459,0.49]	chr20	964192	8	INTRON	INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000615771.5:ENST00000490484.7:ENST00000494274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.20634	4.627095000000001	5.04785	0.00276656	2.39418e-5	0.0641652	0.00119556
chr12	31494212	31494312	7135441	0	-	0.49	(0.459,0.49]	chr12	655371	136	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000546299.1:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr12	69497638	69497738	6948048	0	+	0.47	(0.459,0.49]	chr12	636220	56	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr12	119787059	119787159	7297509	0	-	0.48	(0.459,0.49]	chr12	673183	16	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000678686.1:ENST00000488203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr3	194406316	194406416	2521484	0	-	0.49	(0.459,0.49]	chr3	241378	2	SS3_PROX	SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr4	47904736	47904836	2891745	0	-	0.46	(0.459,0.49]	chr4	272168	1	SS5_PROX	SS5_PROX:INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000507131.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr5	143094811	143094911	3347641	0	+	0.49	(0.459,0.49]	chr5	307378	367	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000443674.5:ENST00000418236.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr5	177879929	177880026	3403259	0	+	0.484536	(0.459,0.49]	chr5	312510	7	INTRON	INTRON	ENSG00000170089	ENSG00000170089.16	ENST00000515065.6:ENST00000690558.1:ENST00000693614.1:ENST00000506082.5:ENST00000510692.5:ENST00000506672.5:ENST00000512851.5:ENST00000507037.5:ENST00000515525.5:ENST00000502601.5:ENST00000511074.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr6	24714740	24714840	4018907	0	-	0.48	(0.459,0.49]	chr6	363838	3	SS3_PROX	SS3_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.27284	4.626325	4.97981	0.00227779	3.36273e-5	0.0552099	0.00159406
chr14	58521684	58521780	7635724	0	+	0.375	(0.36,0.392]	chr14	702918	9	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	KIAA0586:HNRNPCP1	ENSG00000100578.18:ENSG00000258900.1	ENST00000354386.10:ENST00000619416.4:ENST00000619722.5:ENST00000423743.7:ENST00000650904.1:ENST00000652326.2:ENST00000650845.1:ENST00000651937.1:ENST00000261244.9:ENST00000538571.6:ENST00000651759.1:ENST00000651852.1:ENST00000555397.1:ENST00000556181.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	11	58	2	4.32095	4.625825	4.9307	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	20282846	20282946	1390883	0	-	0.34	(0.32,0.36]	chr2	144216	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	4.51391	4.625635	4.73736	5.18532e-7	4.00732e-8	3.83329e-5	3.64474e-6
chr19	49086661	49086761	9373119	0	+	0.53	(0.526,0.57]	chr19	912681	1	SS5_PROX	SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	3.4704	4.62458	5.77876	4.12702e-5	9.84906e-9	0.00192437	1.00136e-6
chr12	112409605	112409635	7285478	0	-	0.5	(0.49,0.526]	chr12	671909	1	EXON_MRNA	EXON_MRNA:INTRON	RPL6	ENSG00000089009.16	ENST00000546368.2:ENST00000550238.1:ENST00000551291.6:ENST00000549562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	4.13201	4.62407	5.11613	1.03252e-5	8.48086e-6	5.57702e-4	4.76746e-4
chr22	30969818	30969916	9929456	0	+	0.704082	(0.629,1]	chr22	986219	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	122	2	3.87622	4.62318	5.37014	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	105379708	105379807	1535772	0	-	0.545455	(0.526,0.57]	chr2	159544	12	INTRON	INTRON	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5:ENST00000452732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	114	2	4.35502	4.62209	4.88916	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	139088594	139088694	3013960	0	-	0.43	(0.424,0.459]	chr4	282110	42	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	4.35302	4.6218	4.89058	2.54851e-8	8.77883e-9	2.42771e-6	9.05568e-7
chr12	49144572	49144672	6901553	0	+	0.46	(0.459,0.49]	chr12	629020	124	INTRON	INTRON	ENSG00000258017	ENSG00000258017.3	ENST00000656133.1:ENST00000665211.1:ENST00000547712.1:ENST00000664160.1:ENST00000551496.1	lncRNA	lncRNA	lncRNA	lncRNA	1	18	2	3.39129	4.62146	5.85163	0.00244536	5.06515e-9	0.0587626	5.39084e-7
chr16	30863113	30863213	8546516	0	-	0.49	(0.459,0.49]	chr16	804552	104	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.39129	4.62146	5.85163	0.00244536	5.06515e-9	0.0587626	5.39084e-7
chr18	36006994	36007094	9211828	0	-	0.36	(0.32,0.36]	chr18	887226	133	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	13	65	2	4.21637	4.620665000000001	5.02496	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	103620979	103621078	6245030	0	-	0.484848	(0.459,0.49]	chr10	559165	33	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000420222.2:ENST00000691105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	4.29277	4.619705	4.94664	1.1232e-8	8.34335e-10	1.13018e-6	9.96447e-8
chr2	55024286	55024385	1449166	0	-	0.424242	(0.392,0.424]	chr2	150262	140	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.40795	4.619685	5.83142	5.07532e-4	3.48252e-8	0.0162102	3.23132e-6
chr22	28754182	28754282	9919205	0	+	0.35	(0.32,0.36]	chr22	985213	25	INTRON	INTRON	HSCB	ENSG00000100209.11	ENST00000216027.8:ENST00000450178.5:ENST00000398941.6:ENST00000420442.5:ENST00000483861.5:ENST00000495977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	3.08717	4.619	6.15083	0.00535148	1.52443e-9	0.100211	1.74447e-7
chr2	144516515	144516553	1578311	0	-	0.526316	(0.526,0.57]	chr2	163346	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000637591.2:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000629955.1:ENST00000465070.5:ENST00000636445.1:ENST00000629520.2:ENST00000470879.5:ENST00000462355.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.97495	4.6174100000000005	5.25987	3.21576e-5	2.82947e-6	0.00156852	1.75466e-4
chr7	77563735	77563835	4440985	0	+	0.39	(0.36,0.392]	chr7	399534	4	SS3_PROX	SS3_PROX:INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	4.4918	4.615539999999999	4.73928	4.36875e-6	5.12952e-7	2.58808e-4	3.78931e-5
chr9	100180136	100180236	5450828	0	+	0.38	(0.36,0.392]	chr9	486785	478	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	4.2635	4.61534	4.96718	1.24104e-4	4.58367e-7	0.0049353	3.4135e-5
chr15	28606974	28607074	7931776	0	+	0.55	(0.526,0.57]	chr15	732280	63	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	18	2	3.88187	4.614635	5.3474	8.23795e-5	1.05485e-6	0.00351856	7.33447e-5
chr14	45198068	45198164	7614545	0	+	0.375	(0.36,0.392]	chr14	700582	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696649.1:ENST00000696648.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1:ENST00000554809.6:ENST00000696659.1:ENST00000696686.1:ENST00000696665.1:ENST00000557110.2:ENST00000555484.2:ENST00000696645.1:ENST00000696651.1:ENST00000553551.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	4.57244	4.614585	4.65673	7.48315e-4	2.92322e-6	0.0220209	1.80583e-4
chr16	24775433	24775533	8357661	0	+	0.4	(0.392,0.424]	chr16	779122	167	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	4.05097	4.614535	5.1781	2.48959e-5	1.60652e-6	0.00122627	1.08441e-4
chr9	121147415	121147511	5477447	0	+	0.385417	(0.36,0.392]	chr9	489456	13	EXON_MRNA	EXON_MRNA:INTRON	CNTRL	ENSG00000119397.19	ENST00000691066.1:ENST00000373855.7:ENST00000689134.1:ENST00000687169.1:ENST00000373847.6:ENST00000688832.1:ENST00000373851.6:ENST00000373850.6:ENST00000692226.1:ENST00000687076.1:ENST00000692485.1:ENST00000685839.1:ENST00000686219.1:ENST00000431571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.59992	4.613885	5.62785	0.00266188	5.69775e-7	0.0631592	4.16055e-5
chr2	11303824	11303924	1381528	0	-	0.33	(0.32,0.36]	chr2	143172	157	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	4.08054	4.61337	5.1462	1.61702e-7	2.68825e-9	1.33079e-5	2.98355e-7
chr1	16153454	16153554	522890	0	-	0.63	(0.629,1]	chr1	56591	21	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8:ENST00000461614.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.39444	4.61323	4.83202	6.41849e-4	4.13761e-5	0.0196462	0.00192437
chr8	143321886	143321980	5304275	0	-	0.638298	(0.629,1]	chr8	473586	1	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.39444	4.61323	4.83202	6.41849e-4	4.13761e-5	0.0196462	0.00192437
chr1	114510050	114510150	731365	0	-	0.49	(0.459,0.49]	chr1	78341	1	SS5_PROX	SS5_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	4.47246	4.612705	4.75295	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	13414659	13414759	2181474	0	-	0.6	(0.57,0.629]	chr3	213011	144	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	4.39204	4.61219	4.83234	2.55068e-7	9.24905e-10	2.02856e-5	1.09461e-7
chr15	38263386	38263486	7944789	0	+	0.34	(0.32,0.36]	chr15	733659	98	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	3.10453	4.611745	6.11896	8.28985e-4	4.65151e-9	0.024032	4.96782e-7
chr12	89673403	89673503	7231822	0	-	0.35	(0.32,0.36]	chr12	666826	169	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000551310.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.49493	4.610715	4.7265	6.12159e-4	1.01106e-5	0.0189985	5.51435e-4
chr3	140962826	140962926	2030717	0	+	0.37	(0.36,0.392]	chr3	202878	3	SS3_PROX	SS3_PROX:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.52068	4.61071	5.70074	0.00324516	3.77982e-7	0.0730386	2.84782e-5
chr5	14589322	14589421	3125757	0	+	0.50505	(0.49,0.526]	chr5	289528	70	INTRON	INTRON	OTULINL	ENSG00000145569.6	ENST00000274217.4	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	4.17956	4.610670000000001	5.04178	1.57703e-5	8.31535e-11	8.20905e-4	1.13093e-8
chr8	8364274	8364374	5107956	0	-	0.39	(0.36,0.392]	chr8	457971	243	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.4918	4.610004999999999	4.72821	6.09158e-4	4.36875e-6	0.0188826	2.58808e-4
chr11	43721039	43721139	6380805	0	+	0.36	(0.32,0.36]	chr11	571581	393	INTRON	INTRON	HSD17B12	ENSG00000149084.13	ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.70951	4.609909999999999	5.51031	0.00201951	2.41138e-6	0.0510613	1.53938e-4
chr5	59142378	59142478	3473652	0	-	0.33	(0.32,0.36]	chr5	319179	509	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.70951	4.609909999999999	5.51031	0.00201951	2.41138e-6	0.0510613	1.53938e-4
chr7	5600269	5600368	4299733	0	+	0.585859	(0.57,0.629]	chr7	389501	50	INTRON	INTRON	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	4.46827	4.609705	4.75114	5.2773e-4	3.21203e-9	0.0167673	3.53004e-7
chr15	51912267	51912366	7978732	0	+	0.545455	(0.526,0.57]	chr15	738109	36	UTR3	UTR3:EXON_MRNA:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	4.12302	4.608835	5.09465	1.16684e-5	8.93019e-6	6.16746e-4	4.98528e-4
chr8	109302345	109302444	5248853	0	-	0.494949	(0.49,0.526]	chr8	469356	54	INTRON	INTRON	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000678094.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1:ENST00000677737.1:ENST00000521439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	4.50237	4.60863	4.71489	1.81396e-4	1.72026e-7	0.0069054	1.41598e-5
chr1	28697979	28698078	90667	0	+	0.575758	(0.57,0.629]	chr1	9939	5	INTRON	INTRON	GMEB1	ENSG00000162419.13	ENST00000361872.8:ENST00000294409.2:ENST00000373816.6:ENST00000480454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr11	468914	469014	6292542	0	+	0.59	(0.57,0.629]	chr11	563546	80	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr12	7139216	7139316	6815209	0	+	0.59	(0.57,0.629]	chr12	622901	4	SS5_PROX	SS5_PROX:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000544584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr16	4929401	4929501	8504939	0	-	0.59	(0.57,0.629]	chr16	797764	181	INTRON	INTRON	PPL	ENSG00000118898.16	ENST00000345988.7:ENST00000590782.6:ENST00000592772.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr19	49338578	49338678	9524690	0	-	0.59	(0.57,0.629]	chr19	940905	59	INTRON	INTRON	ENSG00000197813	ENSG00000197813.6	ENST00000358234.5:ENST00000602554.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr2	96922432	96922525	1515709	0	-	0.580645	(0.57,0.629]	chr2	157794	4	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000490605.3:ENST00000478671.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.46827	4.6083	4.74833	5.2773e-4	1.07277e-4	0.0167673	0.00442346
chr1	225845337	225845436	869905	0	-	0.616162	(0.57,0.629]	chr1	96802	38	INTRON	INTRON	ENSG00000242861	ENSG00000242861.1	ENST00000424332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.53486	4.608090000000001	4.68132	3.95206e-4	1.50304e-4	0.0135724	0.00577248
chr15	31719868	31719968	8119264	0	-	0.6	(0.57,0.629]	chr15	751207	300	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.53486	4.608090000000001	4.68132	3.95206e-4	1.50304e-4	0.0135724	0.00577248
chr6	30325908	30326008	4033194	0	-	0.61	(0.57,0.629]	chr6	365129	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HCG17:HCG18	ENSG00000270604.5:ENSG00000231074.10	ENST00000453558.1:ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.53486	4.608090000000001	4.68132	3.95206e-4	1.50304e-4	0.0135724	0.00577248
chr1	165838815	165838915	326615	0	+	0.48	(0.459,0.49]	chr1	36725	105	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.88247	4.607325	5.33218	0.0104144	1.78412e-6	0.170122	1.1709e-4
chr1	230922290	230922385	881379	0	-	0.484211	(0.459,0.49]	chr1	98254	4	INTRON	INTRON	TTC13	ENSG00000143643.13	ENST00000366661.9:ENST00000366662.8:ENST00000486879.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.88247	4.607325	5.33218	0.0104144	1.78412e-6	0.170122	1.1709e-4
chr17	49659265	49659365	8961390	0	-	0.47	(0.459,0.49]	chr17	862118	118	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.88247	4.607325	5.33218	0.0104144	1.78412e-6	0.170122	1.1709e-4
chr4	39721847	39721946	2607703	0	+	0.464646	(0.459,0.49]	chr4	249765	231	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	4.04656	4.6066400000000005	5.16672	3.80472e-5	7.74288e-6	0.00181622	4.39068e-4
chr5	176453802	176453902	3398281	0	+	0.51	(0.49,0.526]	chr5	311799	1	SS5_PROX	SS5_PROX:INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.72059	4.6049050000000005	5.48922	2.73826e-4	2.5213e-7	0.00975361	2.01203e-5
chr3	183869058	183869158	2507285	0	-	0.38	(0.36,0.392]	chr3	239962	6	INTRON	INTRON	PARL	ENSG00000175193.14	ENST00000639100.1:ENST00000317096.9:ENST00000638817.1:ENST00000311101.9:ENST00000435888.5:ENST00000639900.1:ENST00000421484.5:ENST00000449306.1:ENST00000469056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	4.03087	4.60489	5.17891	3.77193e-6	1e-12	2.29843e-4	1.72912e-10
chr3	177042070	177042169	2498427	0	-	0.353535	(0.32,0.36]	chr3	239151	10	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	4.38184	4.604835	4.82783	4.57616e-4	1.66191e-5	0.0150584	8.55383e-4
chr7	144363754	144363852	4575487	0	+	0.622449	(0.57,0.629]	chr7	411409	11	CDS	CDS:EXON_MRNA:INTRON	ARHGEF5	ENSG00000050327.15	ENST00000498580.5:ENST00000056217.10	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	3.55646	4.6046949999999995	5.65293	3.507e-7	2.31977e-8	2.66915e-5	2.19827e-6
chr14	35739732	35739829	7807525	0	-	0.42268	(0.392,0.424]	chr14	718863	7	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5:ENST00000557069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	3.69229	4.60405	5.51581	3.72291e-6	1.07176e-6	2.27625e-4	7.36955e-5
chr3	45719499	45719550	1860377	0	+	0.27451	[0,0.32]	chr3	188217	1	CDS	CDS:UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000463659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	3.05093	4.604025	6.15712	0.00583312	3.56277e-9	0.107081	3.88104e-7
chr19	41864263	41864354	9353363	0	+	0.527473	(0.526,0.57]	chr19	909152	2	UTR3	UTR3:EXON_MRNA:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	3.32233	4.60306	5.88379	1.36681e-4	2.39626e-9	0.00539233	2.67554e-7
chr3	193639864	193639964	2144888	0	+	0.4	(0.392,0.424]	chr3	210132	14	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000497189.5:ENST00000475899.1:ENST00000646544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	4.30978	4.6015250000000005	4.89327	7.17587e-8	3.77123e-8	6.27925e-6	3.4456e-6
chr1	119980912	119981011	739812	0	-	0.444444	(0.424,0.459]	chr1	79406	42	INTRON	INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7:ENST00000479412.2:ENST00000640021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr13	41866910	41867003	7504476	0	-	0.430108	(0.424,0.459]	chr13	690614	5	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6:ENST00000379302.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr13	114320012	114320112	7456854	0	+	0.44	(0.424,0.459]	chr13	687010	50	INTRON	INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000463003.2:ENST00000645174.1:ENST00000361283.4:ENST00000646155.1:ENST00000478022.3:ENST00000644294.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr14	99504824	99504921	7746063	0	+	0.443299	(0.424,0.459]	chr14	711141	8	INTRON	INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr15	48158845	48158922	8152320	0	-	0.428571	(0.424,0.459]	chr15	755687	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYEF2	ENSG00000104177.19	ENST00000324324.12:ENST00000267836.10:ENST00000616409.4:ENST00000558395.1:ENST00000561301.5:ENST00000561351.5:ENST00000557868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr15	63781551	63781651	8211162	0	-	0.44	(0.424,0.459]	chr15	761480	6	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr17	44440997	44441096	8942394	0	-	0.434343	(0.424,0.459]	chr17	859978	19	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr2	186179789	186179889	1642104	0	-	0.45	(0.424,0.459]	chr2	168903	7	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr4	26977201	26977301	2593966	0	+	0.43	(0.424,0.459]	chr4	248819	191	INTRON	INTRON	STIM2	ENSG00000109689.19	ENST00000477474.3:ENST00000494628.6:ENST00000463501.5:ENST00000467011.6:ENST00000467087.7:ENST00000465503.6:ENST00000478049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr4	77906145	77906245	2657163	0	+	0.43	(0.424,0.459]	chr4	253699	115	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000506674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr5	77097267	77097366	3223297	0	+	0.454545	(0.424,0.459]	chr5	297825	44	INTRON	INTRON	ZBED3-AS1	ENSG00000250802.7	ENST00000643365.1:ENST00000645183.1:ENST00000647364.1:ENST00000645374.1:ENST00000643848.1:ENST00000645459.1:ENST00000643603.1:ENST00000643269.1:ENST00000503969.6:ENST00000647045.1:ENST00000514905.5:ENST00000515419.5:ENST00000502433.5:ENST00000512213.5:ENST00000644131.1:ENST00000645136.1:ENST00000645509.1:ENST00000642217.1:ENST00000643974.1:ENST00000512001.6:ENST00000646603.1:ENST00000644460.1:ENST00000643894.1:ENST00000514640.5:ENST00000514114.5:ENST00000646307.1:ENST00000642277.1:ENST00000646594.1:ENST00000646705.1:ENST00000646953.1:ENST00000513591.5:ENST00000514288.5:ENST00000504506.5:ENST00000644015.1:ENST00000643465.1:ENST00000642398.1:ENST00000507749.5:ENST00000644426.1:ENST00000645070.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr5	140656959	140657053	3338157	0	+	0.457447	(0.424,0.459]	chr5	306571	6	INTRON	INTRON	IK	ENSG00000113141.19	ENST00000417647.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.40599	4.60151	4.79703	0.00154565	2.28148e-4	0.0389999	0.00827964
chr10	45919869	45919969	6121881	0	-	0.28	[0,0.32]	chr10	548364	33	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	13	2	3.36243	4.601335	5.84024	0.00121149	1.72569e-7	0.0321344	1.40017e-5
chr12	56008134	56008234	6920115	0	+	0.47	(0.459,0.49]	chr12	632026	4	SS5_PROX	SS5_PROX:INTRON	IKZF4	ENSG00000123411.15	ENST00000262032.9:ENST00000548601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	4.40206	4.601295	4.80053	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	31489139	31489238	6587273	0	-	0.444444	(0.424,0.459]	chr11	599106	5	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr12	12365148	12365247	6823358	0	+	0.454545	(0.424,0.459]	chr12	623883	34	INTRON	INTRON	BORCS5	ENSG00000165714.11	ENST00000314565.9:ENST00000542728.5:ENST00000543990.1:ENST00000298571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr12	26043479	26043579	6848819	0	+	0.44	(0.424,0.459]	chr12	625667	216	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5:ENST00000542004.5:ENST00000542315.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr14	95166414	95166514	7741891	0	+	0.45	(0.424,0.459]	chr14	710716	70	INTRON	INTRON	DICER1-AS1	ENSG00000235706.9	ENST00000554631.2:ENST00000692703.1:ENST00000671073.1:ENST00000435343.2:ENST00000439819.6:ENST00000654147.2:ENST00000693197.1:ENST00000661445.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr15	82238921	82239021	8258932	0	-	0.45	(0.424,0.459]	chr15	766653	4	SS3_PROX	SS3_PROX:INTRON	EFL1	ENSG00000140598.16	ENST00000359445.8:ENST00000696330.1:ENST00000268206.12:ENST00000696336.1:ENST00000650113.1:ENST00000561389.2:ENST00000696337.1:ENST00000557939.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr16	56778570	56778670	8397082	0	+	0.45	(0.424,0.459]	chr16	784781	196	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr17	4253619	4253719	8850897	0	-	0.43	(0.424,0.459]	chr17	845699	108	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr19	45716425	45716520	9513416	0	-	0.431579	(0.424,0.459]	chr19	938461	13	EXON_MRNA	EXON_MRNA:INTRON	FBXO46:ENSG00000279407	ENSG00000177051.6:ENSG00000279407.1	ENST00000317683.4:ENST00000586899.1:ENST00000623179.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr19	47180603	47180703	9368471	0	+	0.45	(0.424,0.459]	chr19	911777	3	SS5_PROX	SS5_PROX:INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr2	65335173	65335273	1472455	0	-	0.45	(0.424,0.459]	chr2	152434	4	SS3_PROX	SS3_PROX:INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000426832.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr2	189702832	189702931	1237104	0	+	0.444444	(0.424,0.459]	chr2	129871	61	INTRON	INTRON	ANKAR	ENSG00000151687.15	ENST00000441800.5:ENST00000684021.1:ENST00000433782.6:ENST00000520309.5:ENST00000313581.4:ENST00000464687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr5	138535051	138535150	3615022	0	-	0.454545	(0.424,0.459]	chr5	328308	50	INTRON	INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr6	135955121	135955221	3890864	0	+	0.43	(0.424,0.459]	chr6	355496	72	INTRON	INTRON	PDE7B	ENSG00000171408.14	ENST00000308191.11	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr8	125100117	125100217	5085073	0	+	0.44	(0.424,0.459]	chr8	455086	52	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr9	14221096	14221196	5575751	0	-	0.44	(0.424,0.459]	chr9	500103	404	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr9	130699590	130699688	5514973	0	+	0.438776	(0.424,0.459]	chr9	495025	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EXOSC2	ENSG00000130713.17	ENST00000491115.7:ENST00000686102.1:ENST00000691284.1:ENST00000685137.1:ENST00000495699.3:ENST00000688967.1:ENST00000691104.1:ENST00000691926.1:ENST00000693435.1:ENST00000688258.1:ENST00000372358.10:ENST00000546165.6:ENST00000372352.7:ENST00000687420.1:ENST00000693011.1:ENST00000687051.1:ENST00000691425.1:ENST00000693610.1:ENST00000490641.5:ENST00000692794.1:ENST00000689890.1:ENST00000688350.1:ENST00000686106.1:ENST00000372351.7:ENST00000372350.7:ENST00000685277.1:ENST00000463488.1:ENST00000688364.1:ENST00000689662.1:ENST00000430138.7:ENST00000691956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.48802	4.6011299999999995	4.71424	0.00121831	3.07139e-4	0.0326347	0.0105767
chr1	50591754	50591853	610862	0	-	0.393939	(0.392,0.424]	chr1	68234	66	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	41	2	4.09143	4.60069	5.10995	1.45195e-8	1e-12	1.44044e-6	1.72912e-10
chr7	26802353	26802453	4662824	0	-	0.51	(0.49,0.526]	chr7	418885	553	INTRON	INTRON	SKAP2	ENSG00000005020.13	ENST00000345317.7:ENST00000468712.5:ENST00000495802.5:ENST00000432747.1:ENST00000490456.6:ENST00000497511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.08493	4.60053	5.11613	0.00395081	1.03252e-5	0.0816719	5.57702e-4
chr7	92704028	92704128	4774586	0	-	0.5	(0.49,0.526]	chr7	427584	321	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.08493	4.60053	5.11613	0.00395081	1.03252e-5	0.0816719	5.57702e-4
chr12	48346551	48346648	7157763	0	-	0.381443	(0.36,0.392]	chr12	657559	7	INTRON	INTRON	ZNF641	ENSG00000167528.13	ENST00000547026.6:ENST00000544117.6:ENST00000301042.7:ENST00000448928.7:ENST00000549125.5:ENST00000548932.5:ENST00000550181.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	4.18028	4.600054999999999	5.01983	7.51712e-7	3.09874e-12	5.41481e-5	5.0565e-10
chr1	154166849	154166948	770279	0	-	0.515152	(0.49,0.526]	chr1	84522	52	UTR3	UTR3:EXON_MRNA:INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000513769.5:ENST00000302206.9:ENST00000368531.6:ENST00000323144.12:ENST00000651641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.15714	4.5994600000000005	5.04178	0.00319561	1.57703e-5	0.0699484	8.20905e-4
chr17	29753350	29753450	8904490	0	-	0.51	(0.49,0.526]	chr17	853473	499	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.15714	4.5994600000000005	5.04178	0.00319561	1.57703e-5	0.0699484	8.20905e-4
chr2	130373320	130373416	1142271	0	+	0.510417	(0.49,0.526]	chr2	122507	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PTPN18	ENSG00000072135.13	ENST00000347849.7:ENST00000175756.10:ENST00000409022.2:ENST00000481492.1:ENST00000462321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.15714	4.5994600000000005	5.04178	0.00319561	1.57703e-5	0.0699484	8.20905e-4
chr8	67052537	67052636	5185479	0	-	0.50505	(0.49,0.526]	chr8	464712	8	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.15714	4.5994600000000005	5.04178	0.00319561	1.57703e-5	0.0699484	8.20905e-4
chr9	20914629	20914727	5361950	0	+	0.510204	(0.49,0.526]	chr9	478502	13	INTRON	INTRON	FOCAD	ENSG00000188352.13	ENST00000380249.5:ENST00000338382.11:ENST00000605086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.15714	4.5994600000000005	5.04178	0.00319561	1.57703e-5	0.0699484	8.20905e-4
chr12	6996824	6996924	6814166	0	+	0.48	(0.459,0.49]	chr12	622710	2	SS3_PROX	SS3_PROX:INTRON	EMG1:C1S	ENSG00000126749.16:ENSG00000182326.16	ENST00000607161.5:ENST00000406697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	3.71812	4.59936	5.4806	1.07121e-5	4.11395e-7	5.77005e-4	3.09732e-5
chr14	45134016	45134093	7816375	0	-	0.571429	(0.57,0.629]	chr14	719365	2	SS5_PROX	SS5_PROX:INTRON	FKBP3	ENSG00000100442.11	ENST00000396062.4:ENST00000216330.7:ENST00000557324.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	4.28733	4.598275	4.90922	8.34421e-7	2.65774e-10	5.98026e-5	3.37369e-8
chr5	59283613	59283713	3475080	0	-	0.5	(0.49,0.526]	chr5	319239	76	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	3.70699	4.598105	5.48922	6.7032e-6	2.5213e-7	3.89775e-4	2.01203e-5
chr17	40140648	40140713	8713630	0	+	0.753846	(0.629,1]	chr17	826345	1	CDS	CDS:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000583649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	104	2	4.20274	4.59799	4.99324	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	134460442	134460535	10228278	0	+	0.72043	(0.629,1]	chrX	1018489	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.94001	4.59776	5.25551	7.28993e-6	1.19594e-6	4.19849e-4	8.2089e-5
chr20	33682112	33682212	9727135	0	-	0.45	(0.424,0.459]	chr20	962945	13	INTRON	INTRON	E2F1	ENSG00000101412.13	ENST00000343380.6	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	4.45728	4.596254999999999	4.73523	2.77305e-9	5.26214e-11	3.07081e-7	7.33664e-9
chr1	197729025	197729125	832118	0	-	0.39	(0.36,0.392]	chr1	92286	136	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000294738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	4.30331	4.59606	4.88881	2.34074e-5	8.92448e-8	0.00116109	7.65609e-6
chr2	99162618	99162718	1522751	0	-	0.39	(0.36,0.392]	chr2	158574	4	SS3_PROX	SS3_PROX:INTRON	MITD1	ENSG00000158411.11	ENST00000487588.5:ENST00000422537.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.30331	4.59606	4.88881	2.34074e-5	8.92448e-8	0.00116109	7.65609e-6
chr7	111315086	111315186	4816853	0	-	0.38	(0.36,0.392]	chr7	431926	3512	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.30331	4.59606	4.88881	2.34074e-5	8.92448e-8	0.00116109	7.65609e-6
chr2	135077066	135077166	1151745	0	+	0.49	(0.459,0.49]	chr2	123045	144	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	4.21222	4.5960149999999995	4.97981	3.36273e-5	9.25181e-6	0.00159406	5.14007e-4
chr11	94797519	94797616	6469757	0	+	0.474227	(0.459,0.49]	chr11	584777	20	INTRON	INTRON	AMOTL1	ENSG00000166025.18	ENST00000299004.13:ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.85937	4.595775	5.33218	1.54766e-4	1.78412e-6	0.00599593	1.1709e-4
chr4	52713309	52713370	2619142	0	+	0.47541	(0.459,0.49]	chr4	251031	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:SNORA26	ENSG00000226950.8:ENSG00000212588.1	ENST00000411630.7:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000675191.1:ENST00000653147.1:ENST00000391286.1	snoRNA	snoRNA	snoRNA:lncRNA	snoRNA:lncRNA	1	16	2	3.85937	4.595775	5.33218	1.54766e-4	1.78412e-6	0.00599593	1.1709e-4
chr7	12216887	12216984	4311109	0	+	0.43299	(0.424,0.459]	chr7	390522	7	INTRON	INTRON	TMEM106B	ENSG00000106460.19	ENST00000420833.5:ENST00000396668.8:ENST00000444443.5:ENST00000396667.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	4.20361	4.59512	4.98663	1.79381e-5	4.11938e-9	9.13813e-4	4.43187e-7
chr11	76485625	76485725	6451260	0	+	0.43	(0.424,0.459]	chr11	582774	124	INTRON	INTRON	EMSY	ENSG00000158636.17	ENST00000427574.6:ENST00000695367.1:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	3.73279	4.59415	5.45551	1.78903e-5	1.50668e-6	9.13813e-4	9.96778e-5
chr11	68548204	68548304	6429377	0	+	0.55	(0.526,0.57]	chr11	580024	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5:ENST00000531244.1:ENST00000529172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.40949	4.594125	5.77876	0.00141136	9.84906e-9	0.0368074	1.00136e-6
chr1	21157272	21157372	537569	0	-	0.37	(0.36,0.392]	chr1	59083	443	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.67571	4.59388	5.51205	9.00428e-5	2.39077e-6	0.00381913	1.5204e-4
chr15	30936320	30936419	7933712	0	+	0.525253	(0.49,0.526]	chr15	732622	53	INTRON	INTRON	FAN1	ENSG00000198690.10	ENST00000667837.1:ENST00000656435.1:ENST00000654056.1:ENST00000657391.1:ENST00000670849.1:ENST00000655421.1:ENST00000664070.1:ENST00000664837.1:ENST00000670074.1:ENST00000565280.5:ENST00000656307.1:ENST00000362065.9:ENST00000661974.1:ENST00000562881.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	4.14629	4.593755	5.04122	3.79367e-8	6.36415e-11	3.46316e-6	8.81514e-9
chr1	171562192	171562291	340866	0	+	0.414141	(0.392,0.424]	chr1	38111	7	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	3.83608	4.593500000000001	5.35092	2.9067e-8	1.74707e-11	2.74698e-6	2.60849e-9
chr4	55114025	55114125	2905864	0	-	0.42	(0.392,0.424]	chr4	273223	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDR	ENSG00000128052.10	ENST00000263923.5:ENST00000647068.1:ENST00000512566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	96	2	4.38758	4.590595	4.79361	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	28131017	28131112	4958746	0	+	0.463158	(0.459,0.49]	chr8	444339	10	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5:ENST00000520011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	3.77994	4.590315	5.40069	2.14818e-4	1.15324e-6	0.00789628	7.95154e-5
chr2	112171336	112171435	1123593	0	+	0.616162	(0.57,0.629]	chr2	120204	58	INTRON	INTRON	FBLN7	ENSG00000144152.13	ENST00000331203.7:ENST00000409903.5:ENST00000409450.7:ENST00000409667.7:ENST00000472377.1:ENST00000441565.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	4.00133	4.5901250000000005	5.17892	1.78261e-5	3.48382e-6	9.13271e-4	2.13641e-4
chr21	37444760	37444859	9813699	0	+	0.434343	(0.424,0.459]	chr21	972944	140	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	4.46516	4.589700000000001	4.71424	3.07139e-4	2.35249e-6	0.0105767	1.51159e-4
chr5	1624688	1624788	3414944	0	-	0.55	(0.526,0.57]	chr5	314328	216	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	18	2	4.32974	4.58884	4.84794	6.50622e-5	1.55497e-6	0.00284455	1.02493e-4
chr17	43286853	43286953	8938330	0	-	0.49	(0.459,0.49]	chr17	859071	567	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	14	108	2	4.38437	4.58873	4.79309	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	120531208	120531303	5713627	0	-	0.547368	(0.526,0.57]	chr9	512231	7	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1:ENST00000693702.1:ENST00000481266.2:ENST00000482047.1:ENST00000472883.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.69524	4.5884599999999995	5.48168	3.03531e-4	2.6732e-7	0.0107298	2.09843e-5
chr17	43292952	43293052	8938391	0	-	0.51	(0.49,0.526]	chr17	859071	628	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	176	2	4.21226	4.588089999999999	4.96392	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	73624338	73624438	6166825	0	-	0.56	(0.526,0.57]	chr10	552281	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000433394.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr11	129994732	129994832	6780233	0	-	0.55	(0.526,0.57]	chr11	619023	333	INTRON	INTRON	PRDM10	ENSG00000170325.16	ENST00000358825.9:ENST00000360871.8:ENST00000528746.5:ENST00000527581.5:ENST00000531431.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr12	49500505	49500605	6904286	0	+	0.55	(0.526,0.57]	chr12	629210	3	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr12	54306061	54306161	6916500	0	+	0.53	(0.526,0.57]	chr12	631348	43	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr16	11621739	11621839	8509100	0	-	0.53	(0.526,0.57]	chr16	798388	234	INTRON	INTRON	LITAF	ENSG00000189067.14	ENST00000576036.5:ENST00000574848.5:ENST00000576334.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr17	43116669	43116766	8937059	0	-	0.536082	(0.526,0.57]	chr17	858970	5	INTRON	INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr3	31939571	31939670	2225877	0	-	0.545455	(0.526,0.57]	chr3	215389	202	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr3	155942932	155943031	2047766	0	+	0.545455	(0.526,0.57]	chr3	204618	54	UTR3	UTR3:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.07767	4.58616	5.09465	0.00403601	1.16684e-5	0.0817225	6.16746e-4
chr4	56097404	56097504	2624544	0	+	0.54	(0.526,0.57]	chr4	251814	470	INTRON	INTRON	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000629263.3:ENST00000636006.1:ENST00000646253.1	protein_coding	protein_coding	protein_coding	protein_coding	12	105	2	4.17951	4.58566	4.99181	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	136645770	136645870	2447671	0	-	0.45	(0.424,0.459]	chr3	234921	144	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	4.20361	4.5854800000000004	4.96735	1.79381e-5	1e-12	9.13813e-4	1.72912e-10
chr17	44422649	44422749	8942206	0	-	0.53	(0.526,0.57]	chr17	859954	150	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.13626	4.585285	5.03431	0.00339748	1.64566e-5	0.0728314	8.48927e-4
chr2	112283601	112283701	1123874	0	+	0.29	[0,0.32]	chr2	120240	72	INTRON	INTRON	ZC3H6	ENSG00000188177.14	ENST00000409871.6:ENST00000343936.4	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.06239	4.58477	5.10715	3.10398e-4	7.53496e-5	0.0109114	0.00322158
chr4	73246287	73246387	2917022	0	-	0.34	(0.32,0.36]	chr4	274542	233	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.90902	4.584614999999999	5.26021	5.03152e-4	1.14222e-9	0.0161742	1.33948e-7
chr10	87314571	87314671	6194228	0	-	0.45	(0.424,0.459]	chr10	554192	61	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	3.5463	4.58404	5.62178	0.00153741	2.83203e-7	0.0389999	2.17914e-5
chr7	6196027	6196127	4620550	0	-	0.45	(0.424,0.459]	chr7	416332	51	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000482460.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.5463	4.58404	5.62178	0.00153741	2.83203e-7	0.0389999	2.17914e-5
chr2	186508542	186508554	1231130	0	+	0.083333	[0,0.32]	chr2	129136	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000498757.1:ENST00000445547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	47	2	4.38552	4.5838	4.78208	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	113939583	113939682	266532	0	+	0.353535	(0.32,0.36]	chr1	27411	60	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000514621.5:ENST00000503968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.02125	4.583725	5.1462	3.53532e-4	2.68825e-9	0.0122629	2.98355e-7
chr5	60920171	60920269	3489001	0	-	0.326531	(0.32,0.36]	chr5	319516	14	INTRON	INTRON	ERCC8	ENSG00000049167.16	ENST00000676185.1:ENST00000682217.1:ENST00000675042.2:ENST00000381118.7:ENST00000675378.1:ENST00000643034.1:ENST00000647431.2:ENST00000682375.1:ENST00000439176.6:ENST00000683052.1:ENST00000643708.1:ENST00000265038.10:ENST00000675452.2:ENST00000683460.1:ENST00000684621.1:ENST00000684453.1:ENST00000683199.1:ENST00000647486.2:ENST00000682246.1:ENST00000684394.1:ENST00000497892.6:ENST00000675229.1:ENST00000675920.1:ENST00000682418.1:ENST00000682750.1:ENST00000682380.1:ENST00000477893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	4.02125	4.583725	5.1462	3.53532e-4	2.68825e-9	0.0122629	2.98355e-7
chr6	147303483	147303583	3914393	0	+	0.4	(0.392,0.424]	chr6	357142	102	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	4.44783	4.58367	4.71951	1.28627e-10	6.6179e-11	1.72632e-8	9.13193e-9
chr15	40694507	40694603	8136483	0	-	0.552083	(0.526,0.57]	chr15	752787	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAD51-AS1	ENSG00000245849.8	ENST00000526635.2:ENST00000650326.1:ENST00000533146.5:ENST00000671605.1:ENST00000499988.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	66	2	4.58257	4.5832	4.58383	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	12585441	12585541	520676	0	-	0.64	(0.629,1]	chr1	56279	44	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	3.16128	4.583005	6.00473	2.86088e-7	8.76691e-11	2.19976e-5	1.18784e-8
chr10	96009345	96009445	6216311	0	-	0.31	[0,0.32]	chr10	555973	127	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1	lncRNA	lncRNA	lncRNA	lncRNA	1	10	2	3.98571	4.581455	5.1772	3.95466e-4	5.87341e-5	0.0132556	0.00262682
chr12	11104226	11104326	7087379	0	-	0.35	(0.32,0.36]	chr12	651865	567	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	23	2	4.42441	4.580885	4.73736	5.18532e-7	9.73027e-10	3.83329e-5	1.14776e-7
chr10	114949599	114949699	5987938	0	+	0.4	(0.392,0.424]	chr10	537913	65	INTRON	INTRON	TRUB1	ENSG00000165832.6	ENST00000298746.5:ENST00000485065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr11	123080800	123080899	6767997	0	-	0.40404	(0.392,0.424]	chr11	617722	56	INTRON	INTRON	CLMP	ENSG00000166250.12	ENST00000448775.4:ENST00000530371.5:ENST00000527977.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr12	28248669	28248769	6857253	0	+	0.41	(0.392,0.424]	chr12	626376	221	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr19	48449021	48449120	9371891	0	+	0.424242	(0.392,0.424]	chr19	912326	18	INTRON	INTRON	GRWD1	ENSG00000105447.13	ENST00000598711.1:ENST00000253237.10	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr2	45609424	45609523	1441108	0	-	0.414141	(0.392,0.424]	chr2	149477	36	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000461805.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr2	53956669	53956768	1448294	0	-	0.414141	(0.392,0.424]	chr2	150201	70	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr2	196917093	196917189	1659762	0	-	0.395833	(0.392,0.424]	chr2	170620	1	INTRON	INTRON	PGAP1	ENSG00000197121.15	ENST00000354764.9:ENST00000423035.5:ENST00000470179.5:ENST00000409475.5:ENST00000409188.5:ENST00000374738.3:ENST00000485830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr22	45747715	45747815	9962680	0	+	0.4	(0.392,0.424]	chr22	991688	30	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000435026.5:ENST00000493643.3:ENST00000451241.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr3	33598329	33598428	2231323	0	-	0.40404	(0.392,0.424]	chr3	215931	12	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr4	123211337	123211437	2731972	0	+	0.41	(0.392,0.424]	chr4	259714	1092	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr5	59281714	59281814	3475061	0	-	0.42	(0.392,0.424]	chr5	319239	57	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr5	148388969	148389068	3350620	0	+	0.393939	(0.392,0.424]	chr5	307728	35	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr6	2222443	2222542	3990800	0	-	0.414141	(0.392,0.424]	chr6	361452	466	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr6	30575324	30575423	3752327	0	+	0.393939	(0.392,0.424]	chr6	340632	34	INTRON	INTRON	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000468958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr6	38614531	38614631	4056095	0	-	0.42	(0.392,0.424]	chr6	369560	11	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000649492.1:ENST00000497373.1:ENST00000498633.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr7	22950029	22950128	4655475	0	-	0.424242	(0.392,0.424]	chr7	418321	24	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000680721.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000498833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr9	85693113	85693213	5647098	0	-	0.41	(0.392,0.424]	chr9	505773	3	SS3_PROX	SS3_PROX:INTRON	AGTPBP1	ENSG00000135049.16	ENST00000357081.8:ENST00000376083.7:ENST00000337006.8:ENST00000628899.1:ENST00000376081.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chrX	154087701	154087801	10463539	0	-	0.4	(0.392,0.424]	chrX	1037299	142	INTRON	INTRON	MECP2	ENSG00000169057.24	ENST00000303391.11:ENST00000453960.7:ENST00000628176.2:ENST00000407218.5:ENST00000369957.5:ENST00000631210.1:ENST00000496908.5:ENST00000415944.3:ENST00000630151.2:ENST00000676382.1:ENST00000611468.2:ENST00000637533.1:ENST00000675526.1:ENST00000637791.1:ENST00000675841.1:ENST00000674996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.54701	4.57997	4.61293	0.00102713	8.49057e-4	0.0276375	0.0240064
chr1	119102907	119103007	738383	0	-	0.33	(0.32,0.36]	chr1	79213	205	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr1	174510343	174510443	353547	0	+	0.34	(0.32,0.36]	chr1	38884	1158	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr1	198224792	198224891	390269	0	+	0.343434	(0.32,0.36]	chr1	41977	33	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5:ENST00000544035.5:ENST00000417895.1:ENST00000391974.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr1	246332018	246332116	916782	0	-	0.357143	(0.32,0.36]	chr1	100981	11	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5:ENST00000403792.7:ENST00000470863.1:ENST00000455277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr10	100237469	100237521	6235658	0	-	0.346154	(0.32,0.36]	chr10	557706	1	INTRON	INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr11	46806546	46806644	6602102	0	-	0.346939	(0.32,0.36]	chr11	600718	44	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr12	96375119	96375218	7245705	0	-	0.353535	(0.32,0.36]	chr12	668090	399	INTRON	INTRON	CDK17	ENSG00000059758.8	ENST00000261211.8:ENST00000543119.6:ENST00000542666.5:ENST00000551816.5:ENST00000552496.5:ENST00000552262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr15	33861478	33861577	8121521	0	-	0.343434	(0.32,0.36]	chr15	751310	20	INTRON	INTRON	ENSG00000259287:AVEN	ENSG00000259287.2:ENSG00000169857.9	ENST00000560268.2:ENST00000675287.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr15	63705381	63705481	8210367	0	-	0.35	(0.32,0.36]	chr15	761335	60	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr16	89529134	89529209	8482029	0	+	0.36	(0.32,0.36]	chr16	793051	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr18	24109655	24109755	9084552	0	+	0.35	(0.32,0.36]	chr18	877907	262	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr2	47885931	47886031	1443780	0	-	0.35	(0.32,0.36]	chr2	149787	197	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2:ENST00000480038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr3	99970810	99970910	1936491	0	+	0.36	(0.32,0.36]	chr3	195309	1524	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr3	159856436	159856536	2068572	0	+	0.36	(0.32,0.36]	chr3	205342	26	INTRON	INTRON	IQCJ-SCHIP1:SCHIP1	ENSG00000283154.3:ENSG00000151967.18	ENST00000485419.7:ENST00000476809.7:ENST00000638749.2:ENST00000412423.8:ENST00000527095.7:ENST00000689690.1:ENST00000460298.3:ENST00000638311.1:ENST00000445224.6:ENST00000461058.5:ENST00000495954.5:ENST00000472483.5:ENST00000482804.1:ENST00000482885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr3	197163833	197163932	2533963	0	-	0.323232	(0.32,0.36]	chr3	243072	17	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5:ENST00000456699.6:ENST00000392380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr4	89011474	89011574	2954855	0	-	0.33	(0.32,0.36]	chr4	277858	20	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5:ENST00000515600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr5	55991789	55991889	3471233	0	-	0.34	(0.32,0.36]	chr5	318961	86	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000577363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr5	134218976	134219076	3601628	0	-	0.34	(0.32,0.36]	chr5	327259	125	INTRON	INTRON	PPP2CA	ENSG00000113575.10	ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr6	38523647	38523747	4055177	0	-	0.36	(0.32,0.36]	chr6	369512	187	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr8	25309617	25309713	4950782	0	+	0.333333	(0.32,0.36]	chr8	443388	3	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000478099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chrX	71429726	71429825	10156939	0	+	0.333333	(0.32,0.36]	chrX	1012563	51	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5:ENST00000468167.6:ENST00000683954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chrX	111714289	111714387	10206017	0	+	0.357143	(0.32,0.36]	chrX	1016297	1	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.32952	4.578675	4.82783	0.00388505	4.57616e-4	0.0816719	0.0150584
chr22	37877473	37877573	9941885	0	+	0.46	(0.459,0.49]	chr22	988544	4	SS3_PROX	SS3_PROX:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	51	2	3.61165	4.578285	5.54492	1.48126e-12	1e-12	2.5056e-10	1.72912e-10
chr1	39256056	39256155	113382	0	+	0.353535	(0.32,0.36]	chr1	12923	13	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000688212.1:ENST00000672812.1:ENST00000564288.6:ENST00000480624.5:ENST00000671089.2:ENST00000690080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr1	70230277	70230370	195812	0	+	0.344086	(0.32,0.36]	chr1	21030	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000687381.1:ENST00000370950.7:ENST00000475204.5:ENST00000370949.2:ENST00000395136.7:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5:ENST00000463116.1:ENST00000484162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr11	9406515	9406613	6313242	0	+	0.346939	(0.32,0.36]	chr11	566530	28	INTRON	INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr12	11160932	11161032	7087948	0	-	0.36	(0.32,0.36]	chr12	651870	394	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr14	31671959	31672058	7582324	0	+	0.353535	(0.32,0.36]	chr14	698852	36	INTRON	INTRON	NUBPL	ENSG00000151413.17	ENST00000550649.5:ENST00000547839.5:ENST00000281081.12:ENST00000548937.5:ENST00000552489.5:ENST00000549838.5:ENST00000550355.1:ENST00000551314.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr14	70024746	70024846	7683299	0	+	0.34	(0.32,0.36]	chr14	706267	9	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr16	57176294	57176389	8563343	0	-	0.357895	(0.32,0.36]	chr16	806233	2	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr17	54927088	54927187	8743366	0	+	0.353535	(0.32,0.36]	chr17	832423	98	INTRON	INTRON	TOM1L1	ENSG00000141198.16	ENST00000570371.5:ENST00000570965.5:ENST00000445275.6:ENST00000348161.8:ENST00000576932.5:ENST00000572158.5:ENST00000575882.6:ENST00000571319.5:ENST00000536554.5:ENST00000575333.5:ENST00000572576.5:ENST00000570977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr2	69074295	69074394	1063628	0	+	0.323232	(0.32,0.36]	chr2	113033	8	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000481119.2:ENST00000303714.9:ENST00000409829.7:ENST00000463335.2:ENST00000409349.7:ENST00000681816.1:ENST00000482235.2:ENST00000679548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr22	36022041	36022141	10028546	0	-	0.35	(0.32,0.36]	chr22	998807	605	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr3	105424546	105424646	1943875	0	+	0.33	(0.32,0.36]	chr3	195985	567	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr3	111116061	111116161	1951204	0	+	0.35	(0.32,0.36]	chr3	196559	33	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000491525.5:ENST00000461477.5:ENST00000485303.6:ENST00000319792.7:ENST00000486596.5:ENST00000493615.5:ENST00000470618.1:ENST00000481766.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr3	188713537	188713637	2136614	0	+	0.36	(0.32,0.36]	chr3	209681	8	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr5	34003282	34003380	3436806	0	-	0.357143	(0.32,0.36]	chr5	315969	41	INTRON	INTRON	AMACR	ENSG00000242110.8	ENST00000335606.11:ENST00000382072.6:ENST00000506639.5:ENST00000514195.1:ENST00000382085.7:ENST00000502637.5:ENST00000426255.6:ENST00000512079.5:ENST00000382068.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr5	177228565	177228665	3400705	0	+	0.34	(0.32,0.36]	chr5	312087	160	INTRON	INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000510954.6:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000375350.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr6	110728528	110728628	4164705	0	-	0.33	(0.32,0.36]	chr6	379222	576	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr6	136447176	136447276	4209820	0	-	0.33	(0.32,0.36]	chr6	383038	250	INTRON	INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000544465.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr6	147284898	147284998	3914205	0	+	0.35	(0.32,0.36]	chr6	357131	63	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr7	8050244	8050344	4308570	0	+	0.36	(0.32,0.36]	chr7	390329	251	INTRON	INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000430798.1:ENST00000414914.5:ENST00000470583.5:ENST00000474269.5:ENST00000489405.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr7	24654705	24654805	4331104	0	+	0.34	(0.32,0.36]	chr7	391614	36	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr7	116870222	116870322	4522457	0	+	0.36	(0.32,0.36]	chr7	407224	72	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000639546.1:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000461878.5:ENST00000466023.1:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr7	123686761	123686859	4837743	0	-	0.326531	(0.32,0.36]	chr7	433188	18	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr8	39076463	39076551	4974269	0	+	0.352273	(0.32,0.36]	chr8	446055	2	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chr9	123923791	123923891	5731367	0	-	0.33	(0.32,0.36]	chr9	513688	444	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.42963	4.5780650000000005	4.7265	0.00312289	6.12159e-4	0.0697855	0.0189985
chrX	72473988	72474084	10370975	0	-	0.427083	(0.424,0.459]	chrX	1029675	7	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000648158.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	4.37807	4.57749	4.77691	4.08028e-8	6.38236e-11	3.72797e-6	8.83344e-9
chr1	92359179	92359279	232906	0	+	0.4	(0.392,0.424]	chr1	23273	129	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	3.18804	4.57733	5.96662	3.14916e-4	6.28695e-9	0.0110581	6.5739e-7
chr22	19760328	19760404	9895655	0	+	0.394737	(0.392,0.424]	chr22	982179	3	INTRON	INTRON	TBX1	ENSG00000184058.15	ENST00000359500.7:ENST00000329705.11:ENST00000332710.8:ENST00000680333.1	protein_coding	protein_coding	protein_coding	protein_coding	12	66	2	4.3569	4.5770800000000005	4.79726	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	4405767	4405867	8502324	0	-	0.6	(0.57,0.629]	chr16	797166	2	SS3_PROX	SS3_PROX:INTRON	CORO7	ENSG00000262246.6	ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000575714.5:ENST00000574311.5:ENST00000576437.5:ENST00000571756.5:ENST00000572549.5:ENST00000572044.1:ENST00000571059.5:ENST00000571052.5:ENST00000575038.5:ENST00000570645.5:ENST00000570928.5:ENST00000575850.5:ENST00000572153.5:ENST00000572898.1:ENST00000576051.5:ENST00000576457.5:ENST00000577144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.21821	4.57623	4.93425	0.00185391	2.91369e-5	0.0459841	0.00141183
chr21	45984268	45984335	9834171	0	+	0.61194	(0.57,0.629]	chr21	975571	1	CDS	CDS:EXON_MRNA	COL6A1	ENSG00000142156.16	ENST00000361866.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.21821	4.57623	4.93425	0.00185391	2.91369e-5	0.0459841	0.00141183
chr5	172922868	172922968	3392743	0	+	0.61	(0.57,0.629]	chr5	311261	4	SS5_PROX	SS5_PROX:INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000518247.5:ENST00000519567.5:ENST00000519796.5:ENST00000523650.5:ENST00000521392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	4.21821	4.57623	4.93425	0.00185391	2.91369e-5	0.0459841	0.00141183
chr8	38168011	38168110	5158180	0	-	0.606061	(0.57,0.629]	chr8	461878	38	INTRON	INTRON	LSM1	ENSG00000175324.10	ENST00000520755.5:ENST00000311351.9:ENST00000522515.5:ENST00000520286.5:ENST00000523511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.21821	4.57623	4.93425	0.00185391	2.91369e-5	0.0459841	0.00141183
chr6	136471771	136471871	4210067	0	-	0.35	(0.32,0.36]	chr6	383043	50	INTRON	INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.75647	4.576115	5.39576	6.44559e-5	9.86331e-6	0.00284455	5.39872e-4
chr10	124967579	124967679	6011018	0	+	0.58	(0.57,0.629]	chr10	539632	4	INTRON	INTRON	ZRANB1	ENSG00000019995.6	ENST00000359653.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.28422	4.575570000000001	4.86692	0.00145677	4.28317e-5	0.0382827	0.0019752
chr17	47480291	47480391	8953655	0	-	0.58	(0.57,0.629]	chr17	861251	231	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	4.28422	4.575570000000001	4.86692	0.00145677	4.28317e-5	0.0382827	0.0019752
chr19	15250275	15250372	9448242	0	-	0.587629	(0.57,0.629]	chr19	928284	6	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.28422	4.575570000000001	4.86692	0.00145677	4.28317e-5	0.0382827	0.0019752
chr7	6461384	6461483	4622067	0	-	0.606061	(0.57,0.629]	chr7	416446	4	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.28422	4.575570000000001	4.86692	0.00145677	4.28317e-5	0.0382827	0.0019752
chr9	127842893	127842993	5743022	0	-	0.59	(0.57,0.629]	chr9	514673	4	SS5_PROX	SS5_PROX:INTRON	ENG	ENSG00000106991.14	ENST00000480266.5:ENST00000373203.9:ENST00000344849.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.28422	4.575570000000001	4.86692	0.00145677	4.28317e-5	0.0382827	0.0019752
chr7	1028850	1028950	4604211	0	-	0.65	(0.629,1]	chr7	414621	6	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.12843	4.57489	5.02135	0.00233396	9.70346e-6	0.0563219	5.37523e-4
chr18	8354407	8354507	9052535	0	+	0.5	(0.49,0.526]	chr18	874866	105	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8:ENST00000577827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	3.42424	4.574755	5.72527	8.36246e-5	1.60521e-8	0.00356417	1.5647e-6
chr10	74890471	74890571	5900987	0	+	0.39	(0.36,0.392]	chr10	529862	433	INTRON	INTRON	KAT6B	ENSG00000156650.14	ENST00000648725.1:ENST00000648159.1:ENST00000649006.1:ENST00000649463.1:ENST00000372725.6:ENST00000650232.1:ENST00000648370.1:ENST00000648899.1:ENST00000648483.1:ENST00000648892.1:ENST00000372724.6:ENST00000649657.1:ENST00000372714.6:ENST00000649442.1:ENST00000287239.10:ENST00000648048.1:ENST00000647666.1:ENST00000649375.1:ENST00000650330.1:ENST00000650380.1:ENST00000647637.1:ENST00000372711.2:ENST00000648369.1:ENST00000650048.1:ENST00000647642.1:ENST00000650517.1:ENST00000647554.1:ENST00000648302.1:ENST00000649645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	4.26063	4.57472	4.88881	0.00451705	8.92448e-8	0.0875511	7.65609e-6
chr1	114415397	114415496	730402	0	-	0.40404	(0.392,0.424]	chr1	78278	47	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.03703	4.57414	5.11125	1.48653e-4	3.31137e-5	0.00578975	0.00159224
chr7	102558395	102558495	4793242	0	-	0.48	(0.459,0.49]	chr7	430367	126	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	3.66648	4.57394	5.4814	3.84332e-7	1e-12	2.9216e-5	1.72912e-10
chr12	43949440	43949540	6883881	0	+	0.42	(0.392,0.424]	chr12	628131	47	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.39796	4.57384	5.74972	0.00439831	1.25981e-7	0.0875511	1.05791e-5
chr19	57822937	57823037	9395693	0	+	0.46	(0.459,0.49]	chr19	917451	20	INTRON	INTRON	ZNF587B	ENSG00000269343.9	ENST00000651253.2:ENST00000594328.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	4.4153	4.573745000000001	4.73219	8.98032e-7	3.0068e-8	6.37943e-5	2.8316e-6
chr1	233163655	233163755	887292	0	-	0.43	(0.424,0.459]	chr1	98763	19	INTRON	INTRON	PCNX2	ENSG00000135749.19	ENST00000258229.14:ENST00000462233.5:ENST00000475463.6:ENST00000486012.5:ENST00000488780.6:ENST00000430153.5:ENST00000467336.6:ENST00000496510.6:ENST00000498302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.23804	4.571994999999999	5.90595	0.00649971	1.00338e-8	0.114061	1.01215e-6
chr3	134364927	134365024	2443282	0	-	0.618557	(0.57,0.629]	chr3	234526	28	INTRON	INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000506326.1:ENST00000513145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	4.1094	4.571524999999999	5.03365	1.78247e-11	1e-12	2.65384e-9	1.72912e-10
chr4	26347666	26347766	2590027	0	+	0.42	(0.392,0.424]	chr4	248535	25	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	4.53319	4.57092	4.60865	1.61757e-6	1.06475e-6	1.08646e-4	7.43219e-5
chr17	42846514	42846614	8718818	0	+	0.58	(0.57,0.629]	chr17	827652	3	SS5_PROX	SS5_PROX:INTRON	AOC2	ENSG00000131480.9	ENST00000253799.8:ENST00000452774.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.42043	4.570835	5.72124	9.02612e-4	1.18386e-8	0.0258498	1.18974e-6
chr9	37195545	37195645	5379689	0	+	0.4	(0.392,0.424]	chr9	480690	86	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	3.81299	4.57033	5.32767	2.36886e-5	5.95442e-6	0.00119556	3.4453e-4
chr12	71900835	71900934	6954028	0	+	0.414141	(0.392,0.424]	chr12	636873	25	INTRON	INTRON	TBC1D15	ENSG00000121749.16	ENST00000550746.5:ENST00000485960.7:ENST00000462788.6:ENST00000319106.12:ENST00000483828.6:ENST00000548679.5:ENST00000479971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.96221	4.570155	5.1781	1.96069e-4	2.48959e-5	0.00725539	0.00122627
chr21	37432196	37432295	9813573	0	+	0.414141	(0.392,0.424]	chr21	972944	14	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.96221	4.570155	5.1781	1.96069e-4	2.48959e-5	0.00725539	0.00122627
chrX	136877514	136877614	10448044	0	-	0.56	(0.526,0.57]	chrX	1035625	2	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.0435	4.569075	5.09465	1.16684e-5	8.75788e-8	6.16746e-4	7.57468e-6
chr9	133417928	133418012	5759798	0	-	0.666667	(0.629,1]	chr9	517293	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	REXO4	ENSG00000148300.12	ENST00000371935.6:ENST00000371942.8:ENST00000454825.1:ENST00000494045.5:ENST00000478037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.8818	4.568655	5.25551	0.0064023	1.19594e-6	0.114061	8.2089e-5
chr11	58592667	58592767	6399249	0	+	0.37	(0.36,0.392]	chr11	573836	74	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.16662	4.5669	4.96718	1.24104e-4	9.16296e-5	0.0049353	0.00387303
chr7	111075840	111075940	4814460	0	-	0.31	[0,0.32]	chr7	431926	1119	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	4.31876	4.56687	4.81498	5.15904e-5	3.34826e-7	0.00235512	2.57546e-5
chr5	131772844	131772944	3595563	0	-	0.38	(0.36,0.392]	chr5	326445	278	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.91092	4.5667100000000005	5.2225	5.00165e-4	2.06042e-5	0.0160179	0.00103061
chr7	116372699	116372799	4518830	0	+	0.39	(0.36,0.392]	chr7	406990	183	INTRON	INTRON	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000478226.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	11	2	3.91092	4.5667100000000005	5.2225	5.00165e-4	2.06042e-5	0.0160179	0.00103061
chr9	5757751	5757851	5328341	0	+	0.39	(0.36,0.392]	chr9	476911	3	SS5_PROX	SS5_PROX:INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.91092	4.5667100000000005	5.2225	5.00165e-4	2.06042e-5	0.0160179	0.00103061
chr1	109228532	109228627	251334	0	+	0.389474	(0.36,0.392]	chr1	25533	1	SS5_PROX	SS5_PROX:INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	4.31565	4.566585	4.81752	1.47786e-7	1e-12	1.22253e-5	1.72912e-10
chr13	47952263	47952362	7520527	0	-	0.424242	(0.392,0.424]	chr13	691645	23	INTRON	INTRON	SUCLA2	ENSG00000136143.16	ENST00000643584.1:ENST00000646932.1:ENST00000643023.1:ENST00000646804.1:ENST00000647361.1:ENST00000642944.1:ENST00000467222.1:ENST00000634878.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	43	2	4.19185	4.5665	4.94115	3.03463e-11	1e-12	4.3995e-9	1.72912e-10
chr5	137460896	137460996	3608835	0	-	0.46	(0.459,0.49]	chr5	327611	956	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	4.51255	4.56562	4.61869	6.3564e-4	1.26997e-7	0.0193151	1.06312e-5
chr1	77951880	77951979	665287	0	-	0.424242	(0.392,0.424]	chr1	72684	22	INTRON	INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	3.73536	4.565075	5.39479	3.4035e-5	4.26975e-6	0.0016098	2.57151e-4
chr5	109056497	109056597	3270858	0	+	0.43	(0.424,0.459]	chr5	301271	89	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	61	2	4.0173	4.56479	5.11228	3.11406e-12	1e-12	5.07746e-10	1.72912e-10
chr2	11303724	11303824	1381527	0	-	0.41	(0.392,0.424]	chr2	143172	156	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	4.42363	4.5647	4.70577	1.49344e-8	3.16586e-10	1.47914e-6	3.98256e-8
chr1	31937654	31937754	561322	0	-	0.68	(0.629,1]	chr1	62937	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	4.54982	4.56428	4.57874	3.56708e-9	1e-12	3.89943e-7	1.72912e-10
chr8	116866032	116866131	5255897	0	-	0.383838	(0.36,0.392]	chr8	469673	29	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000687122.1:ENST00000685972.1:ENST00000687902.1:ENST00000690166.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1:ENST00000519469.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	3.94713	4.56405	5.18097	1.25643e-5	8.72996e-10	6.61709e-4	1.04054e-7
chr18	21354692	21354792	9072333	0	+	0.37	(0.36,0.392]	chr18	876596	1119	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.83113	4.563025	5.29492	6.41601e-4	1.51392e-5	0.0193935	7.85619e-4
chr4	102880670	102880770	2701138	0	+	0.39	(0.36,0.392]	chr4	257089	56	INTRON	INTRON	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.83113	4.563025	5.29492	6.41601e-4	1.51392e-5	0.0193935	7.85619e-4
chr17	21002539	21002637	8894148	0	-	0.479592	(0.459,0.49]	chr17	851723	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	4.3608	4.562905000000001	4.76501	1.46149e-4	2.23014e-6	0.00564049	1.43671e-4
chr17	47480191	47480291	8953654	0	-	0.46	(0.459,0.49]	chr17	861251	230	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	16	2	4.3608	4.562905000000001	4.76501	1.46149e-4	2.23014e-6	0.00564049	1.43671e-4
chr11	73827091	73827191	6439551	0	+	0.49	(0.459,0.49]	chr11	581905	9	INTRON	INTRON	MRPL48	ENSG00000175581.14	ENST00000508278.6:ENST00000310614.12:ENST00000540162.5:ENST00000544140.5:ENST00000544819.5:ENST00000497094.6:ENST00000411840.6:ENST00000398483.7:ENST00000535277.5:ENST00000542303.5:ENST00000537007.5:ENST00000543058.1:ENST00000543374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	3.64423	4.562415	5.4806	6.20842e-4	4.11395e-7	0.0191195	3.09732e-5
chr8	116755065	116755165	5255558	0	-	0.31	[0,0.32]	chr8	469609	174	INTRON	INTRON	EIF3H	ENSG00000147677.12	ENST00000521861.6:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	4.39782	4.561625	4.72543	0.00334699	1.35488e-6	0.0734189	9.17479e-5
chr12	11081251	11081351	7087149	0	-	0.27	[0,0.32]	chr12	651865	337	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	11	2	3.35176	4.5606	5.76944	0.0102933	2.56854e-7	0.170122	2.02856e-5
chr13	48427031	48427131	7376567	0	+	0.5	(0.49,0.526]	chr13	681714	452	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	4.32422	4.5605150000000005	4.79681	3.35573e-9	2.73466e-9	3.68324e-7	3.02192e-7
chr9	17681101	17681201	5346112	0	+	0.33	(0.32,0.36]	chr9	477852	508	INTRON	INTRON	SH3GL2	ENSG00000107295.10	ENST00000380607.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	4.26152	4.5596499999999995	4.85778	4.6382e-7	1.99542e-10	3.4771e-5	2.57666e-8
chr1	88785510	88785603	227591	0	+	0.483871	(0.459,0.49]	chr1	22811	3	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9:ENST00000436111.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	4.38704	4.559615	4.73219	3.0068e-8	1.51757e-9	2.8316e-6	1.74447e-7
chr5	6741314	6741411	3114123	0	+	0.453608	(0.424,0.459]	chr5	288504	11	INTRON	INTRON	TENT4A	ENSG00000112941.14	ENST00000230859.8:ENST00000631941.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	4.36966	4.559495	4.74933	3.96287e-6	9.96009e-8	2.39291e-4	8.4812e-6
chr11	122230653	122230753	6764524	0	-	0.42	(0.392,0.424]	chr11	617593	264	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5	lncRNA	lncRNA	lncRNA	lncRNA	6	38	2	4.44783	4.559075	4.67032	6.6179e-11	1e-12	9.13193e-9	1.73382e-10
chr2	69181185	69181285	1064709	0	+	0.48	(0.459,0.49]	chr2	113097	88	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000303714.9	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	4.28074	4.55907	4.8374	3.57604e-6	7.08953e-9	2.18487e-4	7.39732e-7
chr13	112736763	112736863	7449006	0	+	0.27	[0,0.32]	chr13	685908	192	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.27638	4.55831	5.84024	0.0118823	1.72569e-7	0.184357	1.40017e-5
chr20	25262035	25262135	9620710	0	+	0.45	(0.424,0.459]	chr20	949326	23	INTRON	INTRON	PYGB	ENSG00000100994.12	ENST00000216962.9	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	3.57829	4.557945	5.5376	4.83052e-7	3.93383e-7	3.58077e-5	2.9597e-5
chr4	119421862	119421950	3003675	0	-	0.511364	(0.49,0.526]	chr4	281040	7	INTRON	INTRON	GTF2IP12	ENSG00000283050.3	ENST00000651444.1:ENST00000634317.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	55	2	4.29939	4.55765	4.81591	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	131109636	131109736	4849228	0	-	0.51	(0.49,0.526]	chr7	434524	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC-PINT	ENSG00000231721.7	ENST00000451786.5	lncRNA	lncRNA	lncRNA	lncRNA	8	71	2	4.07428	4.557634999999999	5.04099	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	66390640	66390740	8779792	0	+	0.5	(0.49,0.526]	chr17	835622	507	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	3.98392	4.55743	5.13094	3.07012e-5	2.38916e-11	0.00150487	3.48506e-9
chr15	69228500	69228600	8022567	0	+	0.29	[0,0.32]	chr15	741605	177	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.31876	4.5572	4.79564	5.01883e-4	5.15904e-5	0.0161742	0.00235512
chr2	161169516	161169616	1192165	0	+	0.28	[0,0.32]	chr2	125365	61	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000463502.1:ENST00000440506.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000405852.5:ENST00000456358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	4.31876	4.5572	4.79564	5.01883e-4	5.15904e-5	0.0161742	0.00235512
chr9	109130490	109130590	5686603	0	-	0.25	[0,0.32]	chr9	509787	3	UTR3	UTR3:EXON_MRNA	FRRS1L	ENSG00000260230.5	ENST00000561981.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.31876	4.5572	4.79564	5.01883e-4	5.15904e-5	0.0161742	0.00235512
chr22	19422523	19422623	9987349	0	-	0.52	(0.49,0.526]	chr22	994257	114	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	4.0726	4.55719	5.04178	1.93553e-5	1.57703e-5	9.87839e-4	8.20905e-4
chr14	50909963	50910032	7825120	0	-	0.507246	(0.49,0.526]	chr14	720711	2	CDS	CDS:EXON_MRNA	PYGL	ENSG00000100504.17	ENST00000532462.5:ENST00000216392.8:ENST00000544180.6:ENST00000532107.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.9073	4.557065	5.20683	7.31994e-5	3.9703e-6	0.00316256	2.39291e-4
chr17	47607331	47607430	8734111	0	+	0.434343	(0.424,0.459]	chr17	829992	14	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000525048.5:ENST00000531486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	4.11799	4.55697	4.99595	5.78925e-9	1.88138e-9	6.09992e-7	2.13412e-7
chr2	151421173	151421271	1173985	0	+	0.428571	(0.424,0.459]	chr2	124309	4	INTRON	INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6:ENST00000498041.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	4.11799	4.55697	4.99595	5.78925e-9	1.88138e-9	6.09992e-7	2.13412e-7
chr12	120528990	120529041	7300887	0	-	0.647059	(0.629,1]	chr12	673902	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	COQ5	ENSG00000110871.15	ENST00000288532.11:ENST00000445328.6:ENST00000552443.5:ENST00000547943.5:ENST00000551769.1:ENST00000547736.1:ENST00000547448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.32274	4.55688	5.79102	7.60906e-4	2.26028e-9	0.0223166	2.53515e-7
chr17	37293309	37293409	8918525	0	-	0.31	[0,0.32]	chr17	855223	34	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.75039	4.55679	5.36319	0.00182075	1.13263e-5	0.0469284	6.25152e-4
chr11	47839248	47839342	6606832	0	-	0.489362	(0.459,0.49]	chr11	601747	13	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.28074	4.556725	4.83271	1.09213e-4	3.57604e-6	0.00442392	2.18487e-4
chr3	185277184	185277284	2510525	0	-	0.41	(0.392,0.424]	chr3	240404	233	INTRON	INTRON	EHHADH	ENSG00000113790.11	ENST00000465178.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	20	2	4.18975	4.556385000000001	4.92302	1.45314e-4	3.14687e-9	0.00569484	3.46163e-7
chr3	51159243	51159304	1876411	0	+	0.409836	(0.392,0.424]	chr3	190479	1	CDS	CDS:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.25372	4.55513	4.85654	1.84333e-4	2.90267e-5	0.00688171	0.00141183
chr15	88519556	88519655	8270273	0	-	0.393939	(0.392,0.424]	chr15	767848	22	INTRON	INTRON	DET1	ENSG00000140543.15	ENST00000557842.6:ENST00000268148.13:ENST00000557837.1:ENST00000564406.5:ENST00000444300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.78194	4.554805	5.32767	7.47402e-4	5.95442e-6	0.0225125	3.4453e-4
chr3	142015017	142015116	2455214	0	-	0.414141	(0.392,0.424]	chr3	235681	91	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.78194	4.554805	5.32767	7.47402e-4	5.95442e-6	0.0225125	3.4453e-4
chr12	50801586	50801686	6911119	0	+	0.29	[0,0.32]	chr12	630135	52	INTRON	INTRON	ATF1	ENSG00000123268.9	ENST00000552510.5:ENST00000549612.5:ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.6742	4.553884999999999	5.43357	0.00220802	8.40147e-6	0.053911	4.71048e-4
chrX	15350703	15350801	10281293	0	-	0.295918	[0,0.32]	chrX	1022653	30	INTRON	INTRON	VEGFD	ENSG00000165197.5	ENST00000297904.4	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.24175	4.553475	4.8652	4.11137e-4	6.90565e-5	0.0138446	0.00300464
chr8	95032688	95032779	5027224	0	+	0.428571	(0.424,0.459]	chr8	451429	2	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6:ENST00000396124.9:ENST00000518258.5:ENST00000523337.5:ENST00000517976.5:ENST00000520632.5:ENST00000522683.5:ENST00000520757.1:ENST00000454358.6:ENST00000518608.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	4.11093	4.55344	4.99595	5.36389e-5	1.88138e-9	0.00243585	2.13412e-7
chr12	123512161	123512260	7314347	0	-	0.545455	(0.526,0.57]	chr12	675726	123	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	65	2	4.14397	4.55307	4.96217	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	47881133	47881233	9218867	0	-	0.34	(0.32,0.36]	chr18	888136	102	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000586040.5:ENST00000591214.5:ENST00000587353.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000586487.2:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	4.52295	4.552985	4.58302	1.73218e-10	1.75027e-11	2.25211e-8	2.60849e-9
chr5	10412417	10412512	3120468	0	+	0.442105	(0.424,0.459]	chr5	289083	5	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	4.54922	4.552985	4.55675	1.17263e-9	6.24647e-10	1.37264e-7	7.58161e-8
chrX	73821242	73821341	10373419	0	-	0.333333	(0.32,0.36]	chrX	1029941	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1	lncRNA	lncRNA	lncRNA	lncRNA	2	14	2	4.3783	4.5524000000000004	4.7265	6.12159e-4	2.30074e-7	0.0189985	1.8106e-5
chr15	41104718	41104818	8138456	0	-	0.5	(0.49,0.526]	chr15	753133	80	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr16	30973899	30973998	8371714	0	+	0.515152	(0.49,0.526]	chr16	781924	18	INTRON	INTRON	SETD1A	ENSG00000099381.19	ENST00000262519.14:ENST00000684162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr16	57644412	57644508	8400990	0	+	0.520833	(0.49,0.526]	chr16	785663	8	INTRON	INTRON	ADGRG1	ENSG00000205336.14	ENST00000565587.5:ENST00000568791.5:ENST00000570044.5:ENST00000567553.5:ENST00000565314.5:ENST00000564912.5:ENST00000562673.5:ENST00000564907.5:ENST00000568908.5:ENST00000568909.5:ENST00000566778.5:ENST00000561988.5:ENST00000561872.5:ENST00000562101.5:ENST00000567835.5:ENST00000563548.5:ENST00000569372.5:ENST00000562003.5:ENST00000561833.5:ENST00000569531.5:ENST00000561696.5:ENST00000565013.5:ENST00000562414.5:ENST00000561969.5:ENST00000563445.5:ENST00000562608.5:ENST00000565338.5:ENST00000567702.5:ENST00000456916.5:ENST00000567154.5:ENST00000388813.9:ENST00000563007.5:ENST00000562558.6:ENST00000566271.6:ENST00000568645.5:ENST00000563374.5:ENST00000673126.2:ENST00000562631.7:ENST00000568234.5:ENST00000566164.5:ENST00000565770.5:ENST00000672974.1:ENST00000568979.5:ENST00000567397.5:ENST00000569992.5:ENST00000566123.5:ENST00000562682.5:ENST00000561782.5:ENST00000564783.5:ENST00000564729.5:ENST00000565976.6:ENST00000566888.5:ENST00000565539.5:ENST00000566508.5:ENST00000567915.5:ENST00000569132.5:ENST00000564103.5:ENST00000562467.5:ENST00000568700.1:ENST00000540164.6:ENST00000568531.5:ENST00000564360.5:ENST00000568074.5:ENST00000563414.5:ENST00000568618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr2	210564729	210564829	1295978	0	+	0.5	(0.49,0.526]	chr2	134054	75	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr2	216504484	216504584	1310760	0	+	0.5	(0.49,0.526]	chr2	134806	5	INTRON	INTRON	RPL37A	ENSG00000197756.10	ENST00000600880.5:ENST00000446558.5:ENST00000598925.5:ENST00000427280.6:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr7	99345505	99345603	4487491	0	+	0.510204	(0.49,0.526]	chr7	403200	6	INTRON	INTRON	ARPC1A	ENSG00000241685.10	ENST00000262942.10:ENST00000432786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr9	34111156	34111256	5607692	0	-	0.5	(0.49,0.526]	chr9	502239	32	INTRON	INTRON	DCAF12	ENSG00000198876.13	ENST00000361264.9:ENST00000396990.6:ENST00000450964.1:ENST00000463286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr9	78020716	78020816	5638761	0	-	0.51	(0.49,0.526]	chr9	505007	980	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.38975	4.55232	4.71489	9.92102e-4	1.81396e-4	0.0276375	0.0069054
chr22	23970055	23970146	9905877	0	+	0.615385	(0.57,0.629]	chr22	983883	3	INTRON	INTRON	DDTL	ENSG00000099974.8	ENST00000215770.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	3.26242	4.5522	5.84198	1.01567e-5	1.89943e-9	5.53203e-4	2.14969e-7
chr1	113937798	113937898	266514	0	+	0.51	(0.49,0.526]	chr1	27411	42	INTRON	INTRON	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000514621.5:ENST00000503968.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr1	151453198	151453295	766529	0	-	0.494845	(0.49,0.526]	chr1	83641	18	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1:ENST00000476128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr1	153897261	153897360	769346	0	-	0.525253	(0.49,0.526]	chr1	84224	104	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr10	73515874	73515974	6165702	0	-	0.5	(0.49,0.526]	chr10	552132	1	SS5_PROX	SS5_PROX:INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000687698.1:ENST00000424265.5:ENST00000466048.6:ENST00000418501.5:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000691043.1:ENST00000681793.1:ENST00000687418.1:ENST00000693251.1:ENST00000680396.1:ENST00000497106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr11	75346794	75346894	6653135	0	-	0.52	(0.49,0.526]	chr11	610002	348	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr12	6989863	6989962	6814096	0	+	0.515152	(0.49,0.526]	chr12	622709	11	INTRON	INTRON	EMG1:C1S	ENSG00000126749.16:ENSG00000182326.16	ENST00000607161.5:ENST00000406697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr14	77729993	77730092	7874857	0	-	0.494949	(0.49,0.526]	chr14	726156	64	INTRON	INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr16	74590081	74590181	8600521	0	-	0.52	(0.49,0.526]	chr16	810626	269	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr17	45028206	45028305	8944243	0	-	0.494949	(0.49,0.526]	chr17	860264	10	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000692009.1:ENST00000452796.7:ENST00000651974.1:ENST00000692137.1:ENST00000691405.1:ENST00000310604.9:ENST00000688601.1:ENST00000614054.5:ENST00000690580.1:ENST00000687739.1:ENST00000688897.1:ENST00000687955.1:ENST00000688577.1:ENST00000588499.6:ENST00000684999.1:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr19	3460962	3461061	9267959	0	+	0.494949	(0.49,0.526]	chr19	893645	31	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr19	35252855	35252955	9330713	0	+	0.51	(0.49,0.526]	chr19	904934	18	INTRON	INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr2	44356964	44357061	1438830	0	-	0.494845	(0.49,0.526]	chr2	149334	2	INTRON	INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000540817.1:ENST00000438314.1:ENST00000477410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr5	37399067	37399167	3152037	0	+	0.51	(0.49,0.526]	chr5	291390	21	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chrX	119679051	119679151	10415860	0	-	0.52	(0.49,0.526]	chrX	1033270	30	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.4628	4.552035	4.64127	7.611e-4	2.4929e-4	0.0225125	0.0089494
chr1	228140227	228140302	448344	0	+	0.746667	(0.629,1]	chr1	48219	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000469973.1:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.79995	4.551425	5.3029	2.99254e-5	7.37915e-7	0.00144698	5.32314e-5
chr11	129172114	129172214	6777809	0	-	0.42	(0.392,0.424]	chr11	618734	73	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.7075	4.551145	5.39479	9.40427e-4	4.26975e-6	0.0266969	2.57151e-4
chr2	241766809	241766909	1366077	0	+	0.66	(0.629,1]	chr2	141380	104	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.52269	4.55059	4.57849	3.10525e-4	2.2493e-4	0.0106515	0.00827964
chr17	35827397	35827496	8704302	0	+	0.515152	(0.49,0.526]	chr17	824683	16	INTRON	INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.98392	4.550025	5.11613	3.07012e-5	1.03252e-5	0.00150487	5.57702e-4
chr1	227168424	227168524	875707	0	-	0.33	(0.32,0.36]	chr1	97575	74	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	4.06155	4.54952	5.03749	9.65678e-5	7.26161e-6	0.00399919	4.19717e-4
chr16	22038169	22038269	8347497	0	+	0.31	[0,0.32]	chr16	778192	294	INTRON	INTRON	MOSMO	ENSG00000185716.12	ENST00000567004.1:ENST00000542527.7:ENST00000331057.8:ENST00000569656.5:ENST00000562695.1:ENST00000562186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	3.98816	4.547655	5.10715	7.53496e-5	6.69422e-7	0.00322158	4.83422e-5
chr15	25054201	25054294	7927782	0	+	0.397849	(0.392,0.424]	chr15	731665	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656959.1:ENST00000655965.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000547292.1:ENST00000657798.1:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1	lncRNA	lncRNA	lncRNA	lncRNA	5	29	2	3.83608	4.547475	5.25887	2.9067e-8	8.96274e-11	2.74698e-6	1.21272e-8
chr1	96755778	96755877	239953	0	+	0.464646	(0.459,0.49]	chr1	24109	39	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	84	2	4.51567	4.54695	4.57823	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	2370767	2370866	496636	0	-	0.474747	(0.459,0.49]	chr1	53239	73	INTRON	INTRON	MORN1	ENSG00000116151.14	ENST00000378531.8:ENST00000606372.5:ENST00000378529.7:ENST00000607342.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr1	67729494	67729594	646459	0	-	0.48	(0.459,0.49]	chr1	71835	214	INTRON	INTRON	GNG12	ENSG00000172380.6	ENST00000370982.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr1	203809709	203809809	406068	0	+	0.46	(0.459,0.49]	chr1	43702	63	INTRON	INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000638800.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr10	103136772	103136872	6242685	0	-	0.47	(0.459,0.49]	chr10	558953	4	SS3_PROX	SS3_PROX:INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000675985.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000487810.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr10	124963094	124963194	6010973	0	+	0.48	(0.459,0.49]	chr10	539626	194	INTRON	INTRON	ZRANB1	ENSG00000019995.6	ENST00000359653.4	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr11	63854615	63854715	6410135	0	+	0.48	(0.459,0.49]	chr11	575628	42	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr14	69963224	69963324	7682673	0	+	0.47	(0.459,0.49]	chr14	706220	93	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4:ENST00000553839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr14	102238021	102238098	7915662	0	-	0.467532	(0.459,0.49]	chr14	729762	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MOK	ENSG00000080823.23	ENST00000559138.5:ENST00000559838.5:ENST00000557823.5:ENST00000521766.5:ENST00000523485.5:ENST00000517966.5:ENST00000519569.5:ENST00000361847.7:ENST00000518686.5:ENST00000522874.5:ENST00000524370.5:ENST00000523231.5:ENST00000520266.5:ENST00000519058.5:ENST00000524214.5:ENST00000522534.5:ENST00000519477.5:ENST00000524120.5:ENST00000521388.5:ENST00000562292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr15	52523182	52523282	8174214	0	-	0.49	(0.459,0.49]	chr15	758224	895	INTRON	INTRON	MYO5A	ENSG00000197535.16	ENST00000399231.8:ENST00000399233.7:ENST00000356338.11:ENST00000687574.1:ENST00000553916.6:ENST00000556196.6:ENST00000692556.1:ENST00000685053.1:ENST00000689526.1:ENST00000687728.1:ENST00000691028.1:ENST00000685760.1:ENST00000690693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr2	38301523	38301623	1419740	0	-	0.47	(0.459,0.49]	chr2	147695	8	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr22	50352540	50352640	9976502	0	+	0.47	(0.459,0.49]	chr22	992659	86	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr4	112906508	112906607	2715632	0	+	0.474747	(0.459,0.49]	chr4	258309	1	INTRON	INTRON	ANK2	ENSG00000145362.21	ENST00000672356.1:ENST00000672955.1:ENST00000683464.1:ENST00000671825.1:ENST00000672312.1:ENST00000672830.1:ENST00000672402.1:ENST00000671793.1:ENST00000672088.1:ENST00000673044.1:ENST00000672696.1:ENST00000672315.1:ENST00000672684.1:ENST00000672934.1:ENST00000673546.1:ENST00000673573.1:ENST00000671854.1:ENST00000672350.1:ENST00000672731.1:ENST00000682189.1:ENST00000683360.1:ENST00000671756.1:ENST00000671809.1:ENST00000671863.1:ENST00000671906.1:ENST00000672090.1:ENST00000672177.1:ENST00000672759.1:ENST00000672965.1:ENST00000673109.1:ENST00000672209.1:ENST00000672362.1:ENST00000672793.1:ENST00000672068.1:ENST00000673298.1:ENST00000672880.1:ENST00000672990.1:ENST00000673430.1:ENST00000671893.1:ENST00000672246.1:ENST00000672930.1:ENST00000673334.1:ENST00000673453.1:ENST00000673555.1:ENST00000673255.1:ENST00000503423.6:ENST00000683310.1:ENST00000683070.1:ENST00000673536.1:ENST00000506722.5:ENST00000503271.5:ENST00000684681.1:ENST00000672986.1:ENST00000671951.1:ENST00000671704.1:ENST00000672221.1:ENST00000684727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr5	61382623	61382723	3181893	0	+	0.49	(0.459,0.49]	chr5	293789	493	INTRON	INTRON	ZSWIM6	ENSG00000130449.6	ENST00000252744.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr5	176481455	176481555	3398558	0	+	0.48	(0.459,0.49]	chr5	311806	18	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr6	36926498	36926597	3768332	0	+	0.464646	(0.459,0.49]	chr6	344632	32	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr7	56017972	56018066	4721092	0	-	0.468085	(0.459,0.49]	chr7	423215	2	INTRON	INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000459834.5:ENST00000421626.5:ENST00000427797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr9	124729907	124730007	5734225	0	-	0.49	(0.459,0.49]	chr9	513813	1342	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.51255	4.546155000000001	4.57976	6.3564e-4	4.98571e-4	0.0193151	0.0160179
chr11	122170460	122170559	6763918	0	-	0.444444	(0.424,0.459]	chr11	617570	135	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000664908.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000656793.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000666085.1:ENST00000534297.2:ENST00000534782.4:ENST00000532350.6:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000665305.1	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	4.11572	4.541905	4.96809	6.10851e-5	5.35731e-7	0.0027377	3.93507e-5
chr4	182247174	182247274	2796549	0	+	0.45	(0.424,0.459]	chr4	264798	33	INTRON	INTRON	TENM3	ENSG00000218336.9	ENST00000513201.1:ENST00000512480.5:ENST00000511685.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.11572	4.541905	4.96809	6.10851e-5	5.35731e-7	0.0027377	3.93507e-5
chr6	167023135	167023230	3976016	0	+	0.589474	(0.57,0.629]	chr6	360578	1	INTRON	INTRON	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000496181.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	4.17442	4.5418199999999995	4.90922	2.71799e-6	2.65774e-10	1.71473e-4	3.37369e-8
chr8	118032726	118032826	5258384	0	-	0.54	(0.526,0.57]	chr8	469756	156	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	4.04709	4.540699999999999	5.03431	2.21154e-5	1.64566e-5	0.00112425	8.48927e-4
chr6	134171269	134171361	4202867	0	-	0.423913	(0.392,0.424]	chr6	382365	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SGK1	ENSG00000118515.12	ENST00000474427.6:ENST00000413996.7:ENST00000237305.11:ENST00000477460.6:ENST00000367858.10:ENST00000367855.7:ENST00000367857.9:ENST00000528577.5:ENST00000475719.6:ENST00000531782.1:ENST00000473704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.3308	4.54026	5.74972	6.63878e-4	1.25981e-7	0.0199616	1.05791e-5
chr1	25246611	25246695	547468	0	-	0.654762	(0.629,1]	chr1	60621	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000568254.5:ENST00000565733.5:ENST00000473314.6:ENST00000570063.5:ENST00000431849.3:ENST00000568212.1:ENST00000568701.1:ENST00000561867.1:ENST00000568996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.39444	4.540035	4.68563	6.41849e-4	1.13329e-4	0.0196462	0.00463413
chr11	16738643	16738710	6333752	0	+	0.641791	(0.629,1]	chr11	568248	1	UTR5	UTR5:EXON_MRNA:INTRON	C11orf58	ENSG00000110696.10	ENST00000527893.5:ENST00000524439.5:ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000525256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.39444	4.540035	4.68563	6.41849e-4	1.13329e-4	0.0196462	0.00463413
chr13	29511598	29511697	7474995	0	-	0.646465	(0.629,1]	chr13	688731	23	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.39444	4.540035	4.68563	6.41849e-4	1.13329e-4	0.0196462	0.00463413
chr17	2401006	2401104	8843917	0	-	0.673469	(0.629,1]	chr17	844347	4	UTR5	UTR5:EXON_MRNA	MNT	ENSG00000070444.15	ENST00000174618.5:ENST00000575394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.39444	4.540035	4.68563	6.41849e-4	1.13329e-4	0.0196462	0.00463413
chr19	38648760	38648859	9344582	0	+	0.454545	(0.424,0.459]	chr19	907170	1	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	4.11093	4.53951	4.96809	6.10851e-5	5.36389e-5	0.0027377	0.00243585
chr21	37379112	37379211	9813035	0	+	0.424242	(0.392,0.424]	chr21	972903	36	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	4.53319	4.539335	4.54548	1.61757e-6	1e-12	1.08646e-4	1.72912e-10
chr1	229440645	229440741	878819	0	-	0.4375	(0.424,0.459]	chr1	97849	5	UTR3	UTR3:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.89477	4.539325	5.18388	2.5121e-4	1.21594e-5	0.00902798	6.58699e-4
chr6	36493990	36494090	4048714	0	-	0.44	(0.424,0.459]	chr6	369038	2	UTR3	UTR3:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.89477	4.539325	5.18388	2.5121e-4	1.21594e-5	0.00902798	6.58699e-4
chr1	112953676	112953776	728207	0	-	0.47	(0.459,0.49]	chr1	78002	178	INTRON	INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	28	2	3.05259	4.539235	6.02588	4.05119e-6	5.95023e-10	2.43673e-4	7.22535e-8
chr12	49402384	49402484	6903289	0	+	0.42	(0.392,0.424]	chr12	629135	149	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	3.3308	4.538315	5.74583	6.63878e-4	1e-12	0.0199616	1.72912e-10
chr16	53765279	53765379	8388493	0	+	0.56	(0.526,0.57]	chr16	784138	6	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000636218.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000570395.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000640179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr19	18367236	18367335	9306412	0	+	0.555556	(0.526,0.57]	chr19	901500	38	UTR3	UTR3:EXON_MRNA:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr19	41439509	41439576	9500720	0	-	0.537313	(0.526,0.57]	chr19	936262	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DMAC2	ENSG00000105341.19	ENST00000221943.14:ENST00000438807.7:ENST00000589503.1:ENST00000592922.6:ENST00000301183.15:ENST00000589970.5:ENST00000417807.7:ENST00000590641.6:ENST00000594339.1:ENST00000597457.5:ENST00000595425.5:ENST00000589102.1:ENST00000595407.1:ENST00000586786.1:ENST00000597608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr2	127872785	127872885	1562404	0	-	0.55	(0.526,0.57]	chr2	162211	4	SS5_PROX	SS5_PROX:INTRON	AMMECR1L	ENSG00000144233.11	ENST00000679797.1:ENST00000681549.1:ENST00000272647.10:ENST00000393001.1:ENST00000681313.1:ENST00000679574.1:ENST00000680246.1:ENST00000680886.1:ENST00000680045.1:ENST00000680145.1:ENST00000681844.1:ENST00000680603.1:ENST00000680431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr22	37513323	37513422	10032717	0	-	0.535354	(0.526,0.57]	chr22	999779	12	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr5	1624089	1624189	3414938	0	-	0.55	(0.526,0.57]	chr5	314328	210	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	11	2	4.38241	4.538015	4.69362	0.00101891	1.98837e-4	0.0276375	0.00746609
chr1	151079657	151079757	296517	0	+	0.53	(0.526,0.57]	chr1	31627	61	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr1	227277935	227278035	876807	0	-	0.56	(0.526,0.57]	chr1	97605	234	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr10	11853314	11853414	5789747	0	+	0.57	(0.526,0.57]	chr10	521425	7	INTRON	INTRON	PROSER2	ENSG00000148426.13	ENST00000474155.1:ENST00000277570.10:ENST00000622831.4:ENST00000444604.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr17	66356453	66356553	8779450	0	+	0.53	(0.526,0.57]	chr17	835622	165	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr3	49962856	49962941	1868119	0	+	0.529412	(0.526,0.57]	chr3	189752	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000493652.1:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000433811.1:ENST00000491874.5:ENST00000488807.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr6	38137671	38137771	3773770	0	+	0.56	(0.526,0.57]	chr6	345102	206	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000373389.5:ENST00000440482.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr7	80526913	80527013	4450652	0	+	0.54	(0.526,0.57]	chr7	399984	16	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5:ENST00000648416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr7	112006830	112006930	4822213	0	-	0.55	(0.526,0.57]	chr7	432278	23	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.44169	4.53778	4.63387	8.21639e-4	2.57391e-4	0.0238903	0.00911512
chr3	71311927	71312027	2339201	0	-	0.5	(0.49,0.526]	chr3	226550	60	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.72059	4.537755	5.35492	2.73826e-4	1.0002e-6	0.00975361	7.00342e-5
chr1	51620518	51620618	143151	0	+	0.41	(0.392,0.424]	chr1	17589	29	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr1	100956328	100956428	247172	0	+	0.42	(0.392,0.424]	chr1	24948	341	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr1	117435136	117435235	271996	0	+	0.393939	(0.392,0.424]	chr1	28097	141	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr1	246103516	246103616	914489	0	-	0.42	(0.392,0.424]	chr1	100951	72	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr11	120480606	120480682	6514009	0	+	0.421053	(0.392,0.424]	chr11	590082	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr12	65421963	65422063	6942344	0	+	0.41	(0.392,0.424]	chr12	635375	526	INTRON	INTRON	MSRB3	ENSG00000174099.12	ENST00000355192.8:ENST00000541897.5:ENST00000308259.10:ENST00000540804.5:ENST00000535664.5:ENST00000541189.5:ENST00000642411.1:ENST00000538045.5:ENST00000614640.4:ENST00000535239.5:ENST00000646299.1:ENST00000642404.1:ENST00000446731.2:ENST00000647481.1:ENST00000535143.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr15	76441591	76441691	8243169	0	-	0.4	(0.392,0.424]	chr15	765583	69	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000569395.5:ENST00000568428.5:ENST00000564757.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr16	27652118	27652217	8361206	0	+	0.40404	(0.392,0.424]	chr16	779583	30	INTRON	INTRON	KATNIP	ENSG00000047578.14	ENST00000261588.10:ENST00000568258.5:ENST00000565672.5:ENST00000564749.5:ENST00000567894.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr17	60291982	60292082	8975788	0	-	0.4	(0.392,0.424]	chr17	864654	29	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr2	37036060	37036159	1416029	0	-	0.393939	(0.392,0.424]	chr2	147175	29	INTRON	INTRON	HEATR5B	ENSG00000008869.12	ENST00000233099.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr2	113727715	113727814	1551341	0	-	0.414141	(0.392,0.424]	chr2	160872	18	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000470204.2:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr2	233266855	233266953	1343549	0	+	0.408163	(0.392,0.424]	chr2	138856	3	INTRON	INTRON	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000444735.5:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000419681.5:ENST00000479942.5:ENST00000474148.5:ENST00000417017.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr21	31506430	31506530	9854576	0	-	0.42	(0.392,0.424]	chr21	977974	420	INTRON	INTRON	TIAM1	ENSG00000156299.14	ENST00000286827.7:ENST00000469412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr4	87023799	87023899	2681431	0	+	0.41	(0.392,0.424]	chr4	255323	160	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr4	108145888	108145987	2987921	0	-	0.393939	(0.392,0.424]	chr4	279858	563	INTRON	INTRON	LEF1	ENSG00000138795.10	ENST00000379951.6:ENST00000265165.6:ENST00000510135.5:ENST00000438313.6:ENST00000509428.5:ENST00000510624.5:ENST00000506680.5:ENST00000504775.5:ENST00000504950.5:ENST00000515500.5:ENST00000510717.5:ENST00000512172.1:ENST00000505293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr6	25365162	25365261	4024459	0	-	0.40404	(0.392,0.424]	chr6	364195	140	INTRON	INTRON	CMAHP	ENSG00000168405.18	ENST00000643807.1:ENST00000647050.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr9	21884955	21885054	5363639	0	+	0.414141	(0.392,0.424]	chr9	478720	180	INTRON	INTRON	MTAP	ENSG00000099810.21	ENST00000580900.5:ENST00000577563.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr9	99961354	99961454	5449877	0	+	0.41	(0.392,0.424]	chr9	486739	8	INTRON	INTRON	STX17	ENSG00000136874.11	ENST00000259400.11:ENST00000529340.5:ENST00000524405.5:ENST00000525640.5:ENST00000534052.1:ENST00000525847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr9	116193898	116193998	5473812	0	+	0.42	(0.392,0.424]	chr9	489089	53	INTRON	INTRON	PAPPA	ENSG00000182752.10	ENST00000328252.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.15239	4.537705	4.92302	0.00572894	1.45314e-4	0.105396	0.00569484
chr18	12445160	12445259	9063841	0	+	0.444444	(0.424,0.459]	chr18	875927	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000267199	ENSG00000267199.1	ENST00000588197.1:ENST00000589795.1	lncRNA	lncRNA	lncRNA	lncRNA	3	25	2	3.98062	4.537380000000001	5.09414	2.41657e-6	4.02077e-10	1.5318e-4	4.98364e-8
chr1	53933425	53933525	625127	0	-	0.41	(0.392,0.424]	chr1	69649	29	INTRON	INTRON	HSPB11	ENSG00000081870.12	ENST00000371378.6:ENST00000194214.10:ENST00000371377.3:ENST00000371376.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr1	95133475	95133575	238802	0	+	0.41	(0.392,0.424]	chr1	24010	119	INTRON	INTRON	TLCD4	ENSG00000152078.10	ENST00000370203.9:ENST00000456991.5:ENST00000455656.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr1	96766020	96766119	240056	0	+	0.424242	(0.392,0.424]	chr1	24109	142	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr11	43413004	43413103	6379556	0	+	0.424242	(0.392,0.424]	chr11	571495	51	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr12	49690022	49690121	7161189	0	-	0.424242	(0.392,0.424]	chr12	658671	10	INTRON	INTRON	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000550424.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr12	63797811	63797911	6932500	0	+	0.4	(0.392,0.424]	chr12	634593	74	INTRON	INTRON	RXYLT1	ENSG00000118600.13	ENST00000690060.1:ENST00000685296.1:ENST00000543342.5:ENST00000687087.1:ENST00000261234.11:ENST00000693579.1:ENST00000691840.1:ENST00000537982.5:ENST00000537373.6:ENST00000692910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr12	93385122	93385162	6987505	0	+	0.4	(0.392,0.424]	chr12	638156	1	UTR5	UTR5:EXON_MRNA:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr14	102365605	102365704	7758347	0	+	0.393939	(0.392,0.424]	chr14	712441	21	INTRON	INTRON	TECPR2	ENSG00000196663.16	ENST00000359520.12:ENST00000561228.1:ENST00000558678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr18	46960200	46960300	9114517	0	+	0.42	(0.392,0.424]	chr18	879846	71	INTRON	INTRON	KATNAL2	ENSG00000167216.19	ENST00000592005.5:ENST00000687039.1:ENST00000693648.1:ENST00000245121.10:ENST00000683218.1:ENST00000591522.2:ENST00000687291.1:ENST00000692939.1:ENST00000685570.1:ENST00000690453.1:ENST00000688563.1:ENST00000689545.1:ENST00000686215.1:ENST00000688194.1:ENST00000688659.1:ENST00000685696.1:ENST00000588433.6:ENST00000585383.2:ENST00000585469.5:ENST00000356157.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr2	181001636	181001736	1226975	0	+	0.4	(0.392,0.424]	chr2	128500	117	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr2	226878810	226878910	1322331	0	+	0.41	(0.392,0.424]	chr2	136732	111	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr22	28482668	28482768	10006130	0	-	0.41	(0.392,0.424]	chr22	996542	397	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr3	67583864	67583964	2330014	0	-	0.4	(0.392,0.424]	chr3	225855	543	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr4	26686246	26686346	2592051	0	+	0.42	(0.392,0.424]	chr4	248730	21	INTRON	INTRON	TBC1D19	ENSG00000109680.11	ENST00000512840.5:ENST00000264866.9:ENST00000502873.5:ENST00000511789.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr5	116174162	116174262	3286573	0	+	0.41	(0.392,0.424]	chr5	302259	396	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr5	132352831	132352931	3597309	0	-	0.4	(0.392,0.424]	chr5	326591	2	SS3_PROX	SS3_PROX:INTRON	MIR3936HG	ENSG00000233006.8	ENST00000621103.4:ENST00000669845.1:ENST00000616965.1:ENST00000649993.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chrX	68300095	68300194	10367195	0	-	0.393939	(0.392,0.424]	chrX	1029254	6	INTRON	INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000679914.1:ENST00000680503.1:ENST00000486068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.21741	4.536975	4.85654	0.00496616	1.84333e-4	0.0964485	0.00688171
chr1	205739190	205739290	846225	0	-	0.4	(0.392,0.424]	chr1	94185	92	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	4.17862	4.535945	4.89327	4.01331e-5	3.77123e-8	0.00187621	3.4456e-6
chr12	31661840	31661896	6863807	0	+	0.482143	(0.459,0.49]	chr12	626830	1	UTR5	UTR5:EXON_MRNA	ETFBKMT	ENSG00000139160.13	ENST00000412352.6:ENST00000395763.7:ENST00000357721.3:ENST00000538463.5:ENST00000539633.1	protein_coding	protein_coding	protein_coding	protein_coding	28	197	2	4.49862	4.535925	4.57323	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	47786066	47786165	1024979	0	+	0.494949	(0.49,0.526]	chr2	110228	12	INTRON	INTRON	MSH6	ENSG00000116062.18	ENST00000652107.1:ENST00000445503.5:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	4.03016	4.535690000000001	5.04122	6.36415e-11	9.19786e-12	8.81514e-9	1.42434e-9
chr1	41167796	41167896	580690	0	-	0.37	(0.36,0.392]	chr1	65835	49	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	40	185	2	4.47688	4.535605	4.59433	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	89717301	89717398	5212631	0	-	0.42268	(0.392,0.424]	chr8	466506	24	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1	lncRNA	lncRNA	lncRNA	lncRNA	4	28	2	4.18617	4.5352999999999994	4.88443	3.41477e-7	1.17264e-11	2.62392e-5	1.79773e-9
chr14	70339871	70339970	7860107	0	-	0.414141	(0.392,0.424]	chr14	723898	103	INTRON	INTRON	COX16	ENSG00000133983.16	ENST00000389912.7:ENST00000557612.5:ENST00000555601.1:ENST00000555276.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	23	2	2.91247	4.535254999999999	6.15804	2.63771e-5	6.43194e-10	0.00130428	7.74888e-8
chr5	277638	277738	3107024	0	+	0.57	(0.526,0.57]	chr5	287746	8	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	3.80992	4.534895000000001	5.25987	1.14789e-4	2.82947e-6	0.00467969	1.75466e-4
chr5	14185558	14185658	3122128	0	+	0.55	(0.526,0.57]	chr5	289176	12	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	3.97495	4.5348	5.09465	3.21576e-5	1.16684e-5	0.00156852	6.16746e-4
chr16	84743934	84744033	8468737	0	+	0.434343	(0.424,0.459]	chr16	791822	32	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	4.01593	4.533659999999999	5.05139	8.03177e-5	4.27641e-5	0.00342222	0.00199812
chr18	21412481	21412581	9072917	0	+	0.31	[0,0.32]	chr18	876636	81	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10:ENST00000580732.6:ENST00000578368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	4.34135	4.533390000000001	4.72543	1.35488e-6	2.8746e-7	9.17479e-5	2.23534e-5
chr4	75749273	75749373	2648773	0	+	0.31	[0,0.32]	chr4	253214	240	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	14	60	2	4.25999	4.5328800000000005	4.80577	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	66942692	66942791	195040	0	+	0.343434	(0.32,0.36]	chr1	20917	21	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	4.38184	4.532865	4.68389	1.66191e-5	1.67087e-6	8.55383e-4	1.09706e-4
chr1	211949289	211949388	852464	0	-	0.383838	(0.36,0.392]	chr1	94944	22	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	38	2	4.33311	4.532864999999999	4.73262	1.49313e-11	1e-12	2.2473e-9	1.73382e-10
chr17	60292282	60292382	8975791	0	-	0.34	(0.32,0.36]	chr17	864654	32	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	4.49493	4.532725	4.57052	1.01106e-5	2.95142e-6	5.51435e-4	1.84947e-4
chr2	99175309	99175408	1522888	0	-	0.353535	(0.32,0.36]	chr2	158602	9	INTRON	INTRON	MITD1	ENSG00000158411.11	ENST00000422537.6:ENST00000289359.6:ENST00000413710.2:ENST00000464685.1:ENST00000409107.1:ENST00000466880.5:ENST00000438121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	4.49493	4.532725	4.57052	1.01106e-5	2.95142e-6	5.51435e-4	1.84947e-4
chr1	86872488	86872587	681038	0	-	0.434343	(0.424,0.459]	chr1	74035	40	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.01346	4.532425	5.05139	0.00778514	4.27641e-5	0.130982	0.00199812
chr12	64745324	64745407	7189215	0	-	0.457831	(0.424,0.459]	chr12	664027	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.01346	4.532425	5.05139	0.00778514	4.27641e-5	0.130982	0.00199812
chr13	36821450	36821549	7361630	0	+	0.444444	(0.424,0.459]	chr13	680128	11	INTRON	INTRON	RFXAP	ENSG00000133111.4	ENST00000255476.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.01346	4.532425	5.05139	0.00778514	4.27641e-5	0.130982	0.00199812
chr21	26960128	26960227	9849391	0	-	0.434343	(0.424,0.459]	chr21	977464	49	INTRON	INTRON	ADAMTS5	ENSG00000154736.6	ENST00000284987.6:ENST00000652031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.01346	4.532425	5.05139	0.00778514	4.27641e-5	0.130982	0.00199812
chrX	107858900	107859000	10196549	0	+	0.45	(0.424,0.459]	chrX	1015557	38	INTRON	INTRON	MID2	ENSG00000080561.14	ENST00000262843.11:ENST00000443968.2	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.01346	4.532425	5.05139	0.00778514	4.27641e-5	0.130982	0.00199812
chr8	93736116	93736213	5219309	0	-	0.42268	(0.392,0.424]	chr8	466967	28	CDS	CDS:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	53	260	2	4.12384	4.532235	4.94063	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	149531554	149531653	2469664	0	-	0.525253	(0.49,0.526]	chr3	236972	32	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	78	2	4.47315	4.531685	4.59022	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	234408750	234408850	888834	0	-	0.45	(0.424,0.459]	chr1	98920	9	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000481183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr11	43740012	43740112	6380995	0	+	0.45	(0.424,0.459]	chr11	571585	155	INTRON	INTRON	HSD17B12	ENSG00000149084.13	ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1:ENST00000527213.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr14	89958597	89958697	7734955	0	+	0.43	(0.424,0.459]	chr14	709794	2	SS5_PROX	SS5_PROX:INTRON	TDP1	ENSG00000042088.14	ENST00000554976.5:ENST00000393452.7:ENST00000554180.5:ENST00000335725.9:ENST00000393454.6:ENST00000553617.5:ENST00000555565.5:ENST00000556867.1:ENST00000553527.1:ENST00000553989.1:ENST00000545686.6:ENST00000555178.5:ENST00000556498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr15	41273772	41273872	7949712	0	+	0.45	(0.424,0.459]	chr15	734600	15	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr2	74054695	74054795	1079047	0	+	0.43	(0.424,0.459]	chr2	114875	59	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8:ENST00000475405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr21	42008057	42008147	9884701	0	-	0.433333	(0.424,0.459]	chr21	980443	1	INTRON	INTRON	ZBTB21	ENSG00000173276.14	ENST00000310826.10:ENST00000398505.7:ENST00000398511.3:ENST00000398499.5:ENST00000465968.5:ENST00000398497.2:ENST00000449949.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr4	173099705	173099804	3089360	0	-	0.434343	(0.424,0.459]	chr4	286003	38	INTRON	INTRON	GALNT7-DT	ENSG00000245213.7	ENST00000656803.1:ENST00000663396.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr4	183852530	183852630	2805651	0	+	0.43	(0.424,0.459]	chr4	265317	541	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr5	146137147	146137246	3633976	0	-	0.444444	(0.424,0.459]	chr5	330063	11	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr6	165846587	165846687	4269212	0	-	0.44	(0.424,0.459]	chr6	386909	175	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr8	24917349	24917445	4949501	0	+	0.458333	(0.424,0.459]	chr8	443310	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NEFM	ENSG00000104722.14	ENST00000221166.10:ENST00000518131.5:ENST00000437366.2:ENST00000521540.1:ENST00000433454.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chrX	24008692	24008792	10296494	0	-	0.45	(0.424,0.459]	chrX	1024046	16	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.09426	4.531175	4.96809	0.00651192	6.10851e-5	0.116758	0.0027377
chr8	130313941	130314041	5276754	0	-	0.51	(0.49,0.526]	chr8	471484	670	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	4.35534	4.53026	4.70518	1.32027e-6	1.2507e-8	8.96115e-5	1.25541e-6
chr14	45133939	45134016	7816374	0	-	0.584416	(0.57,0.629]	chr14	719365	1	SS5_PROX	SS5_PROX:INTRON	FKBP3	ENSG00000100442.11	ENST00000396062.4:ENST00000216330.7:ENST00000557324.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	63	2	4.1094	4.52974	4.95008	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	129109074	129109174	6777172	0	-	0.35	(0.32,0.36]	chr11	618709	150	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000524655.5:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.02125	4.52937	5.03749	3.53532e-4	9.65678e-5	0.0122629	0.00399919
chr5	87276481	87276581	3245901	0	+	0.34	(0.32,0.36]	chr5	299435	68	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	4.02125	4.52937	5.03749	3.53532e-4	9.65678e-5	0.0122629	0.00399919
chr19	52298610	52298709	9381127	0	+	0.393939	(0.392,0.424]	chr19	914814	10	INTRON	INTRON	ZNF480	ENSG00000198464.14	ENST00000595962.6:ENST00000468240.6:ENST00000490272.1:ENST00000334564.11:ENST00000598016.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	3.7305	4.529085	5.32767	5.95442e-6	1.31505e-7	3.4453e-4	1.09942e-5
chr22	32478115	32478196	9935876	0	+	0.481481	(0.459,0.49]	chr22	987180	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1:ENST00000465418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	143	2	4.19862	4.52867	4.85872	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	188296340	188296440	2132428	0	+	0.53	(0.526,0.57]	chr3	209616	558	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.38241	4.52671	4.67101	0.00101891	2.77771e-8	0.0276375	2.62893e-6
chr12	57164722	57164820	6923421	0	+	0.479592	(0.459,0.49]	chr12	632867	4	EXON_MRNA	EXON_MRNA:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000556830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.81712	4.5260750000000005	5.23503	0.0120499	5.25256e-6	0.184357	3.11102e-4
chr15	73193814	73193914	8037796	0	+	0.46	(0.459,0.49]	chr15	742387	150	INTRON	INTRON	NEO1	ENSG00000067141.17	ENST00000339362.9:ENST00000261908.11:ENST00000560262.5:ENST00000558964.5:ENST00000560328.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.81712	4.5260750000000005	5.23503	0.0120499	5.25256e-6	0.184357	3.11102e-4
chr5	34193507	34193606	3437412	0	-	0.474747	(0.459,0.49]	chr5	316051	41	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	11	2	3.81712	4.5260750000000005	5.23503	0.0120499	5.25256e-6	0.184357	3.11102e-4
chr6	149009174	149009273	3923036	0	+	0.313131	[0,0.32]	chr6	357433	37	INTRON	INTRON	UST	ENSG00000111962.8	ENST00000367463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.61847	4.52602	5.43357	2.40709e-4	8.40147e-6	0.00878409	4.71048e-4
chr11	71892994	71893094	6635682	0	-	0.39	(0.36,0.392]	chr11	607963	80	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	4.20207	4.5258	4.84953	1.31711e-8	3.76228e-11	1.30852e-6	5.3683e-9
chr13	30465866	30465938	7477886	0	-	0.555556	(0.526,0.57]	chr13	688927	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	4.52211	4.525449999999999	4.52879	6.85682e-11	4.3785e-11	9.42121e-9	6.17372e-9
chr17	46524483	46524583	8728044	0	+	0.49	(0.459,0.49]	chr17	829286	2	INTRON	INTRON	LRRC37A2	ENSG00000238083.8	ENST00000576629.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.88247	4.524595	5.16672	0.0104144	7.74288e-6	0.170122	4.39068e-4
chr19	16452916	16453016	9451559	0	-	0.47	(0.459,0.49]	chr19	928896	103	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.88247	4.524595	5.16672	0.0104144	7.74288e-6	0.170122	4.39068e-4
chr4	54021505	54021605	2905038	0	-	0.47	(0.459,0.49]	chr4	273081	70	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.88247	4.524595	5.16672	0.0104144	7.74288e-6	0.170122	4.39068e-4
chr6	107190325	107190425	4151586	0	-	0.46	(0.459,0.49]	chr6	378216	352	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.88247	4.524595	5.16672	0.0104144	7.74288e-6	0.170122	4.39068e-4
chr12	43909515	43909615	6883481	0	+	0.33	(0.32,0.36]	chr12	628125	642	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.90902	4.524295	5.13957	5.03152e-4	6.71414e-5	0.0161742	0.00291649
chr17	62041881	62041981	8980164	0	-	0.34	(0.32,0.36]	chr17	865132	59	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.90902	4.524295	5.13957	5.03152e-4	6.71414e-5	0.0161742	0.00291649
chr4	54285901	54285963	2620754	0	+	0.483871	(0.459,0.49]	chr4	251282	2	CDS	CDS:EXON_MRNA	PDGFRA	ENSG00000134853.12	ENST00000257290.10	protein_coding	protein_coding	protein_coding	protein_coding	14	102	2	4.26782	4.523225	4.77863	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	63815509	63815609	6409843	0	+	0.47	(0.459,0.49]	chr11	575589	13	INTRON	INTRON	SPINDOC	ENSG00000168005.9	ENST00000294244.9	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	4.20902	4.52321	4.8374	2.26047e-8	7.08953e-9	2.15233e-6	7.39732e-7
chr16	78399037	78399137	8440610	0	+	0.54	(0.526,0.57]	chr16	790790	106	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000566662.5:ENST00000408984.7:ENST00000562639.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	4.37952	4.522125	4.66473	5.61359e-10	4.85278e-12	6.8413e-8	7.7613e-10
chr1	235110215	235110312	889675	0	-	0.556701	(0.526,0.57]	chr1	99071	10	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	4.45569	4.522065	4.58844	2.55754e-10	1.21635e-11	3.25421e-8	1.86497e-9
chr4	1956050	1956119	2545484	0	+	0.449275	(0.424,0.459]	chr4	244656	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	37	209	2	4.43459	4.52149	4.60839	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	336234	336334	9690480	0	-	0.35	(0.32,0.36]	chr20	958281	111	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	14	64	2	4.09541	4.52134	4.94727	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	183312868	183312968	2804310	0	+	0.54	(0.526,0.57]	chr4	265114	4	SS5_PROX	SS5_PROX:INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5:ENST00000508747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	3.69524	4.52132	5.3474	3.03531e-4	1.05485e-6	0.0107298	7.33447e-5
chr10	101791939	101792038	6238120	0	-	0.373737	(0.36,0.392]	chr10	558244	1	INTRON	INTRON	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	4.38376	4.520244999999999	4.65673	7.48315e-4	1.64803e-5	0.0220209	8.48507e-4
chr19	50489282	50489381	9378946	0	+	0.484848	(0.459,0.49]	chr19	914400	67	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	4.17834	4.520145	4.86195	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	131959686	131959785	7057132	0	+	0.494949	(0.49,0.526]	chr12	647142	93	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000332482.8:ENST00000333577.8	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	4.4874	4.520085	4.55277	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	51694955	51695055	9379668	0	+	0.56	(0.526,0.57]	chr19	914565	4	SS5_PROX	SS5_PROX:INTRON	SPACA6	ENSG00000182310.15	ENST00000637797.2:ENST00000576093.5:ENST00000573266.5:ENST00000571328.1:ENST00000574072.5:ENST00000576494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	49	2	4.45569	4.51976	4.58383	2.55754e-10	1e-12	3.25421e-8	1.73382e-10
chr12	57418054	57418154	7182100	0	-	0.39	(0.36,0.392]	chr12	663024	219	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.59992	4.51964	5.43936	0.00266188	3.42448e-6	0.0631592	2.10826e-4
chr6	5240225	5240325	3996986	0	-	0.38	(0.36,0.392]	chr6	362066	3	SS5_PROX	SS5_PROX:INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000480566.5:ENST00000500576.4:ENST00000455814.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.59992	4.51964	5.43936	0.00266188	3.42448e-6	0.0631592	2.10826e-4
chr9	18887030	18887130	5357124	0	+	0.39	(0.36,0.392]	chr9	478063	567	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1:ENST00000380548.9:ENST00000380559.7:ENST00000542621.5:ENST00000380545.9:ENST00000388710.8:ENST00000380538.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.59992	4.51964	5.43936	0.00266188	3.42448e-6	0.0631592	2.10826e-4
chr1	8875017	8875107	512273	0	-	0.477778	(0.459,0.49]	chr1	55027	1	SS3_PROX	SS3_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr13	28151681	28151781	7340855	0	+	0.47	(0.459,0.49]	chr13	678583	122	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr17	4851819	4851919	8634691	0	+	0.47	(0.459,0.49]	chr17	815446	178	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr18	46941965	46942065	9114328	0	+	0.47	(0.459,0.49]	chr18	879817	237	INTRON	INTRON	KATNAL2	ENSG00000167216.19	ENST00000592005.5:ENST00000687039.1:ENST00000693648.1:ENST00000245121.10:ENST00000683218.1:ENST00000591522.2:ENST00000687291.1:ENST00000692939.1:ENST00000685570.1:ENST00000690453.1:ENST00000688563.1:ENST00000689545.1:ENST00000686215.1:ENST00000688194.1:ENST00000688659.1:ENST00000685696.1:ENST00000685358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr18	74647917	74648017	9149268	0	+	0.47	(0.459,0.49]	chr18	882036	64	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr2	32398774	32398874	979214	0	+	0.49	(0.459,0.49]	chr2	106885	28	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000466527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr22	40083869	40083969	9946706	0	+	0.49	(0.459,0.49]	chr22	989390	379	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr5	82036919	82037019	3238362	0	+	0.48	(0.459,0.49]	chr5	299127	489	INTRON	INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000355178.8:ENST00000458350.7:ENST00000513443.5:ENST00000504770.5:ENST00000513634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr6	17659565	17659664	4013028	0	-	0.474747	(0.459,0.49]	chr6	363124	73	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr7	95433658	95433758	4778865	0	-	0.48	(0.459,0.49]	chr7	427972	87	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5:ENST00000471883.1:ENST00000469716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chrX	63379884	63379984	10355704	0	-	0.47	(0.459,0.49]	chrX	1028584	287	INTRON	INTRON	LINC01278	ENSG00000235437.9	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5	lncRNA	lncRNA	lncRNA	lncRNA	0	10	2	4.20634	4.519525	4.83271	0.00276656	1.09213e-4	0.0641652	0.00442392
chr20	63966040	63966140	9780955	0	-	0.58	(0.57,0.629]	chr20	970130	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	4.37105	4.519065	4.66708	4.54233e-7	7.1397e-9	3.38977e-5	7.41358e-7
chr1	32027907	32028006	96158	0	+	0.484848	(0.459,0.49]	chr1	10618	132	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr1	36232047	36232147	108630	0	+	0.49	(0.459,0.49]	chr1	12451	62	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr1	93178157	93178257	694835	0	-	0.46	(0.459,0.49]	chr1	75270	151	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr1	236802827	236802927	463331	0	+	0.48	(0.459,0.49]	chr1	49987	67	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr11	47996106	47996206	6395148	0	+	0.47	(0.459,0.49]	chr11	573261	147	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr12	49629844	49629944	6905408	0	+	0.47	(0.459,0.49]	chr12	629372	53	INTRON	INTRON	PRPF40B	ENSG00000110844.14	ENST00000551063.5:ENST00000551418.5:ENST00000548825.7:ENST00000548436.5:ENST00000261897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr15	35531575	35531675	8131679	0	-	0.47	(0.459,0.49]	chr15	752291	89	INTRON	INTRON	DPH6	ENSG00000134146.12	ENST00000256538.9:ENST00000561411.1:ENST00000559784.5:ENST00000559585.5:ENST00000440392.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr16	29584408	29584508	8542507	0	-	0.48	(0.459,0.49]	chr16	803599	178	INTRON	INTRON	SMG1P2	ENSG00000205534.6	ENST00000566127.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr16	74330068	74330168	8598659	0	-	0.46	(0.459,0.49]	chr16	810400	168	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr17	12917588	12917686	8655466	0	+	0.489796	(0.459,0.49]	chr17	818515	12	INTRON	INTRON	ARHGAP44	ENSG00000006740.18	ENST00000379672.10:ENST00000340825.7:ENST00000580768.5:ENST00000262444.13:ENST00000544416.6:ENST00000578442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr2	63468218	63468318	1464961	0	-	0.48	(0.459,0.49]	chr2	152090	251	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409199.5:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000493315.1:ENST00000418148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr2	203332421	203332521	1273351	0	+	0.49	(0.459,0.49]	chr2	132718	34	INTRON	INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000447762.5:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000425253.1:ENST00000424558.5:ENST00000413635.5:ENST00000431886.5:ENST00000444584.1:ENST00000417864.5:ENST00000494215.1:ENST00000376135.5:ENST00000422511.6:ENST00000261016.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr3	38386226	38386325	1837464	0	+	0.484848	(0.459,0.49]	chr3	185975	65	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr7	133488390	133488490	4553131	0	+	0.46	(0.459,0.49]	chr7	409402	43	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.27284	4.518925	4.76501	0.00227779	1.46149e-4	0.0552099	0.00564049
chr12	6391386	6391476	6810929	0	+	0.5	(0.49,0.526]	chr12	621659	6	UTR3	UTR3:EXON_MRNA	LTBR	ENSG00000111321.11	ENST00000228918.9:ENST00000441074.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	3.42424	4.518155	5.61207	8.36246e-5	6.35974e-8	0.00356417	5.62451e-6
chr4	73257875	73257975	2917138	0	-	0.61	(0.57,0.629]	chr4	274543	2	SS5_PROX	SS5_PROX:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.59974	4.517525	5.43531	8.13785e-6	2.83977e-7	4.60466e-4	2.21461e-5
chr14	68478897	68478997	7675223	0	+	0.42	(0.392,0.424]	chr14	705809	9	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000557045.5:ENST00000554183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	4.21741	4.517495	4.81758	0.00496616	6.29448e-8	0.0964485	5.585e-6
chrX	136877614	136877714	10448045	0	-	0.32	[0,0.32]	chrX	1035625	3	SS5_PROX	SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	3.26461	4.517025	5.76944	4.77035e-4	2.56854e-7	0.0156573	2.02856e-5
chr10	86761716	86761816	5922593	0	+	0.49	(0.459,0.49]	chr10	530897	44	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	4.4153	4.516995	4.61869	8.98032e-7	1.26997e-7	6.37943e-5	1.06312e-5
chr9	65723429	65723529	5385620	0	+	0.38	(0.36,0.392]	chr9	481211	3	SS5_PROX	SS5_PROX:INTRON	CBWD5	ENSG00000147996.17	ENST00000377392.9:ENST00000377389.5:ENST00000476161.5:ENST00000497250.5:ENST00000480229.5:ENST00000430059.6:ENST00000382405.8:ENST00000429800.6:ENST00000486221.5:ENST00000465474.5:ENST00000377395.8:ENST00000476797.5:ENST00000489273.1:ENST00000485088.5:ENST00000468066.5:ENST00000461932.5:ENST00000480819.6:ENST00000486191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.52068	4.516365	5.51205	0.00324516	2.39077e-6	0.0730386	1.5204e-4
chr17	57662813	57662912	8752545	0	+	0.575758	(0.57,0.629]	chr17	833099	67	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5:ENST00000675379.1:ENST00000675127.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	4.00133	4.516335	5.03134	1.78261e-5	1.22122e-5	9.13271e-4	6.58806e-4
chr10	34642182	34642282	6111341	0	-	0.59	(0.57,0.629]	chr10	547481	1247	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.85355	4.516235	5.17892	5.98045e-5	3.48382e-6	0.00266913	2.13641e-4
chr20	36125627	36125727	9639525	0	+	0.58	(0.57,0.629]	chr20	951889	1	SS5_PROX	SS5_PROX:INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5:ENST00000427533.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.85355	4.516235	5.17892	5.98045e-5	3.48382e-6	0.00266913	2.13641e-4
chr7	116783303	116783386	4521709	0	+	0.373494	(0.36,0.392]	chr7	407198	1	CDS	CDS:EXON_MRNA	MET	ENSG00000105976.16	ENST00000318493.11:ENST00000397752.8	protein_coding	protein_coding	protein_coding	protein_coding	68	306	2	4.44524	4.5160599999999995	4.58688	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	84992541	84992641	8068442	0	+	0.52	(0.49,0.526]	chr15	745864	98	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	4.14459	4.5154700000000005	4.88635	2.30178e-8	1.46599e-9	2.18887e-6	1.70181e-7
chr19	49450581	49450681	9525155	0	-	0.54	(0.526,0.57]	chr19	941078	4	SS5_PROX	SS5_PROX:INTRON	PIH1D1	ENSG00000104872.11	ENST00000262265.10:ENST00000596916.5:ENST00000596049.5:ENST00000601807.5:ENST00000601053.5:ENST00000595516.5:ENST00000599366.5:ENST00000597415.5:ENST00000593900.5:ENST00000595074.1:ENST00000599791.1:ENST00000601825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	3.01669	4.51441	6.01213	2.67638e-5	2.82174e-10	0.00131425	3.5327e-8
chr16	81040801	81040893	8449115	0	+	0.380435	(0.36,0.392]	chr16	790939	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ATMIN	ENSG00000166454.10	ENST00000299575.5:ENST00000562969.1:ENST00000539819.5:ENST00000564241.5:ENST00000565237.1:ENST00000566488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	23	2	4.0035	4.513895	5.02429	1.21509e-7	1.54207e-8	1.01303e-5	1.51982e-6
chr16	31189484	31189564	8372558	0	+	0.425	(0.424,0.459]	chr16	782210	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2:ENST00000564766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	78	2	4.50729	4.513505	4.51972	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	144517784	144517845	5309666	0	-	0.803279	(0.629,1]	chr8	475181	1	UTR5	UTR5:EXON_MRNA	RECQL4	ENSG00000160957.15	ENST00000621189.4:ENST00000617875.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	4.37093	4.513335	4.65574	6.32275e-8	1.50585e-9	5.60675e-6	1.73555e-7
chr13	75348369	75348469	7541735	0	-	0.46	(0.459,0.49]	chr13	693354	64	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000648194.1:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.85937	4.513045	5.16672	1.54766e-4	7.74288e-6	0.00599593	4.39068e-4
chr18	79145751	79145851	9156702	0	+	0.64	(0.629,1]	chr18	882393	15	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.8818	4.51249	5.14318	0.0064023	3.40591e-6	0.114061	2.08838e-4
chr1	227037379	227037477	874373	0	-	0.306122	[0,0.32]	chr1	97457	14	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.91509	4.51112	5.10715	7.53496e-5	3.31414e-5	0.00322158	0.00159339
chr1	120001230	120001329	740019	0	-	0.454545	(0.424,0.459]	chr1	79421	35	INTRON	INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7:ENST00000479412.2:ENST00000652302.1:ENST00000652264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	4.40599	4.51011	4.61423	0.00154565	4.85762e-7	0.0389999	3.605e-5
chr2	28308182	28308282	968090	0	+	0.5	(0.49,0.526]	chr2	105666	93	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	3.90591	4.510095	5.11428	1.13278e-10	1.6919e-11	1.49821e-8	2.5444e-9
chr9	133937511	133937610	5762511	0	-	0.525253	(0.49,0.526]	chr9	517661	93	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	3.33171	4.509435	5.68716	1.30693e-4	3.37299e-8	0.00517526	3.12343e-6
chr14	31301694	31301793	7794959	0	-	0.616162	(0.57,0.629]	chr14	717824	41	INTRON	INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.10805	4.50926	5.91047	3.71519e-4	8.81034e-10	0.0125602	1.04499e-7
chr1	180193712	180193812	368384	0	+	0.6	(0.57,0.629]	chr1	39941	1	SS3_PROX	SS3_PROX:INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	3.919	4.508965	5.09893	7.91825e-6	9.26807e-10	4.54299e-4	1.09765e-7
chr7	27152287	27152385	4665311	0	-	0.612245	(0.57,0.629]	chr7	419049	1	UTR5	UTR5:EXON_MRNA	HOXA3	ENSG00000105997.23	ENST00000612286.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.77045	4.50858	5.24671	9.07674e-5	2.15311e-6	0.00383949	1.3963e-4
chr1	999058	999158	491050	0	-	0.85	(0.629,1]	chr1	51977	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.12843	4.50836	4.88829	0.00233396	2.76563e-5	0.0563219	0.00135477
chr20	25468532	25468628	9720069	0	-	0.677083	(0.629,1]	chr20	962090	7	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.12843	4.50836	4.88829	0.00233396	2.76563e-5	0.0563219	0.00135477
chr1	29180747	29180846	556447	0	-	0.40404	(0.392,0.424]	chr1	61816	74	INTRON	INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	4.30978	4.5077750000000005	4.70577	7.17587e-8	3.16586e-10	6.27925e-6	3.98256e-8
chr16	72972887	72972987	8589196	0	-	0.43	(0.424,0.459]	chr16	810308	123	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.47733	4.507465	5.5376	2.01844e-4	4.83052e-7	0.00755335	3.58077e-5
chr1	245093003	245093103	487133	0	+	0.47	(0.459,0.49]	chr1	51405	13	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000366522.6:ENST00000447569.6:ENST00000487845.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	3.96686	4.5073550000000004	5.04785	5.54129e-5	2.39418e-5	0.00252909	0.00119556
chr11	118780428	118780524	6759009	0	-	0.489583	(0.459,0.49]	chr11	616799	3	INTRON	INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.96686	4.5073550000000004	5.04785	5.54129e-5	2.39418e-5	0.00252909	0.00119556
chr19	48252637	48252736	9521651	0	-	0.474747	(0.459,0.49]	chr19	940095	24	INTRON	INTRON	CARD8	ENSG00000105483.18	ENST00000517510.5:ENST00000651546.1:ENST00000519940.6:ENST00000520753.5:ENST00000521613.5:ENST00000522068.5:ENST00000522889.5:ENST00000519332.5:ENST00000520007.5:ENST00000521437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.96686	4.5073550000000004	5.04785	5.54129e-5	2.39418e-5	0.00252909	0.00119556
chr20	37193422	37193521	9643966	0	+	0.585859	(0.57,0.629]	chr20	952312	87	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.91553	4.50723	5.09893	0.00651627	7.91825e-6	0.114061	4.54299e-4
chr5	861157	861257	3412301	0	-	0.6	(0.57,0.629]	chr5	313792	23	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	13	2	3.91553	4.50723	5.09893	0.00651627	7.91825e-6	0.114061	4.54299e-4
chr7	128794517	128794602	4540638	0	+	0.623529	(0.57,0.629]	chr7	408242	3	CDS	CDS:EXON_MRNA	CCDC136	ENSG00000128596.17	ENST00000485998.6:ENST00000459946.5:ENST00000378685.8:ENST00000464832.5:ENST00000488925.1:ENST00000297788.9:ENST00000487361.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.91553	4.50723	5.09893	0.00651627	7.91825e-6	0.114061	4.54299e-4
chr10	34642482	34642582	6111344	0	-	0.52	(0.49,0.526]	chr10	547481	1250	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr16	2940880	2940976	8305504	0	+	0.510417	(0.49,0.526]	chr16	773277	4	INTRON	INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000344592.9:ENST00000570752.5:ENST00000574985.1:ENST00000571983.5:ENST00000575679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr16	67715166	67715266	8574606	0	-	0.5	(0.49,0.526]	chr16	808173	290	INTRON	INTRON	GFOD2	ENSG00000141098.13	ENST00000602377.1:ENST00000268797.12:ENST00000602279.2:ENST00000602496.1:ENST00000602855.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr16	85478298	85478398	8473920	0	+	0.5	(0.49,0.526]	chr16	792098	1190	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr2	69367525	69367624	1476374	0	-	0.50505	(0.49,0.526]	chr2	152769	35	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr20	35827568	35827668	9637917	0	+	0.51	(0.49,0.526]	chr20	951709	256	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr3	160371310	160371409	2479499	0	-	0.525253	(0.49,0.526]	chr3	237804	48	INTRON	INTRON	IFT80	ENSG00000068885.15	ENST00000326448.12:ENST00000483465.5:ENST00000496589.5:ENST00000487943.5:ENST00000478460.5:ENST00000465537.5:ENST00000484963.5:ENST00000475677.5:ENST00000472773.5:ENST00000498409.5:ENST00000468218.5:ENST00000478370.5:ENST00000486856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr7	148863503	148863603	4883479	0	-	0.5	(0.49,0.526]	chr7	437017	158	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.08493	4.50717	4.92941	0.00395081	4.32628e-5	0.0816719	0.00200309
chr1	172541857	172541956	347678	0	+	0.30303	[0,0.32]	chr1	38418	80	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5:ENST00000608566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	3.36243	4.50681	5.65119	0.00121149	1.20332e-6	0.0321344	8.2089e-5
chr1	26883366	26883464	549964	0	-	0.438776	(0.424,0.459]	chr1	60966	33	INTRON	INTRON	GPN2	ENSG00000142751.15	ENST00000374135.9:ENST00000374133.3:ENST00000477418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	4.29889	4.506565	4.71424	3.07139e-4	1.12945e-5	0.0105767	6.02727e-4
chr1	46709245	46709344	604320	0	-	0.454545	(0.424,0.459]	chr1	67931	8	INTRON	INTRON	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000674495.1:ENST00000674263.1:ENST00000459797.2:ENST00000674415.1:ENST00000484461.2:ENST00000674302.1:ENST00000674331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	4.29889	4.506565	4.71424	3.07139e-4	1.12945e-5	0.0105767	6.02727e-4
chr16	30721887	30721976	8370319	0	+	0.438202	(0.424,0.459]	chr16	781544	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.29889	4.506565	4.71424	3.07139e-4	1.12945e-5	0.0105767	6.02727e-4
chr3	127591689	127591789	2425993	0	-	0.48	(0.459,0.49]	chr3	232694	4	SS5_PROX	SS5_PROX:INTRON	TPRA1	ENSG00000163870.16	ENST00000648957.1:ENST00000490643.5:ENST00000462228.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	4.3608	4.506285	4.65177	2.23014e-6	5.56898e-8	1.43671e-4	5.02653e-6
chr1	151181329	151181429	765270	0	-	0.51	(0.49,0.526]	chr1	83325	28	INTRON	INTRON	VPS72	ENSG00000163159.15	ENST00000368892.9:ENST00000354473.4:ENST00000496809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15714	4.50626	4.85538	0.00319561	6.26806e-5	0.0699484	0.00277665
chr12	121642495	121642586	7035401	0	+	0.494505	(0.49,0.526]	chr12	644711	6	EXON_LNCRNA	EXON_LNCRNA	ORAI1	ENSG00000276045.3	ENST00000646827.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	11	2	4.15714	4.50626	4.85538	0.00319561	6.26806e-5	0.0699484	0.00277665
chr5	65954880	65954980	3195794	0	+	0.5	(0.49,0.526]	chr5	294720	277	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.15714	4.50626	4.85538	0.00319561	6.26806e-5	0.0699484	0.00277665
chr9	134787983	134788079	5525213	0	+	0.520833	(0.49,0.526]	chr9	496634	16	INTRON	INTRON	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.15714	4.50626	4.85538	0.00319561	6.26806e-5	0.0699484	0.00277665
chr16	4668412	4668512	8310136	0	+	0.37	(0.36,0.392]	chr16	774084	1	SS5_PROX	SS5_PROX:INTRON	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5:ENST00000590790.5:ENST00000593224.1:ENST00000587145.5:ENST00000590457.5:ENST00000588015.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	3.86419	4.5061599999999995	5.14813	1.86173e-5	2.64969e-9	9.46472e-4	2.94929e-7
chr22	50459951	50460020	10065745	0	-	0.623188	(0.57,0.629]	chr22	1004133	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SBF1	ENSG00000100241.22	ENST00000685180.1:ENST00000689129.1:ENST00000691959.1:ENST00000380817.8:ENST00000685390.1:ENST00000685809.1:ENST00000689981.1:ENST00000691233.1:ENST00000348911.11:ENST00000688124.1:ENST00000690990.1:ENST00000693440.1:ENST00000693052.1:ENST00000688848.1:ENST00000691345.1:ENST00000687016.1:ENST00000690369.1:ENST00000684986.1:ENST00000687704.1:ENST00000688985.1:ENST00000686222.1:ENST00000690590.1:ENST00000691792.1:ENST00000689177.1:ENST00000686427.1:ENST00000688066.1:ENST00000692844.1:ENST00000470434.2:ENST00000686801.1:ENST00000686191.1:ENST00000693499.1:ENST00000693289.1:ENST00000687861.1:ENST00000685386.1:ENST00000692006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.98068	4.50601	5.03134	0.0053729	1.22122e-5	0.100211	6.58806e-4
chr1	14872044	14872144	50193	0	+	0.44	(0.424,0.459]	chr1	4800	2725	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.64041	4.50598	5.37155	0.00115507	2.42251e-6	0.0316008	1.53938e-4
chr1	232463378	232463474	883776	0	-	0.4375	(0.424,0.459]	chr1	98571	11	INTRON	INTRON	SIPA1L2	ENSG00000116991.12	ENST00000674635.1:ENST00000674749.1:ENST00000366630.5:ENST00000675407.1:ENST00000676213.1:ENST00000675685.1:ENST00000674801.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.64041	4.50598	5.37155	0.00115507	2.42251e-6	0.0316008	1.53938e-4
chr2	69380787	69380887	1476512	0	-	0.43	(0.424,0.459]	chr2	152788	63	INTRON	INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1:ENST00000494201.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.64041	4.50598	5.37155	0.00115507	2.42251e-6	0.0316008	1.53938e-4
chr15	85023521	85023621	8068752	0	+	0.45	(0.424,0.459]	chr15	745864	408	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.23804	4.5044450000000005	5.77085	0.00649971	5.32819e-8	0.114061	4.72329e-6
chr4	54728065	54728121	2621614	0	+	0.410714	(0.392,0.424]	chr4	251402	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIT	ENSG00000157404.17	ENST00000689994.1:ENST00000687295.1:ENST00000687109.1:ENST00000692783.1:ENST00000412167.7:ENST00000686011.1:ENST00000687246.1:ENST00000288135.6:ENST00000690543.1:ENST00000689832.1:ENST00000692991.1:ENST00000685269.1:ENST00000687208.1:ENST00000690917.1:ENST00000687265.1:ENST00000691361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	196	948	2	4.4027	4.50393	4.60516	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	46580630	46580730	6600872	0	-	0.43	(0.424,0.459]	chr11	600433	312	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	4.35909	4.50392	4.64875	1.2237e-8	2.48943e-10	1.23286e-6	3.17004e-8
chr1	45692206	45692305	136993	0	+	0.464646	(0.459,0.49]	chr1	16848	7	INTRON	INTRON	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	4.38704	4.502865	4.61869	1.26997e-7	1.51757e-9	1.06312e-5	1.74447e-7
chr2	17773132	17773218	940354	0	+	0.232558	[0,0.32]	chr2	103469	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GEN1	ENSG00000178295.15	ENST00000317402.11:ENST00000381254.7:ENST00000528873.2:ENST00000534451.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	17	2	3.23583	4.502635	5.76944	2.48754e-5	2.56854e-7	0.00122627	2.02856e-5
chr1	66082023	66082123	189380	0	+	0.33	(0.32,0.36]	chr1	20533	187	INTRON	INTRON	PDE4B	ENSG00000184588.18	ENST00000329654.8:ENST00000341517.9:ENST00000423207.6:ENST00000531358.1:ENST00000532040.1:ENST00000526666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	4.27744	4.50197	4.7265	6.12159e-4	6.03386e-5	0.0189985	0.00268144
chr15	63832221	63832321	8211669	0	-	0.34	(0.32,0.36]	chr15	761480	513	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	4.27744	4.50197	4.7265	6.12159e-4	6.03386e-5	0.0189985	0.00268144
chr15	89586736	89586834	8076675	0	+	0.581633	(0.57,0.629]	chr15	746702	4	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.46827	4.501565	4.53486	5.2773e-4	3.95206e-4	0.0167673	0.0135724
chr16	3682450	3682548	8497060	0	-	0.622449	(0.57,0.629]	chr16	796567	23	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.46827	4.501565	4.53486	5.2773e-4	3.95206e-4	0.0167673	0.0135724
chr17	17712333	17712433	8664380	0	+	0.61	(0.57,0.629]	chr17	819350	274	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.46827	4.501565	4.53486	5.2773e-4	3.95206e-4	0.0167673	0.0135724
chr5	72107631	72107715	3209502	0	+	0.619048	(0.57,0.629]	chr5	296295	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000504183.1:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	4.46827	4.501565	4.53486	5.2773e-4	3.95206e-4	0.0167673	0.0135724
chr11	119287252	119287351	6511919	0	+	0.454545	(0.424,0.459]	chr11	589795	13	INTRON	INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.25372	4.501525	4.74933	9.96009e-8	5.36136e-8	8.4812e-6	4.85529e-6
chr11	67137240	67137340	6423371	0	+	0.45	(0.424,0.459]	chr11	578976	48	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.5463	4.500905	5.45551	0.00153741	1.50668e-6	0.0389999	9.96778e-5
chr17	28087513	28087613	8682845	0	+	0.38	(0.36,0.392]	chr17	821607	387	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	4.26063	4.499955	4.73928	0.00451705	5.12952e-7	0.0875511	3.78931e-5
chr16	29107157	29107257	8365107	0	+	0.63	(0.629,1]	chr16	780394	26	INTRON	INTRON	RRN3P2	ENSG00000103472.10	ENST00000564580.5:ENST00000427965.6	lncRNA	lncRNA	lncRNA	lncRNA	1	25	2	3.91228	4.49943	5.08658	1.12818e-5	5.52146e-6	6.02727e-4	3.23814e-4
chr1	21682423	21682522	539181	0	-	0.333333	(0.32,0.36]	chr1	59279	12	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	4.258	4.499280000000001	4.74056	5.34781e-10	3.62887e-12	6.53342e-8	5.85623e-10
chr19	52785610	52785707	9534281	0	-	0.505155	(0.49,0.526]	chr19	942670	23	INTRON	INTRON	ZNF600	ENSG00000189190.11	ENST00000648893.1:ENST00000647907.1:ENST00000692063.1:ENST00000338230.3:ENST00000648973.1:ENST00000599893.1:ENST00000598369.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	4.35534	4.498305	4.64127	2.4929e-4	1.32027e-6	0.0089494	8.96115e-5
chr1	211814970	211815070	852211	0	-	0.48	(0.459,0.49]	chr1	94912	214	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	3.94819	4.497765	5.04734	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	47878624	47878716	5165440	0	-	0.304348	[0,0.32]	chr8	462955	4	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	4.45912	4.49775	4.53638	1.18389e-5	8.41855e-6	6.49715e-4	4.71048e-4
chr3	196757044	196757144	2148171	0	+	0.49	(0.459,0.49]	chr3	210662	165	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.4153	4.49753	4.57976	4.98571e-4	8.98032e-7	0.0160179	6.37943e-5
chr6	170366809	170366909	3982040	0	+	0.47	(0.459,0.49]	chr6	361108	81	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.4153	4.49753	4.57976	4.98571e-4	8.98032e-7	0.0160179	6.37943e-5
chr8	127838461	127838561	5088383	0	+	0.49	(0.459,0.49]	chr8	455244	182	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	4.4153	4.49753	4.57976	4.98571e-4	8.98032e-7	0.0160179	6.37943e-5
chr7	45795698	45795791	4388423	0	+	0.494624	(0.49,0.526]	chr7	395265	1	INTRON	INTRON	GTF2IP13	ENSG00000272556.3	ENST00000609439.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	50	2	3.74469	4.497425	5.25016	1.64824e-12	1.20493e-12	2.75276e-10	2.06392e-10
chrX	72384145	72384245	10370062	0	-	0.35	(0.32,0.36]	chrX	1029636	320	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.59803	4.496895	5.39576	0.00267453	9.86331e-6	0.0637459	5.39872e-4
chr3	23331582	23331682	1787053	0	+	0.49	(0.459,0.49]	chr3	183405	76	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	4.04656	4.496600000000001	4.94664	3.80472e-5	8.34335e-10	0.00181622	9.96447e-8
chr3	149136619	149136719	2039824	0	+	0.4	(0.392,0.424]	chr3	203947	58	INTRON	INTRON	HPS3	ENSG00000163755.9	ENST00000296051.7:ENST00000460120.5:ENST00000462030.5:ENST00000486530.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	4.44207	4.494540000000001	4.54701	0.00102713	5.58952e-6	0.0276375	3.2822e-4
chr1	224310616	224310713	867121	0	-	0.381443	(0.36,0.392]	chr1	96470	20	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000467882.5:ENST00000492281.5:ENST00000488718.5:ENST00000436927.5:ENST00000470989.5:ENST00000470903.5:ENST00000461466.5:ENST00000498767.1:ENST00000461546.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr10	35140775	35140875	5834169	0	+	0.37	(0.36,0.392]	chr10	524361	25	INTRON	INTRON	CREM	ENSG00000095794.20	ENST00000474362.5:ENST00000374721.7:ENST00000496626.5:ENST00000685392.1:ENST00000482646.5:ENST00000489388.5:ENST00000374726.7:ENST00000461968.5:ENST00000490460.5:ENST00000466251.5:ENST00000482633.5:ENST00000495960.5:ENST00000686585.1:ENST00000429130.7:ENST00000469949.6:ENST00000460270.5:ENST00000496019.5:ENST00000354759.7:ENST00000489321.5:ENST00000374728.7:ENST00000427847.6:ENST00000345491.7:ENST00000487132.5:ENST00000439705.5:ENST00000479070.5:ENST00000337656.8:ENST00000374734.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr10	73009049	73009134	6161235	0	-	0.376471	(0.36,0.392]	chr10	551492	4	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr11	28313903	28314002	6357929	0	+	0.363636	(0.36,0.392]	chr11	569676	166	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr12	112424316	112424415	7025270	0	+	0.383838	(0.36,0.392]	chr12	643035	48	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr13	49088944	49089044	7379445	0	+	0.39	(0.36,0.392]	chr13	681796	132	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr17	15449528	15449627	8879670	0	-	0.373737	(0.36,0.392]	chr17	849598	89	INTRON	INTRON	CDRT4	ENSG00000239704.11	ENST00000619038.5:ENST00000519354.1:ENST00000520956.2:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr19	10930624	10930724	9285521	0	+	0.39	(0.36,0.392]	chr19	897202	3	SS5_PROX	SS5_PROX:INTRON	TIMM29	ENSG00000142444.7	ENST00000588807.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr2	9552157	9552257	1377442	0	-	0.37	(0.36,0.392]	chr2	142612	4	SS3_PROX	SS3_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000647622.1:ENST00000649972.1:ENST00000618923.2:ENST00000478059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr2	62812697	62812797	1049660	0	+	0.39	(0.36,0.392]	chr2	111823	407	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr20	34036031	34036131	9630745	0	+	0.39	(0.36,0.392]	chr20	950620	24	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr5	43013756	43013855	3458410	0	-	0.383838	(0.36,0.392]	chr5	317985	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000177738	ENSG00000177738.5	ENST00000654466.1	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr5	112377833	112377933	3568624	0	-	0.38	(0.36,0.392]	chr5	324420	700	INTRON	INTRON	EPB41L4A	ENSG00000129595.14	ENST00000261486.6:ENST00000512395.5:ENST00000305368.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr6	126172824	126172924	3874261	0	+	0.37	(0.36,0.392]	chr6	354254	566	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr7	38768797	38768897	4701326	0	-	0.37	(0.36,0.392]	chr7	421102	8	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr9	6944633	6944733	5332196	0	+	0.38	(0.36,0.392]	chr9	477192	16	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr9	124370505	124370604	5731625	0	-	0.373737	(0.36,0.392]	chr9	513711	132	INTRON	INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.26063	4.49442	4.72821	0.00451705	6.09158e-4	0.0875511	0.0188826
chr1	162756952	162757049	322048	0	+	0.371134	(0.36,0.392]	chr1	36351	8	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000672207.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr1	169289300	169289400	798454	0	-	0.39	(0.36,0.392]	chr1	88999	15	INTRON	INTRON	NME7	ENSG00000143156.14	ENST00000472647.5:ENST00000367811.8:ENST00000525440.5:ENST00000483228.5:ENST00000528517.5:ENST00000480478.5:ENST00000524967.5:ENST00000469474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr1	232974206	232974305	460026	0	+	0.383838	(0.36,0.392]	chr1	49598	37	INTRON	INTRON	NTPCR	ENSG00000135778.12	ENST00000494689.5:ENST00000366628.10:ENST00000490807.5:ENST00000496662.5:ENST00000366627.4:ENST00000487953.1:ENST00000490098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr10	15857313	15857412	6069950	0	-	0.373737	(0.36,0.392]	chr10	544258	90	INTRON	INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr10	67917092	67917192	5871221	0	+	0.37	(0.36,0.392]	chr10	526726	6	UTR3	UTR3:EXON_MRNA	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000406900.5:ENST00000403579.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr10	130155501	130155601	6023864	0	+	0.39	(0.36,0.392]	chr10	540450	98	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr11	19123808	19123908	6337174	0	+	0.37	(0.36,0.392]	chr11	568736	51	INTRON	INTRON	ZDHHC13	ENSG00000177054.14	ENST00000532026.5:ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr11	27422753	27422852	6584015	0	-	0.373737	(0.36,0.392]	chr11	598932	95	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr11	114404011	114404111	6503813	0	+	0.37	(0.36,0.392]	chr11	588062	7	INTRON	INTRON	RBM7	ENSG00000076053.12	ENST00000540163.5:ENST00000541475.5:ENST00000544313.5:ENST00000544582.1:ENST00000375490.10:ENST00000542140.5:ENST00000545678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr11	134237146	134237246	6530357	0	+	0.38	(0.36,0.392]	chr11	592116	4	SS5_PROX	SS5_PROX:INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000527586.1:ENST00000530402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr12	56750737	56750837	7179210	0	-	0.39	(0.36,0.392]	chr12	662547	3	SS5_PROX	SS5_PROX:INTRON	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5:ENST00000552408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr15	41038415	41038515	8137765	0	-	0.39	(0.36,0.392]	chr15	752999	103	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr15	42566306	42566406	7956316	0	+	0.37	(0.36,0.392]	chr15	735794	3	SS3_PROX	SS3_PROX:INTRON	HAUS2	ENSG00000137814.12	ENST00000568876.5:ENST00000567640.5:ENST00000260372.8:ENST00000391623.8:ENST00000563479.5:ENST00000564279.5:ENST00000570178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr2	234215	234272	1369251	0	-	0.368421	(0.36,0.392]	chr2	141580	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SH3YL1	ENSG00000035115.22	ENST00000403712.6:ENST00000356150.10:ENST00000463865.5:ENST00000626873.2:ENST00000403657.5:ENST00000405430.5:ENST00000473104.5:ENST00000403658.5:ENST00000468321.5:ENST00000479739.6:ENST00000451005.5:ENST00000431160.5:ENST00000471948.5:ENST00000481932.1:ENST00000488044.5:ENST00000497051.5:ENST00000488979.6:ENST00000475027.5:ENST00000454318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr2	190249041	190249139	1649918	0	-	0.377551	(0.36,0.392]	chr2	169581	25	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000410045.5:ENST00000409820.2:ENST00000392333.7:ENST00000485992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr20	45852629	45852728	9750177	0	-	0.363636	(0.36,0.392]	chr20	966017	36	INTRON	INTRON	ACOT8	ENSG00000101473.17	ENST00000217455.9:ENST00000461272.5:ENST00000652771.1:ENST00000488679.5:ENST00000487205.5:ENST00000493118.5:ENST00000483141.1:ENST00000484783.1:ENST00000486165.5:ENST00000481938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr3	195369445	195369545	2526303	0	-	0.38	(0.36,0.392]	chr3	241959	113	INTRON	INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr4	56998047	56998144	2628631	0	+	0.360825	(0.36,0.392]	chr4	252211	23	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr5	97171597	97171697	3554251	0	-	0.37	(0.36,0.392]	chr5	323676	2	SS3_PROX	SS3_PROX:INTRON	RIOK2	ENSG00000058729.11	ENST00000283109.8:ENST00000508447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr5	126797698	126797798	3306569	0	+	0.37	(0.36,0.392]	chr5	303552	195	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr5	146139515	146139615	3634000	0	-	0.38	(0.36,0.392]	chr5	330065	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr7	65926897	65926997	4397875	0	+	0.39	(0.36,0.392]	chr7	396331	530	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chrX	53403365	53403465	10345517	0	-	0.39	(0.36,0.392]	chrX	1027380	4	SS5_PROX	SS5_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chrX	72468511	72468609	10370919	0	-	0.367347	(0.36,0.392]	chrX	1029674	1	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.3312	4.493964999999999	4.65673	0.00387074	7.48315e-4	0.078873	0.0220209
chr14	36314511	36314608	7808406	0	-	0.319588	[0,0.32]	chr14	718971	1	CDS	CDS:EXON_MRNA	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000605579.5:ENST00000604336.5:ENST00000603139.1	protein_coding	protein_coding	protein_coding	protein_coding	34	139	2	4.10942	4.4939	4.87838	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	76073310	76073408	7212658	0	-	0.408163	(0.392,0.424]	chr12	665412	40	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	3.47186	4.493835	5.51581	0.00366403	1.07176e-6	0.0766409	7.36955e-5
chr17	43261357	43261457	8938075	0	-	0.6	(0.57,0.629]	chr17	859071	312	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	4.05192	4.493085	4.93425	2.91369e-5	8.80882e-6	0.00141183	4.93044e-4
chr8	124357166	124357266	5268886	0	-	0.45	(0.424,0.459]	chr8	470803	260	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	4.45728	4.492935	4.52859	2.77305e-9	3.27061e-12	3.07081e-7	5.32344e-10
chr14	88826510	88826609	7734316	0	+	0.545455	(0.526,0.57]	chr14	709665	13	INTRON	INTRON	TTC8	ENSG00000165533.19	ENST00000556077.5:ENST00000553718.1:ENST00000622513.4:ENST00000380656.7:ENST00000556567.5:ENST00000338104.10:ENST00000346301.8:ENST00000354441.10:ENST00000555057.5:ENST00000556651.5:ENST00000554686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.07767	4.492845	4.90802	0.00403601	4.81512e-5	0.0817225	0.00220626
chr14	90285853	90285953	7891062	0	-	0.54	(0.526,0.57]	chr14	727014	1	SS5_PROX	SS5_PROX:INTRON	NRDE2	ENSG00000119720.18	ENST00000354366.8:ENST00000556189.5:ENST00000553409.5:ENST00000555903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	4.07767	4.492845	4.90802	0.00403601	4.81512e-5	0.0817225	0.00220626
chr16	30868209	30868309	8546567	0	-	0.53	(0.526,0.57]	chr16	804552	155	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.07767	4.492845	4.90802	0.00403601	4.81512e-5	0.0817225	0.00220626
chr2	101023318	101023417	1531901	0	-	0.535354	(0.526,0.57]	chr2	159230	4	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.07767	4.492845	4.90802	0.00403601	4.81512e-5	0.0817225	0.00220626
chr11	74171922	74172022	6440512	0	+	0.41	(0.392,0.424]	chr11	582026	4	SS5_PROX	SS5_PROX:INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	4.12889	4.4927150000000005	4.85654	1.84333e-4	1.01794e-6	0.00688171	7.14423e-5
chr1	245093103	245093203	487134	0	+	0.54	(0.526,0.57]	chr1	51405	14	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000366522.6:ENST00000447569.6:ENST00000487845.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	4.13626	4.492100000000001	4.84794	0.00339748	6.50622e-5	0.0728314	0.00284455
chr10	102986612	102986712	5967723	0	+	0.53	(0.526,0.57]	chr10	536037	591	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.13626	4.492100000000001	4.84794	0.00339748	6.50622e-5	0.0728314	0.00284455
chr15	66734328	66734428	8012656	0	+	0.55	(0.526,0.57]	chr15	741000	168	INTRON	INTRON	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.13626	4.492100000000001	4.84794	0.00339748	6.50622e-5	0.0728314	0.00284455
chr3	177193463	177193563	2499965	0	-	0.53	(0.526,0.57]	chr3	239263	222	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	4.13626	4.492100000000001	4.84794	0.00339748	6.50622e-5	0.0728314	0.00284455
chr6	57587510	57587610	3801355	0	+	0.56	(0.526,0.57]	chr6	348691	5	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.13626	4.492100000000001	4.84794	0.00339748	6.50622e-5	0.0728314	0.00284455
chr6	17964900	17965000	4015625	0	-	0.52	(0.49,0.526]	chr6	363405	131	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1:ENST00000502704.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	3.41836	4.491265	5.56417	0.00136895	1.40942e-7	0.0359623	1.1686e-5
chr8	108218951	108219050	5245952	0	-	0.50505	(0.49,0.526]	chr8	469197	11	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.41836	4.491265	5.56417	0.00136895	1.40942e-7	0.0359623	1.1686e-5
chr8	144792220	144792312	5311850	0	-	0.782609	(0.629,1]	chr8	475346	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL8	ENSG00000161016.18	ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000262584.7:ENST00000532702.1:ENST00000525232.5:ENST00000531767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.52552	4.49122	5.45692	2.64806e-6	1.47634e-7	1.6738e-4	1.22032e-5
chr2	31898103	31898203	1410716	0	-	0.34	(0.32,0.36]	chr2	146736	44	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	40	2	3.6132	4.49054	5.36788	8.54172e-11	1e-12	1.16155e-8	1.72912e-10
chr20	37511193	37511292	9741115	0	-	0.494949	(0.49,0.526]	chr20	964944	16	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	16	105	2	3.83638	4.489330000000001	5.14228	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	234445012	234445111	889210	0	-	0.464646	(0.459,0.49]	chr1	98980	73	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.21222	4.488615	4.76501	1.46149e-4	9.25181e-6	0.00564049	5.14007e-4
chr11	61814514	61814608	6613637	0	-	0.446809	(0.424,0.459]	chr11	603300	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5:ENST00000491310.5:ENST00000544696.5:ENST00000466716.5:ENST00000544309.5:ENST00000539419.5:ENST00000448607.1:ENST00000473263.1:ENST00000545986.1:ENST00000541683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	4.45848	4.488515	4.51855	8.67885e-7	5.48586e-9	6.19626e-5	5.79354e-7
chr16	67531451	67531547	8409620	0	+	0.541667	(0.526,0.57]	chr16	787388	10	INTRON	INTRON	RIPOR1	ENSG00000039523.20	ENST00000562116.1:ENST00000562755.5:ENST00000379312.7:ENST00000042381.9:ENST00000566522.5:ENST00000540839.7:ENST00000566907.1:ENST00000422602.8:ENST00000566920.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	4.02157	4.488375	4.95518	1.71797e-7	2.63103e-10	1.40017e-5	3.32606e-8
chr20	45641271	45641370	9749935	0	-	0.727273	(0.629,1]	chr20	965956	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P7	ENSG00000235508.3	ENST00000447334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	4.29039	4.48801	4.68563	1.13329e-4	2.19386e-7	0.00463413	1.7286e-5
chr11	8685438	8685503	6312483	0	+	0.492308	(0.49,0.526]	chr11	566451	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	RPL27A:SNORA3B	ENSG00000166441.13:ENSG00000212607.1	ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1:ENST00000391305.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:nonsense_mediated_decay	37	278	2	4.47854	4.48662	4.4947	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43255958	43256058	8938021	0	-	0.51	(0.49,0.526]	chr17	859071	258	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	169	2	4.27095	4.486295	4.70164	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	48316545	48316644	5844985	0	+	0.383838	(0.36,0.392]	chr10	525570	79	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.45885	4.48545	5.51205	4.24507e-4	2.39077e-6	0.0140677	1.5204e-4
chr15	43589481	43589581	8148247	0	-	0.49	(0.459,0.49]	chr15	754939	2	SS5_PROX	SS5_PROX:INTRON	PPIP5K1	ENSG00000168781.23	ENST00000334933.8:ENST00000360135.8:ENST00000360301.8:ENST00000420765.6:ENST00000381879.8:ENST00000488768.5:ENST00000453080.5:ENST00000417085.2:ENST00000429176.5:ENST00000431962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	87	2	4.39143	4.48483	4.57823	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	75026088	75026186	7869209	0	-	0.306122	[0,0.32]	chr14	725170	27	INTRON	INTRON	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7:ENST00000553713.5:ENST00000556257.5:ENST00000556453.5:ENST00000555144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	4.31876	4.4833750000000006	4.64799	5.15904e-5	2.00168e-6	0.00235512	1.30649e-4
chr12	93854140	93854239	6990171	0	+	0.59596	(0.57,0.629]	chr12	638318	35	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000551065.5:ENST00000548483.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.21821	4.48327	4.74833	0.00185391	1.07277e-4	0.0459841	0.00442346
chr15	58881091	58881188	8192766	0	-	0.597938	(0.57,0.629]	chr15	759590	6	INTRON	INTRON	SLTM	ENSG00000137776.17	ENST00000380516.7:ENST00000432750.5:ENST00000560494.1:ENST00000492526.5:ENST00000493062.5:ENST00000557924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	4.21821	4.48327	4.74833	0.00185391	1.07277e-4	0.0459841	0.00442346
chr2	218265578	218265630	1696030	0	-	0.576923	(0.57,0.629]	chr2	173995	1	CDS	CDS:EXON_MRNA	AAMP	ENSG00000127837.10	ENST00000444053.5:ENST00000248450.9:ENST00000475678.5:ENST00000420660.5:ENST00000494720.5:ENST00000489767.5:ENST00000422731.1:ENST00000465442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	4.21821	4.48327	4.74833	0.00185391	1.07277e-4	0.0459841	0.00442346
chr19	40715421	40715518	9499228	0	-	0.474227	(0.459,0.49]	chr19	935960	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	COQ8B	ENSG00000123815.13	ENST00000677496.1:ENST00000594720.6:ENST00000679002.1:ENST00000677018.1:ENST00000678166.1:ENST00000678312.1:ENST00000677399.1:ENST00000678433.1:ENST00000678371.1:ENST00000678057.1:ENST00000678316.1:ENST00000677633.1:ENST00000596455.6:ENST00000679130.1:ENST00000679012.1:ENST00000679315.1:ENST00000593724.2:ENST00000676578.1:ENST00000678404.1:ENST00000677039.1:ENST00000324464.8:ENST00000599643.5:ENST00000601451.5:ENST00000594084.5:ENST00000676651.1:ENST00000600707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.56515	4.48292	5.40069	8.21277e-4	1.15324e-6	0.0238805	7.95154e-5
chr7	5384388	5384487	4616071	0	-	0.484848	(0.459,0.49]	chr7	415790	60	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.56515	4.48292	5.40069	8.21277e-4	1.15324e-6	0.0238805	7.95154e-5
chr4	41384903	41385003	2610532	0	+	0.38	(0.36,0.392]	chr4	250062	236	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	3.86419	4.482875	5.10156	1.86173e-5	1e-12	9.46472e-4	1.72912e-10
chr1	151211824	151211924	297277	0	+	0.61	(0.57,0.629]	chr1	31729	123	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.28422	4.48277	4.68132	0.00145677	1.50304e-4	0.0382827	0.00577248
chr3	172339418	172339517	2080295	0	+	0.585859	(0.57,0.629]	chr3	206158	12	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.28422	4.48277	4.68132	0.00145677	1.50304e-4	0.0382827	0.00577248
chr5	36957703	36957803	3150684	0	+	0.6	(0.57,0.629]	chr5	291127	2	SS3_PROX	SS3_PROX:INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000505998.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	4.28422	4.48277	4.68132	0.00145677	1.50304e-4	0.0382827	0.00577248
chr9	127160173	127160273	5494718	0	+	0.59	(0.57,0.629]	chr9	490943	805	INTRON	INTRON	RALGPS1	ENSG00000136828.19	ENST00000424082.6:ENST00000259351.10:ENST00000394022.7:ENST00000373436.5:ENST00000373434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.28422	4.48277	4.68132	0.00145677	1.50304e-4	0.0382827	0.00577248
chr1	32685316	32685415	100165	0	+	0.484848	(0.459,0.49]	chr1	11278	49	UTR3	UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000373493.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.13232	4.482514999999999	4.83271	1.09213e-4	1.41387e-5	0.00442392	7.54814e-4
chr5	69892197	69892297	3206587	0	+	0.37	(0.36,0.392]	chr5	295784	165	INTRON	INTRON	GUSBP13	ENSG00000198237.8	ENST00000506490.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	24	2	4.4394	4.48111	4.52282	2.8726e-8	1.58282e-8	2.70069e-6	1.55617e-6
chr6	127515877	127515968	4187605	0	-	0.67033	(0.629,1]	chr6	381195	5	CDS	CDS:EXON_MRNA	SOGA3	ENSG00000214338.10	ENST00000525778.5:ENST00000465909.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.60202	4.480875	5.35973	1.20607e-4	4.20109e-7	0.00489816	3.14314e-5
chr2	111770486	111770582	1547688	0	-	0.333333	(0.32,0.36]	chr2	160251	7	INTRON	INTRON	ANAPC1	ENSG00000153107.13	ENST00000643447.1:ENST00000427997.5:ENST00000341068.8:ENST00000462785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	3.6551	4.47414	5.29318	2.11023e-4	1.5251e-5	0.00785	8.01855e-4
chr9	14187101	14187201	5575411	0	-	0.36	(0.32,0.36]	chr9	500103	64	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	4.06155	4.473455	4.88536	7.26161e-6	1e-12	4.19717e-4	1.73382e-10
chr5	14418385	14418484	3124502	0	+	0.575758	(0.57,0.629]	chr5	289364	114	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000509354.1:ENST00000512303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	4.46827	4.472065000000001	4.47586	5.2773e-4	1.32384e-7	0.0167673	1.10534e-5
chr1	184898082	184898181	822565	0	-	0.565657	(0.526,0.57]	chr1	91287	35	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	4.14397	4.471105	4.79824	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24182366	24182466	10104712	0	+	0.38	(0.36,0.392]	chrX	1007471	22	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	35	2	3.7033	4.47082	5.23834	3.14815e-8	1e-12	2.93512e-6	1.73382e-10
chr9	130805553	130805653	5515984	0	+	0.46	(0.459,0.49]	chr9	495051	907	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.13407	4.47062	5.80717	7.72738e-4	1.22616e-8	0.0225969	1.22232e-6
chr6	30196115	30196215	4032084	0	-	0.54	(0.526,0.57]	chr6	365051	2	SS5_PROX	SS5_PROX:INTRON	TRIM26	ENSG00000234127.9	ENST00000453195.5:ENST00000454678.7:ENST00000437089.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	4.07767	4.469135	4.8606	0.00403601	1.86203e-9	0.0817225	2.12626e-7
chr6	36503885	36503985	4048818	0	-	0.5	(0.49,0.526]	chr6	369065	35	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.03227	4.468905	5.90554	1.31336e-4	1.93601e-9	0.00519725	2.18285e-7
chr8	65818476	65818576	5184144	0	-	0.4	(0.392,0.424]	chr8	464560	291	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000523253.1:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.17862	4.4682949999999995	4.75797	4.01331e-5	2.01084e-7	0.00187621	1.60882e-5
chr18	7673280	7673380	9045686	0	+	0.31	[0,0.32]	chr18	874701	1050	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.39782	4.4671	4.53638	0.00334699	8.41855e-6	0.0734189	4.71048e-4
chr19	32447074	32447173	9324081	0	+	0.282828	[0,0.32]	chr19	903678	68	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000585597.5:ENST00000588648.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	4.39782	4.4671	4.53638	0.00334699	8.41855e-6	0.0734189	4.71048e-4
chr14	75093973	75094072	7869803	0	-	0.313131	[0,0.32]	chr14	725298	21	INTRON	INTRON	NEK9	ENSG00000119638.14	ENST00000238616.10:ENST00000678531.1:ENST00000678037.1:ENST00000678749.1:ENST00000557026.5:ENST00000677700.1:ENST00000676711.1:ENST00000556170.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.35176	4.46616	5.58056	0.0102933	1.7046e-6	0.170122	1.13343e-4
chr3	60467213	60467313	2305953	0	-	0.25	[0,0.32]	chr3	225034	3865	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.35176	4.46616	5.58056	0.0102933	1.7046e-6	0.170122	1.13343e-4
chrX	73954022	73954121	10163925	0	+	0.585859	(0.57,0.629]	chrX	1012984	46	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	2	26	2	4.25094	4.46613	4.68132	1.50304e-4	2.06688e-9	0.00577248	2.3239e-7
chr20	49283405	49283503	9669238	0	+	0.489796	(0.459,0.49]	chr20	955630	12	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	6	48	2	4.24368	4.466085	4.68849	4.01762e-11	1e-12	5.69179e-9	1.72912e-10
chr17	46150323	46150422	8948906	0	-	0.383838	(0.36,0.392]	chr17	860854	17	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	19	2	3.8888	4.464005	5.03921	9.59768e-5	1.9178e-8	0.00399331	1.85307e-6
chr13	19664425	19664525	7328093	0	+	0.51	(0.49,0.526]	chr13	677493	9	INTRON	INTRON	MPHOSPH8	ENSG00000196199.14	ENST00000361479.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.0726	4.463990000000001	4.85538	6.26806e-5	1.93553e-5	0.00277665	9.87839e-4
chr1	235125827	235125926	889838	0	-	0.515152	(0.49,0.526]	chr1	99098	31	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.72059	4.46371	5.20683	2.73826e-4	3.9703e-6	0.00975361	2.39291e-4
chr10	12731366	12731466	5795315	0	+	0.39	(0.36,0.392]	chr10	521735	642	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	3.54131	4.46316	5.38501	3.17078e-4	2.7967e-11	0.0111061	4.06246e-9
chr16	30864013	30864112	8546525	0	-	0.393939	(0.392,0.424]	chr16	804552	113	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.40795	4.46188	5.51581	5.07532e-4	1.07176e-6	0.0162102	7.36955e-5
chr11	34938251	34938350	6369804	0	+	0.30303	[0,0.32]	chr11	570836	64	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	4.10414	4.45956	4.81498	5.91147e-6	3.34826e-7	3.45863e-4	2.57546e-5
chr9	121195204	121195303	5718345	0	-	0.262626	[0,0.32]	chr9	512894	14	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	4.10414	4.45956	4.81498	5.91147e-6	3.34826e-7	3.45863e-4	2.57546e-5
chr1	207323166	207323265	416839	0	+	0.232323	[0,0.32]	chr1	44978	2	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000695830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	4.02472	4.458635	4.89255	8.66912e-6	2.15736e-7	4.85864e-4	1.70234e-5
chr16	15136466	15136566	8516042	0	-	0.69	(0.629,1]	chr16	799383	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P6	ENSG00000250251.6	ENST00000343738.10:ENST00000538100.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	15	2	4.39444	4.458565	4.52269	6.41849e-4	3.10525e-4	0.0196462	0.0106515
chr17	16450238	16450338	8661156	0	+	0.54	(0.526,0.57]	chr17	819035	83	INTRON	INTRON	SNHG29	ENSG00000175061.19	ENST00000584177.5:ENST00000665646.1:ENST00000660419.1:ENST00000668333.1:ENST00000664939.1:ENST00000583400.7:ENST00000669136.1:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000692724.1:ENST00000689691.1:ENST00000686699.1:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	3.88187	4.45809	5.03431	8.23795e-5	1.64566e-5	0.00351856	8.48927e-4
chr8	127737620	127737686	5087878	0	+	0.590909	(0.57,0.629]	chr8	455197	1	UTR5	UTR5:EXON_MRNA:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	3.26242	4.457675	5.65293	1.01567e-5	2.31977e-8	5.53203e-4	2.19827e-6
chr5	110749453	110749552	3274213	0	+	0.525253	(0.49,0.526]	chr5	301467	8	INTRON	INTRON	SLC25A46	ENSG00000164209.17	ENST00000508781.5:ENST00000513807.5:ENST00000355943.8:ENST00000447245.6:ENST00000504098.1:ENST00000502462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	3.63247	4.456945	5.28142	3.91053e-4	2.46593e-6	0.0131535	1.54892e-4
chr3	142516212	142516310	2459456	0	-	0.44898	(0.424,0.459]	chr3	236185	3	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	4.11931	4.456835	4.79436	6.58578e-11	7.26175e-12	9.09931e-9	1.12673e-9
chr19	14393462	14393561	9296231	0	+	0.616162	(0.57,0.629]	chr19	899171	20	INTRON	INTRON	ADGRE5	ENSG00000123146.20	ENST00000587728.5:ENST00000358600.7:ENST00000587535.3:ENST00000586517.5:ENST00000357355.7:ENST00000242786.6:ENST00000592261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	3.4771	4.456205000000001	5.43531	2.57549e-5	2.83977e-7	0.00126626	2.21461e-5
chr1	32138623	32138723	97134	0	+	0.45	(0.424,0.459]	chr1	10750	301	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	4.01972	4.45515	4.89058	2.56149e-8	8.77883e-9	2.43432e-6	9.05568e-7
chr17	1705391	1705490	8839457	0	-	0.444444	(0.424,0.459]	chr17	843923	27	UTR3	UTR3:EXON_MRNA	TLCD2	ENSG00000185561.10	ENST00000330676.8	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.91426	4.455105	4.99595	1.12148e-7	1.88138e-9	9.48939e-6	2.13412e-7
chrX	24763438	24763538	10106652	0	+	0.36	(0.32,0.36]	chrX	1007701	141	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	3.87259	4.45504	5.03749	9.65678e-5	3.96495e-5	0.00399919	0.00188516
chr10	101694731	101694822	6238001	0	-	0.615385	(0.57,0.629]	chr10	558196	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	FBXW4	ENSG00000107829.15	ENST00000331272.9:ENST00000664783.1:ENST00000457105.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	195	2	4.08284	4.454635	4.82643	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	137965567	137965667	3612623	0	-	0.34	(0.32,0.36]	chr5	327860	27	INTRON	INTRON	FAM13B	ENSG00000031003.11	ENST00000689681.1:ENST00000033079.7:ENST00000425075.6:ENST00000420893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.39891	4.45461	5.51031	0.00108651	2.41138e-6	0.0301638	1.53938e-4
chr15	75072640	75072740	8043663	0	+	0.35	(0.32,0.36]	chr15	743145	125	INTRON	INTRON	PPCDC	ENSG00000138621.12	ENST00000563298.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	15	2	4.02125	4.454065	4.88688	3.53532e-4	9.03252e-8	0.0122629	7.79413e-6
chr12	128464795	128464895	7049575	0	+	0.45	(0.424,0.459]	chr12	646490	488	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	4.05658	4.453355	4.85013	3.50264e-12	1e-12	5.66388e-10	1.73382e-10
chr9	6835538	6835638	5331097	0	+	0.46	(0.459,0.49]	chr9	477152	166	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	35	228	2	4.22249	4.4531600000000005	4.68383	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	53327751	53327851	4085461	0	-	0.39	(0.36,0.392]	chr6	372286	317	INTRON	INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	3.86419	4.4517	5.03921	9.59768e-5	1.86173e-5	0.00399331	9.46472e-4
chr1	93341108	93341206	695669	0	-	0.418367	(0.392,0.424]	chr1	75364	2	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000451302.6:ENST00000668257.1:ENST00000661111.1:ENST00000659026.1:ENST00000669506.1:ENST00000657560.1:ENST00000421202.6:ENST00000670231.1:ENST00000411670.5:ENST00000452347.6:ENST00000653362.1:ENST00000655606.1:ENST00000445076.2:ENST00000457387.2:ENST00000438777.5:ENST00000449305.5	lncRNA	lncRNA	lncRNA	lncRNA	21	96	2	3.79592	4.451585	5.10725	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	35615686	35615786	9331376	0	+	0.52	(0.49,0.526]	chr19	905146	3	SS5_PROX	SS5_PROX:INTRON	HAUS5	ENSG00000249115.9	ENST00000203166.10:ENST00000587439.5:ENST00000585968.5:ENST00000424522.5:ENST00000428854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	3.07223	4.451235	5.83024	9.76018e-4	4.05406e-9	0.0274227	4.37881e-7
chr7	30558435	30558535	4675568	0	-	0.42	(0.392,0.424]	chr7	419660	102	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	GARS1-DT	ENSG00000196295.13	ENST00000434399.5:ENST00000578293.6:ENST00000580902.5:ENST00000631229.2:ENST00000626902.2:ENST00000355837.4:ENST00000426529.6:ENST00000578245.5:ENST00000578572.1:ENST00000577889.1:ENST00000584621.5:ENST00000656284.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	8	35	2	3.56718	4.451015	5.33485	3.13807e-10	4.44158e-11	3.91722e-8	6.22225e-9
chr2	241765209	241765309	1366061	0	+	0.67	(0.629,1]	chr2	141380	88	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.9362	4.450555	4.96491	0.0052327	1.5112e-5	0.0992178	8.01855e-4
chr2	61416666	61416766	1458643	0	-	0.29	[0,0.32]	chr2	151659	102	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	4.34135	4.44902	4.55669	2.8746e-7	3.01397e-8	2.23534e-5	2.83503e-6
chr8	65831374	65831474	5184273	0	-	0.39	(0.36,0.392]	chr8	464560	420	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000523253.1:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	4.26063	4.448745000000001	4.63686	0.00451705	2.89674e-9	0.0875511	3.19007e-7
chr8	30095528	30095628	4963525	0	+	0.81	(0.629,1]	chr8	444649	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	3.43995	4.448435	5.45692	6.49948e-6	1.47634e-7	3.75413e-4	1.22032e-5
chr22	40082270	40082370	9946690	0	+	0.41	(0.392,0.424]	chr22	989390	363	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	4.36677	4.448135	4.5295	8.10105e-6	1.33215e-11	4.57465e-4	2.01348e-9
chr11	10101688	10101788	6560512	0	-	0.36	(0.32,0.36]	chr11	596538	572	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	3.75647	4.44802	5.13957	6.71414e-5	6.44559e-5	0.00291649	0.00284455
chr16	216157	216257	8486401	0	-	0.54	(0.526,0.57]	chr16	794148	65	INTRON	INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000419516.5:ENST00000397780.5:ENST00000418978.5:ENST00000430864.5:ENST00000443357.5:ENST00000494366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	4.04709	4.447515	4.84794	6.50622e-5	2.21154e-5	0.00284455	0.00112425
chr17	39648962	39649061	8711909	0	+	0.555556	(0.526,0.57]	chr17	825777	111	INTRON	INTRON	STARD3	ENSG00000131748.16	ENST00000578232.5:ENST00000580551.5:ENST00000578254.5:ENST00000544210.6:ENST00000578577.5:ENST00000583582.5:ENST00000581894.5:ENST00000336308.10:ENST00000394250.8:ENST00000577248.5:ENST00000579479.5:ENST00000580611.5:ENST00000585214.5:ENST00000583718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	4.04709	4.447515	4.84794	6.50622e-5	2.21154e-5	0.00284455	0.00112425
chr14	34581900	34582000	7802466	0	-	0.57	(0.526,0.57]	chr14	718235	3	SS3_PROX	SS3_PROX:INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000555541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	3.69524	4.447285	5.19933	3.03531e-4	4.16513e-6	0.0107298	2.48371e-4
chr1	42308050	42308150	588091	0	-	0.44	(0.424,0.459]	chr1	66002	290	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr11	57769124	57769223	6398574	0	+	0.454545	(0.424,0.459]	chr11	573716	46	INTRON	INTRON	CTNND1	ENSG00000198561.16	ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr12	19603759	19603859	6840876	0	+	0.44	(0.424,0.459]	chr12	625034	506	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr12	123976551	123976651	7042961	0	+	0.44	(0.424,0.459]	chr12	646266	21	INTRON	INTRON	ZNF664:RFLNA	ENSG00000179195.16:ENSG00000178882.15	ENST00000537532.5:ENST00000539644.5:ENST00000392404.7:ENST00000538932.6:ENST00000337815.9:ENST00000541448.5:ENST00000389727.8:ENST00000542493.5:ENST00000545615.1:ENST00000543017.5:ENST00000539257.5:ENST00000546098.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr14	31314380	31314479	7795093	0	-	0.444444	(0.424,0.459]	chr14	717860	8	INTRON	INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr14	63966337	63966434	7650592	0	+	0.443299	(0.424,0.459]	chr14	703939	20	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr16	89451495	89451594	8624364	0	-	0.444444	(0.424,0.459]	chr16	813747	198	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr18	62737639	62737739	9136876	0	+	0.45	(0.424,0.459]	chr18	881551	200	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr2	25429516	25429614	1401348	0	-	0.44898	(0.424,0.459]	chr2	145449	15	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000479898.5:ENST00000482145.5:ENST00000481841.5:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr2	32680421	32680521	982046	0	+	0.43	(0.424,0.459]	chr2	107351	11	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1:ENST00000438654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr2	70243829	70243929	1481779	0	-	0.45	(0.424,0.459]	chr2	153381	73	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr4	147682134	147682231	3045542	0	-	0.453608	(0.424,0.459]	chr4	283338	13	INTRON	INTRON	PRMT9	ENSG00000164169.13	ENST00000322396.7:ENST00000514886.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr5	122823968	122824067	3300548	0	+	0.444444	(0.424,0.459]	chr5	303150	46	INTRON	INTRON	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr6	37830110	37830210	3770687	0	+	0.43	(0.424,0.459]	chr6	345064	97	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr6	83343175	83343275	4116148	0	-	0.45	(0.424,0.459]	chr6	375018	274	INTRON	INTRON	ME1	ENSG00000065833.9	ENST00000369705.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr7	100544840	100544939	4491585	0	+	0.444444	(0.424,0.459]	chr7	404255	49	INTRON	INTRON	AGFG2	ENSG00000106351.13	ENST00000300176.9:ENST00000430857.5:ENST00000477022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chrX	134406491	134406591	10228042	0	+	0.44	(0.424,0.459]	chrX	1018457	95	INTRON	INTRON	PHF6	ENSG00000156531.18	ENST00000687496.1:ENST00000685553.1:ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000691812.1:ENST00000688598.1:ENST00000693759.1:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.40599	4.447005	4.48802	0.00154565	0.00121831	0.0389999	0.0326347
chr17	31964748	31964847	8697914	0	+	0.424242	(0.392,0.424]	chr17	823660	167	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.03703	4.446785	4.85654	1.84333e-4	1.48653e-4	0.00688171	0.00578975
chr20	35457803	35457903	9636410	0	+	0.41	(0.392,0.424]	chr20	951360	1	SS3_PROX	SS3_PROX:INTRON	CEP250	ENSG00000126001.16	ENST00000446710.5:ENST00000420564.5:ENST00000476146.5:ENST00000461386.5:ENST00000397527.6:ENST00000397524.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	4.03703	4.446785	4.85654	1.84333e-4	1.48653e-4	0.00688171	0.00578975
chr3	123579422	123579522	2412007	0	-	0.42	(0.392,0.424]	chr3	231246	113	INTRON	INTRON	HACD2	ENSG00000206527.10	ENST00000383657.10:ENST00000469317.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.03703	4.446785	4.85654	1.84333e-4	1.48653e-4	0.00688171	0.00578975
chr6	97273562	97273661	4136114	0	-	0.393939	(0.392,0.424]	chr6	376987	1	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000508976.5:ENST00000508820.1:ENST00000496119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	4.03703	4.446785	4.85654	1.84333e-4	1.48653e-4	0.00688171	0.00578975
chr7	74739705	74739805	4431618	0	+	0.41	(0.392,0.424]	chr7	398349	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000620631.4:ENST00000621640.1:ENST00000462915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	4.03703	4.446785	4.85654	1.84333e-4	1.48653e-4	0.00688171	0.00578975
chr12	11015339	11015439	7086483	0	-	0.4	(0.392,0.424]	chr12	651840	87	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.78194	4.446595	5.11125	7.47402e-4	3.31137e-5	0.0225125	0.00159224
chr12	29310103	29310203	7128498	0	-	0.41	(0.392,0.424]	chr12	654635	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000257176	ENSG00000257176.3	ENST00000553105.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	3.78194	4.446595	5.11125	7.47402e-4	3.31137e-5	0.0225125	0.00159224
chr2	226939418	226939518	1322945	0	+	0.42	(0.392,0.424]	chr2	136759	36	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000409053.1:ENST00000491490.5:ENST00000493526.1:ENST00000483268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.78194	4.446595	5.11125	7.47402e-4	3.31137e-5	0.0225125	0.00159224
chr5	37136026	37136126	3441885	0	-	0.41	(0.392,0.424]	chr5	316532	101	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000509849.5:ENST00000514429.5:ENST00000512288.5:ENST00000510830.2:ENST00000509957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.78194	4.446595	5.11125	7.47402e-4	3.31137e-5	0.0225125	0.00159224
chr7	77547691	77547791	4440824	0	+	0.42	(0.392,0.424]	chr7	399533	15	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.78194	4.446595	5.11125	7.47402e-4	3.31137e-5	0.0225125	0.00159224
chr8	47947026	47947125	5166165	0	-	0.59596	(0.57,0.629]	chr8	463133	26	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.71277	4.445845	5.17892	3.48382e-6	2.54625e-6	2.13641e-4	1.59749e-4
chr10	97444369	97444466	6221583	0	-	0.43299	(0.424,0.459]	chr10	556637	7	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC1	ENSG00000171311.13	ENST00000370902.8:ENST00000370886.9:ENST00000370885.8:ENST00000485122.6:ENST00000477692.6:ENST00000370884.5:ENST00000471049.5:ENST00000472345.5:ENST00000476234.5:ENST00000489158.1:ENST00000474309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	45	2	3.72432	4.44578	5.16724	4.32435e-11	1e-12	6.10893e-9	1.72912e-10
chr12	19504912	19505011	6839877	0	+	0.373737	(0.36,0.392]	chr12	625002	43	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1:ENST00000512223.6:ENST00000398731.3	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	4.39898	4.44539	4.4918	4.36875e-6	8.56612e-8	2.58808e-4	7.38607e-6
chr3	52591251	52591350	2284330	0	-	0.474747	(0.459,0.49]	chr3	223090	16	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000462207.1:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	3.27506	4.44511	5.61516	3.71826e-5	9.49302e-8	0.00178235	8.06088e-6
chr16	85360548	85360648	8472742	0	+	0.76	(0.629,1]	chr16	792098	12	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.39846	4.444715	5.49097	5.39652e-4	9.87659e-8	0.0171646	8.31085e-6
chr5	34200077	34200171	3437478	0	-	0.361702	(0.36,0.392]	chr5	316052	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5:ENST00000512782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	40	2	3.80812	4.443405	5.07869	2.99846e-9	1e-12	3.30937e-7	1.72912e-10
chr18	3456924	3457018	9042035	0	+	0.404255	(0.392,0.424]	chr18	874505	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000551402.1:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000549468.5:ENST00000551333.1:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.7075	4.4428	5.1781	9.40427e-4	2.48959e-5	0.0266969	0.00122627
chr21	45224462	45224561	9829836	0	+	0.707071	(0.629,1]	chr21	975146	24	UTR3	UTR3:EXON_MRNA:INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	3.52552	4.442625	5.35973	2.64806e-6	4.20109e-7	1.6738e-4	3.14314e-5
chr6	87484529	87484629	3831258	0	+	0.42	(0.392,0.424]	chr6	351055	66	INTRON	INTRON	SLC35A1	ENSG00000164414.19	ENST00000464978.5:ENST00000369556.7:ENST00000369557.9:ENST00000369552.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.96221	4.442615	4.92302	1.96069e-4	1.45314e-4	0.00725539	0.00569484
chr7	110821997	110822097	4811917	0	-	0.42	(0.392,0.424]	chr7	431911	1566	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.96221	4.442615	4.92302	1.96069e-4	1.45314e-4	0.00725539	0.00569484
chr7	131054153	131054253	4848663	0	-	0.42	(0.392,0.424]	chr7	434489	12	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	11	2	3.96221	4.442615	4.92302	1.96069e-4	1.45314e-4	0.00725539	0.00569484
chr5	14418285	14418385	3124501	0	+	0.49	(0.459,0.49]	chr5	289364	113	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000509354.1:ENST00000512303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	3.71812	4.44242	5.16672	1.07121e-5	7.74288e-6	5.77005e-4	4.39068e-4
chr11	79109554	79109654	6670806	0	-	0.53	(0.526,0.57]	chr11	611507	333	INTRON	INTRON	TENM4	ENSG00000149256.16	ENST00000278550.12:ENST00000532654.5:ENST00000527736.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	3.39765	4.439665	5.48168	9.51513e-5	2.6732e-7	0.00399331	2.09843e-5
chr17	44874250	44874349	8943837	0	-	0.555556	(0.526,0.57]	chr17	860169	12	INTRON	INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.4704	4.439255	5.40811	4.12702e-5	6.86579e-7	0.00192437	4.92496e-5
chr10	24653691	24653791	6083130	0	-	0.39	(0.36,0.392]	chr10	545319	182	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.91092	4.43905	4.96718	5.00165e-4	1.24104e-4	0.0160179	0.0049353
chr10	91824047	91824145	5934977	0	+	0.367347	(0.36,0.392]	chr10	532253	13	INTRON	INTRON	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.91092	4.43905	4.96718	5.00165e-4	1.24104e-4	0.0160179	0.0049353
chr8	60705077	60705177	4992312	0	+	0.38	(0.36,0.392]	chr8	447787	249	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000695849.1:ENST00000695848.1:ENST00000526846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.91092	4.43905	4.96718	5.00165e-4	1.24104e-4	0.0160179	0.0049353
chr9	123753506	123753605	5729658	0	-	0.373737	(0.36,0.392]	chr9	513659	764	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.91092	4.43905	4.96718	5.00165e-4	1.24104e-4	0.0160179	0.0049353
chr1	634128	634228	45	0	+	0.52	(0.49,0.526]	chr1	5	7	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	32	234	2	4.38877	4.4388000000000005	4.48883	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	112491488	112491588	7567066	0	-	0.39	(0.36,0.392]	chr13	696196	14	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	4.30331	4.437875	4.57244	2.34074e-5	2.92322e-6	0.00116109	1.80583e-4
chr17	592954	593054	8830271	0	-	0.39	(0.36,0.392]	chr17	842625	62	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681897.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	4.30331	4.437875	4.57244	2.34074e-5	2.92322e-6	0.00116109	1.80583e-4
chr7	129311113	129311213	4542919	0	+	0.37	(0.36,0.392]	chr7	408714	853	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	4.38376	4.43778	4.4918	1.64803e-5	4.36875e-6	8.48507e-4	2.58808e-4
chr1	179227340	179227440	813440	0	-	0.41	(0.392,0.424]	chr1	90525	844	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	142	2	4.18103	4.43694	4.69285	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	36547571	36547671	991298	0	+	0.47	(0.459,0.49]	chr2	107903	4	SS5_PROX	SS5_PROX:INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	9	49	2	3.18022	4.4367149999999995	5.69321	2.97132e-9	1e-12	3.26885e-7	1.73382e-10
chr2	86325825	86325925	1505222	0	-	0.45	(0.424,0.459]	chr2	156056	432	INTRON	INTRON	REEP1	ENSG00000068615.20	ENST00000165698.9:ENST00000538924.7:ENST00000691093.1:ENST00000692664.1:ENST00000688400.1:ENST00000686220.1:ENST00000689156.1:ENST00000693329.1:ENST00000643817.2:ENST00000535845.6:ENST00000541910.6:ENST00000453231.6:ENST00000691703.1:ENST00000473407.5:ENST00000475475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	88	2	4.0506	4.436055	4.82151	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	37127342	37127442	5379004	0	+	0.41	(0.392,0.424]	chr9	480674	4	SS5_PROX	SS5_PROX:INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	3.61322	4.436045	5.25887	3.44162e-9	8.96274e-11	3.76949e-7	1.21272e-8
chr11	111687200	111687300	6492715	0	+	0.49	(0.459,0.49]	chr11	586972	664	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.39129	4.435945	5.4806	0.00244536	4.11395e-7	0.0587626	3.09732e-5
chr5	180614067	180614123	3683417	0	-	0.571429	(0.57,0.629]	chr5	335551	1	CDS	CDS:UTR3:EXON_MRNA	FLT4	ENSG00000037280.16	ENST00000261937.11:ENST00000393347.7:ENST00000507059.5:ENST00000502649.5:ENST00000619105.4:ENST00000514810.1:ENST00000512795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	3.62493	4.43582	5.24671	4.60022e-6	2.15311e-6	2.71925e-4	1.3963e-4
chr21	31671783	31671878	9855127	0	-	0.442105	(0.424,0.459]	chr21	977985	4	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	4.35302	4.435785	4.51855	8.67885e-7	2.54851e-8	6.19626e-5	2.42771e-6
chr17	28581450	28581547	8898300	0	-	0.505155	(0.49,0.526]	chr17	852265	8	INTRON	INTRON	ENSG00000258472:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000577259.1:ENST00000378976.5:ENST00000578230.5:ENST00000580083.6:ENST00000531839.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	4.33289	4.435715	4.53854	1.63358e-12	1e-12	2.74612e-10	1.72912e-10
chr6	108067976	108068076	4155515	0	-	0.45	(0.424,0.459]	chr6	378435	33	INTRON	INTRON	OSTM1	ENSG00000081087.15	ENST00000193322.8:ENST00000440575.6:ENST00000467960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.09426	4.435585	4.77691	0.00651192	4.08028e-8	0.116758	3.72797e-6
chr3	12536102	12536202	1771239	0	+	0.49	(0.459,0.49]	chr3	181896	4	SS3_PROX	SS3_PROX:INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	63	2	4.12996	4.435255	4.74055	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	42216179	42216279	9503582	0	-	0.39	(0.36,0.392]	chr19	936598	1	SS5_PROX	SS5_PROX:INTRON	DEDD2	ENSG00000160570.14	ENST00000596251.6:ENST00000336034.8:ENST00000595337.5:ENST00000593804.5:ENST00000601135.5:ENST00000598415.5:ENST00000602075.5:ENST00000600559.5:ENST00000598090.5:ENST00000598727.5:ENST00000593561.5:ENST00000602201.1:ENST00000598200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.83113	4.435169999999999	5.03921	6.41601e-4	9.59768e-5	0.0193935	0.00399331
chr19	52194094	52194193	9380453	0	+	0.383838	(0.36,0.392]	chr19	914680	28	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000628959.1:ENST00000468280.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.83113	4.435169999999999	5.03921	6.41601e-4	9.59768e-5	0.0193935	0.00399331
chr1	170541165	170541248	337912	0	+	0.385542	(0.36,0.392]	chr1	37700	1	INTRON	INTRON	GORAB	ENSG00000120370.14	ENST00000685976.1:ENST00000686870.1:ENST00000685515.1:ENST00000688499.1:ENST00000688688.1:ENST00000687880.1:ENST00000692875.1:ENST00000367762.2:ENST00000692234.1:ENST00000691235.1:ENST00000690898.1:ENST00000689173.1:ENST00000498166.6:ENST00000367763.8:ENST00000687370.1:ENST00000693173.1:ENST00000690124.1:ENST00000693373.1:ENST00000692855.1:ENST00000691199.1:ENST00000498600.2:ENST00000684929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	34	2	3.61757	4.434945	5.25232	6.15221e-8	1e-12	5.48981e-6	1.72912e-10
chr20	63965555	63965640	9780950	0	-	0.588235	(0.57,0.629]	chr20	970128	5	INTRON	INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.77045	4.43469	5.09893	9.07674e-5	7.91825e-6	0.00383949	4.54299e-4
chr11	65660311	65660407	6625589	0	-	0.59375	(0.57,0.629]	chr11	605989	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RELA	ENSG00000173039.20	ENST00000612991.4:ENST00000406246.8:ENST00000525693.5:ENST00000308639.13:ENST00000526283.6:ENST00000531484.5:ENST00000532999.5:ENST00000529389.5:ENST00000525658.5:ENST00000533546.5:ENST00000526738.1:ENST00000527909.5:ENST00000534558.5:ENST00000527749.5:ENST00000532879.5:ENST00000531238.1:ENST00000527074.5:ENST00000525301.5:ENST00000533187.5:ENST00000527874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	69	2	4.23821	4.434685	4.63116	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	49104252	49104347	9373308	0	+	0.6	(0.57,0.629]	chr19	912719	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	3.55646	4.43463	5.3128	9.9438e-7	3.507e-7	7.00342e-5	2.66915e-5
chr1	179041622	179041721	364727	0	+	0.686869	(0.629,1]	chr1	39365	152	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000440702.5:ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.18344	4.434535	4.68563	0.00183228	1.13329e-4	0.0469284	0.00463413
chr20	25468436	25468532	9720068	0	-	0.71875	(0.629,1]	chr20	962090	6	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.18344	4.434535	4.68563	0.00183228	1.13329e-4	0.0469284	0.00463413
chr3	48088172	48088272	2268116	0	-	0.63	(0.629,1]	chr3	219156	719	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.18344	4.434535	4.68563	0.00183228	1.13329e-4	0.0469284	0.00463413
chr10	118334214	118334314	6270740	0	-	0.43	(0.424,0.459]	chr10	560906	76	INTRON	INTRON	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000470476.5:ENST00000469758.5:ENST00000369172.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.3314	4.4345	5.5376	0.00517898	4.83052e-7	0.0992178	3.58077e-5
chr7	29987947	29988046	4674291	0	-	0.454545	(0.424,0.459]	chr7	419457	182	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000409570.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.3314	4.4345	5.5376	0.00517898	4.83052e-7	0.0992178	3.58077e-5
chr8	127824876	127824976	5088247	0	+	0.51	(0.49,0.526]	chr8	455244	46	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	4.38975	4.4340399999999995	4.47833	9.92102e-4	3.41555e-7	0.0276375	2.60631e-5
chr2	86041305	86041388	1502862	0	-	0.578313	(0.57,0.629]	chr2	155764	4	INTRON	INTRON	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.68887	4.433895	5.17892	1.98886e-4	3.48382e-6	0.00746609	2.13641e-4
chr7	43713646	43713746	4707855	0	-	0.38	(0.36,0.392]	chr7	421531	18	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	48	2	3.93494	4.433825000000001	4.93271	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	176933740	176933840	3669519	0	-	0.52	(0.49,0.526]	chr5	333802	141	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	4.38916	4.433745	4.47833	6.34142e-7	3.41555e-7	4.61699e-5	2.60631e-5
chr17	35848012	35848109	8704522	0	+	0.42268	(0.392,0.424]	chr17	824723	9	INTRON	INTRON	TAF15	ENSG00000270647.7	ENST00000603967.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.97957	4.433615	4.88766	4.95123e-6	5.27445e-12	2.96695e-4	8.38002e-10
chr10	11543941	11544041	6047265	0	-	0.49	(0.459,0.49]	chr10	542902	118	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr10	27179353	27179453	5823921	0	+	0.47	(0.459,0.49]	chr10	523496	57	INTRON	INTRON	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10:ENST00000477034.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr10	97365421	97365514	6220836	0	-	0.473118	(0.459,0.49]	chr10	556439	12	INTRON	INTRON	RRP12	ENSG00000052749.14	ENST00000491313.5:ENST00000536831.5:ENST00000370992.9:ENST00000479481.5:ENST00000414986.5:ENST00000315563.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr16	2478248	2478347	8302993	0	+	0.484848	(0.459,0.49]	chr16	772805	27	INTRON	INTRON	TBC1D24	ENSG00000162065.14	ENST00000567020.6:ENST00000630263.2:ENST00000646147.1:ENST00000569874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr16	21493699	21493798	8530585	0	-	0.464646	(0.459,0.49]	chr16	801511	57	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr16	69358257	69358355	8578059	0	-	0.479592	(0.459,0.49]	chr16	808841	3	INTRON	INTRON	TERF2	ENSG00000132604.11	ENST00000254942.8:ENST00000566051.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr20	50922669	50922768	9765349	0	-	0.464646	(0.459,0.49]	chr20	967801	35	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr3	122511564	122511664	2407195	0	-	0.49	(0.459,0.49]	chr3	230779	146	INTRON	INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr6	157891946	157892046	3954546	0	+	0.47	(0.459,0.49]	chr6	358948	29	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr8	67050334	67050432	5185456	0	-	0.489796	(0.459,0.49]	chr8	464706	21	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	3.81712	4.432485	5.04785	0.0120499	2.39418e-5	0.184357	0.00119556
chr16	9114375	9114474	8313960	0	+	0.565657	(0.526,0.57]	chr16	774732	13	INTRON	INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.60468	4.432275000000001	5.25987	1.22926e-5	2.82947e-6	6.62907e-4	1.75466e-4
chr1	22060545	22060643	70551	0	+	0.306122	[0,0.32]	chr1	7023	44	INTRON	INTRON	CDC42	ENSG00000070831.18	ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr1	43738023	43738123	128850	0	+	0.25	[0,0.32]	chr1	15624	17	EXON_MRNA	EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr1	107582356	107582456	714350	0	-	0.28	[0,0.32]	chr1	76479	55	INTRON	INTRON	VAV3	ENSG00000134215.16	ENST00000370056.9:ENST00000527011.5:ENST00000529413.5:ENST00000525460.5:ENST00000415432.6:ENST00000343258.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr1	164568104	164568204	322838	0	+	0.31	[0,0.32]	chr1	36544	42	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000498497.2:ENST00000559578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr10	5714805	5714903	5778735	0	+	0.306122	[0,0.32]	chr10	520625	2	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr10	96913240	96913340	5950607	0	+	0.27	[0,0.32]	chr10	533684	51	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr11	6500856	6500956	6307645	0	+	0.32	[0,0.32]	chr11	565838	15	INTRON	INTRON	DNHD1	ENSG00000179532.13	ENST00000473019.5:ENST00000254579.11:ENST00000354685.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr12	14374505	14374604	6827935	0	+	0.313131	[0,0.32]	chr12	624202	48	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000538511.5:ENST00000545723.1:ENST00000543189.5:ENST00000536444.5:ENST00000542967.1:ENST00000534828.1:ENST00000535132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr12	28248569	28248669	6857252	0	+	0.28	[0,0.32]	chr12	626376	220	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr13	75854275	75854371	7397583	0	+	0.260417	[0,0.32]	chr13	683398	5	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000482116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr14	37390677	37390777	7605351	0	+	0.32	[0,0.32]	chr14	699722	50	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000694965.1:ENST00000553349.1:ENST00000695406.1:ENST00000695407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr14	45155959	45156056	7614096	0	+	0.298969	[0,0.32]	chr14	700489	1	INTRON	INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr14	50334821	50334921	7820739	0	-	0.31	[0,0.32]	chr14	720129	2	SS3_PROX	SS3_PROX:INTRON	CDKL1	ENSG00000100490.10	ENST00000395834.6:ENST00000525911.5:ENST00000534267.5:ENST00000216378.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr14	90270453	90270552	7890906	0	-	0.292929	[0,0.32]	chr14	727007	27	UTR3	UTR3:EXON_MRNA	NRDE2	ENSG00000119720.18	ENST00000354366.8	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr16	69125191	69125291	8577653	0	-	0.32	[0,0.32]	chr16	808742	33	INTRON	INTRON	CHTF8	ENSG00000168802.14	ENST00000448552.7:ENST00000523421.5:ENST00000398235.6:ENST00000567763.1:ENST00000522497.1:ENST00000522091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr16	69139671	69139747	8419428	0	+	0.315789	[0,0.32]	chr16	788694	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000563299.5:ENST00000562237.5:ENST00000567460.5:ENST00000566227.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567235.6:ENST00000568448.1:ENST00000567015.5:ENST00000569014.5:ENST00000564408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr2	127746346	127746446	1561466	0	-	0.27	[0,0.32]	chr2	162103	79	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr20	8433252	8433352	9566657	0	+	0.25	[0,0.32]	chr20	947085	612	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr21	42910315	42910415	9822272	0	+	0.31	[0,0.32]	chr21	973982	14	UTR3	UTR3:EXON_MRNA	NDUFV3	ENSG00000160194.18	ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr3	67512879	67512978	2329301	0	-	0.282828	[0,0.32]	chr3	225831	36	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr3	100047155	100047255	1937260	0	+	0.32	[0,0.32]	chr3	195331	59	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr3	139624819	139624919	2453942	0	-	0.31	[0,0.32]	chr3	235572	250	INTRON	INTRON	NMNAT3	ENSG00000163864.17	ENST00000506254.5:ENST00000339837.9:ENST00000643695.2:ENST00000413939.6:ENST00000646611.1:ENST00000642987.1:ENST00000645290.1:ENST00000296202.11:ENST00000511444.5:ENST00000512391.5:ENST00000645507.1:ENST00000647257.1:ENST00000509291.5:ENST00000514703.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr3	197977601	197977698	2151535	0	+	0.309278	[0,0.32]	chr3	211122	5	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000419117.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000482837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr5	59025283	59025382	3472476	0	-	0.272727	[0,0.32]	chr5	319164	255	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000358923.10:ENST00000503258.5:ENST00000405755.6:ENST00000515011.5:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr6	16418163	16418263	4009115	0	-	0.32	[0,0.32]	chr6	362972	893	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr6	82170561	82170657	4111888	0	-	0.260417	[0,0.32]	chr6	374618	7	UTR3	UTR3:EXON_MRNA	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000508381.1:ENST00000610980.4:ENST00000445419.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr7	44845905	44846002	4711655	0	-	0.298969	[0,0.32]	chr7	422233	22	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr7	82379921	82380021	4761761	0	-	0.29	[0,0.32]	chr7	426511	299	INTRON	INTRON	CACNA2D1	ENSG00000153956.16	ENST00000356860.8:ENST00000356253.9:ENST00000423588.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr7	86942903	86943002	4765025	0	-	0.313131	[0,0.32]	chr7	426753	4	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5:ENST00000398276.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr7	111206510	111206610	4815767	0	-	0.28	[0,0.32]	chr7	431926	2426	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr7	131098571	131098671	4849110	0	-	0.32	[0,0.32]	chr7	434503	102	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr8	66580666	66580766	5184580	0	-	0.31	[0,0.32]	chr8	464612	3	SS3_PROX	SS3_PROX:INTRON	MYBL1	ENSG00000185697.17	ENST00000522677.8:ENST00000517885.5:ENST00000524176.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr8	140742631	140742729	5297813	0	-	0.306122	[0,0.32]	chr8	473034	32	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000521986.5:ENST00000521250.5:ENST00000521981.5:ENST00000521029.5:ENST00000518509.5:ENST00000520917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr9	15464646	15464743	5581670	0	-	0.278351	[0,0.32]	chr9	500581	7	UTR3	UTR3:EXON_MRNA	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chrX	10019460	10019560	10081897	0	+	0.32	[0,0.32]	chrX	1005437	27	INTRON	INTRON	WWC3	ENSG00000047644.20	ENST00000380861.10	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chrX	67603690	67603790	10147092	0	+	0.32	[0,0.32]	chrX	1011540	343	INTRON	INTRON	AR	ENSG00000169083.18	ENST00000612452.5:ENST00000374690.9:ENST00000504326.5:ENST00000514029.5:ENST00000613054.2:ENST00000513847.5:ENST00000396044.8:ENST00000396043.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chrX	75154779	75154879	10380627	0	-	0.31	[0,0.32]	chrX	1030258	396	INTRON	INTRON	ABCB7	ENSG00000131269.19	ENST00000373394.8:ENST00000253577.9:ENST00000666534.1:ENST00000669573.1:ENST00000644766.1:ENST00000339447.8:ENST00000645829.3:ENST00000620875.5:ENST00000663420.1:ENST00000529949.5:ENST00000669388.1:ENST00000534524.5:ENST00000526404.2:ENST00000643632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.39782	4.432195	4.46657	0.00334699	0.00288167	0.0734189	0.0662445
chr12	25245284	25245384	7121500	0	-	0.42	(0.392,0.424]	chr12	653948	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000686969.1:ENST00000556131.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3395	15486	2	4.41634	4.4319500000000005	4.44756	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	46078347	46078446	8948181	0	-	0.454545	(0.424,0.459]	chr17	860827	103	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.89477	4.43143	4.96809	2.5121e-4	6.10851e-5	0.00902798	0.0027377
chr4	108987158	108987258	2989990	0	-	0.43	(0.424,0.459]	chr4	280091	122	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.89477	4.43143	4.96809	2.5121e-4	6.10851e-5	0.00902798	0.0027377
chr6	37955495	37955595	3771942	0	+	0.45	(0.424,0.459]	chr6	345070	251	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.89477	4.43143	4.96809	2.5121e-4	6.10851e-5	0.00902798	0.0027377
chr1	86369421	86369520	680636	0	-	0.464646	(0.459,0.49]	chr1	73950	3	INTRON	INTRON	ODF2L	ENSG00000122417.16	ENST00000359242.7:ENST00000460698.7:ENST00000696297.1:ENST00000696298.1:ENST00000696299.1:ENST00000696300.1:ENST00000696301.1:ENST00000696302.1:ENST00000696309.1:ENST00000696303.1:ENST00000370566.7:ENST00000488879.7:ENST00000696304.1:ENST00000294678.6:ENST00000317336.11:ENST00000696310.1:ENST00000524695.5:ENST00000534092.5:ENST00000496592.5:ENST00000479890.5:ENST00000486557.1:ENST00000478286.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr1	88989830	88989928	682423	0	-	0.479592	(0.459,0.49]	chr1	74190	11	INTRON	INTRON	KYAT3:RBMXL1	ENSG00000137944.18:ENSG00000213516.10	ENST00000370491.7:ENST00000260508.9:ENST00000370486.1:ENST00000321792.5:ENST00000652648.1:ENST00000399794.6:ENST00000413769.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr1	151163786	151163885	765113	0	-	0.474747	(0.459,0.49]	chr1	83259	13	INTRON	INTRON	LYSMD1	ENSG00000163155.12	ENST00000368908.10:ENST00000440902.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr10	129624746	129624846	6022178	0	+	0.49	(0.459,0.49]	chr10	540407	607	INTRON	INTRON	MGMT	ENSG00000170430.10	ENST00000306010.8:ENST00000651593.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr11	47168686	47168740	6603230	0	-	0.462963	(0.459,0.49]	chr11	600975	1	SS3_PROX	SS3_PROX:INTRON	ARFGAP2:ENSG00000270060	ENSG00000149182.15:ENSG00000270060.1	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000524412.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr3	124797117	124797217	2415912	0	-	0.47	(0.459,0.49]	chr3	231619	3	SS3_PROX	SS3_PROX:INTRON	ITGB5	ENSG00000082781.12	ENST00000296181.9:ENST00000481591.5:ENST00000488466.5:ENST00000474838.1:ENST00000496703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr4	7881076	7881176	2832401	0	-	0.47	(0.459,0.49]	chr4	268413	86	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000358461.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr5	143088917	143089017	3347582	0	+	0.48	(0.459,0.49]	chr5	307378	308	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000443674.5:ENST00000418236.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr7	130495051	130495148	4546719	0	+	0.463918	(0.459,0.49]	chr7	409134	1	SS3_PROX	SS3_PROX:INTRON	MEST	ENSG00000106484.16	ENST00000341441.9:ENST00000416162.7:ENST00000427521.6:ENST00000378576.9:ENST00000399874.6:ENST00000433159.5:ENST00000393187.5:ENST00000421001.5:ENST00000223215.10:ENST00000437945.6:ENST00000462132.6:ENST00000437637.6:ENST00000458161.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr9	125843812	125843912	5488590	0	+	0.46	(0.459,0.49]	chr9	490722	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000491787.7:ENST00000447726.6:ENST00000673571.1:ENST00000538998.1:ENST00000491160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	3.88247	4.43114	4.97981	0.0104144	3.36273e-5	0.170122	0.00159406
chr15	64186189	64186288	8212203	0	-	0.494949	(0.49,0.526]	chr15	761576	44	INTRON	INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000634302.1:ENST00000634722.1:ENST00000606793.3:ENST00000634909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	4.22088	4.431075	4.64127	2.4929e-4	5.07325e-6	0.0089494	3.03611e-4
chr1	61175924	61176024	165865	0	+	0.48	(0.459,0.49]	chr1	19206	430	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.31269	4.430985	5.54928	0.00308309	2.53394e-7	0.0699986	1.97194e-5
chr3	10022530	10022629	2168467	0	-	0.50505	(0.49,0.526]	chr3	212014	41	INTRON	INTRON	CIDECP1	ENSG00000186162.11	ENST00000432401.6:ENST00000335507.10:ENST00000424691.2:ENST00000424471.2:ENST00000686656.1:ENST00000433871.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	16	2	3.50606	4.43049	5.35492	0.0010102	1.0002e-6	0.0282228	7.00342e-5
chr1	161872361	161872461	318892	0	+	0.37	(0.36,0.392]	chr1	36131	9	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	4.20207	4.430275	4.65848	8.06613e-7	1.31711e-8	5.78931e-5	1.30852e-6
chr5	60990025	60990125	3179732	0	+	0.31	[0,0.32]	chr5	293736	442	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	4.06239	4.429015	4.79564	5.01883e-4	3.10398e-4	0.0161742	0.0109114
chr7	32503284	32503384	4353113	0	+	0.28	[0,0.32]	chr7	393158	71	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	4.06239	4.429015	4.79564	5.01883e-4	3.10398e-4	0.0161742	0.0109114
chr8	139802834	139802934	5289131	0	-	0.51	(0.49,0.526]	chr8	472641	703	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5:ENST00000521667.5:ENST00000522504.5:ENST00000521700.5:ENST00000519482.1:ENST00000524162.5:ENST00000523777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	4.26631	4.428979999999999	4.59165	2.32598e-6	8.79223e-8	1.50793e-4	7.5628e-6
chr7	26212208	26212307	4331987	0	+	0.212121	[0,0.32]	chr7	391722	1	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.75039	4.42877	5.10715	0.00182075	7.53496e-5	0.0469284	0.00322158
chr11	12880042	12880142	6326966	0	+	0.44	(0.424,0.459]	chr11	567888	2	SS5_PROX	SS5_PROX:INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	35	187	2	4.39358	4.4280349999999995	4.46249	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	47173430	47173527	1442733	0	-	0.42268	(0.392,0.424]	chr2	149672	11	EXON_MRNA	EXON_MRNA:INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	3.96221	4.42774	4.89327	1.96069e-4	3.77123e-8	0.00725539	3.4456e-6
chr5	138572689	138572785	3615319	0	-	0.416667	(0.392,0.424]	chr5	328381	12	INTRON	INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	3.96221	4.42774	4.89327	1.96069e-4	3.77123e-8	0.00725539	3.4456e-6
chr6	46673607	46673706	3790060	0	+	0.424242	(0.392,0.424]	chr6	347734	20	INTRON	INTRON	SLC25A27	ENSG00000153291.16	ENST00000411689.6:ENST00000371347.10:ENST00000604127.5:ENST00000604616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.96221	4.42774	4.89327	1.96069e-4	3.77123e-8	0.00725539	3.4456e-6
chr7	140753333	140753393	4874067	0	-	0.333333	(0.32,0.36]	chr7	436257	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000479537.6:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	59	2	3.84145	4.4275	5.01355	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	53903035	53903133	1447723	0	-	0.459184	(0.424,0.459]	chr2	150057	11	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	56	2	4.16679	4.427384999999999	4.68798	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	28604682	28604782	7931753	0	+	0.29	[0,0.32]	chr15	732280	40	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	39	2	3.63785	4.427255	5.21666	2.50838e-8	1e-12	2.39587e-6	1.73382e-10
chr22	40361770	40361863	9949427	0	+	0.408602	(0.392,0.424]	chr22	989593	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADSL	ENSG00000239900.14	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000637669.1:ENST00000216194.11:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623287.4:ENST00000679609.1:ENST00000680378.1:ENST00000679845.1:ENST00000674592.1:ENST00000636433.1:ENST00000679904.1:ENST00000681003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	4.17079	4.426585	4.68238	3.20208e-7	7.69772e-9	2.47387e-5	7.98016e-7
chr1	151088817	151088917	296612	0	+	0.5	(0.49,0.526]	chr1	31638	3	SS5_PROX	SS5_PROX:INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5:ENST00000368916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr12	19686939	19687039	6841708	0	+	0.5	(0.49,0.526]	chr12	625034	1338	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr12	68653711	68653811	6945293	0	+	0.5	(0.49,0.526]	chr12	635713	2	SS3_PROX	SS3_PROX:INTRON	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000425247.6:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000341355.9:ENST00000538283.5:ENST00000541167.5:ENST00000545270.5:ENST00000538980.5:ENST00000543393.5:ENST00000542018.5:ENST00000540209.5:ENST00000378985.7:ENST00000453560.6:ENST00000534899.5:ENST00000542145.5:ENST00000539091.5:ENST00000535492.5:ENST00000540781.5:ENST00000543697.5:ENST00000545720.6:ENST00000541216.1:ENST00000544639.1:ENST00000541968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr12	110498137	110498228	7277503	0	-	0.516484	(0.49,0.526]	chr12	670767	8	INTRON	INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000552130.6:ENST00000447578.6:ENST00000546588.1:ENST00000549970.5:ENST00000548259.1:ENST00000553128.5:ENST00000551655.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr14	60113119	60113217	7638492	0	+	0.510204	(0.49,0.526]	chr14	703189	21	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000406854.6:ENST00000406949.5:ENST00000556907.1:ENST00000555569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr14	75990575	75990675	7709761	0	+	0.51	(0.49,0.526]	chr14	708672	12	INTRON	INTRON	IFT43	ENSG00000119650.13	ENST00000555677.5:ENST00000679083.1:ENST00000314067.11:ENST00000542766.5:ENST00000555305.5:ENST00000554026.5:ENST00000238628.10:ENST00000555370.5:ENST00000556742.1:ENST00000553338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr17	3633100	3633198	8845979	0	-	0.5	(0.49,0.526]	chr17	844679	24	INTRON	INTRON	SHPK	ENSG00000197417.9	ENST00000225519.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr17	30754195	30754294	8691750	0	+	0.50505	(0.49,0.526]	chr17	822890	105	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr17	38222919	38223019	8921432	0	-	0.52	(0.49,0.526]	chr17	855637	34	INTRON	INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr21	32586912	32587012	9857655	0	-	0.52	(0.49,0.526]	chr21	978415	2	SS5_PROX	SS5_PROX:INTRON	TCP10L	ENSG00000242220.9	ENST00000582575.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr22	40269721	40269821	9948575	0	+	0.51	(0.49,0.526]	chr22	989439	2	SS3_PROX	SS3_PROX:INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000335727.13:ENST00000446273.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr4	183951274	183951374	2806641	0	+	0.5	(0.49,0.526]	chr4	265327	440	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1:ENST00000308497.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr9	136924400	136924500	5528599	0	+	0.51	(0.49,0.526]	chr9	497606	4	SS5_PROX	SS5_PROX:INTRON	TRAF2	ENSG00000127191.18	ENST00000247668.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38975	4.426275	4.4628	9.92102e-4	7.611e-4	0.0276375	0.0225125
chr8	42434904	42435003	5162638	0	-	0.434343	(0.424,0.459]	chr8	462507	43	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	4.20361	4.4261800000000004	4.64875	1.79381e-5	2.48943e-10	9.13813e-4	3.17004e-8
chrX	154365781	154365881	10464263	0	-	0.62	(0.57,0.629]	chrX	1037459	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.91804	4.426145	4.93425	2.91369e-5	2.83782e-5	0.00141183	0.0013972
chr18	22980541	22980639	9078176	0	+	0.438776	(0.424,0.459]	chr18	877072	23	INTRON	INTRON	RBBP8	ENSG00000101773.19	ENST00000582354.5:ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000399721.6:ENST00000360790.9:ENST00000577445.1:ENST00000585177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.80014	4.425765	5.05139	3.54639e-4	4.27641e-5	0.0120332	0.00199812
chr10	58275617	58275717	5861822	0	+	0.31	[0,0.32]	chr10	526190	1	SS3_PROX	SS3_PROX:INTRON	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5:ENST00000489785.5:ENST00000488388.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.6742	4.4257	5.1772	0.00220802	5.87341e-5	0.053911	0.00262682
chr2	20733982	20734081	1393028	0	-	0.313131	[0,0.32]	chr2	144392	320	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1:ENST00000626491.2:ENST00000432947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.6742	4.4257	5.1772	0.00220802	5.87341e-5	0.053911	0.00262682
chrX	71463226	71463323	10157289	0	+	0.237113	[0,0.32]	chrX	1012606	21	INTRON	INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5:ENST00000468167.6:ENST00000683954.1:ENST00000482544.5:ENST00000467309.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.98571	4.4254549999999995	4.8652	4.11137e-4	3.95466e-4	0.0138446	0.0132556
chr12	20510479	20510579	6843469	0	+	0.37	(0.36,0.392]	chr12	625044	1399	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	135	563	2	4.37728	4.42515	4.47302	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	54000826	54000926	6915397	0	+	0.61	(0.57,0.629]	chr12	631188	1	SS5_PROX	SS5_PROX:INTRON	HOXC6:HOXC9	ENSG00000197757.8:ENSG00000180806.5	ENST00000504315.1:ENST00000504557.1:ENST00000509328.1:ENST00000508190.1:ENST00000303450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.91553	4.4248899999999995	4.93425	0.00651627	2.91369e-5	0.114061	0.00141183
chr1	40716913	40717013	120366	0	+	0.43	(0.424,0.459]	chr1	14049	37	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.47733	4.42444	5.37155	2.01844e-4	2.42251e-6	0.00755335	1.53938e-4
chr4	95145458	95145557	2694231	0	+	0.444444	(0.424,0.459]	chr4	256501	136	INTRON	INTRON	BMPR1B	ENSG00000138696.11	ENST00000515059.6:ENST00000672698.1:ENST00000509540.6:ENST00000512312.5:ENST00000440890.7:ENST00000264568.8:ENST00000394931.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.47733	4.42444	5.37155	2.01844e-4	2.42251e-6	0.00755335	1.53938e-4
chr5	366507	366607	3107859	0	+	0.33	(0.32,0.36]	chr5	287793	122	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10:ENST00000652417.2:ENST00000515206.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	4.16471	4.424300000000001	4.68389	9.22891e-5	1.67087e-6	0.00388567	1.09706e-4
chr1	632756	632853	32	0	+	0.443299	(0.424,0.459]	chr1	4	1	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	24	2	4.29889	4.424055	4.54922	1.12945e-5	6.24647e-10	6.02727e-4	7.58161e-8
chr6	57952094	57952193	4096676	0	-	0.494949	(0.49,0.526]	chr6	373313	17	INTRON	INTRON	LINC00680	ENSG00000215190.9	ENST00000450081.5:ENST00000399751.6:ENST00000418368.1:ENST00000418765.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	16	2	3.41836	4.424035	5.42971	0.00136895	5.89334e-7	0.0359623	4.28084e-5
chr7	90269759	90269857	4459486	0	+	0.357143	(0.32,0.36]	chr7	400805	10	INTRON	INTRON	CFAP69	ENSG00000105792.19	ENST00000389297.8:ENST00000427396.5:ENST00000451029.5:ENST00000497910.5:ENST00000463311.1:ENST00000457170.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	4.27744	4.42398	4.57052	6.03386e-5	2.95142e-6	0.00268144	1.84947e-4
chr8	47310407	47310507	4980316	0	+	0.33	(0.32,0.36]	chr8	447010	160	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	4.27744	4.42398	4.57052	6.03386e-5	2.95142e-6	0.00268144	1.84947e-4
chr11	47220042	47220142	6393567	0	+	0.58	(0.57,0.629]	chr11	572857	26	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000614825.4:ENST00000256996.9:ENST00000378601.7:ENST00000622090.4:ENST00000610805.4:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.98068	4.4238	4.86692	0.0053729	4.28317e-5	0.100211	0.0019752
chr17	8255596	8255691	8643043	0	+	0.589474	(0.57,0.629]	chr17	817766	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFAS	ENSG00000178921.14	ENST00000580356.5:ENST00000314666.11:ENST00000625942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.98068	4.4238	4.86692	0.0053729	4.28317e-5	0.100211	0.0019752
chr5	178144608	178144699	3404266	0	+	0.593407	(0.57,0.629]	chr5	312615	1	INTRON	INTRON	RMND5B	ENSG00000145916.19	ENST00000515098.5:ENST00000507575.5:ENST00000313386.9:ENST00000542098.2:ENST00000515360.5:ENST00000513162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.98068	4.4238	4.86692	0.0053729	4.28317e-5	0.100211	0.0019752
chr17	43280654	43280754	8938268	0	-	0.51	(0.49,0.526]	chr17	859071	505	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	21	154	2	4.31698	4.42332	4.52966	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20560510	20560609	6843971	0	+	0.363636	(0.36,0.392]	chr12	625049	34	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4	protein_coding	protein_coding	protein_coding	protein_coding	41	174	2	4.22888	4.42098	4.61308	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	26091668	26091768	956550	0	+	0.41	(0.392,0.424]	chr2	104254	566	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	4.30978	4.419639999999999	4.5295	7.17587e-8	1.33215e-11	6.27925e-6	2.01348e-9
chr1	21098873	21098973	536983	0	-	0.46	(0.459,0.49]	chr1	59079	93	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	3.85937	4.4195899999999995	4.97981	1.54766e-4	3.36273e-5	0.00599593	0.00159406
chr9	34204020	34204120	5370184	0	+	0.49	(0.459,0.49]	chr9	479449	244	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.85937	4.4195899999999995	4.97981	1.54766e-4	3.36273e-5	0.00599593	0.00159406
chr22	29549752	29549847	10009976	0	-	0.568421	(0.526,0.57]	chr22	997011	2	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000397873.6:ENST00000440771.5:ENST00000428374.5:ENST00000414902.5:ENST00000418021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	3.80324	4.418775	5.03431	1.64566e-5	2.21846e-6	8.48927e-4	1.43493e-4
chr15	34310201	34310301	8125416	0	-	0.57	(0.526,0.57]	chr15	751647	107	INTRON	INTRON	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1:ENST00000561120.5:ENST00000559236.5:ENST00000559484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	3.88187	4.418525000000001	4.95518	8.23795e-5	2.63103e-10	0.00351856	3.32606e-8
chr1	33268096	33268195	101658	0	+	0.414141	(0.392,0.424]	chr1	11492	111	INTRON	INTRON	ZNF362	ENSG00000160094.15	ENST00000539719.6:ENST00000483388.5:ENST00000490959.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.15287	4.41755	5.68223	0.00224427	1.931e-7	0.0552099	1.56398e-5
chr12	12559872	12559970	7090741	0	-	0.428571	(0.424,0.459]	chr12	652095	49	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1:ENST00000536236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	3.37907	4.41729	5.45551	2.98646e-4	1.50668e-6	0.0104901	9.96778e-5
chr2	26043725	26043824	956070	0	+	0.434343	(0.424,0.459]	chr2	104254	86	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.37907	4.41729	5.45551	2.98646e-4	1.50668e-6	0.0104901	9.96778e-5
chr1	6882365	6882464	12872	0	+	0.454545	(0.424,0.459]	chr1	1880	76	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000476163.5:ENST00000557126.5:ENST00000461311.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000467267.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	3.56675	4.417154999999999	5.26756	7.38392e-5	8.0232e-6	0.0032006	4.54299e-4
chr12	53386218	53386318	6914475	0	+	0.51	(0.49,0.526]	chr12	630971	22	INTRON	INTRON	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	4.10998	4.41605	4.72212	3.02009e-10	1e-12	3.8111e-8	1.73382e-10
chr17	514146	514246	8829454	0	-	0.49	(0.459,0.49]	chr17	842532	56	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	132	2	4.34899	4.415155	4.48132	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	165857484	165857584	326802	0	+	0.55	(0.526,0.57]	chr1	36725	292	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.48083	4.414115000000001	5.3474	0.00110295	1.05485e-6	0.0304129	7.33447e-5
chr7	7599547	7599646	4304362	0	+	0.444444	(0.424,0.459]	chr7	390223	27	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9:ENST00000493227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	4.36966	4.41407	4.45848	3.96287e-6	5.48586e-9	2.39291e-4	5.79354e-7
chr7	93245202	93245302	4472930	0	+	0.43	(0.424,0.459]	chr7	401749	40	INTRON	INTRON	VPS50	ENSG00000004766.17	ENST00000544910.5:ENST00000251739.9:ENST00000305866.10:ENST00000441602.5:ENST00000438395.5:ENST00000458530.1:ENST00000649152.1:ENST00000485994.5:ENST00000436177.5:ENST00000477935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	3.83155	4.41375	4.99595	1.07528e-5	1.88138e-9	5.78423e-4	2.13412e-7
chr6	32973512	32973612	3757875	0	+	0.43	(0.424,0.459]	chr6	342699	1	SS5_PROX	SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	3.73279	4.412435	5.09208	1.78903e-5	8.32489e-10	9.13813e-4	9.89956e-8
chr1	222950330	222950430	438415	0	+	0.57	(0.526,0.57]	chr1	47285	66	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3:ENST00000284476.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr1	227292124	227292224	876949	0	-	0.53	(0.526,0.57]	chr1	97605	376	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr11	119170280	119170376	6510944	0	+	0.552083	(0.526,0.57]	chr11	589683	6	INTRON	INTRON	NLRX1	ENSG00000160703.16	ENST00000482180.5:ENST00000454811.5:ENST00000409265.8:ENST00000449394.5:ENST00000422249.5:ENST00000474751.6:ENST00000409109.6:ENST00000409991.5:ENST00000292199.6:ENST00000481860.6:ENST00000468765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr12	98526786	98526886	6995547	0	+	0.54	(0.526,0.57]	chr12	638948	99	INTRON	INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr12	123459522	123459613	7041163	0	+	0.549451	(0.526,0.57]	chr12	645833	1	UTR5	UTR5:EXON_MRNA:INTRON	SNRNP35	ENSG00000184209.15	ENST00000527158.2:ENST00000529201.1:ENST00000526639.3:ENST00000412157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr14	21466958	21467058	7774621	0	-	0.57	(0.526,0.57]	chr14	715300	28	INTRON	INTRON	RAB2B	ENSG00000129472.15	ENST00000397762.6:ENST00000649801.1:ENST00000417141.5:ENST00000461909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr14	91077147	91077247	7736360	0	+	0.56	(0.526,0.57]	chr14	710024	159	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr15	33959533	33959633	8122509	0	-	0.57	(0.526,0.57]	chr15	751353	739	INTRON	INTRON	AVEN	ENSG00000169857.9	ENST00000675287.1:ENST00000306730.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr16	11055226	11055325	8317838	0	+	0.535354	(0.526,0.57]	chr16	775143	32	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr16	68325032	68325132	8414933	0	+	0.53	(0.526,0.57]	chr16	788215	2	SS5_PROX	SS5_PROX:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000565761.1:ENST00000567542.5:ENST00000563443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr16	85531076	85531176	8474448	0	+	0.53	(0.526,0.57]	chr16	792098	1718	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr19	16450317	16450417	9451533	0	-	0.55	(0.526,0.57]	chr19	928896	77	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr3	51546342	51546442	1878904	0	+	0.55	(0.526,0.57]	chr3	190752	43	INTRON	INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr5	98918257	98918357	3555074	0	-	0.57	(0.526,0.57]	chr5	323900	128	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr6	15563044	15563144	4006908	0	-	0.54	(0.526,0.57]	chr6	362902	148	INTRON	INTRON	DTNBP1	ENSG00000047579.20	ENST00000344537.10:ENST00000462989.6:ENST00000622898.4:ENST00000355917.7:ENST00000510395.5:ENST00000515875.5:ENST00000513680.5:ENST00000338950.9:ENST00000506844.1:ENST00000511762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr6	42932393	42932492	3780005	0	+	0.555556	(0.526,0.57]	chr6	346124	23	INTRON	INTRON	CNPY3	ENSG00000137161.18	ENST00000372836.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr7	74576252	74576352	4430425	0	+	0.57	(0.526,0.57]	chr7	398189	162	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000470715.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr7	101845857	101845957	4493682	0	+	0.56	(0.526,0.57]	chr7	404874	265	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.38241	4.412050000000001	4.44169	0.00101891	8.21639e-4	0.0276375	0.0238903
chr7	101250703	101250802	4792296	0	-	0.363636	(0.36,0.392]	chr7	430124	58	INTRON	INTRON	FIS1	ENSG00000214253.9	ENST00000474120.5:ENST00000473527.5:ENST00000435848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	4.16662	4.411675	4.65673	7.48315e-4	9.16296e-5	0.0220209	0.00387303
chr2	239982619	239982719	1734068	0	-	0.4	(0.392,0.424]	chr2	178079	4	SS3_PROX	SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	3.47186	4.41139	5.35092	0.00366403	1.74707e-11	0.0766409	2.60849e-9
chr2	73572559	73572659	1076111	0	+	0.39	(0.36,0.392]	chr2	114520	4	CDS	CDS:UTR3:EXON_MRNA	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682801.1:ENST00000682859.1:ENST00000682565.1:ENST00000684548.1:ENST00000683791.1:ENST00000684460.1:ENST00000684656.1:ENST00000423048.5:ENST00000684590.1:ENST00000620466.4:ENST00000651434.1:ENST00000652487.1:ENST00000651057.1:ENST00000651750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.59992	4.4112100000000005	5.2225	0.00266188	2.06042e-5	0.0631592	0.00103061
chr4	169134626	169134725	3084341	0	-	0.383838	(0.36,0.392]	chr4	285571	41	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1:ENST00000511421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.59992	4.4112100000000005	5.2225	0.00266188	2.06042e-5	0.0631592	0.00103061
chr10	24643398	24643498	6083027	0	-	0.36	(0.32,0.36]	chr10	545319	79	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.31131	4.41081	5.51031	0.0111187	2.41138e-6	0.179068	1.53938e-4
chr3	179410597	179410697	2501912	0	-	0.36	(0.32,0.36]	chr3	239392	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6:ENST00000675901.1:ENST00000674927.1:ENST00000465153.2	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.31131	4.41081	5.51031	0.0111187	2.41138e-6	0.179068	1.53938e-4
chr10	121496431	121496531	6274201	0	-	0.4	(0.392,0.424]	chr10	561495	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	42	195	2	4.21328	4.40935	4.60542	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	58027952	58028052	1897665	0	+	0.43	(0.424,0.459]	chr3	193033	187	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	4.20361	4.40892	4.61423	1.79381e-5	4.85762e-7	9.13813e-4	3.605e-5
chr6	143848661	143848758	3906033	0	+	0.453608	(0.424,0.459]	chr6	356486	21	INTRON	INTRON	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	4.20361	4.40892	4.61423	1.79381e-5	4.85762e-7	9.13813e-4	3.605e-5
chrX	24807977	24808076	10107101	0	+	0.434343	(0.424,0.459]	chrX	1007715	131	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	4.20361	4.40892	4.61423	1.79381e-5	4.85762e-7	9.13813e-4	3.605e-5
chr1	15689007	15689107	54840	0	+	0.53	(0.526,0.57]	chr1	5117	40	INTRON	INTRON	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.40949	4.408799999999999	5.40811	0.00141136	6.86579e-7	0.0368074	4.92496e-5
chr2	229180961	229181061	1714750	0	-	0.52	(0.49,0.526]	chr2	176167	246	INTRON	INTRON	PID1	ENSG00000153823.19	ENST00000482518.6:ENST00000392055.8:ENST00000392054.7:ENST00000409462.1:ENST00000354069.6:ENST00000534952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	101	696	2	4.25371	4.407909999999999	4.56211	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	1399306	1399335	492729	0	-	0.62069	(0.57,0.629]	chr1	52569	1	UTR5	UTR5:EXON_MRNA	CCNL2	ENSG00000221978.13	ENST00000400809.8:ENST00000496007.5:ENST00000481223.6:ENST00000488340.5:ENST00000408918.8:ENST00000425598.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.50295	4.407875	5.3128	6.5426e-4	9.9438e-7	0.0199608	7.00342e-5
chr15	49142634	49142733	8157214	0	-	0.383838	(0.36,0.392]	chr15	756464	26	INTRON	INTRON	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.52068	4.4078	5.29492	0.00324516	1.51392e-5	0.0730386	7.85619e-4
chr2	64528901	64529001	1054088	0	+	0.38	(0.36,0.392]	chr2	112267	39	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000695868.1:ENST00000498706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.52068	4.4078	5.29492	0.00324516	1.51392e-5	0.0730386	7.85619e-4
chr3	125364810	125364910	2419308	0	-	0.37	(0.36,0.392]	chr3	231886	71	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.08645	4.40733	4.72821	6.09158e-4	1.23682e-4	0.0188826	0.0049353
chr1	1102966	1103065	491289	0	-	0.444444	(0.424,0.459]	chr1	52031	103	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000379319.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.5463	4.40693	5.26756	0.00153741	8.0232e-6	0.0389999	4.54299e-4
chr2	86172661	86172758	1503852	0	-	0.443299	(0.424,0.459]	chr2	155960	9	INTRON	INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000474969.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.5463	4.40693	5.26756	0.00153741	8.0232e-6	0.0389999	4.54299e-4
chr10	28549948	28550048	5824624	0	+	0.45	(0.424,0.459]	chr10	523623	115	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	4.01593	4.40648	4.79703	2.28148e-4	8.03177e-5	0.00827964	0.00342222
chr1	157993433	157993514	311449	0	+	0.530864	(0.526,0.57]	chr1	34667	3	UTR5	UTR5:EXON_MRNA	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	4.0435	4.40621	4.76892	8.75788e-8	7.20291e-9	7.57468e-6	7.48166e-7
chr7	149600103	149600203	4885556	0	-	0.39	(0.36,0.392]	chr7	437262	361	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	24	2	3.86841	4.40583	4.94325	4.773e-8	2.68414e-8	4.27589e-6	2.52989e-6
chr2	72752559	72752659	1490622	0	-	0.49	(0.459,0.49]	chr2	153931	107	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	4.04656	4.405785	4.76501	1.46149e-4	3.80472e-5	0.00564049	0.00181622
chr2	197494932	197495022	1663956	0	-	0.244444	[0,0.32]	chr2	171000	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	31	2	4.32612	4.405760000000001	4.4854	2.41197e-10	8.69943e-11	3.0924e-8	1.18117e-8
chr3	17088433	17088533	1784171	0	+	0.33	(0.32,0.36]	chr3	183220	70	INTRON	INTRON	PLCL2	ENSG00000154822.18	ENST00000615277.5:ENST00000432376.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.38184	4.405735	4.42963	0.00312289	1.66191e-5	0.0697855	8.55383e-4
chr1	205774040	205774137	846406	0	-	0.463918	(0.459,0.49]	chr1	94213	11	INTRON	INTRON	RAB29	ENSG00000117280.13	ENST00000367139.8:ENST00000235932.8:ENST00000528078.1:ENST00000437324.6:ENST00000446390.6:ENST00000468887.1:ENST00000414729.1:ENST00000492534.1:ENST00000533111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	4.27284	4.40561	4.53838	0.00227779	2.24187e-7	0.0552099	1.8079e-5
chr17	80742387	80742487	8816316	0	+	0.49	(0.459,0.49]	chr17	840414	113	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000572733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.64423	4.405475	5.16672	6.20842e-4	7.74288e-6	0.0191195	4.39068e-4
chr4	39634068	39634168	2876941	0	-	0.49	(0.459,0.49]	chr4	271229	216	INTRON	INTRON	SMIM14	ENSG00000163683.12	ENST00000295958.10:ENST00000511809.5:ENST00000510628.1:ENST00000507613.5:ENST00000505729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	3.64423	4.405475	5.16672	6.20842e-4	7.74288e-6	0.0191195	4.39068e-4
chr7	152786140	152786240	4584455	0	+	0.47	(0.459,0.49]	chr7	413421	25	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.64423	4.405475	5.16672	6.20842e-4	7.74288e-6	0.0191195	4.39068e-4
chr1	8817447	8817543	511792	0	-	0.4375	(0.424,0.459]	chr1	54946	4	UTR5	UTR5:EXON_MRNA:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr10	38435753	38435848	5839906	0	+	0.452632	(0.424,0.459]	chr10	524766	1	INTRON	INTRON	ENSG00000276805	ENSG00000276805.2	ENST00000622550.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr10	72574084	72574183	6160683	0	-	0.454545	(0.424,0.459]	chr10	551479	69	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000642044.1:ENST00000635239.1:ENST00000604238.2:ENST00000603011.5:ENST00000604025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr10	103001810	103001910	5967875	0	+	0.45	(0.424,0.459]	chr10	536037	743	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr12	50794510	50794610	6911047	0	+	0.43	(0.424,0.459]	chr12	630128	58	INTRON	INTRON	ATF1	ENSG00000123268.9	ENST00000552510.5:ENST00000549612.5:ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr13	36990067	36990165	7489147	0	-	0.438776	(0.424,0.459]	chr13	689593	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1:ENST00000681892.1:ENST00000681727.1:ENST00000679397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr13	96363339	96363439	7417221	0	+	0.43	(0.424,0.459]	chr13	683824	2714	INTRON	INTRON	HS6ST3	ENSG00000185352.9	ENST00000376705.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr14	45196822	45196918	7614532	0	+	0.458333	(0.424,0.459]	chr14	700582	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696649.1:ENST00000696648.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1:ENST00000554809.6:ENST00000696659.1:ENST00000696686.1:ENST00000696665.1:ENST00000557110.2:ENST00000555484.2:ENST00000696645.1:ENST00000696651.1:ENST00000553551.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr17	45623723	45623821	8725635	0	+	0.459184	(0.424,0.459]	chr17	829019	13	INTRON	INTRON	LINC02210	ENSG00000204650.14	ENST00000585118.5:ENST00000591271.5:ENST00000582491.5:ENST00000585122.5:ENST00000583740.5:ENST00000455565.5:ENST00000580220.2	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr2	62817393	62817493	1049707	0	+	0.43	(0.424,0.459]	chr2	111823	454	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr20	13798900	13799000	9583019	0	+	0.44	(0.424,0.459]	chr20	947971	4	SS5_PROX	SS5_PROX:INTRON	NDUFAF5	ENSG00000101247.18	ENST00000378081.9:ENST00000378106.10:ENST00000463598.1:ENST00000485738.5:ENST00000477732.5:ENST00000475968.5:ENST00000481249.5:ENST00000476536.5:ENST00000464269.5:ENST00000479716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr22	36234045	36234135	10029172	0	-	0.455556	(0.424,0.459]	chr22	998960	2	SS5_PROX	SS5_PROX:INTRON	APOL2	ENSG00000128335.14	ENST00000358502.10:ENST00000249066.10:ENST00000451256.6:ENST00000529194.5:ENST00000454728.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr4	152524672	152524772	3062091	0	-	0.43	(0.424,0.459]	chr4	284104	725	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr5	37493559	37493659	3152987	0	+	0.44	(0.424,0.459]	chr5	291411	132	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr7	102760675	102760772	4499597	0	+	0.43299	(0.424,0.459]	chr7	405291	24	INTRON	INTRON	FAM185A	ENSG00000222011.9	ENST00000442873.5:ENST00000481697.5:ENST00000487807.5:ENST00000413034.3:ENST00000420217.1:ENST00000409231.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr8	28883157	28883257	5150338	0	-	0.45	(0.424,0.459]	chr8	460976	206	INTRON	INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000520184.1:ENST00000520831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chrX	81293696	81293796	10171122	0	+	0.44	(0.424,0.459]	chrX	1013480	149	INTRON	INTRON	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.01346	4.405245000000001	4.79703	0.00778514	2.28148e-4	0.130982	0.00827964
chr15	67210938	67211038	8221223	0	-	0.44	(0.424,0.459]	chr15	762895	10	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000538028.1:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	4.25372	4.405235	4.55675	5.36136e-8	1.17263e-9	4.85529e-6	1.37264e-7
chr1	119722514	119722604	275703	0	+	0.444444	(0.424,0.459]	chr1	28417	5	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000496756.2:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr10	32932988	32933087	6103620	0	-	0.434343	(0.424,0.459]	chr10	547122	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000472147.1:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr11	70075341	70075441	6432519	0	+	0.44	(0.424,0.459]	chr11	580502	888	INTRON	INTRON	ANO1	ENSG00000131620.18	ENST00000531349.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr11	122353732	122353831	6765766	0	-	0.434343	(0.424,0.459]	chr11	617629	444	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000649216.1:ENST00000670396.1:ENST00000649293.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000527474.5:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000648084.1:ENST00000528381.1:ENST00000656868.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr12	8733696	8733796	6817933	0	+	0.44	(0.424,0.459]	chr12	623309	193	INTRON	INTRON	RIMKLB	ENSG00000166532.16	ENST00000544257.5:ENST00000541044.5:ENST00000539923.5:ENST00000537189.1:ENST00000357529.7:ENST00000535829.6:ENST00000299673.5:ENST00000538135.5:ENST00000619374.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr12	49689922	49690022	7161188	0	-	0.45	(0.424,0.459]	chr12	658671	9	INTRON	INTRON	FMNL3	ENSG00000161791.14	ENST00000335154.10:ENST00000550488.5:ENST00000352151.9:ENST00000550424.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr12	64801369	64801469	6939278	0	+	0.45	(0.424,0.459]	chr12	635177	136	INTRON	INTRON	TBC1D30	ENSG00000111490.15	ENST00000674237.1:ENST00000542120.6:ENST00000456757.6:ENST00000674171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr15	78889901	78889999	8049691	0	+	0.428571	(0.424,0.459]	chr15	744089	22	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr17	16194061	16194161	8883382	0	-	0.43	(0.424,0.459]	chr17	850075	2	SS5_PROX	SS5_PROX:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr17	35003110	35003172	8701874	0	+	0.435484	(0.424,0.459]	chr17	824388	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LIG3	ENSG00000005156.12	ENST00000378526.9:ENST00000262327.9:ENST00000593099.5:ENST00000592244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr17	40039444	40039543	8927779	0	-	0.434343	(0.424,0.459]	chr17	856777	29	INTRON	INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000428757.6:ENST00000580008.5:ENST00000479829.5:ENST00000543759.6:ENST00000585306.5:ENST00000537674.6:ENST00000582023.5:ENST00000580517.5:ENST00000578161.2:ENST00000581054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr19	52528508	52528608	9382135	0	+	0.45	(0.424,0.459]	chr19	914982	2	INTRON	INTRON	ZNF808	ENSG00000198482.14	ENST00000487863.5:ENST00000465448.5:ENST00000359798.9:ENST00000486474.5:ENST00000461779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr2	149361803	149361903	1172501	0	+	0.43	(0.424,0.459]	chr2	124193	307	INTRON	INTRON	LYPD6	ENSG00000187123.15	ENST00000409381.5:ENST00000334166.9:ENST00000418762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr4	56228544	56228644	2625860	0	+	0.43	(0.424,0.459]	chr4	251835	119	INTRON	INTRON	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000629263.3:ENST00000636006.1:ENST00000646253.1:ENST00000264229.11:ENST00000504228.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr4	88868415	88868515	2953417	0	-	0.44	(0.424,0.459]	chr4	277824	120	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000511145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr6	29625311	29625409	4030655	0	-	0.438776	(0.424,0.459]	chr6	364842	9	INTRON	INTRON	GABBR1	ENSG00000204681.11	ENST00000355973.7:ENST00000472823.5:ENST00000377016.8:ENST00000377012.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000485508.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr7	138917743	138917843	4865474	0	-	0.43	(0.424,0.459]	chr7	435475	11	CDS	CDS:EXON_MRNA	KIAA1549	ENSG00000122778.10	ENST00000422774.2:ENST00000440172.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.09426	4.40425	4.71424	0.00651192	3.07139e-4	0.116758	0.0105767
chr17	51259834	51259905	8966601	0	-	0.647887	(0.629,1]	chr17	863065	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.22894	4.40274	5.57654	5.70876e-5	3.61535e-8	0.00258625	3.34936e-6
chr1	91387527	91387626	687207	0	-	0.535354	(0.526,0.57]	chr1	74744	13	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	190	1320	2	4.325	4.4005600000000005	4.47612	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	218269986	218270086	1696085	0	-	0.55	(0.526,0.57]	chr2	174020	1	CDS_START	CDS_START:CDS:EXON_MRNA	AAMP	ENSG00000127837.10	ENST00000444053.5:ENST00000248450.9:ENST00000475678.5:ENST00000489767.5:ENST00000461911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	3.393	4.400555	5.40811	4.3065e-6	6.86579e-7	2.56035e-4	4.92496e-5
chr18	36033707	36033772	9212102	0	-	0.4	(0.392,0.424]	chr18	887248	1	CDS	CDS:UTR3:EXON_MRNA	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	11	2	4.25372	4.400365000000001	4.54701	0.00102713	2.90267e-5	0.0276375	0.00141183
chr8	123080225	123080324	5082140	0	+	0.393939	(0.392,0.424]	chr8	454594	26	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	4.25372	4.400365000000001	4.54701	0.00102713	2.90267e-5	0.0276375	0.00141183
chr10	21862504	21862603	6079151	0	-	0.525253	(0.49,0.526]	chr10	545046	17	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr11	77421146	77421246	6656892	0	-	0.52	(0.49,0.526]	chr11	610478	92	INTRON	INTRON	PAK1	ENSG00000149269.10	ENST00000356341.8:ENST00000278568.8:ENST00000533568.5:ENST00000524847.5:ENST00000526968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr17	38255900	38255999	8921763	0	-	0.525253	(0.49,0.526]	chr17	855643	133	INTRON	INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr17	47941035	47941135	8955060	0	-	0.51	(0.49,0.526]	chr17	861489	3	SS5_PROX	SS5_PROX:INTRON	SP2-AS1	ENSG00000234494.8	ENST00000585280.5:ENST00000451140.6:ENST00000411573.7:ENST00000433001.1	lncRNA	lncRNA	lncRNA	lncRNA	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr2	61882073	61882171	1460336	0	-	0.520408	(0.49,0.526]	chr2	151929	13	INTRON	INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr20	13605899	13605998	9706722	0	-	0.50505	(0.49,0.526]	chr20	960581	49	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5:ENST00000455532.5:ENST00000476108.5:ENST00000483898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr20	34613246	34613346	9728479	0	-	0.5	(0.49,0.526]	chr20	963122	243	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr20	36467555	36467654	9642603	0	+	0.494949	(0.49,0.526]	chr20	952122	18	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10:ENST00000373907.6:ENST00000475894.5:ENST00000482872.5:ENST00000495241.5:ENST00000491207.5:ENST00000482037.5:ENST00000340491.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr3	4568859	4568959	1751864	0	+	0.5	(0.49,0.526]	chr3	179435	474	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr6	163441798	163441897	3974355	0	+	0.50505	(0.49,0.526]	chr6	360477	124	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr8	122832102	122832202	5080321	0	+	0.51	(0.49,0.526]	chr8	454551	498	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr9	108946398	108946497	5684841	0	-	0.494949	(0.49,0.526]	chr9	509588	20	INTRON	INTRON	CTNNAL1	ENSG00000119326.15	ENST00000374595.8:ENST00000325551.9:ENST00000374594.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chrX	136848782	136848882	10447745	0	-	0.5	(0.49,0.526]	chrX	1035595	2	SS3_PROX	SS3_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000561733.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	10	2	4.08493	4.39991	4.71489	0.00395081	1.81396e-4	0.0816719	0.0069054
chr12	25978875	25978975	6848168	0	+	0.4	(0.392,0.424]	chr12	625649	46	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000538081.5:ENST00000615708.4:ENST00000542865.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.47186	4.399765	5.32767	0.00366403	5.95442e-6	0.0766409	3.4453e-4
chr14	80624009	80624109	7876668	0	-	0.4	(0.392,0.424]	chr14	726264	432	INTRON	INTRON	CEP128	ENSG00000100629.17	ENST00000554502.5:ENST00000281129.7:ENST00000555265.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.47186	4.399765	5.32767	0.00366403	5.95442e-6	0.0766409	3.4453e-4
chr7	75365054	75365154	4433410	0	+	0.41	(0.392,0.424]	chr7	398694	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000687422.1:ENST00000684904.1:ENST00000456374.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	11	2	3.47186	4.399765	5.32767	0.00366403	5.95442e-6	0.0766409	3.4453e-4
chr17	69297190	69297274	9002372	0	-	0.321429	(0.32,0.36]	chr17	868350	1	CDS	CDS:EXON_MRNA	ABCA5	ENSG00000154265.16	ENST00000392676.8:ENST00000588877.5:ENST00000586995.5:ENST00000593153.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	38	2	3.29407	4.39925	5.50443	3.13956e-8	1e-12	2.9424e-6	1.72912e-10
chr1	39004818	39004913	111513	0	+	0.505263	(0.49,0.526]	chr1	12839	9	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr1	93190300	93190399	234193	0	+	0.494949	(0.49,0.526]	chr1	23444	34	INTRON	INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000479653.6:ENST00000481180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr13	109780842	109780942	7563604	0	-	0.5	(0.49,0.526]	chr13	695670	242	INTRON	INTRON	IRS2	ENSG00000185950.9	ENST00000375856.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr16	22510460	22510558	8349604	0	+	0.520408	(0.49,0.526]	chr16	778532	27	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5:ENST00000543407.5:ENST00000356156.7:ENST00000541154.5:ENST00000545375.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr17	79982301	79982401	9026694	0	-	0.52	(0.49,0.526]	chr17	871638	291	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000571872.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr5	65800433	65800533	3194787	0	+	0.51	(0.49,0.526]	chr5	294677	69	INTRON	INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000506799.5:ENST00000511299.5:ENST00000509935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr7	74563354	74563454	4430296	0	+	0.52	(0.49,0.526]	chr7	398189	33	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000470715.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chrX	1285464	1285557	10067506	0	+	0.494624	(0.49,0.526]	chrX	1004646	3	SS3_PROX	SS3_PROX:INTRON	CSF2RA	ENSG00000198223.18	ENST00000498153.7:ENST00000381524.8:ENST00000381529.9:ENST00000696230.1:ENST00000493312.6:ENST00000412290.6:ENST00000432318.8:ENST00000494969.7:ENST00000381509.8:ENST00000355432.8:ENST00000355805.7:ENST00000486791.6:ENST00000381500.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.15714	4.399205	4.64127	0.00319561	2.4929e-4	0.0699484	0.0089494
chr15	42212447	42212546	8140996	0	-	0.444444	(0.424,0.459]	chr15	753757	3	INTRON	INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000568067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	4.01972	4.398315	4.77691	4.08028e-8	2.56149e-8	3.72797e-6	2.43432e-6
chr13	48403237	48403337	7376329	0	+	0.42	(0.392,0.424]	chr13	681714	214	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.39796	4.396375	5.39479	0.00439831	4.26975e-6	0.0875511	2.57151e-4
chr15	67670747	67670847	8015890	0	+	0.4	(0.392,0.424]	chr15	741231	3	SS5_PROX	SS5_PROX:INTRON	MAP2K5	ENSG00000137764.20	ENST00000178640.10:ENST00000395476.6:ENST00000354498.9:ENST00000558392.5:ENST00000559262.5:ENST00000340972.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.39796	4.396375	5.39479	0.00439831	4.26975e-6	0.0875511	2.57151e-4
chr1	19190997	19191095	528847	0	-	0.397959	(0.392,0.424]	chr1	58015	31	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.17862	4.395775	4.61293	8.49057e-4	4.01331e-5	0.0240064	0.00187621
chrX	101035312	101035412	10395817	0	-	0.4	(0.392,0.424]	chrX	1031542	3	SS5_PROX	SS5_PROX:INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	4.17862	4.395775	4.61293	8.49057e-4	4.01331e-5	0.0240064	0.00187621
chr20	36895226	36895326	9738478	0	-	0.56	(0.526,0.57]	chr20	964543	9	INTRON	INTRON	SAMHD1	ENSG00000101347.11	ENST00000646673.2:ENST00000645033.1:ENST00000682773.1:ENST00000646904.1:ENST00000644250.2:ENST00000642246.1:ENST00000683766.1:ENST00000647095.1:ENST00000647163.1:ENST00000262878.5:ENST00000646869.1:ENST00000647459.1:ENST00000642186.1:ENST00000643918.1:ENST00000644114.2:ENST00000646066.1:ENST00000683720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	3.91653	4.3952100000000005	4.87389	6.19964e-7	9.8105e-10	4.49218e-5	1.16051e-7
chr12	79856024	79856123	7218822	0	-	0.424242	(0.392,0.424]	chr12	665880	67	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.17862	4.393635	4.60865	4.01331e-5	1.06475e-6	0.00187621	7.43219e-5
chr5	77407557	77407657	3225991	0	+	0.41	(0.392,0.424]	chr5	297974	1	SS5_PROX	SS5_PROX:INTRON	PDE8B	ENSG00000113231.14	ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	4.17862	4.393635	4.60865	4.01331e-5	1.06475e-6	0.00187621	7.43219e-5
chrX	53547172	53547248	10345954	0	-	0.355263	(0.32,0.36]	chrX	1027549	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	3.08717	4.39308	5.69899	0.00535148	3.81705e-7	0.100211	2.90385e-5
chr1	236844371	236844471	463764	0	+	0.48	(0.459,0.49]	chr1	50081	54	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr10	12419480	12419580	5792193	0	+	0.49	(0.459,0.49]	chr10	521723	692	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr10	102350855	102350955	5963016	0	+	0.47	(0.459,0.49]	chr10	535305	2	SS3_PROX	SS3_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000677838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr11	31489039	31489139	6587272	0	-	0.47	(0.459,0.49]	chr11	599106	4	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr12	27529749	27529848	6853667	0	+	0.464646	(0.459,0.49]	chr12	626063	50	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000541633.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr12	112369468	112369568	7285296	0	-	0.49	(0.459,0.49]	chr12	671883	494	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr15	43586389	43586488	8148216	0	-	0.484848	(0.459,0.49]	chr15	754938	11	INTRON	INTRON	PPIP5K1	ENSG00000168781.23	ENST00000334933.8:ENST00000360135.8:ENST00000360301.8:ENST00000420765.6:ENST00000381879.8:ENST00000488768.5:ENST00000453080.5:ENST00000417085.2:ENST00000429176.5:ENST00000431962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr17	29710560	29710660	8904062	0	-	0.47	(0.459,0.49]	chr17	853473	71	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr17	37356610	37356709	8919166	0	-	0.484848	(0.459,0.49]	chr17	855254	109	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4:ENST00000612007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr18	8358203	8358303	9052573	0	+	0.47	(0.459,0.49]	chr18	874866	143	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8:ENST00000577827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr19	32925989	32926089	9477119	0	-	0.49	(0.459,0.49]	chr19	932276	4	SS5_PROX	SS5_PROX:INTRON	CEP89	ENSG00000121289.18	ENST00000305768.10:ENST00000591698.5:ENST00000586984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr20	2957692	2957792	9555119	0	+	0.46	(0.459,0.49]	chr20	946019	16	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr20	35880710	35880809	9638462	0	+	0.484848	(0.459,0.49]	chr20	951778	85	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr20	63609417	63609516	9779253	0	-	0.484848	(0.459,0.49]	chr20	969873	42	INTRON	INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr4	163723556	163723656	3071471	0	-	0.47	(0.459,0.49]	chr4	284865	223	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000274056.11:ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000510696.1:ENST00000503104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr6	4793704	4793804	3692314	0	+	0.46	(0.459,0.49]	chr6	336532	165	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr6	5524184	5524284	3697051	0	+	0.46	(0.459,0.49]	chr6	336658	925	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr6	20803633	20803733	3728484	0	+	0.49	(0.459,0.49]	chr6	338623	220	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr6	73267262	73267361	3815611	0	+	0.474747	(0.459,0.49]	chr6	349385	35	INTRON	INTRON	KHDC1-AS1	ENSG00000229852.4	ENST00000662430.1:ENST00000442007.1:ENST00000671298.1:ENST00000653052.1:ENST00000441363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr6	106449394	106449494	3839200	0	+	0.48	(0.459,0.49]	chr6	351759	880	INTRON	INTRON	CRYBG1	ENSG00000112297.18	ENST00000633556.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr8	24917542	24917638	4949503	0	+	0.46875	(0.459,0.49]	chr8	443310	6	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NEFM	ENSG00000104722.14	ENST00000221166.10:ENST00000518131.5:ENST00000437366.2:ENST00000521540.1:ENST00000433454.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr8	33511184	33511278	5157256	0	-	0.478723	(0.459,0.49]	chr8	461738	9	INTRON	INTRON	TTI2	ENSG00000129696.13	ENST00000613904.1:ENST00000431156.7:ENST00000360742.9:ENST00000520636.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr9	100142450	100142550	5450451	0	+	0.47	(0.459,0.49]	chr9	486785	101	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chrX	41890274	41890374	10329964	0	-	0.48	(0.459,0.49]	chrX	1025546	367	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000644770.1:ENST00000468986.7:ENST00000477823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.20634	4.393050000000001	4.57976	0.00276656	4.98571e-4	0.0641652	0.0160179
chr1	174800171	174800251	356463	0	+	0.4625	(0.459,0.49]	chr1	38943	4	UTR5	UTR5:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr1	233625376	233625476	460240	0	+	0.47	(0.459,0.49]	chr1	49615	105	INTRON	INTRON	KCNK1	ENSG00000135750.15	ENST00000366621.8	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr10	32315726	32315826	6102501	0	-	0.47	(0.459,0.49]	chr10	547013	94	INTRON	INTRON	EPC1	ENSG00000120616.16	ENST00000375110.6:ENST00000319778.11:ENST00000667706.1:ENST00000263062.8:ENST00000479380.2:ENST00000495790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr10	117350389	117350489	6268962	0	-	0.47	(0.459,0.49]	chr10	560810	89	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr11	3796899	3796999	6542156	0	-	0.48	(0.459,0.49]	chr11	594485	1	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000532475.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr11	18566046	18566146	6582272	0	-	0.49	(0.459,0.49]	chr11	598668	3	SS5_PROX	SS5_PROX:INTRON	UEVLD	ENSG00000151116.17	ENST00000396197.8:ENST00000543987.5:ENST00000540666.5:ENST00000535484.5:ENST00000320750.10:ENST00000379387.8:ENST00000396196.6:ENST00000541984.5:ENST00000300038.7:ENST00000540917.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr13	99524301	99524400	7430728	0	+	0.474747	(0.459,0.49]	chr13	684478	38	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr16	78227675	78227775	8438884	0	+	0.49	(0.459,0.49]	chr16	790743	475	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000684070.1:ENST00000683286.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000566662.5:ENST00000355860.7:ENST00000408984.7:ENST00000561846.5:ENST00000563358.5:ENST00000562639.5:ENST00000565791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr17	29923016	29923116	8906193	0	-	0.49	(0.459,0.49]	chr17	853496	737	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000578411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr17	62649277	62649377	8769459	0	+	0.48	(0.459,0.49]	chr17	834492	210	INTRON	INTRON	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000584265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr17	76337707	76337806	9014670	0	-	0.474747	(0.459,0.49]	chr17	870375	49	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8:ENST00000435555.6:ENST00000436498.6:ENST00000494662.5:ENST00000423915.1:ENST00000442767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr17	82130290	82130389	9033107	0	-	0.484848	(0.459,0.49]	chr17	873093	13	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000483145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr18	21694909	21695008	9188895	0	-	0.484848	(0.459,0.49]	chr18	885595	106	INTRON	INTRON	ABHD3	ENSG00000158201.10	ENST00000289119.7:ENST00000580981.5:ENST00000578270.5:ENST00000577891.1:ENST00000579875.5:ENST00000584464.1:ENST00000577928.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr3	15395607	15395706	2184960	0	-	0.464646	(0.459,0.49]	chr3	213558	107	INTRON	INTRON	METTL6	ENSG00000206562.12	ENST00000443029.5:ENST00000584799.1:ENST00000458728.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr4	153518278	153518378	2765536	0	+	0.49	(0.459,0.49]	chr4	262414	440	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr5	34183465	34183563	3437310	0	-	0.479592	(0.459,0.49]	chr5	316047	2	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5:ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr7	66527283	66527383	4723961	0	-	0.48	(0.459,0.49]	chr7	423695	13	EXON_LNCRNA	EXON_LNCRNA	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr7	112786853	112786953	4824467	0	-	0.47	(0.459,0.49]	chr7	432317	15	INTRON	INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.27284	4.392695	4.51255	0.00227779	6.3564e-4	0.0552099	0.0193151
chr3	185388440	185388540	2127512	0	+	0.45	(0.424,0.459]	chr3	209168	247	INTRON	INTRON	MAP3K13	ENSG00000073803.14	ENST00000446828.5:ENST00000447637.1:ENST00000424227.5:ENST00000428617.1:ENST00000443863.5:ENST00000433092.5:ENST00000265026.8:ENST00000438053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	3.16328	4.39253	5.62178	0.0011776	2.83203e-7	0.0313499	2.17914e-5
chr12	54010912	54011011	6915500	0	+	0.515152	(0.49,0.526]	chr12	631195	77	INTRON	INTRON	HOXC6	ENSG00000197757.8	ENST00000504315.1:ENST00000509328.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.57253	4.38968	5.20683	2.38382e-5	3.9703e-6	0.00119556	2.39291e-4
chr7	100120537	100120636	4788859	0	-	0.484848	(0.459,0.49]	chr7	429253	8	INTRON	INTRON	ENSG00000242798	ENSG00000242798.1	ENST00000494221.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	4.28074	4.38812	4.4955	3.57604e-6	5.33756e-7	2.18487e-4	3.92587e-5
chr14	73852620	73852718	7699630	0	+	0.438776	(0.424,0.459]	chr14	707537	1	INTRON	INTRON	PTGR2	ENSG00000140043.12	ENST00000555661.6:ENST00000555228.5:ENST00000555976.5:ENST00000553326.5:ENST00000267568.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	3.98062	4.38749	4.79436	2.41657e-6	7.26175e-12	1.5318e-4	1.12673e-9
chr12	82411119	82411219	6980591	0	+	0.34	(0.32,0.36]	chr12	637833	76	INTRON	INTRON	METTL25	ENSG00000127720.8	ENST00000248306.8:ENST00000547357.5:ENST00000550298.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.97267	4.38744	5.80221	0.00701727	2.13657e-7	0.122029	1.69216e-5
chr5	59145375	59145475	3473682	0	-	0.34	(0.32,0.36]	chr5	319179	539	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	68	259	2	4.35207	4.387075	4.42208	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	42473417	42473517	8142281	0	-	0.46	(0.459,0.49]	chr15	754016	7	INTRON	INTRON	ZNF106	ENSG00000103994.18	ENST00000564754.7:ENST00000565380.5:ENST00000567041.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	4.38459	4.385815	4.38704	2.78194e-9	1.51757e-9	3.0689e-7	1.74447e-7
chr1	32626015	32626115	562265	0	-	0.53	(0.526,0.57]	chr1	63119	37	INTRON	INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000498691.5:ENST00000467652.5:ENST00000476493.6:ENST00000465588.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.07767	4.385645	4.69362	0.00403601	1.98837e-4	0.0817225	0.00746609
chr4	41130764	41130863	2881828	0	-	0.535354	(0.526,0.57]	chr4	271543	122	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000506352.5:ENST00000509446.5:ENST00000508707.5:ENST00000503264.5:ENST00000508676.5:ENST00000503503.5:ENST00000506999.5:ENST00000503555.5:ENST00000511572.5:ENST00000502682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.07767	4.385645	4.69362	0.00403601	1.98837e-4	0.0817225	0.00746609
chr9	78300101	78300201	5408913	0	+	0.56	(0.526,0.57]	chr9	483081	1	SS3_PROX	SS3_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.07767	4.385645	4.69362	0.00403601	1.98837e-4	0.0817225	0.00746609
chr9	124626107	124626207	5733187	0	-	0.53	(0.526,0.57]	chr9	513813	304	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.07767	4.385645	4.69362	0.00403601	1.98837e-4	0.0817225	0.00746609
chr1	1257908	1258007	491729	0	-	0.535354	(0.526,0.57]	chr1	52164	2	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000471154.1:ENST00000422076.5:ENST00000502382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr1	111667444	111667544	258348	0	+	0.53	(0.526,0.57]	chr1	26658	395	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr10	124781162	124781262	6283663	0	-	0.57	(0.526,0.57]	chr10	562296	60	INTRON	INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr11	11562895	11562995	6567846	0	-	0.54	(0.526,0.57]	chr11	596979	861	INTRON	INTRON	GALNT18	ENSG00000110328.6	ENST00000227756.5:ENST00000526064.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr16	58169193	58169292	8565931	0	-	0.535354	(0.526,0.57]	chr16	806694	1	INTRON	INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr17	18917736	18917836	8669407	0	+	0.53	(0.526,0.57]	chr17	820270	2	SS5_PROX	SS5_PROX:INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr18	46877513	46877612	9217005	0	-	0.545455	(0.526,0.57]	chr18	887955	129	INTRON	INTRON	PIAS2	ENSG00000078043.16	ENST00000585916.6:ENST00000398654.7:ENST00000324794.11:ENST00000545673.5:ENST00000592212.5:ENST00000590127.5:ENST00000592011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr2	120883762	120883862	1136398	0	+	0.56	(0.526,0.57]	chr2	121592	859	INTRON	INTRON	GLI2	ENSG00000074047.22	ENST00000472722.5:ENST00000482119.6:ENST00000361492.9:ENST00000341310.10:ENST00000438299.5:ENST00000445186.5:ENST00000452692.5:ENST00000418323.6:ENST00000437950.5:ENST00000452319.6:ENST00000433812.1:ENST00000360874.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr3	136618251	136618351	2447393	0	-	0.53	(0.526,0.57]	chr3	234908	134	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr7	5669995	5670095	4618250	0	-	0.56	(0.526,0.57]	chr7	415953	171	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr7	140467205	140467305	4871982	0	-	0.57	(0.526,0.57]	chr7	436044	66	INTRON	INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5:ENST00000467513.5:ENST00000494939.1:ENST00000498535.1:ENST00000473444.1:ENST00000475180.5:ENST00000481705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	4.13626	4.385065	4.63387	0.00339748	2.57391e-4	0.0728314	0.00911512
chr6	111873064	111873161	4170191	0	-	0.845361	(0.629,1]	chr6	379694	2	UTR5	UTR5:EXON_MRNA	FYN	ENSG00000010810.17	ENST00000354650.7:ENST00000368682.7:ENST00000368678.8:ENST00000518295.5:ENST00000523238.5:ENST00000484067.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.8818	4.385045	4.88829	0.0064023	2.76563e-5	0.114061	0.00135477
chr5	59574667	59574766	3477996	0	-	0.40404	(0.392,0.424]	chr5	319260	134	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	33	2	4.34544	4.384535	4.42363	1.49344e-8	2.53753e-12	1.47914e-6	4.16121e-10
chr17	72664760	72664860	9003127	0	-	0.41	(0.392,0.424]	chr17	868446	151	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	3.95129	4.384435	4.81758	1.741e-7	6.29448e-8	1.41117e-5	5.585e-6
chr1	155967756	155967849	779550	0	-	0.677419	(0.629,1]	chr1	86225	5	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000696600.1:ENST00000696601.1:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000609707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.9362	4.38411	4.83202	0.0052327	4.13761e-5	0.0992178	0.00192437
chr8	141000879	141000937	5300440	0	-	0.724138	(0.629,1]	chr8	473233	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.9362	4.38411	4.83202	0.0052327	4.13761e-5	0.0992178	0.00192437
chr10	30923388	30923487	6097991	0	-	0.252525	[0,0.32]	chr10	546657	1	INTRON	INTRON	ZNF438	ENSG00000183621.15	ENST00000436087.7:ENST00000331737.10:ENST00000361310.7:ENST00000413025.5:ENST00000442986.5:ENST00000452305.5:ENST00000538351.6:ENST00000375311.1	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	3.5909	4.38405	5.1772	5.87341e-5	2.75424e-5	0.00262682	0.00135919
chr1	149926275	149926375	760917	0	-	0.44	(0.424,0.459]	chr1	82416	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	15	82	2	4.24459	4.383545	4.5225	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	16201164	16201263	9786891	0	+	0.353535	(0.32,0.36]	chr21	970551	56	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000653669.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000663510.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000658075.1:ENST00000669537.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000655197.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1	lncRNA	lncRNA	lncRNA	lncRNA	4	24	2	2.84883	4.3828	5.91677	0.00354866	1e-12	0.0776459	1.72912e-10
chr1	62847632	62847732	173999	0	+	0.4	(0.392,0.424]	chr1	19722	57	INTRON	INTRON	ATG4C	ENSG00000125703.15	ENST00000317868.9:ENST00000371120.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr1	93654819	93654919	696669	0	-	0.41	(0.392,0.424]	chr1	75450	61	INTRON	INTRON	BCAR3	ENSG00000137936.18	ENST00000260502.11:ENST00000370244.5:ENST00000370243.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr1	95125381	95125481	238721	0	+	0.41	(0.392,0.424]	chr1	24010	38	INTRON	INTRON	TLCD4	ENSG00000152078.10	ENST00000370203.9:ENST00000456991.5:ENST00000455656.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr12	6362808	6362875	7076339	0	-	0.41791	(0.392,0.424]	chr12	649648	2	INTRON	INTRON	SCNN1A	ENSG00000111319.13	ENST00000360168.7:ENST00000228916.7:ENST00000540037.5:ENST00000338748.9:ENST00000396966.6:ENST00000543768.1:ENST00000538979.5:ENST00000542966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr12	116182364	116182464	7290743	0	-	0.41	(0.392,0.424]	chr12	672490	705	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr14	45155859	45155959	7614095	0	+	0.41	(0.392,0.424]	chr14	700488	4	SS5_PROX	SS5_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1:ENST00000696683.1:ENST00000696684.1:ENST00000696685.1:ENST00000696664.1:ENST00000696663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr14	63488146	63488246	7846024	0	-	0.4	(0.392,0.424]	chr14	722476	339	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr14	95147822	95147921	7907942	0	-	0.414141	(0.392,0.424]	chr14	728861	57	INTRON	INTRON	DICER1	ENSG00000100697.16	ENST00000343455.8:ENST00000529720.2:ENST00000674628.2:ENST00000675540.2:ENST00000531162.7:ENST00000526495.6:ENST00000696734.1:ENST00000696733.1:ENST00000393063.6:ENST00000675995.1:ENST00000556045.6:ENST00000696736.1:ENST00000532939.3:ENST00000696737.1:ENST00000529206.1:ENST00000696739.1:ENST00000696740.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr15	91937723	91937822	8083267	0	+	0.40404	(0.392,0.424]	chr15	747789	209	INTRON	INTRON	SLCO3A1	ENSG00000176463.14	ENST00000318445.11:ENST00000553653.5:ENST00000424469.2:ENST00000555769.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr17	77368091	77368191	8806817	0	+	0.42	(0.392,0.424]	chr17	838954	439	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr18	23471457	23471555	9080125	0	+	0.408163	(0.392,0.424]	chr18	877266	36	INTRON	INTRON	RIOK3	ENSG00000101782.15	ENST00000339486.8:ENST00000581585.5:ENST00000581302.5:ENST00000577501.5:ENST00000584130.1:ENST00000581339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr19	58494705	58494805	9548467	0	-	0.42	(0.392,0.424]	chr19	945212	107	INTRON	INTRON	SLC27A5	ENSG00000083807.10	ENST00000595851.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr2	58208831	58208929	1455036	0	-	0.408163	(0.392,0.424]	chr2	151095	24	EXON_MRNA	EXON_MRNA:INTRON	FANCL	ENSG00000115392.13	ENST00000696400.1:ENST00000403295.8:ENST00000696492.1:ENST00000427708.7:ENST00000696314.1:ENST00000696315.1:ENST00000696454.1:ENST00000696508.1:ENST00000696548.1:ENST00000696542.1:ENST00000696432.1:ENST00000696319.1:ENST00000403676.6:ENST00000696433.1:ENST00000696434.1:ENST00000696499.1:ENST00000696564.1:ENST00000402135.8:ENST00000696546.1:ENST00000233741.9:ENST00000696316.1:ENST00000696378.1:ENST00000696435.1:ENST00000696493.1:ENST00000696543.1:ENST00000696544.1:ENST00000696545.1:ENST00000696565.1:ENST00000696620.1:ENST00000696621.1:ENST00000696635.1:ENST00000696364.1:ENST00000696634.1:ENST00000696317.1:ENST00000696622.1:ENST00000696467.1:ENST00000696547.1:ENST00000449070.6:ENST00000696305.1:ENST00000417361.2:ENST00000696338.1:ENST00000696361.1:ENST00000696318.1:ENST00000696371.1:ENST00000696409.1:ENST00000696410.1:ENST00000696455.1:ENST00000696468.1:ENST00000696527.1:ENST00000696567.1:ENST00000696324.1:ENST00000696566.1:ENST00000696623.1:ENST00000446381.6:ENST00000696469.1:ENST00000696624.1:ENST00000696411.1:ENST00000470506.2:ENST00000696358.1:ENST00000696373.1:ENST00000696394.1:ENST00000696320.1:ENST00000696395.1:ENST00000696341.1:ENST00000696340.1:ENST00000696374.1:ENST00000696396.1:ENST00000696342.1:ENST00000696325.1:ENST00000696399.1:ENST00000696398.1:ENST00000696306.1:ENST00000696397.1:ENST00000696360.1:ENST00000696344.1:ENST00000696343.1:ENST00000696637.1:ENST00000696362.1:ENST00000696528.1:ENST00000696497.1:ENST00000696326.1:ENST00000696625.1:ENST00000696510.1:ENST00000696438.1:ENST00000696496.1:ENST00000696509.1:ENST00000696569.1:ENST00000696457.1:ENST00000696458.1:ENST00000696473.1:ENST00000696495.1:ENST00000696415.1:ENST00000696472.1:ENST00000696494.1:ENST00000696459.1:ENST00000696498.1:ENST00000696416.1:ENST00000696530.1:ENST00000696460.1:ENST00000696570.1:ENST00000696531.1:ENST00000696307.1:ENST00000696345.1:ENST00000696377.1:ENST00000696417.1:ENST00000696594.1:ENST00000696595.1:ENST00000696379.1:ENST00000696346.1:ENST00000696380.1:ENST00000696347.1:ENST00000696461.1:ENST00000696596.1:ENST00000696549.1:ENST00000696597.1:ENST00000696550.1:ENST00000696598.1:ENST00000696321.1:ENST00000696476.1:ENST00000696477.1:ENST00000696511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr2	65007106	65007205	1054932	0	+	0.424242	(0.392,0.424]	chr2	112337	27	INTRON	INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr3	23229498	23229597	1786030	0	+	0.40404	(0.392,0.424]	chr3	183394	118	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6:ENST00000427371.3:ENST00000628311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr3	27435492	27435590	2219809	0	-	0.418367	(0.392,0.424]	chr3	215148	10	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000295736.9:ENST00000428386.5:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428179.1:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr3	188771573	188771673	2137203	0	+	0.4	(0.392,0.424]	chr3	209708	109	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr5	78466535	78466635	3227304	0	+	0.41	(0.392,0.424]	chr5	298093	68	INTRON	INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8:ENST00000506858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr6	127453881	127453981	4187110	0	-	0.41	(0.392,0.424]	chr6	381157	1	CDS_START	CDS_START:CDS:EXON_MRNA	KIAA0408	ENSG00000189367.15	ENST00000483725.8:ENST00000487331.2:ENST00000472335.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr7	35809864	35809964	4365207	0	+	0.42	(0.392,0.424]	chr7	393718	82	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr7	110669011	110669111	4810387	0	-	0.4	(0.392,0.424]	chr7	431911	36	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr8	65625230	65625329	5182987	0	-	0.424242	(0.392,0.424]	chr8	464453	25	INTRON	INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr9	2830461	2830561	5534999	0	-	0.4	(0.392,0.424]	chr9	498690	1	SS5_PROX	SS5_PROX:INTRON	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chrX	81235303	81235403	10170536	0	+	0.41	(0.392,0.424]	chrX	1013464	322	INTRON	INTRON	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.15239	4.3826599999999996	4.61293	0.00572894	8.49057e-4	0.105396	0.0240064
chr12	54161544	54161644	7171904	0	-	0.45	(0.424,0.459]	chr12	660508	314	INTRON	INTRON	SMUG1	ENSG00000123415.16	ENST00000635234.1:ENST00000634429.1:ENST00000635546.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	18	2	4.11093	4.38222	4.65351	5.36389e-5	1.8873e-7	0.00243585	1.54537e-5
chr1	93616389	93616488	696282	0	-	0.40404	(0.392,0.424]	chr1	75434	24	INTRON	INTRON	BCAR3	ENSG00000137936.18	ENST00000260502.11:ENST00000370244.5:ENST00000370243.1:ENST00000479503.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr12	92127364	92127464	7234165	0	-	0.42	(0.392,0.424]	chr12	666979	403	INTRON	INTRON	LINC01619	ENSG00000257242.9	ENST00000551843.5:ENST00000549802.5:ENST00000552106.5:ENST00000551563.6:ENST00000546975.4:ENST00000553207.5:ENST00000552277.3	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr15	43358654	43358751	8146373	0	-	0.42268	(0.392,0.424]	chr15	754564	6	UTR3	UTR3:EXON_MRNA	ZSCAN29	ENSG00000140265.14	ENST00000396976.6:ENST00000684362.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr2	153980338	153980438	1179632	0	+	0.4	(0.392,0.424]	chr2	124737	353	INTRON	INTRON	GALNT13	ENSG00000144278.15	ENST00000392825.8:ENST00000409237.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr20	35843144	35843244	9638074	0	+	0.41	(0.392,0.424]	chr20	951720	4	SS5_PROX	SS5_PROX:INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr21	29317620	29317720	9796513	0	+	0.42	(0.392,0.424]	chr21	971177	119	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr4	157082783	157082882	2768296	0	+	0.393939	(0.392,0.424]	chr4	262801	43	INTRON	INTRON	GLRB	ENSG00000109738.11	ENST00000541722.5:ENST00000264428.9:ENST00000515642.5:ENST00000512619.5:ENST00000506411.5:ENST00000509282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr4	186719089	186719188	3106465	0	-	0.414141	(0.392,0.424]	chr4	287634	89	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7:ENST00000509647.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr6	25565019	25565119	3746918	0	+	0.4	(0.392,0.424]	chr6	339412	78	INTRON	INTRON	CARMIL1	ENSG00000079691.18	ENST00000329474.7:ENST00000635618.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr6	127446502	127446597	4187032	0	-	0.4	(0.392,0.424]	chr6	381139	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	KIAA0408	ENSG00000189367.15	ENST00000483725.8:ENST00000368281.1:ENST00000465254.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr7	133896434	133896534	4557224	0	+	0.41	(0.392,0.424]	chr7	409444	3	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000460346.5:ENST00000472020.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr9	107312631	107312729	5461304	0	+	0.397959	(0.392,0.424]	chr9	487822	5	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chrX	123711149	123711249	10421385	0	-	0.41	(0.392,0.424]	chrX	1034020	38	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000433883.1:ENST00000419789.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.21741	4.382210000000001	4.54701	0.00496616	0.00102713	0.0964485	0.0276375
chr8	67059396	67059430	5185553	0	-	0.470588	(0.459,0.49]	chr8	464735	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5:ENST00000518747.1:ENST00000517793.1:ENST00000517406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	48	2	3.71677	4.382055	5.04734	3.08295e-10	1e-12	3.88433e-8	1.73382e-10
chr12	132758624	132758724	7325512	0	-	0.52	(0.49,0.526]	chr12	677080	36	EXON_MRNA	EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.72059	4.381185	5.04178	2.73826e-4	1.57703e-5	0.00975361	8.20905e-4
chr5	181224099	181224188	3409230	0	+	0.573034	(0.57,0.629]	chr5	313393	1	CDS	CDS:EXON_MRNA:INTRON	TRIM41	ENSG00000146063.20	ENST00000515499.5:ENST00000315073.10:ENST00000351937.9:ENST00000508930.1:ENST00000503114.1:ENST00000515223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	4.35349	4.380955	4.40842	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	19889884	19889984	67190	0	+	0.35	(0.32,0.36]	chr1	6439	1	SS3_PROX	SS3_PROX:INTRON	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr1	217497936	217498017	857735	0	-	0.320988	(0.32,0.36]	chr1	95395	2	SS5_PROX	SS5_PROX:INTRON	GPATCH2	ENSG00000092978.11	ENST00000366935.8:ENST00000489246.6:ENST00000470014.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr1	243208817	243208917	906051	0	-	0.36	(0.32,0.36]	chr1	100534	76	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr10	96899198	96899297	5950463	0	+	0.333333	(0.32,0.36]	chr10	533673	127	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr11	3720130	3720211	6541368	0	-	0.358025	(0.32,0.36]	chr11	594387	2	INTRON	INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000530516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr11	43422271	43422371	6379649	0	+	0.36	(0.32,0.36]	chr11	571501	71	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr11	62857652	62857752	6408568	0	+	0.35	(0.32,0.36]	chr11	575416	8	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr11	85497306	85497405	6697556	0	-	0.323232	(0.32,0.36]	chr11	612022	272	INTRON	INTRON	DLG2	ENSG00000150672.18	ENST00000376104.7:ENST00000650630.1:ENST00000472545.6:ENST00000530260.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr13	77148572	77148670	7545192	0	-	0.346939	(0.32,0.36]	chr13	693712	20	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000695078.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695086.1:ENST00000466564.3:ENST00000486679.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr14	90956936	90957036	7895644	0	-	0.34	(0.32,0.36]	chr14	727372	90	INTRON	INTRON	RPS6KA5	ENSG00000100784.12	ENST00000614987.5:ENST00000648062.1:ENST00000536315.6:ENST00000556178.5:ENST00000418736.6:ENST00000554206.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr15	28257461	28257561	8112075	0	-	0.34	(0.32,0.36]	chr15	750563	2	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr15	59679255	59679339	8196194	0	-	0.345238	(0.32,0.36]	chr15	759967	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BNIP2	ENSG00000140299.13	ENST00000267859.8:ENST00000607373.6:ENST00000612191.4:ENST00000415213.7:ENST00000448414.5:ENST00000560458.5:ENST00000417312.5:ENST00000557987.5:ENST00000477543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr17	19944308	19944408	8893768	0	-	0.34	(0.32,0.36]	chr17	851682	20	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000460046.2:ENST00000582611.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr17	28823812	28823911	8900151	0	-	0.323232	(0.32,0.36]	chr17	852757	115	INTRON	INTRON	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000579381.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr17	29772408	29772508	8904682	0	-	0.34	(0.32,0.36]	chr17	853479	111	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr17	40250697	40250797	8714492	0	+	0.33	(0.32,0.36]	chr17	826489	298	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr18	2966209	2966308	9167465	0	-	0.343434	(0.32,0.36]	chr18	883425	50	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1:ENST00000584915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr18	21816610	21816710	9075442	0	+	0.36	(0.32,0.36]	chr18	876897	4	INTRON	INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7:ENST00000577749.5:ENST00000578260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr19	34227488	34227588	9326651	0	+	0.36	(0.32,0.36]	chr19	904121	2	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3:ENST00000590416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr2	9227926	9228026	929971	0	+	0.35	(0.32,0.36]	chr2	102095	203	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr2	186278069	186278169	1643088	0	-	0.35	(0.32,0.36]	chr2	168909	626	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000661574.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr2	231754870	231754970	1722720	0	-	0.35	(0.32,0.36]	chr2	176834	153	INTRON	INTRON	PDE6D	ENSG00000156973.14	ENST00000287600.9:ENST00000409772.5:ENST00000428104.2:ENST00000486044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr20	33532261	33532361	9628065	0	+	0.36	(0.32,0.36]	chr20	950386	416	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr3	101513185	101513241	2375891	0	-	0.339286	(0.32,0.36]	chr3	228452	2	UTR5	UTR5:EXON_MRNA	SENP7	ENSG00000138468.16	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000348610.3	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr3	122381158	122381257	2406213	0	-	0.343434	(0.32,0.36]	chr3	230677	83	INTRON	INTRON	MIX23	ENSG00000160124.9	ENST00000291458.9:ENST00000497726.5:ENST00000479899.5:ENST00000498466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr3	152275065	152275165	2043555	0	+	0.34	(0.32,0.36]	chr3	204333	49	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr3	173931795	173931895	2087045	0	+	0.36	(0.32,0.36]	chr3	206424	1236	INTRON	INTRON	NLGN1	ENSG00000169760.18	ENST00000695368.1:ENST00000457714.5:ENST00000361589.8:ENST00000415045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr4	121853938	121854026	3009012	0	-	0.340909	(0.32,0.36]	chr4	281613	5	INTRON	INTRON	BBS7	ENSG00000138686.10	ENST00000264499.9:ENST00000506636.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr4	183112618	183112718	2802278	0	+	0.35	(0.32,0.36]	chr4	264975	126	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr5	14173519	14173618	3122006	0	+	0.333333	(0.32,0.36]	chr5	289171	293	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr5	32398132	32398230	3432268	0	-	0.336735	(0.32,0.36]	chr5	315730	4	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr5	87357067	87357167	3532823	0	-	0.34	(0.32,0.36]	chr5	322286	378	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr6	29629991	29630084	4030708	0	-	0.322581	(0.32,0.36]	chr6	364860	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GABBR1	ENSG00000204681.11	ENST00000472823.5:ENST00000377016.8:ENST00000377034.9:ENST00000491829.5:ENST00000494877.5:ENST00000376977.7:ENST00000485508.5:ENST00000489385.5:ENST00000467259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr7	77756021	77756120	4442375	0	+	0.333333	(0.32,0.36]	chr7	399667	56	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr7	127784687	127784787	4535616	0	+	0.36	(0.32,0.36]	chr7	407861	629	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr7	158805265	158805365	4912740	0	-	0.34	(0.32,0.36]	chr7	439116	58	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr8	94429873	94429971	5220037	0	-	0.336735	(0.32,0.36]	chr8	467086	23	UTR3	UTR3:EXON_MRNA:INTRON	FSBP	ENSG00000265817.4	ENST00000517506.2:ENST00000481490.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr9	76460976	76461076	5403962	0	+	0.35	(0.32,0.36]	chr9	482480	4	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000488136.5:ENST00000442371.5:ENST00000444201.6:ENST00000376730.5:ENST00000480311.5:ENST00000648797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr9	132922273	132922373	5757881	0	-	0.34	(0.32,0.36]	chr9	516837	3	SS3_PROX	SS3_PROX:INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000440111.6:ENST00000545250.5:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000647462.1:ENST00000647078.1:ENST00000644997.1:ENST00000645129.1:ENST00000403810.6:ENST00000642854.1:ENST00000643691.1:ENST00000475903.6:ENST00000461879.5:ENST00000645904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chrX	70474359	70474459	10154626	0	+	0.34	(0.32,0.36]	chrX	1011951	179	INTRON	INTRON	DLG3	ENSG00000082458.12	ENST00000374360.8:ENST00000194900.8:ENST00000463252.5:ENST00000374355.7:ENST00000542398.1:ENST00000489733.5:ENST00000494493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chrX	71158552	71158652	10155515	0	+	0.35	(0.32,0.36]	chrX	1012241	28	INTRON	INTRON	NLGN3	ENSG00000196338.15	ENST00000687470.1:ENST00000688950.1:ENST00000689857.1:ENST00000687568.1:ENST00000685718.1:ENST00000689968.1:ENST00000395855.7:ENST00000692905.1:ENST00000358741.4:ENST00000374051.7:ENST00000536169.6:ENST00000688566.1:ENST00000687220.1:ENST00000692338.1:ENST00000690133.1:ENST00000690293.1:ENST00000476589.2:ENST00000691045.1:ENST00000692468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chrX	132432552	132432652	10434590	0	-	0.34	(0.32,0.36]	chrX	1034948	191	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370857.7:ENST00000370844.5:ENST00000370839.7:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chrX	150369327	150369426	10237293	0	+	0.353535	(0.32,0.36]	chrX	1019427	54	INTRON	INTRON	MAMLD1	ENSG00000013619.15	ENST00000468306.1:ENST00000262858.8:ENST00000683453.1:ENST00000426613.5:ENST00000682016.1:ENST00000682253.1:ENST00000683696.1:ENST00000370401.7:ENST00000432680.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.32952	4.379575	4.42963	0.00388505	0.00312289	0.0816719	0.0697855
chr15	61997476	61997575	8206507	0	-	0.444444	(0.424,0.459]	chr15	760743	53	INTRON	INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.35302	4.379505	4.40599	0.00154565	2.54851e-8	0.0389999	2.42771e-6
chr12	28447664	28447764	6859264	0	+	0.58	(0.57,0.629]	chr12	626451	344	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.21821	4.3765350000000005	4.53486	0.00185391	3.95206e-4	0.0459841	0.0135724
chr16	88782404	88782504	8620889	0	-	0.61	(0.57,0.629]	chr16	813378	326	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.21821	4.3765350000000005	4.53486	0.00185391	3.95206e-4	0.0459841	0.0135724
chr19	4822315	4822415	9414956	0	-	0.6	(0.57,0.629]	chr19	921356	34	INTRON	INTRON	TICAM1	ENSG00000127666.11	ENST00000248244.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	4.21821	4.3765350000000005	4.53486	0.00185391	3.95206e-4	0.0459841	0.0135724
chr5	151802644	151802742	3360523	0	+	0.602041	(0.57,0.629]	chr5	309140	14	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.21821	4.3765350000000005	4.53486	0.00185391	3.95206e-4	0.0459841	0.0135724
chr11	48042703	48042803	6395614	0	+	0.49	(0.459,0.49]	chr11	573261	613	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.81712	4.37629	4.93546	0.0120499	1.66582e-9	0.184357	1.91035e-7
chr15	52234772	52234871	8171333	0	-	0.606061	(0.57,0.629]	chr15	757845	17	INTRON	INTRON	MYO5C	ENSG00000128833.13	ENST00000261839.12:ENST00000560809.5:ENST00000558902.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.28422	4.376245000000001	4.46827	0.00145677	5.2773e-4	0.0382827	0.0167673
chr17	81547835	81547928	9030311	0	-	0.623656	(0.57,0.629]	chr17	872250	11	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000425898.2:ENST00000327787.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	4.28422	4.376245000000001	4.46827	0.00145677	5.2773e-4	0.0382827	0.0167673
chr18	11996754	11996854	9062725	0	+	0.61	(0.57,0.629]	chr18	875744	146	INTRON	INTRON	IMPA2	ENSG00000141401.12	ENST00000588752.5:ENST00000589238.5:ENST00000625802.2:ENST00000590107.5:ENST00000269159.8:ENST00000383376.9:ENST00000590138.1:ENST00000588927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	4.28422	4.376245000000001	4.46827	0.00145677	5.2773e-4	0.0382827	0.0167673
chr2	130159926	130160023	1564448	0	-	0.597938	(0.57,0.629]	chr2	162469	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	4.28422	4.376245000000001	4.46827	0.00145677	5.2773e-4	0.0382827	0.0167673
chr16	53162136	53162236	8385512	0	+	0.42	(0.392,0.424]	chr16	783751	42	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	3.93446	4.3760200000000005	4.81758	6.29448e-8	6.33922e-9	5.585e-6	6.67285e-7
chr1	53947049	53947128	150475	0	+	0.582278	(0.57,0.629]	chr1	18317	1	INTRON	INTRON	LRRC42	ENSG00000116212.15	ENST00000371368.5:ENST00000371370.8:ENST00000319223.8:ENST00000444987.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.91804	4.37519	4.83234	2.83782e-5	9.24905e-10	0.0013972	1.09461e-7
chr1	157993352	157993433	311448	0	+	0.469136	(0.459,0.49]	chr1	34667	2	UTR5	UTR5:EXON_MRNA	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	3.71677	4.37484	5.03291	3.08295e-10	2.04219e-10	3.88433e-8	2.64445e-8
chr11	71929324	71929424	6436346	0	+	0.51	(0.49,0.526]	chr11	581220	2	SS5_PROX	SS5_PROX:INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000393711.7:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.63247	4.3743	5.11613	3.91053e-4	1.03252e-5	0.0131535	5.57702e-4
chr5	134564171	134564251	3320610	0	+	0.475	(0.459,0.49]	chr5	304796	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	JADE2	ENSG00000043143.22	ENST00000431355.2:ENST00000282605.8:ENST00000681547.2:ENST00000361895.6:ENST00000402835.5:ENST00000680418.1:ENST00000395003.5:ENST00000681820.1:ENST00000512386.6:ENST00000612830.2:ENST00000681019.1:ENST00000681498.1:ENST00000430087.2:ENST00000470876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	3.63487	4.374235	5.1136	1.69661e-5	9.08458e-11	8.71289e-4	1.22932e-8
chr1	235120399	235120494	889781	0	-	0.494737	(0.49,0.526]	chr1	99091	1	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	3.81887	4.37414	4.92941	1.1017e-4	4.32628e-5	0.00452792	0.00200309
chr16	21428342	21428440	8529892	0	-	0.520408	(0.49,0.526]	chr16	801358	25	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000534903.1:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	3.81887	4.37414	4.92941	1.1017e-4	4.32628e-5	0.00452792	0.00200309
chr5	33441670	33441767	3143590	0	+	0.515464	(0.49,0.526]	chr5	290198	4	UTR5	UTR5:EXON_MRNA:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000502508.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2:ENST00000626210.1:ENST00000506040.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.81887	4.37414	4.92941	1.1017e-4	4.32628e-5	0.00452792	0.00200309
chr20	44895135	44895235	9658698	0	+	0.5	(0.49,0.526]	chr20	954169	70	INTRON	INTRON	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000428262.1:ENST00000445830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	3.70699	4.374105	5.04122	6.7032e-6	6.36415e-11	3.89775e-4	8.81514e-9
chr14	45240483	45240581	7816789	0	-	0.357143	(0.32,0.36]	chr14	719458	24	INTRON	INTRON	MIS18BP1	ENSG00000129534.14	ENST00000310806.9:ENST00000454990.5:ENST00000453142.3:ENST00000627697.1:ENST00000494512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	4.02125	4.373875	4.7265	6.12159e-4	3.53532e-4	0.0189985	0.0122629
chr17	31122159	31122259	8694798	0	+	0.36	(0.32,0.36]	chr17	823257	264	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	4.02125	4.373875	4.7265	6.12159e-4	3.53532e-4	0.0189985	0.0122629
chr7	87874797	87874897	4769277	0	-	0.38	(0.36,0.392]	chr7	427090	138	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	3.67918	4.37309	5.067	8.30344e-6	4.85192e-9	4.69588e-4	5.20289e-7
chr10	97446169	97446261	5951553	0	+	0.75	(0.629,1]	chr10	533753	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ZDHHC16	ENSG00000171307.19	ENST00000370854.7:ENST00000393760.6:ENST00000414567.5:ENST00000459777.5:ENST00000466895.5:ENST00000370846.8:ENST00000352634.8:ENST00000353979.7:ENST00000370842.6:ENST00000345745.9:ENST00000462924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.60202	4.3726	5.14318	1.20607e-4	3.40591e-6	0.00489816	2.08838e-4
chr17	19933256	19933353	8893650	0	-	0.525773	(0.49,0.526]	chr17	851657	9	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.35534	4.372545000000001	4.38975	9.92102e-4	1.32027e-6	0.0276375	8.96115e-5
chr17	82065703	82065795	9032541	0	-	0.891304	(0.629,1]	chr17	872884	2	UTR5	UTR5:EXON_MRNA	DUS1L	ENSG00000169718.18	ENST00000306796.10:ENST00000582529.5:ENST00000578907.5:ENST00000578176.5:ENST00000577907.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.54506	4.371925	5.19879	2.07184e-4	2.01813e-6	0.00773072	1.31579e-4
chr8	31058371	31058447	4966989	0	+	0.302632	[0,0.32]	chr8	444946	1	UTR5	UTR5:EXON_MRNA	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	71	2	3.83211	4.370755	4.9094	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	68548304	68548404	6429378	0	+	0.48	(0.459,0.49]	chr11	580025	1	SS5_PROX	SS5_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000529907.5:ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5:ENST00000531244.1:ENST00000529172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	3.97601	4.37051	4.76501	1.46149e-4	7.08572e-7	0.00564049	5.07254e-5
chr1	51839630	51839725	616788	0	-	0.347368	(0.32,0.36]	chr1	68626	17	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.59803	4.3688	5.13957	0.00267453	6.71414e-5	0.0637459	0.00291649
chr10	101998711	101998810	6240148	0	-	0.414141	(0.392,0.424]	chr10	558444	30	INTRON	INTRON	ARMH3	ENSG00000120029.13	ENST00000370033.9:ENST00000456149.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	3.22139	4.3686	5.51581	6.91878e-6	1.07176e-6	4.01658e-4	7.36955e-5
chr15	76300834	76300934	8242112	0	-	0.44	(0.424,0.459]	chr15	765532	47	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	32	2	4.01972	4.36845	4.71718	2.56149e-8	3.1417e-11	2.43432e-6	4.5174e-9
chr2	202286466	202286565	1266154	0	+	0.353535	(0.32,0.36]	chr2	131981	16	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000492688.5:ENST00000478941.1:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.90902	4.368425	4.82783	5.03152e-4	4.57616e-4	0.0161742	0.0150584
chr5	119137772	119137871	3290622	0	+	0.353535	(0.32,0.36]	chr5	302433	30	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000512281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.90902	4.368425	4.82783	5.03152e-4	4.57616e-4	0.0161742	0.0150584
chrX	120549943	120550042	10419611	0	-	0.383838	(0.36,0.392]	chrX	1033729	15	INTRON	INTRON	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000681908.1:ENST00000681652.1:ENST00000679432.1:ENST00000680474.1:ENST00000404115.8:ENST00000681869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	14	2	3.10651	4.367179999999999	5.62785	8.23373e-4	5.69775e-7	0.0238997	4.16055e-5
chr16	30380103	30380203	8368778	0	+	0.44	(0.424,0.459]	chr16	781098	13	INTRON	INTRON	ZNF48	ENSG00000180035.13	ENST00000495929.3:ENST00000528032.5:ENST00000622647.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	4.01972	4.36698	4.71424	3.07139e-4	2.56149e-8	0.0105767	2.43432e-6
chr12	120347445	120347514	7300182	0	-	0.681159	(0.629,1]	chr12	673743	1	CDS	CDS:EXON_MRNA	MSI1	ENSG00000135097.7	ENST00000257552.7:ENST00000546985.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.33899	4.366715	4.39444	8.51164e-4	6.41849e-4	0.0245129	0.0196462
chr17	76103692	76103787	9013817	0	-	0.715789	(0.629,1]	chr17	870213	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOC7	ENSG00000182473.22	ENST00000589210.6:ENST00000332065.9:ENST00000335146.11:ENST00000607838.5:ENST00000405575.8:ENST00000405068.3:ENST00000589507.6:ENST00000406660.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.33899	4.366715	4.39444	8.51164e-4	6.41849e-4	0.0245129	0.0196462
chr7	2612646	2612745	4286619	0	+	0.666667	(0.629,1]	chr7	388759	26	UTR3	UTR3:EXON_MRNA	IQCE	ENSG00000106012.18	ENST00000623361.3:ENST00000402050.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.33899	4.366715	4.39444	8.51164e-4	6.41849e-4	0.0245129	0.0196462
chr3	155886341	155886441	2047183	0	+	0.51	(0.49,0.526]	chr3	204527	151	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.16666	4.365415	5.56417	4.28046e-4	1.40942e-7	0.0141511	1.1686e-5
chrX	133724834	133724934	10441602	0	-	0.32	[0,0.32]	chrX	1035108	202	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000684880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	4.27127	4.365195	4.45912	1.18389e-5	1.03327e-6	6.49715e-4	7.23599e-5
chr4	87034182	87034282	2681535	0	+	0.56	(0.526,0.57]	chr4	255323	264	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	3.4704	4.365135	5.25987	4.12702e-5	2.82947e-6	0.00192437	1.75466e-4
chr11	65542001	65542092	6625055	0	-	0.549451	(0.526,0.57]	chr11	605818	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LTBP3	ENSG00000168056.18	ENST00000530866.6:ENST00000301873.11:ENST00000526825.6:ENST00000689505.1:ENST00000688764.1:ENST00000529582.6:ENST00000322147.8:ENST00000532932.5:ENST00000529189.5:ENST00000530785.5:ENST00000685178.1:ENST00000528516.5:ENST00000526927.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.88187	4.364905	4.84794	8.23795e-5	6.50622e-5	0.00351856	0.00284455
chr5	177048512	177048611	3399246	0	+	0.545455	(0.526,0.57]	chr5	311917	36	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000504600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.69524	4.364775	5.03431	3.03531e-4	1.64566e-5	0.0107298	8.48927e-4
chr3	100724136	100724235	1941144	0	+	0.30303	[0,0.32]	chr3	195676	37	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	4.19171	4.364045	4.53638	8.41855e-6	1.59164e-6	4.71048e-4	1.07558e-4
chr11	32587011	32587045	6365073	0	+	0.441176	(0.424,0.459]	chr11	570085	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	2.95561	4.36323	5.77085	1.5695e-4	5.32819e-8	0.00600355	4.72329e-6
chr12	39342124	39342224	7141574	0	-	0.3	[0,0.32]	chr12	655886	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	2.92674	4.36312	5.7995	8.106e-5	1e-12	0.00345286	1.72912e-10
chr10	60911090	60911170	6144429	0	-	0.375	(0.36,0.392]	chr10	549858	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOBTB1	ENSG00000072422.17	ENST00000357917.4:ENST00000337910.10	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.75844	4.36281	4.96718	1.24104e-4	6.393e-5	0.0049353	0.00282504
chr7	90352515	90352615	4460108	0	+	0.4	(0.392,0.424]	chr7	400945	3	SS3_PROX	SS3_PROX:INTRON	GTPBP10	ENSG00000105793.16	ENST00000453512.5:ENST00000421719.5:ENST00000426366.5:ENST00000450619.5:ENST00000257659.12:ENST00000417207.5:ENST00000477972.1:ENST00000380058.7:ENST00000222511.11:ENST00000439832.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	3.54722	4.36266	5.1781	1.52245e-4	2.48959e-5	0.0058275	0.00122627
chr18	21344192	21344292	9072228	0	+	0.48	(0.459,0.49]	chr18	876596	1014	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	4.21222	4.362385	4.51255	6.3564e-4	9.25181e-6	0.0193151	5.14007e-4
chr8	127838361	127838461	5088382	0	+	0.42	(0.392,0.424]	chr8	455244	181	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	3.7075	4.362235	5.01697	9.40427e-4	7.03248e-9	0.0266969	7.35448e-7
chr5	150387901	150387953	3357046	0	+	0.5	(0.49,0.526]	chr5	308618	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000674413.1:ENST00000514442.5:ENST00000506767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	4.13201	4.361829999999999	4.59165	8.48086e-6	8.79223e-8	4.76746e-4	7.5628e-6
chr8	38234393	38234461	4970671	0	+	0.470588	(0.459,0.49]	chr8	445571	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000527834.5:ENST00000533100.5:ENST00000397166.7:ENST00000519857.5:ENST00000526237.5:ENST00000526370.1:ENST00000528358.5:ENST00000529642.1:ENST00000532222.5:ENST00000520272.6:ENST00000527415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.39129	4.361735	5.33218	0.00244536	1.78412e-6	0.0587626	1.1709e-4
chr18	21110817	21110910	9187696	0	-	0.462366	(0.459,0.49]	chr18	885465	1	CDS_START	CDS_START:CDS:EXON_MRNA	ROCK1	ENSG00000067900.8	ENST00000399799.3:ENST00000635540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.32099	4.36084	5.40069	2.2051e-4	1.15324e-6	0.00809052	7.95154e-5
chr1	182865049	182865149	373035	0	+	0.37	(0.36,0.392]	chr1	40357	45	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	4.06231	4.360775	4.65924	5.79555e-11	1.51945e-12	8.06986e-9	2.56583e-10
chr17	44178663	44178763	8941135	0	-	0.6	(0.57,0.629]	chr17	859579	3	SS3_PROX	SS3_PROX:INTRON	ASB16-AS1	ENSG00000267080.7	ENST00000588785.6:ENST00000585457.6:ENST00000591166.1:ENST00000667684.1:ENST00000669052.1:ENST00000656516.1:ENST00000667107.1:ENST00000592897.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	3.85355	4.360235	4.86692	5.98045e-5	4.28317e-5	0.00266913	0.0019752
chr7	2181275	2181375	4609911	0	-	0.43	(0.424,0.459]	chr7	415101	60	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	35	2	3.82759	4.359085	4.89058	8.77883e-9	1.29384e-11	9.05568e-7	1.96019e-9
chr1	107579964	107580064	714326	0	-	0.55	(0.526,0.57]	chr1	76479	31	INTRON	INTRON	VAV3	ENSG00000134215.16	ENST00000370056.9:ENST00000527011.5:ENST00000529413.5:ENST00000525460.5:ENST00000415432.6:ENST00000343258.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.80992	4.358969999999999	4.90802	1.14789e-4	4.81512e-5	0.00467969	0.00220626
chr1	93079931	93080031	233467	0	+	0.55	(0.526,0.57]	chr1	23338	4	SS5_PROX	SS5_PROX:INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	4.11947	4.35888	4.59829	4.99738e-8	4.7259e-8	4.53531e-6	4.23605e-6
chr20	38427375	38427442	9742831	0	-	0.537313	(0.526,0.57]	chr20	965220	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS5_PROX:INTRON	SNHG17:SNORA71A	ENSG00000196756.14:ENSG00000225091.3	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5:ENST00000364729.1	snoRNA	snoRNA	snoRNA:lncRNA	snoRNA:retained_intron:lncRNA	3	31	2	4.19532	4.358715	4.52211	5.88525e-6	4.3785e-11	3.44579e-4	6.17372e-9
chr5	95920744	95920844	3551987	0	-	0.32	[0,0.32]	chr5	323467	8	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	4.31876	4.35829	4.39782	0.00334699	5.15904e-5	0.0734189	0.00235512
chr15	56443781	56443854	8184279	0	-	0.342466	(0.32,0.36]	chr15	759113	3	CDS	CDS:EXON_MRNA	MNS1	ENSG00000138587.6	ENST00000260453.4	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	4.31864	4.357815	4.39699	8.67854e-8	5.41613e-9	7.51259e-6	5.73495e-7
chrX	123686147	123686247	10421125	0	-	0.38	(0.36,0.392]	chrX	1033983	2	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.20352	4.357785	5.51205	0.0019364	2.39077e-6	0.0476694	1.5204e-4
chr14	55059861	55059961	7626333	0	+	0.3	[0,0.32]	chr14	701735	1	SS3_PROX	SS3_PROX:INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.75039	4.357505	4.96462	0.00182075	5.55329e-8	0.0469284	5.01996e-6
chr17	28581547	28581644	8898301	0	-	0.494845	(0.49,0.526]	chr17	852265	9	INTRON	INTRON	ENSG00000258472:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000577259.1:ENST00000378976.5:ENST00000578230.5:ENST00000580083.6:ENST00000531839.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	4.0726	4.356935	4.64127	2.4929e-4	1.93553e-5	0.0089494	9.87839e-4
chr5	150651632	150651732	3358441	0	+	0.52	(0.49,0.526]	chr5	308806	14	UTR3	UTR3:EXON_MRNA:INTRON	SYNPO	ENSG00000171992.13	ENST00000394243.5:ENST00000522122.1:ENST00000307662.5:ENST00000519664.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.0726	4.356935	4.64127	2.4929e-4	1.93553e-5	0.0089494	9.87839e-4
chr1	10460694	10460793	515720	0	-	0.484848	(0.459,0.49]	chr1	55379	43	UTR3	UTR3:EXON_MRNA	DFFA	ENSG00000160049.12	ENST00000377038.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.31269	4.35669	5.40069	0.00308309	1.15324e-6	0.0699986	7.95154e-5
chr11	129171515	129171615	6777803	0	-	0.46	(0.459,0.49]	chr11	618734	67	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.31269	4.35669	5.40069	0.00308309	1.15324e-6	0.0699986	7.95154e-5
chr14	70340666	70340765	7860115	0	-	0.464646	(0.459,0.49]	chr14	723898	111	INTRON	INTRON	COX16	ENSG00000133983.16	ENST00000389912.7:ENST00000557612.5:ENST00000555601.1:ENST00000555276.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.31269	4.35669	5.40069	0.00308309	1.15324e-6	0.0699986	7.95154e-5
chr5	94680936	94681035	3255867	0	+	0.262626	[0,0.32]	chr5	299933	16	INTRON	INTRON	SLF1	ENSG00000133302.13	ENST00000265140.10:ENST00000450932.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.98571	4.35557	4.72543	3.95466e-4	1.35488e-6	0.0132556	9.17479e-5
chr6	97260512	97260610	4135975	0	-	0.367347	(0.36,0.392]	chr6	376961	20	EXON_MRNA	EXON_MRNA:INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5:ENST00000482634.1:ENST00000508976.5:ENST00000511335.5:ENST00000506256.5:ENST00000484170.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	54	2	3.99326	4.35557	4.71788	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	2272278	2272378	8843188	0	-	0.53	(0.526,0.57]	chr17	844168	62	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.22891	4.355295	5.48168	0.00393565	2.6732e-7	0.0798064	2.09843e-5
chr22	20522654	20522753	9897874	0	+	0.555556	(0.526,0.57]	chr22	982600	33	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	3.22891	4.355295	5.48168	0.00393565	2.6732e-7	0.0798064	2.09843e-5
chr5	59123495	59123595	3473463	0	-	0.33	(0.32,0.36]	chr5	319179	320	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	28	2	3.49303	4.355035	5.21704	5.15679e-6	1e-12	3.03741e-4	1.72912e-10
chr21	46111476	46111576	9834564	0	+	0.65	(0.629,1]	chr21	975721	1	CDS_START	CDS_START:CDS:EXON_MRNA	COL6A2	ENSG00000142173.16	ENST00000300527.9:ENST00000310645.9:ENST00000436769.5:ENST00000397763.5:ENST00000409416.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.71102	4.354995	5.99897	3.98595e-5	9.87725e-11	0.00187459	1.32987e-8
chr3	197977988	197978085	2151539	0	+	0.28866000000000003	[0,0.32]	chr3	211122	9	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000419117.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000482837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.27638	4.354975	5.43357	0.0118823	8.40147e-6	0.184357	4.71048e-4
chr6	111589760	111589859	4167844	0	-	0.292929	[0,0.32]	chr6	379516	90	INTRON	INTRON	TRAF3IP2	ENSG00000056972.20	ENST00000368761.11:ENST00000340026.10:ENST00000359831.8:ENST00000392556.8:ENST00000532708.5:ENST00000528599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	3.12911	4.354835	5.58056	0.00484145	1.7046e-6	0.0964485	1.13343e-4
chr11	128985784	128985878	6775927	0	-	0.319149	[0,0.32]	chr11	618646	4	SS5_PROX	SS5_PROX:INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000526162.5:ENST00000392657.7:ENST00000524655.5:ENST00000527272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	4.24175	4.35416	4.46657	0.00288167	6.90565e-5	0.0662445	0.00300464
chr14	55594787	55594886	7628032	0	+	0.30303	[0,0.32]	chr14	701875	141	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000557267.1:ENST00000395314.8:ENST00000554567.1:ENST00000555498.5:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	4.24175	4.35416	4.46657	0.00288167	6.90565e-5	0.0662445	0.00300464
chr4	41045193	41045293	2880969	0	-	0.22	[0,0.32]	chr4	271525	115	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000506352.5:ENST00000509446.5:ENST00000508707.5:ENST00000503264.5:ENST00000508676.5:ENST00000503503.5:ENST00000506999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	4.24175	4.35416	4.46657	0.00288167	6.90565e-5	0.0662445	0.00300464
chr6	165709418	165709518	4267832	0	-	0.66	(0.629,1]	chr6	386874	463	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.12843	4.35346	4.57849	0.00233396	2.2493e-4	0.0563219	0.00827964
chr17	29292586	29292686	8902770	0	-	0.76	(0.629,1]	chr17	853236	45	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.18344	4.353065	4.52269	0.00183228	3.10525e-4	0.0469284	0.0106515
chr17	82094819	82094919	9032762	0	-	0.64	(0.629,1]	chr17	873021	1	SS5_PROX	SS5_PROX:INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000635197.1:ENST00000637525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.18344	4.353065	4.52269	0.00183228	3.10525e-4	0.0469284	0.0106515
chr11	100750576	100750676	6474162	0	+	0.44	(0.424,0.459]	chr11	585015	117	INTRON	INTRON	ARHGAP42	ENSG00000165895.19	ENST00000298815.13:ENST00000524892.7:ENST00000534060.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	4.29889	4.35244	4.40599	0.00154565	1.12945e-5	0.0389999	6.02727e-4
chr16	57644508	57644604	8400991	0	+	0.520833	(0.49,0.526]	chr16	785663	9	INTRON	INTRON	ADGRG1	ENSG00000205336.14	ENST00000565587.5:ENST00000568791.5:ENST00000570044.5:ENST00000567553.5:ENST00000565314.5:ENST00000564912.5:ENST00000562673.5:ENST00000564907.5:ENST00000568908.5:ENST00000568909.5:ENST00000566778.5:ENST00000561988.5:ENST00000561872.5:ENST00000562101.5:ENST00000567835.5:ENST00000563548.5:ENST00000569372.5:ENST00000562003.5:ENST00000561833.5:ENST00000569531.5:ENST00000561696.5:ENST00000565013.5:ENST00000562414.5:ENST00000561969.5:ENST00000563445.5:ENST00000562608.5:ENST00000565338.5:ENST00000567702.5:ENST00000456916.5:ENST00000567154.5:ENST00000388813.9:ENST00000563007.5:ENST00000562558.6:ENST00000566271.6:ENST00000568645.5:ENST00000563374.5:ENST00000673126.2:ENST00000562631.7:ENST00000568234.5:ENST00000566164.5:ENST00000565770.5:ENST00000672974.1:ENST00000568979.5:ENST00000567397.5:ENST00000569992.5:ENST00000566123.5:ENST00000562682.5:ENST00000561782.5:ENST00000564783.5:ENST00000564729.5:ENST00000565976.6:ENST00000566888.5:ENST00000565539.5:ENST00000566508.5:ENST00000567915.5:ENST00000569132.5:ENST00000564103.5:ENST00000562467.5:ENST00000568700.1:ENST00000540164.6:ENST00000568531.5:ENST00000564360.5:ENST00000568074.5:ENST00000563414.5:ENST00000568618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.41836	4.34989	5.28142	0.00136895	2.46593e-6	0.0359623	1.54892e-4
chr18	11996854	11996954	9062726	0	+	0.5	(0.49,0.526]	chr18	875744	147	INTRON	INTRON	IMPA2	ENSG00000141401.12	ENST00000588752.5:ENST00000589238.5:ENST00000625802.2:ENST00000590107.5:ENST00000269159.8:ENST00000383376.9:ENST00000590138.1:ENST00000588927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.41836	4.34989	5.28142	0.00136895	2.46593e-6	0.0359623	1.54892e-4
chr15	45162196	45162296	8150323	0	-	0.57	(0.526,0.57]	chr15	755404	86	INTRON	INTRON	ENSG00000259539	ENSG00000259539.1	ENST00000558039.1	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	4.2573	4.349495	4.44169	8.21639e-4	2.46218e-6	0.0238903	1.55994e-4
chr15	40412611	40412679	7948075	0	+	0.5	(0.49,0.526]	chr15	734230	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	IVD	ENSG00000128928.10	ENST00000650656.1:ENST00000651168.1:ENST00000487418.8:ENST00000479013.7:ENST00000473112.6:ENST00000484250.1:ENST00000481262.6:ENST00000491554.6:ENST00000497252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.98392	4.349405	4.71489	1.81396e-4	3.07012e-5	0.0069054	0.00150487
chr15	59363901	59364001	8195684	0	-	0.51	(0.49,0.526]	chr15	759880	911	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.98392	4.349405	4.71489	1.81396e-4	3.07012e-5	0.0069054	0.00150487
chr14	63921421	63921521	7650135	0	+	0.48	(0.459,0.49]	chr14	703894	118	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000341472.9:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.21669	4.348644999999999	5.4806	5.63284e-4	4.11395e-7	0.0178211	3.09732e-5
chrX	73823721	73823820	10373444	0	-	0.353535	(0.32,0.36]	chrX	1029941	32	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1	lncRNA	lncRNA	lncRNA	lncRNA	4	21	2	4.06155	4.348215	4.63488	7.26161e-6	2.94198e-9	4.19717e-4	3.24824e-7
chr8	43147063	43147163	4979222	0	+	0.38	(0.36,0.392]	chr8	446863	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HGSNAT	ENSG00000165102.15	ENST00000379644.9:ENST00000517319.1:ENST00000520704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	37	2	4.19692	4.34766	4.4984	9.1492e-11	1.28797e-12	1.23546e-8	2.19859e-10
chr11	65440447	65440547	6416045	0	+	0.37	(0.36,0.392]	chr11	577189	178	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000691530.1:ENST00000693747.1	lncRNA	lncRNA	lncRNA	lncRNA	52	209	2	4.1054	4.34685	4.5883	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	48646002	48646094	9522631	0	-	0.586957	(0.57,0.629]	chr19	940355	5	UTR5	UTR5:EXON_MRNA	CA11	ENSG00000063180.9	ENST00000084798.9	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	3.57977	4.34679	5.11381	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	141612275	141612373	4572182	0	+	0.44898	(0.424,0.459]	chr7	410855	6	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.23804	4.346775	5.45551	0.00649971	1.50668e-6	0.114061	9.96778e-5
chr17	43262857	43262957	8938090	0	-	0.51	(0.49,0.526]	chr17	859071	327	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	21	146	2	4.16343	4.346545	4.52966	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	154338840	154338940	304024	0	+	0.4	(0.392,0.424]	chr1	32845	9	INTRON	INTRON	ATP8B2	ENSG00000143515.20	ENST00000368489.6:ENST00000672630.1:ENST00000426445.1:ENST00000696573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	3.10951	4.346325	5.58314	4.28069e-4	7.33041e-7	0.0141511	5.19799e-5
chr5	54195920	54196020	3466309	0	-	0.46	(0.459,0.49]	chr5	318484	236	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	3.00648	4.34523	5.68398	0.0112903	5.57196e-8	0.181488	4.89622e-6
chr13	48355119	48355219	7375835	0	+	0.37	(0.36,0.392]	chr13	681654	57	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000525036.1:ENST00000467505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	4.30331	4.343534999999999	4.38376	2.34074e-5	1.64803e-5	0.00116109	8.48507e-4
chr4	41257511	41257608	2610153	0	+	0.814433	(0.629,1]	chr4	250015	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	2.74504	4.34333	5.94162	5.51845e-6	2.38878e-10	3.2607e-4	3.06926e-8
chr12	50019166	50019243	7162689	0	-	0.506494	(0.49,0.526]	chr12	658932	2	INTRON	INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000547905.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5:ENST00000551145.5:ENST00000548824.5:ENST00000548644.5:ENST00000551260.5:ENST00000546723.5:ENST00000552921.5:ENST00000548247.1:ENST00000552157.5:ENST00000546764.5:ENST00000549777.5:ENST00000550651.5:ENST00000552004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.72059	4.342425	4.96426	2.73826e-4	2.39614e-10	0.00975361	3.07606e-8
chr2	144520455	144520555	1578363	0	-	0.59	(0.57,0.629]	chr2	163373	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZEB2	ENSG00000169554.23	ENST00000637267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	4.00133	4.341325	4.68132	1.50304e-4	1.78261e-5	0.00577248	9.13271e-4
chr3	52343089	52343189	1881398	0	+	0.58	(0.57,0.629]	chr3	191217	103	INTRON	INTRON	DNAH1	ENSG00000114841.18	ENST00000420323.7:ENST00000486752.5:ENST00000497875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	4.00133	4.341325	4.68132	1.50304e-4	1.78261e-5	0.00577248	9.13271e-4
chr6	42069300	42069396	3777072	0	+	0.53125	(0.526,0.57]	chr6	345702	3	INTRON	INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000687601.1:ENST00000688007.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	4.30256	4.34063	4.3787	1.99821e-9	9.49373e-10	2.2589e-7	1.12027e-7
chr1	158091856	158091956	312449	0	+	0.53	(0.526,0.57]	chr1	34725	3	SS5_PROX	SS5_PROX:INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11:ENST00000368172.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.04709	4.3404799999999994	4.63387	2.57391e-4	2.21154e-5	0.00911512	0.00112425
chrX	9520306	9520406	10077964	0	+	0.57	(0.526,0.57]	chrX	1005235	181	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	4.04709	4.3404799999999994	4.63387	2.57391e-4	2.21154e-5	0.00911512	0.00112425
chrX	73845730	73845830	10373670	0	-	0.53	(0.526,0.57]	chrX	1029968	84	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	4.04709	4.3404799999999994	4.63387	2.57391e-4	2.21154e-5	0.00911512	0.00112425
chr1	159865614	159865712	314195	0	+	0.530612	(0.526,0.57]	chr1	35044	47	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272668	ENSG00000272668.2	ENST00000608430.2	lncRNA	lncRNA	lncRNA	lncRNA	4	34	2	3.57534	4.3402650000000005	5.10519	7.52975e-7	1.89233e-11	5.33699e-5	2.79646e-9
chr16	24759658	24759758	8357503	0	+	0.43	(0.424,0.459]	chr16	779122	9	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.90943	4.34014	5.77085	0.00449434	5.32819e-8	0.0875511	4.72329e-6
chr9	130878567	130878667	5516720	0	+	0.45	(0.424,0.459]	chr9	495094	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.90943	4.34014	5.77085	0.00449434	5.32819e-8	0.0875511	4.72329e-6
chr1	43423816	43423916	126507	0	+	0.57	(0.526,0.57]	chr1	15075	1	SS3_PROX	SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	3.48083	4.34008	5.19933	0.00110295	4.16513e-6	0.0304129	2.48371e-4
chr15	59145431	59145530	8193471	0	-	0.535354	(0.526,0.57]	chr15	759721	67	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559412.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.48083	4.34008	5.19933	0.00110295	4.16513e-6	0.0304129	2.48371e-4
chr8	140994706	140994805	5300378	0	-	0.494949	(0.49,0.526]	chr8	473230	102	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	4.0726	4.339965	4.60733	1.93553e-5	4.64685e-8	9.87839e-4	4.23007e-6
chr17	513748	513847	8829450	0	-	0.494949	(0.49,0.526]	chr17	842532	52	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	74	2	4.29103	4.339955	4.38888	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	111315586	111315686	4816858	0	-	0.4	(0.392,0.424]	chr7	431926	3517	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	3.62464	4.339835	5.05503	1.11057e-4	2.39312e-9	0.00448562	2.68297e-7
chr19	10499394	10499454	9434634	0	-	0.55	(0.526,0.57]	chr19	925245	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KEAP1	ENSG00000079999.14	ENST00000171111.10:ENST00000393623.6:ENST00000588024.1:ENST00000585845.1:ENST00000592055.2:ENST00000591419.2:ENST00000591039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	228	1511	2	4.15748	4.339594999999999	4.52171	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	31898203	31898302	1410717	0	-	0.343434	(0.32,0.36]	chr2	146736	45	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.53935	4.33946	5.13957	3.19299e-4	6.71414e-5	0.010926	0.00291649
chr1	999158	999249	491051	0	-	0.78022	(0.629,1]	chr1	51978	1	CDS	CDS:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.87133	4.338895	5.80646	8.70021e-5	1.77728e-9	0.00370273	2.02683e-7
chr7	158656346	158656433	4911455	0	-	0.471264	(0.459,0.49]	chr7	438854	2	CDS	CDS:UTR3:EXON_MRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	68	2	4.07175	4.337265	4.60278	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	133633204	133633304	2439017	0	-	0.42	(0.392,0.424]	chr3	234162	41	INTRON	INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	4.2818	4.334845	4.38789	4.13968e-8	6.75864e-10	3.74186e-6	8.16339e-8
chr11	118504175	118504274	6508497	0	+	0.414141	(0.392,0.424]	chr11	589012	19	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000528278.2:ENST00000689424.1:ENST00000686370.1:ENST00000685397.1:ENST00000649878.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5020	21425	2	4.30881	4.33471	4.36061	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	174654684	174654784	1619959	0	-	0.45	(0.424,0.459]	chr2	167358	202	INTRON	INTRON	WIPF1	ENSG00000115935.18	ENST00000272746.9:ENST00000359761.7:ENST00000409415.7	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	4.12018	4.3347	4.54922	6.24647e-10	1e-12	7.58161e-8	1.72912e-10
chr16	3862677	3862777	8498850	0	-	0.55	(0.526,0.57]	chr16	796804	113	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.40949	4.3346800000000005	5.25987	0.00141136	2.82947e-6	0.0368074	1.75466e-4
chr6	1996352	1996452	3988534	0	-	0.45	(0.424,0.459]	chr6	361425	350	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	4.20361	4.334385	4.46516	1.79381e-5	2.35249e-6	9.13813e-4	1.51159e-4
chr5	37339996	37340095	3443642	0	-	0.535354	(0.526,0.57]	chr5	316924	17	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.97495	4.334285	4.69362	1.98837e-4	3.21576e-5	0.00746609	0.00156852
chr17	49659464	49659564	8961392	0	-	0.44	(0.424,0.459]	chr17	862118	120	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	4.29889	4.334275	4.36966	1.12945e-5	3.96287e-6	6.02727e-4	2.39291e-4
chr6	109374124	109374221	4158216	0	-	0.453608	(0.424,0.459]	chr6	378578	14	INTRON	INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	35	2	4.11931	4.334265	4.54922	6.24647e-10	6.58578e-11	7.58161e-8	9.09931e-9
chr12	128606957	128607057	7050998	0	+	0.45	(0.424,0.459]	chr12	646496	625	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	3.87401	4.334185	4.79436	5.33056e-9	7.26175e-12	5.66111e-7	1.12673e-9
chr17	43248359	43248459	8937945	0	-	0.5	(0.49,0.526]	chr17	859071	182	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	151	2	3.99253	4.333975	4.67542	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	50617643	50617743	611122	0	-	0.4	(0.392,0.424]	chr1	68244	108	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	3.65055	4.33376	5.01697	2.34553e-7	7.03248e-9	1.88437e-5	7.35448e-7
chr16	89278473	89278572	8622595	0	-	0.606061	(0.57,0.629]	chr16	813612	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000562194.1:ENST00000623388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	3.42043	4.33357	5.24671	9.02612e-4	2.15311e-6	0.0258498	1.3963e-4
chr7	131053953	131054053	4848661	0	-	0.59	(0.57,0.629]	chr7	434489	10	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	17	2	3.42043	4.33357	5.24671	9.02612e-4	2.15311e-6	0.0258498	1.3963e-4
chrX	53421794	53421894	10345723	0	-	0.4	(0.392,0.424]	chrX	1027442	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	138	592	2	4.23472	4.3334	4.43208	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	28416531	28416631	6858952	0	+	0.45	(0.424,0.459]	chr12	626451	32	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	39	2	4.0173	4.333024999999999	4.64875	2.48943e-10	3.11406e-12	3.17004e-8	5.07746e-10
chr16	81669741	81669841	8452230	0	+	0.6	(0.57,0.629]	chr16	791083	2	SS3_PROX	SS3_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.91553	4.33193	4.74833	0.00651627	1.07277e-4	0.114061	0.00442346
chr3	39408821	39408903	1839746	0	+	0.621951	(0.57,0.629]	chr3	186472	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.91553	4.33193	4.74833	0.00651627	1.07277e-4	0.114061	0.00442346
chr4	470078	470178	2813098	0	-	0.6	(0.57,0.629]	chr4	266106	253	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.91553	4.33193	4.74833	0.00651627	1.07277e-4	0.114061	0.00442346
chr6	151001547	151001647	3931096	0	+	0.58	(0.57,0.629]	chr6	357940	160	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.91553	4.33193	4.74833	0.00651627	1.07277e-4	0.114061	0.00442346
chr8	142320417	142320516	5302765	0	-	0.626263	(0.57,0.629]	chr8	473385	14	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5:ENST00000519651.5:ENST00000662555.1:ENST00000518928.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.91553	4.33193	4.74833	0.00651627	1.07277e-4	0.114061	0.00442346
chr15	59479584	59479684	7995455	0	+	0.58	(0.57,0.629]	chr15	739217	190	INTRON	INTRON	FAM81A	ENSG00000157470.12	ENST00000558348.5:ENST00000560394.5:ENST00000288228.10:ENST00000560474.5:ENST00000560087.5:ENST00000560074.5:ENST00000561361.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.91529	4.33176	4.74823	2.43299e-7	2.15631e-9	1.91066e-5	2.42843e-7
chr20	63532225	63532325	9778774	0	-	0.44	(0.424,0.459]	chr20	969729	3	SS5_PROX	SS5_PROX:INTRON	PTK6	ENSG00000101213.7	ENST00000542869.3:ENST00000217185.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	3.47733	4.3317049999999995	5.18608	2.01844e-4	8.58015e-11	0.00755335	1.16412e-8
chr10	116937673	116937773	6266305	0	-	0.41	(0.392,0.424]	chr10	560709	73	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	52	2	4.0782	4.33137	4.58454	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	125214181	125214281	5086228	0	+	0.43	(0.424,0.459]	chr8	455136	315	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	4.20361	4.331045	4.45848	1.79381e-5	5.48586e-9	9.13813e-4	5.79354e-7
chr17	360996	361096	8829082	0	-	0.61	(0.57,0.629]	chr17	842518	80	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.98068	4.331	4.68132	0.0053729	1.50304e-4	0.100211	0.00577248
chr5	141931218	141931280	3343407	0	+	0.419355	(0.392,0.424]	chr5	307088	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	DELE1	ENSG00000081791.9	ENST00000194118.8:ENST00000432126.7:ENST00000508751.1:ENST00000502729.1:ENST00000506775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	3.97957	4.3309750000000005	4.68238	4.95123e-6	3.20208e-7	2.96695e-4	2.47387e-5
chr17	47484282	47484381	8953695	0	-	0.525253	(0.49,0.526]	chr17	861257	8	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000572695.5:ENST00000573318.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	17	2	4.15714	4.3297550000000005	4.50237	0.00319561	1.72026e-7	0.0699484	1.41598e-5
chr12	94453173	94453273	7238526	0	-	0.41	(0.392,0.424]	chr12	667399	175	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000546527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.07609	4.329615	5.58314	0.00280132	7.33041e-7	0.0645347	5.19799e-5
chr16	68349545	68349645	8415195	0	+	0.42	(0.392,0.424]	chr16	788275	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000692621.1:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000449359.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000567542.5:ENST00000566708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	3.07609	4.329615	5.58314	0.00280132	7.33041e-7	0.0645347	5.19799e-5
chr14	93330305	93330405	7905556	0	-	0.42	(0.392,0.424]	chr14	728433	338	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.73536	4.3291900000000005	4.92302	1.45314e-4	3.4035e-5	0.00569484	0.0016098
chr2	135841051	135841151	1571509	0	-	0.41	(0.392,0.424]	chr2	162863	1	SS3_PROX	SS3_PROX:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.73536	4.3291900000000005	4.92302	1.45314e-4	3.4035e-5	0.00569484	0.0016098
chr6	20996430	20996530	3730415	0	+	0.41	(0.392,0.424]	chr6	338635	405	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.73536	4.3291900000000005	4.92302	1.45314e-4	3.4035e-5	0.00569484	0.0016098
chr9	135908888	135908988	5526499	0	+	0.57	(0.526,0.57]	chr9	496970	1	SS5_PROX	SS5_PROX:INTRON	CAMSAP1-DT	ENSG00000238058.2	ENST00000423793.1:ENST00000651515.1	lncRNA	lncRNA	lncRNA	lncRNA	4	35	2	3.2798	4.328715	5.37763	1.38764e-5	1e-12	7.44411e-4	1.72912e-10
chr10	94545787	94545854	5945110	0	+	0.626866	(0.57,0.629]	chr10	533093	1	UTR5	UTR5:EXON_MRNA:INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000419900.5:ENST00000630929.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	3.34305	4.3279250000000005	5.3128	8.05796e-5	9.9438e-7	0.00345544	7.00342e-5
chr1	197686757	197686857	831694	0	-	0.45	(0.424,0.459]	chr1	92280	122	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000422998.1:ENST00000294738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	4.01972	4.327680000000001	4.63564	2.56149e-8	1.40003e-10	2.43432e-6	1.85644e-8
chr3	154282592	154282687	2475403	0	-	0.357895	(0.32,0.36]	chr3	237300	14	INTRON	INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000479934.5:ENST00000481941.5:ENST00000460695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	48	2	3.57486	4.325760000000001	5.07666	1.30296e-12	1e-12	2.2231e-10	1.73382e-10
chr1	16340479	16340579	524098	0	-	0.49	(0.459,0.49]	chr1	56738	247	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr1	24753417	24753517	77095	0	+	0.48	(0.459,0.49]	chr1	7922	74	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr1	36145294	36145393	570433	0	-	0.464646	(0.459,0.49]	chr1	64085	44	INTRON	INTRON	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000373163.5:ENST00000373162.5:ENST00000469757.1:ENST00000373159.1:ENST00000497251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr1	160699784	160699884	787743	0	-	0.49	(0.459,0.49]	chr1	88065	142	INTRON	INTRON	CD48	ENSG00000117091.10	ENST00000368046.8:ENST00000613788.1:ENST00000368045.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr1	204112214	204112314	407044	0	+	0.47	(0.459,0.49]	chr1	43834	337	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr12	64629734	64629833	6938170	0	+	0.484848	(0.459,0.49]	chr12	635121	182	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr13	51371508	51371608	7528234	0	-	0.48	(0.459,0.49]	chr13	692425	18	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000483441.5:ENST00000490542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr16	25244177	25244276	8537215	0	-	0.474747	(0.459,0.49]	chr16	802498	5	CDS	CDS:UTR3:EXON_MRNA	ZKSCAN2	ENSG00000155592.16	ENST00000328086.12:ENST00000569150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr17	42954575	42954675	8935928	0	-	0.49	(0.459,0.49]	chr17	858692	3	SS5_PROX	SS5_PROX:INTRON	AARSD1	ENSG00000266967.7	ENST00000427569.7:ENST00000591096.5:ENST00000486493.5:ENST00000592136.5:ENST00000474578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr2	200511464	200511564	1260305	0	+	0.49	(0.459,0.49]	chr2	131179	8	INTRON	INTRON	SGO2	ENSG00000163535.18	ENST00000418045.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr3	54138168	54138267	1884637	0	+	0.484848	(0.459,0.49]	chr3	192342	142	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr4	2878305	2878405	2549409	0	+	0.47	(0.459,0.49]	chr4	245104	18	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr4	54023601	54023701	2905059	0	-	0.46	(0.459,0.49]	chr4	273081	91	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr6	16673444	16673543	4011680	0	-	0.484848	(0.459,0.49]	chr6	363023	55	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr6	37877985	37878085	3771166	0	+	0.47	(0.459,0.49]	chr6	345064	576	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr9	33139416	33139516	5605111	0	-	0.48	(0.459,0.49]	chr9	501751	36	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.81712	4.324915	4.83271	0.0120499	1.09213e-4	0.184357	0.00442392
chr1	151101673	151101772	296743	0	+	0.474747	(0.459,0.49]	chr1	31657	33	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000368918.8:ENST00000489549.5:ENST00000368916.1:ENST00000467551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr17	80809803	80809903	8816993	0	+	0.48	(0.459,0.49]	chr17	840429	179	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr18	24354827	24354927	9195347	0	-	0.48	(0.459,0.49]	chr18	886195	66	INTRON	INTRON	OSBPL1A	ENSG00000141447.19	ENST00000319481.8:ENST00000578091.5:ENST00000579851.5:ENST00000582645.5:ENST00000579764.5:ENST00000582350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr2	101148727	101148827	1533174	0	-	0.46	(0.459,0.49]	chr2	159315	389	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr3	54674528	54674628	1890012	0	+	0.46	(0.459,0.49]	chr3	192406	319	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr5	57188491	57188591	3178504	0	+	0.47	(0.459,0.49]	chr5	293661	117	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr5	139349791	139349891	3333536	0	+	0.47	(0.459,0.49]	chr5	306070	60	INTRON	INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr5	140672145	140672245	3338307	0	+	0.47	(0.459,0.49]	chr5	306634	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	WDR55	ENSG00000120314.19	ENST00000506393.5:ENST00000358337.10:ENST00000511232.5:ENST00000504897.2:ENST00000520764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr5	154930157	154930257	3645086	0	-	0.46	(0.459,0.49]	chr5	331896	11	INTRON	INTRON	GEMIN5	ENSG00000082516.9	ENST00000285873.8:ENST00000523355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	3.88247	4.32374	4.76501	0.0104144	1.46149e-4	0.170122	0.00564049
chr3	125362013	125362113	2419280	0	-	0.46	(0.459,0.49]	chr3	231886	43	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	3.94248	4.322555	4.70263	7.90681e-9	9.94393e-12	8.19016e-7	1.53617e-9
chr17	43243859	43243959	8937900	0	-	0.51	(0.49,0.526]	chr17	859071	137	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	37	246	2	4.18423	4.3225	4.46077	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	23500231	23500331	946667	0	+	0.52	(0.49,0.526]	chr2	103567	242	INTRON	INTRON	KLHL29	ENSG00000119771.15	ENST00000486442.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	3.03263	4.32235	5.61207	5.79238e-7	6.35974e-8	4.24487e-5	5.62451e-6
chr6	128377077	128377177	4191775	0	-	0.39	(0.36,0.392]	chr6	381428	544	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	4.26063	4.322195	4.38376	0.00451705	1.64803e-5	0.0875511	8.48507e-4
chr3	155907840	155907938	2047403	0	+	0.520408	(0.49,0.526]	chr3	204555	12	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	54	2	4.19851	4.320684999999999	4.44286	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	78716110	78716205	2349633	0	-	0.4	(0.392,0.424]	chr3	227121	10	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	4.27208	4.320205	4.36833	1.43989e-10	1.26735e-11	1.90591e-8	1.93647e-9
chr19	51351954	51352051	9528650	0	-	0.56701	(0.526,0.57]	chr19	941903	12	INTRON	INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000593992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	3.97495	4.31984	4.66473	3.21576e-5	4.85278e-12	0.00156852	7.7613e-10
chr1	32303929	32304028	98683	0	+	0.40404	(0.392,0.424]	chr1	11102	8	INTRON	INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr1	151219476	151219576	297356	0	+	0.42	(0.392,0.424]	chr1	31739	31	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr11	122233848	122233916	6764557	0	-	0.397059	(0.392,0.424]	chr11	617597	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1	lncRNA	lncRNA	lncRNA	lncRNA	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr17	2493930	2494029	8844818	0	-	0.393939	(0.392,0.424]	chr17	844424	157	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5:ENST00000576976.2:ENST00000577148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr2	218578974	218579073	1313638	0	+	0.393939	(0.392,0.424]	chr2	135174	44	INTRON	INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000433439.1:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr20	5981481	5981579	9562415	0	+	0.408163	(0.392,0.424]	chr20	946934	31	INTRON	INTRON	MCM8	ENSG00000125885.13	ENST00000610722.4:ENST00000378883.5:ENST00000378896.7:ENST00000378886.6:ENST00000265187.4	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr5	131773044	131773143	3595565	0	-	0.40404	(0.392,0.424]	chr5	326445	280	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.78194	4.31924	4.85654	7.47402e-4	1.84333e-4	0.0225125	0.00688171
chr19	49652530	49652628	9375915	0	+	0.704082	(0.629,1]	chr19	913512	18	CDS	CDS:EXON_MRNA	SCAF1	ENSG00000126461.15	ENST00000360565.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.33315	4.3180250000000004	5.3029	2.27928e-5	7.37915e-7	0.00115649	5.32314e-5
chr10	73454211	73454311	6165080	0	-	0.24	[0,0.32]	chr10	552052	4	SS5_PROX	SS5_PROX:INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.67128	4.31795	4.96462	1.892e-5	5.55329e-8	9.68233e-4	5.01996e-6
chr5	70053552	70053652	3206916	0	+	0.38	(0.36,0.392]	chr5	295810	34	INTRON	INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	4.30331	4.317254999999999	4.3312	0.00387074	2.34074e-5	0.078873	0.00116109
chr1	162757049	162757147	322049	0	+	0.367347	(0.36,0.392]	chr1	36351	9	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000672207.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	3.59498	4.317095	5.03921	9.59768e-5	1.28326e-5	0.00399331	6.90028e-4
chr15	85022921	85023021	8068746	0	+	0.45	(0.424,0.459]	chr15	745864	402	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	3.98062	4.3170649999999995	4.65351	2.41657e-6	1.8873e-7	1.5318e-4	1.54537e-5
chr20	34431001	34431100	9632933	0	+	0.434343	(0.424,0.459]	chr20	950773	61	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	3.98062	4.3170649999999995	4.65351	2.41657e-6	1.8873e-7	1.5318e-4	1.54537e-5
chr15	56443709	56443781	8184278	0	-	0.375	(0.36,0.392]	chr15	759113	2	CDS	CDS:EXON_MRNA	MNS1	ENSG00000138587.6	ENST00000260453.4	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	4.30775	4.316345	4.32494	2.53752e-9	7.2109e-12	2.82933e-7	1.12059e-9
chr6	169723247	169723344	4280347	0	-	0.402062	(0.392,0.424]	chr6	387726	18	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	4.26419	4.31548	4.36677	8.10105e-6	2.06452e-7	4.57465e-4	1.64563e-5
chr14	21244254	21244353	7773148	0	-	0.424242	(0.392,0.424]	chr14	714969	74	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.7075	4.31526	4.92302	9.40427e-4	1.45314e-4	0.0266969	0.00569484
chr15	71908893	71908993	8229681	0	-	0.41	(0.392,0.424]	chr15	763740	35	INTRON	INTRON	MYO9A	ENSG00000066933.16	ENST00000356056.10:ENST00000564571.5:ENST00000444904.5:ENST00000563542.5:ENST00000566885.5:ENST00000566744.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.7075	4.31526	4.92302	9.40427e-4	1.45314e-4	0.0266969	0.00569484
chr5	158945679	158945779	3651023	0	-	0.42	(0.392,0.424]	chr5	332277	1052	INTRON	INTRON	EBF1	ENSG00000164330.17	ENST00000313708.11:ENST00000518836.5:ENST00000519739.5:ENST00000519890.5:ENST00000380654.8:ENST00000517373.1:ENST00000522192.5:ENST00000523464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	10	2	3.7075	4.31526	4.92302	9.40427e-4	1.45314e-4	0.0266969	0.00569484
chr8	25206023	25206123	4949734	0	+	0.41	(0.392,0.424]	chr8	443317	207	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.7075	4.31526	4.92302	9.40427e-4	1.45314e-4	0.0266969	0.00569484
chr14	66664115	66664215	7661194	0	+	0.35	(0.32,0.36]	chr14	705173	1126	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	38	2	4.01213	4.31522	4.61831	4.73668e-10	1e-12	5.83319e-8	1.73382e-10
chr15	87940687	87940753	8266732	0	-	0.515152	(0.49,0.526]	chr15	767671	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NTRK3	ENSG00000140538.17	ENST00000394480.6:ENST00000629765.3:ENST00000357724.6:ENST00000626019.2:ENST00000557856.5:ENST00000695462.1:ENST00000542733.6:ENST00000558676.5:ENST00000559680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	55	361	2	4.25717	4.31491	4.37265	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	128464695	128464795	7049574	0	+	0.43	(0.424,0.459]	chr12	646490	487	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.11093	4.3147400000000005	4.51855	5.36389e-5	8.67885e-7	0.00243585	6.19626e-5
chr3	99962212	99962312	1936405	0	+	0.53	(0.526,0.57]	chr3	195309	1438	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	3.67324	4.31421	4.95518	2.18967e-7	2.63103e-10	1.72699e-5	3.32606e-8
chr4	118618619	118618716	2720833	0	+	0.494845	(0.49,0.526]	chr4	258661	1	INTRON	INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	42	2	3.08557	4.31409	5.54261	2.02055e-6	1e-12	1.31884e-4	1.73382e-10
chr10	72806863	72806963	5890463	0	+	0.47	(0.459,0.49]	chr10	528978	458	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	4.21222	4.31376	4.4153	9.25181e-6	8.98032e-7	5.14007e-4	6.37943e-5
chr15	84651714	84651814	8264875	0	-	0.47	(0.459,0.49]	chr15	767484	27	INTRON	INTRON	WDR73	ENSG00000177082.13	ENST00000434634.7:ENST00000398528.7:ENST00000559994.5:ENST00000559015.5:ENST00000559126.5:ENST00000560966.5:ENST00000558521.5:ENST00000559224.5:ENST00000559452.5:ENST00000561329.5:ENST00000559178.5:ENST00000560835.5:ENST00000560088.5:ENST00000561447.5:ENST00000560252.5:ENST00000558019.5:ENST00000560182.5:ENST00000559877.5:ENST00000558487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	3.77082	4.312855	4.85489	4.0459e-9	3.39545e-9	4.36302e-7	3.71453e-7
chr7	138972689	138972789	4866024	0	-	0.48	(0.459,0.49]	chr7	435478	529	INTRON	INTRON	KIAA1549	ENSG00000122778.10	ENST00000422774.2:ENST00000440172.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.77363	4.31263	5.85163	0.00152008	5.06515e-9	0.0397018	5.39084e-7
chr3	50674926	50675010	1871557	0	+	0.797619	(0.629,1]	chr3	190418	1	UTR5	UTR5:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.60202	4.311685	5.02135	1.20607e-4	9.70346e-6	0.00489816	5.37523e-4
chr6	149843823	149843923	4233393	0	-	0.51	(0.49,0.526]	chr6	384630	3	INTRON	INTRON	LRP11	ENSG00000120256.11	ENST00000239367.7:ENST00000367368.3	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	4.14459	4.31146	4.47833	3.41555e-7	2.30178e-8	2.60631e-5	2.18887e-6
chr16	18343825	18343918	8522603	0	-	0.709677	(0.629,1]	chr16	800008	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6:ENST00000433020.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	14	2	3.9362	4.310915	4.68563	0.0052327	1.13329e-4	0.0992178	0.00463413
chr1	92836256	92836324	233393	0	+	0.514706	(0.49,0.526]	chr1	23312	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000315741.5:ENST00000461952.1:ENST00000645908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	3.95985	4.31061	4.66137	3.94049e-9	2.99005e-12	4.2522e-7	4.91016e-10
chr22	23882165	23882262	9905779	0	+	0.474227	(0.459,0.49]	chr22	983844	19	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	77	2	4.24787	4.310359999999999	4.37285	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	82392110	82392210	4761883	0	-	0.42	(0.392,0.424]	chr7	426511	421	INTRON	INTRON	CACNA2D1	ENSG00000153956.16	ENST00000356860.8:ENST00000356253.9:ENST00000423588.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	4.17862	4.310345	4.44207	4.01331e-5	5.58952e-6	0.00187621	3.2822e-4
chrX	107153071	107153171	10401261	0	-	0.42	(0.392,0.424]	chrX	1032197	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5:ENST00000432145.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	4.17862	4.310345	4.44207	4.01331e-5	5.58952e-6	0.00187621	3.2822e-4
chr1	43809013	43809113	129564	0	+	0.4	(0.392,0.424]	chr1	15648	71	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	4.25372	4.310245	4.36677	2.90267e-5	8.10105e-6	0.00141183	4.57465e-4
chr10	103089273	103089372	6242179	0	-	0.393939	(0.392,0.424]	chr10	558851	22	UTR3	UTR3:EXON_MRNA	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000675985.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	4.25372	4.310245	4.36677	2.90267e-5	8.10105e-6	0.00141183	4.57465e-4
chr15	20428295	20428395	8104779	0	-	0.27	[0,0.32]	chr15	749417	192	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	36	2	3.97412	4.309810000000001	4.6455	6.70027e-10	1e-12	8.10274e-8	1.72912e-10
chr10	27112620	27112720	6087400	0	-	0.44	(0.424,0.459]	chr10	545753	1	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.16328	4.309395	5.45551	0.0011776	1.50668e-6	0.0313499	9.96778e-5
chr15	50343279	50343378	8164561	0	-	0.444444	(0.424,0.459]	chr15	756951	161	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.16328	4.309395	5.45551	0.0011776	1.50668e-6	0.0313499	9.96778e-5
chr1	61099175	61099275	165093	0	+	0.42	(0.392,0.424]	chr1	19198	106	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	31	2	4.19479	4.30921	4.42363	1.49344e-8	6.14656e-11	1.47914e-6	8.53645e-9
chr11	35663305	35663400	6371643	0	+	0.673684	(0.629,1]	chr11	571028	2	CDS	CDS:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	144	1592	2	4.07365	4.308925	4.5442	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	102815491	102815591	10188720	0	+	0.46	(0.459,0.49]	chrX	1014548	447	INTRON	INTRON	LINC00630	ENSG00000223546.8	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	3.00155	4.308355000000001	5.61516	0.00201907	9.49302e-8	0.0510613	8.06088e-6
chr6	165829700	165829800	4269043	0	-	0.52	(0.49,0.526]	chr6	386909	6	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	73	2	3.55021	4.307695	5.06518	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	66499180	66499280	8780878	0	+	0.52	(0.49,0.526]	chr17	835628	25	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	3.57253	4.307155	5.04178	2.38382e-5	1.57703e-5	0.00119556	8.20905e-4
chr13	19970970	19971070	7328345	0	+	0.47	(0.459,0.49]	chr13	677551	5	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.56515	4.3065	5.04785	8.21277e-4	2.39418e-5	0.0238805	0.00119556
chr21	16336887	16336987	9788261	0	+	0.46	(0.459,0.49]	chr21	970602	58	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	3.56515	4.3065	5.04785	8.21277e-4	2.39418e-5	0.0238805	0.00119556
chr6	42068905	42068972	3777067	0	+	0.537313	(0.526,0.57]	chr6	345701	1	SS5_PROX	SS5_PROX:INTRON	TAF8	ENSG00000137413.17	ENST00000686935.1:ENST00000372982.8:ENST00000456846.6:ENST00000494547.5:ENST00000372977.8:ENST00000688562.1:ENST00000686229.1:ENST00000687601.1:ENST00000688007.1:ENST00000687266.1:ENST00000465926.5:ENST00000685500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	4.11947	4.3064	4.49333	1.8403e-7	4.7259e-8	1.51229e-5	4.23605e-6
chr2	96842437	96842511	1514935	0	-	0.513514	(0.49,0.526]	chr2	157657	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD39:ANKRD23	ENSG00000213337.9:ENSG00000163126.15	ENST00000443120.5:ENST00000318357.9:ENST00000418232.5:ENST00000331001.2:ENST00000462692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	4.30074	4.30639	4.31204	1.82214e-9	1e-12	2.07481e-7	1.72912e-10
chr12	62512138	62512238	6931154	0	+	0.47	(0.459,0.49]	chr12	634381	31	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.77994	4.306324999999999	4.83271	2.14818e-4	1.09213e-4	0.00789628	0.00442392
chr5	59464489	59464589	3476892	0	-	0.48	(0.459,0.49]	chr5	319250	340	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	3.77994	4.306324999999999	4.83271	2.14818e-4	1.09213e-4	0.00789628	0.00442392
chr17	17761441	17761541	8664872	0	+	0.64	(0.629,1]	chr17	819356	369	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.46913	4.306155	5.14318	3.04018e-4	3.40591e-6	0.0105767	2.08838e-4
chr15	38264682	38264782	7944802	0	+	0.48	(0.459,0.49]	chr15	733659	111	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.68952	4.30509	5.92066	0.00206127	2.70029e-9	0.0505307	2.98805e-7
chr12	20422020	20422120	6842584	0	+	0.52	(0.49,0.526]	chr12	625044	514	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	4.22088	4.305020000000001	4.38916	5.07325e-6	6.34142e-7	3.03611e-4	4.61699e-5
chrX	80773782	80773882	10387198	0	-	0.36	(0.32,0.36]	chrX	1030931	277	INTRON	INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5:ENST00000478415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	28	2	3.94493	4.3048399999999996	4.66475	8.63412e-7	3.36298e-12	6.08224e-5	5.45349e-10
chr8	94411120	94411209	5219848	0	-	0.325843	(0.32,0.36]	chr8	467081	1	UTR3	UTR3:EXON_MRNA	FSBP	ENSG00000265817.4	ENST00000517506.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	21	2	3.87168	4.30452	4.73736	5.18532e-7	1.02944e-7	3.83329e-5	8.74275e-6
chr11	73426726	73426824	6644283	0	-	0.428571	(0.424,0.459]	chr11	609041	13	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.89477	4.304505	4.71424	3.07139e-4	2.5121e-4	0.0105767	0.00902798
chr5	10231527	10231627	3421346	0	-	0.68	(0.629,1]	chr5	314738	35	INTRON	INTRON	ATPSCKMT	ENSG00000150756.14	ENST00000511437.6:ENST00000280330.12:ENST00000510047.5:ENST00000504390.5:ENST00000510052.5:ENST00000506108.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	3.1166	4.3037849999999995	5.49097	1.41787e-4	9.87659e-8	0.00568047	8.31085e-6
chr17	51036272	51036370	8964894	0	-	0.326531	(0.32,0.36]	chr17	862922	42	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000576492.1:ENST00000510855.1:ENST00000511987.5:ENST00000502329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	4.27744	4.30348	4.32952	0.00388505	6.03386e-5	0.0816719	0.00268144
chr9	37342480	37342579	5381168	0	+	0.454545	(0.424,0.459]	chr9	480728	143	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6:ENST00000497924.5:ENST00000481507.5:ENST00000496099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	4.25372	4.30337	4.35302	5.36136e-8	2.54851e-8	4.85529e-6	2.42771e-6
chr4	168810116	168810216	2788140	0	+	0.42	(0.392,0.424]	chr4	264125	975	INTRON	INTRON	PALLD	ENSG00000129116.19	ENST00000505667.6:ENST00000261509.10:ENST00000512127.5:ENST00000649826.1:ENST00000510998.5	protein_coding	protein_coding	protein_coding	protein_coding	20	90	2	4.26774	4.3031500000000005	4.33856	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	233063774	233063873	886278	0	-	0.383838	(0.36,0.392]	chr1	98708	54	INTRON	INTRON	PCNX2	ENSG00000135749.19	ENST00000258229.14:ENST00000462233.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	4.11397	4.302885	4.4918	4.36875e-6	2.41963e-6	2.58808e-4	1.5318e-4
chr11	62875401	62875499	6408748	0	+	0.55102	(0.526,0.57]	chr11	575428	34	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	4.15213	4.30235	4.45257	1.57105e-10	1.12385e-10	2.05759e-8	1.48701e-8
chr7	76552221	76552321	4437488	0	+	0.49	(0.459,0.49]	chr7	399292	3	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	12	72	2	3.20736	4.302335	5.39731	2.25751e-10	1e-12	2.91159e-8	1.73382e-10
chrX	74207904	74208002	10376434	0	-	0.336735	(0.32,0.36]	chrX	1030040	36	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2	lncRNA	lncRNA	lncRNA	lncRNA	1	9	2	3.31131	4.302245	5.29318	0.0111187	1.5251e-5	0.179068	8.01855e-4
chr7	149242831	149242930	4577673	0	+	0.313131	[0,0.32]	chr7	411731	24	INTRON	INTRON	ZNF212	ENSG00000170260.9	ENST00000335870.7:ENST00000486371.1:ENST00000462724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	3.26461	4.30142	5.33823	4.77035e-4	2.44269e-10	0.0156573	3.11038e-8
chr2	164722621	164722720	1598316	0	-	0.313131	[0,0.32]	chr2	165498	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000493868.5:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5:ENST00000452626.5:ENST00000456693.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	20	2	3.71002	4.301285	4.89255	6.65505e-7	2.15736e-7	4.83589e-5	1.70234e-5
chr7	831034	831134	4282797	0	+	0.39	(0.36,0.392]	chr7	388090	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000457378.6:ENST00000450538.5:ENST00000427969.5:ENST00000435699.5:ENST00000440380.5:ENST00000439679.5:ENST00000424128.5:ENST00000457598.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.97461	4.30123	5.62785	0.00698532	5.69775e-7	0.123839	4.16055e-5
chr11	12926631	12926729	6327438	0	+	0.489796	(0.459,0.49]	chr11	567919	12	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	3.25649	4.300905	5.34532	3.12004e-8	1.09401e-12	2.92502e-6	1.88661e-10
chr15	65688514	65688614	8218980	0	-	0.36	(0.32,0.36]	chr15	762604	68	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000567323.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	4.2045	4.300745	4.39699	8.67854e-8	2.9798e-8	7.51259e-6	2.81358e-6
chr8	61645318	61645411	5179642	0	-	0.322581	(0.32,0.36]	chr8	464256	3	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000524173.5:ENST00000522349.5:ENST00000523927.5:ENST00000522919.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000519678.5:ENST00000518306.5:ENST00000520198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	3.87259	4.299545	4.7265	6.12159e-4	3.96495e-5	0.0189985	0.00188516
chr15	25413937	25414035	8108342	0	-	0.418367	(0.392,0.424]	chr15	749994	16	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000626589.2:ENST00000627018.1:ENST00000676452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	4.06521	4.299200000000001	4.53319	1.61757e-6	3.68288e-8	1.08646e-4	3.38313e-6
chr3	100739434	100739485	1941305	0	+	0.45098	(0.424,0.459]	chr3	195701	1	UTR3	UTR3:EXON_MRNA:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	3.22652	4.299035	5.37155	1.43888e-4	2.42251e-6	0.00569484	1.53938e-4
chr11	114446510	114446587	6504005	0	+	0.454545	(0.424,0.459]	chr11	588110	3	SS5_PROX	SS5_PROX:INTRON	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539754.5:ENST00000539275.5:ENST00000541703.5:ENST00000543131.5:ENST00000538198.5:ENST00000539119.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000540492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.5463	4.298845	5.05139	0.00153741	4.27641e-5	0.0389999	0.00199812
chrX	15803587	15803687	10087625	0	+	0.34	(0.32,0.36]	chrX	1006299	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000468028.1:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.08717	4.29874	5.51031	0.00535148	2.41138e-6	0.100211	1.53938e-4
chr1	39718375	39718475	116493	0	+	0.45	(0.424,0.459]	chr1	13467	254	INTRON	INTRON	PPIE	ENSG00000084072.17	ENST00000470018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr13	32051187	32051287	7347082	0	+	0.43	(0.424,0.459]	chr13	678987	127	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr3	52542888	52542987	1883095	0	+	0.454545	(0.424,0.459]	chr3	191964	11	INTRON	INTRON	SMIM4	ENSG00000168273.8	ENST00000476842.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr4	53098739	53098839	2899791	0	-	0.44	(0.424,0.459]	chr4	272927	1775	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr6	131035415	131035515	4198820	0	-	0.43	(0.424,0.459]	chr6	381829	197	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr7	101828471	101828571	4493508	0	+	0.43	(0.424,0.459]	chr7	404874	91	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.80014	4.298585	4.79703	3.54639e-4	2.28148e-4	0.0120332	0.00827964
chr1	631169	631265	17	0	+	0.510417	(0.49,0.526]	chr1	3	2	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	14	100	2	4.05665	4.298405000000001	4.54016	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	76619032	76619131	4438157	0	+	0.50505	(0.49,0.526]	chr7	399298	30	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	15	2	4.13201	4.2974049999999995	4.4628	7.611e-4	8.48086e-6	0.0225125	4.76746e-4
chr5	139297188	139297287	3333088	0	+	0.424242	(0.392,0.424]	chr5	305993	18	INTRON	INTRON	MATR3	ENSG00000015479.20	ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	4.15239	4.29723	4.44207	0.00572894	5.58952e-6	0.105396	3.2822e-4
chr9	65298043	65298142	5621220	0	-	0.40404	(0.392,0.424]	chr9	504077	78	INTRON	INTRON	CBWD4P	ENSG00000204778.4	ENST00000445695.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	11	2	4.15239	4.29723	4.44207	0.00572894	5.58952e-6	0.105396	3.2822e-4
chr1	93200497	93200596	234299	0	+	0.323232	(0.32,0.36]	chr1	23457	64	INTRON	INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000481180.6:ENST00000692873.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	4.16471	4.29717	4.42963	0.00312289	9.22891e-5	0.0697855	0.00388567
chr11	62609628	62609696	6616122	0	-	0.617647	(0.57,0.629]	chr11	603753	1	CDS	CDS:UTR5:EXON_MRNA	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	64	2	3.77965	4.296725	4.8138	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	23036630	23036730	74543	0	+	0.37	(0.36,0.392]	chr1	7387	56	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr1	42332224	42332324	588337	0	-	0.39	(0.36,0.392]	chr1	66021	80	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr1	51623215	51623315	143178	0	+	0.39	(0.36,0.392]	chr1	17589	56	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr1	178824883	178824983	363581	0	+	0.39	(0.36,0.392]	chr1	39283	28	INTRON	INTRON	RALGPS2	ENSG00000116191.19	ENST00000495034.5:ENST00000367634.7:ENST00000367635.8:ENST00000324778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr1	223963566	223963665	865960	0	-	0.363636	(0.36,0.392]	chr1	96301	9	INTRON	INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr10	27123352	27123446	6087516	0	-	0.37234	(0.36,0.392]	chr10	545796	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr10	73588888	73588987	6166466	0	-	0.373737	(0.36,0.392]	chr10	552250	122	INTRON	INTRON	USP54	ENSG00000166348.20	ENST00000339859.8:ENST00000687698.1:ENST00000689425.1:ENST00000685297.1:ENST00000422491.7:ENST00000691043.1:ENST00000681793.1:ENST00000687418.1:ENST00000680396.1:ENST00000451492.5:ENST00000413442.5:ENST00000433394.1:ENST00000498213.1:ENST00000474929.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr11	3725519	3725619	6541426	0	-	0.39	(0.36,0.392]	chr11	594404	3	SS3_PROX	SS3_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr13	50114414	50114514	7527943	0	-	0.37	(0.36,0.392]	chr13	692401	325	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000425586.5:ENST00000662092.1:ENST00000666359.2	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr14	21243354	21243454	7773139	0	-	0.37	(0.36,0.392]	chr14	714969	65	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr14	50307302	50307402	7820596	0	-	0.37	(0.36,0.392]	chr14	720098	39	INTRON	INTRON	L2HGDH	ENSG00000087299.12	ENST00000261699.8:ENST00000267436.9:ENST00000421284.7:ENST00000555423.5:ENST00000555610.1:ENST00000554191.5:ENST00000556393.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr14	66512398	66512498	7659675	0	+	0.37	(0.36,0.392]	chr14	705166	26	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr15	31647578	31647678	8118537	0	-	0.39	(0.36,0.392]	chr15	751181	770	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000678495.1:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr15	62029312	62029410	8206838	0	-	0.377551	(0.36,0.392]	chr15	760807	5	INTRON	INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr16	18832439	18832539	8525042	0	-	0.37	(0.36,0.392]	chr16	800570	1	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr18	21547087	21547186	9187891	0	-	0.373737	(0.36,0.392]	chr18	885496	60	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1:ENST00000622333.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr2	36548895	36548993	991312	0	+	0.377551	(0.36,0.392]	chr2	107909	3	UTR3	UTR3:EXON_MRNA	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr2	101140735	101140834	1533094	0	-	0.363636	(0.36,0.392]	chr2	159315	309	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr20	3515272	3515372	9556592	0	+	0.37	(0.36,0.392]	chr20	946198	434	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr20	41074072	41074172	9652473	0	+	0.37	(0.36,0.392]	chr20	953262	122	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr22	27937026	27937125	9918348	0	+	0.363636	(0.36,0.392]	chr22	985136	14	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr22	29885758	29885858	9924646	0	+	0.38	(0.36,0.392]	chr22	985720	20	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr3	10037323	10037420	1760443	0	+	0.391753	(0.36,0.392]	chr3	180961	6	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000682647.1:ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000431693.1:ENST00000438741.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr3	17580708	17580807	2194964	0	-	0.363636	(0.36,0.392]	chr3	214282	38	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr3	60217430	60217530	2303455	0	-	0.37	(0.36,0.392]	chr3	225034	1367	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr4	17926118	17926218	2848592	0	-	0.39	(0.36,0.392]	chr4	269613	164	INTRON	INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1:ENST00000674942.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr5	36233162	36233262	3440916	0	-	0.38	(0.36,0.392]	chr5	316401	52	INTRON	INTRON	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000282512.7:ENST00000506945.5:ENST00000514504.5:ENST00000511088.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr5	179756725	179756825	3407351	0	+	0.39	(0.36,0.392]	chr5	313081	229	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr6	5622918	5623018	3698040	0	+	0.37	(0.36,0.392]	chr6	336670	92	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr6	12053027	12053127	3709881	0	+	0.38	(0.36,0.392]	chr6	337579	139	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr6	130989258	130989357	4198354	0	-	0.383838	(0.36,0.392]	chr6	381809	106	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000529709.1:ENST00000532499.1:ENST00000526983.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr7	114988476	114988576	4517148	0	+	0.39	(0.36,0.392]	chr7	406865	83	INTRON	INTRON	MDFIC	ENSG00000135272.13	ENST00000393486.6:ENST00000431629.5:ENST00000498196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr7	130095727	130095826	4545863	0	+	0.363636	(0.36,0.392]	chr7	408919	4	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr7	131165509	131165609	4547418	0	+	0.39	(0.36,0.392]	chr7	409202	222	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chrX	85255710	85255801	10172213	0	+	0.362637	(0.36,0.392]	chrX	1013558	6	CDS	CDS:EXON_MRNA	ZNF711	ENSG00000147180.17	ENST00000674551.1:ENST00000373165.7:ENST00000276123.7:ENST00000360700.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.26063	4.295915	4.3312	0.00451705	0.00387074	0.0875511	0.078873
chr1	66942594	66942692	195039	0	+	0.357143	(0.32,0.36]	chr1	20917	20	INTRON	INTRON	MIER1	ENSG00000198160.15	ENST00000355977.10:ENST00000371018.7:ENST00000357692.6:ENST00000371016.5:ENST00000371014.5:ENST00000371012.6:ENST00000401041.6:ENST00000355356.3:ENST00000401042.7:ENST00000479067.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	4.02125	4.295885	4.57052	3.53532e-4	2.95142e-6	0.0122629	1.84947e-4
chr1	220200321	220200421	862801	0	-	0.34	(0.32,0.36]	chr1	95880	31	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	3.43922	4.2927100000000005	5.1462	1.15221e-4	2.68825e-9	0.00464739	2.98355e-7
chr11	102203501	102203601	6479643	0	+	0.35	(0.32,0.36]	chr11	585365	170	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000529029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.75647	4.2921499999999995	4.82783	4.57616e-4	6.44559e-5	0.0150584	0.00284455
chr21	37379511	37379611	9813039	0	+	0.36	(0.32,0.36]	chr21	972903	40	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.75647	4.2921499999999995	4.82783	4.57616e-4	6.44559e-5	0.0150584	0.00284455
chr11	119232895	119232995	6511364	0	+	0.41	(0.392,0.424]	chr11	589748	2	SS5_PROX	SS5_PROX:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.21741	4.29209	4.36677	0.00496616	8.10105e-6	0.0964485	4.57465e-4
chr1	220199822	220199922	862796	0	-	0.42	(0.392,0.424]	chr1	95880	26	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	4.03703	4.29202	4.54701	0.00102713	1.48653e-4	0.0276375	0.00578975
chr5	119533667	119533765	3293958	0	+	0.418367	(0.392,0.424]	chr5	302833	24	EXON_MRNA	EXON_MRNA:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	4.03703	4.29202	4.54701	0.00102713	1.48653e-4	0.0276375	0.00578975
chr7	73569417	73569516	4730812	0	-	0.414141	(0.392,0.424]	chr7	424264	20	UTR3	UTR3:EXON_MRNA	TBL2	ENSG00000106638.18	ENST00000305632.11	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.03703	4.29202	4.54701	0.00102713	1.48653e-4	0.0276375	0.00578975
chrX	11296276	11296376	10273913	0	-	0.39	(0.36,0.392]	chrX	1022350	54	INTRON	INTRON	ARHGAP6	ENSG00000047648.23	ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000489330.6:ENST00000380718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	69	2	4.16411	4.2919	4.41969	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	109143910	109144010	1117076	0	+	0.4	(0.392,0.424]	chr2	119805	134	INTRON	INTRON	SH3RF3	ENSG00000172985.11	ENST00000309415.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.47186	4.291555	5.11125	0.00366403	3.31137e-5	0.0766409	0.00159224
chr3	51315053	51315128	1877989	0	+	0.413333	(0.392,0.424]	chr3	190597	2	CDS	CDS:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.47186	4.291555	5.11125	0.00366403	3.31137e-5	0.0766409	0.00159224
chr6	36980423	36980520	4050655	0	-	0.42268	(0.392,0.424]	chr6	369317	16	EXON_MRNA	EXON_MRNA:INTRON	MTCH1	ENSG00000137409.21	ENST00000695055.1:ENST00000695048.1:ENST00000695049.1:ENST00000695050.1:ENST00000695051.1:ENST00000695052.1:ENST00000695053.1:ENST00000695054.1:ENST00000695046.1:ENST00000695047.1:ENST00000695045.1:ENST00000695044.1:ENST00000373616.9:ENST00000373627.10:ENST00000695059.1:ENST00000695060.1:ENST00000695058.1:ENST00000695066.1:ENST00000695067.1:ENST00000695068.1:ENST00000695069.1:ENST00000695063.1:ENST00000695064.1:ENST00000695065.1:ENST00000695062.1:ENST00000695072.1:ENST00000695070.1:ENST00000695071.1:ENST00000695073.1:ENST00000695074.1:ENST00000695075.1:ENST00000695076.1:ENST00000460219.3:ENST00000695077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.47186	4.291555	5.11125	0.00366403	3.31137e-5	0.0766409	0.00159224
chr8	119912119	119912219	5074175	0	+	0.42	(0.392,0.424]	chr8	454030	378	INTRON	INTRON	DEPTOR	ENSG00000155792.10	ENST00000523492.5:ENST00000286234.6	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.47186	4.291555	5.11125	0.00366403	3.31137e-5	0.0766409	0.00159224
chr9	699484	699584	5317665	0	+	0.4	(0.392,0.424]	chr9	475884	53	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.47186	4.291555	5.11125	0.00366403	3.31137e-5	0.0766409	0.00159224
chr5	179729742	179729842	3407092	0	+	0.34	(0.32,0.36]	chr5	313075	12	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	4.06155	4.29119	4.52083	7.26161e-6	1.60554e-8	4.19717e-4	1.5647e-6
chr5	1477886	1477986	3413842	0	-	0.58	(0.57,0.629]	chr5	314192	4	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	3.91529	4.2911850000000005	4.66708	2.43299e-7	7.1397e-9	1.91066e-5	7.41358e-7
chrM	933	1028	10480391	0	+	0.4	(0.392,0.424]	chrM	1038986	4	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	675	2797	2	4.29001	4.29115	4.29229	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	15803741	15803796	10087627	0	+	0.418182	(0.392,0.424]	chrX	1006300	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000468028.1:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	33	143	2	4.15655	4.28978	4.42301	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	164716845	164716945	324338	0	+	0.38	(0.36,0.392]	chr1	36599	320	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000559578.1:ENST00000560469.5:ENST00000496120.6:ENST00000468104.5:ENST00000560641.5:ENST00000482110.5:ENST00000558796.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	4.18028	4.28963	4.39898	7.51712e-7	8.56612e-8	5.41481e-5	7.38607e-6
chr11	9291505	9291604	6556938	0	-	0.464646	(0.459,0.49]	chr11	596231	26	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	4.1093	4.2888649999999995	4.46843	9.29923e-10	3.8999e-10	1.09893e-7	4.85399e-8
chr3	122388605	122388703	1965814	0	+	0.408163	(0.392,0.424]	chr3	198137	7	INTRON	INTRON	FAM162A	ENSG00000114023.16	ENST00000692876.1:ENST00000693245.1:ENST00000232125.9:ENST00000477892.5:ENST00000686831.1:ENST00000688631.1:ENST00000685650.1:ENST00000688794.1:ENST00000687114.1:ENST00000469967.1:ENST00000684791.1:ENST00000689215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	4.18975	4.288819999999999	4.38789	4.13968e-8	3.14687e-9	3.74186e-6	3.46163e-7
chr18	24040764	24040864	9083856	0	+	0.41	(0.392,0.424]	chr18	877876	206	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000578150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.39796	4.28803	5.1781	0.00439831	2.48959e-5	0.0875511	0.00122627
chrX	77635614	77635714	10383627	0	-	0.41	(0.392,0.424]	chrX	1030466	3	SS5_PROX	SS5_PROX:INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000623242.3:ENST00000460639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.39796	4.28803	5.1781	0.00439831	2.48959e-5	0.0875511	0.00122627
chr12	29701476	29701576	7131084	0	-	0.51	(0.49,0.526]	chr12	654840	402	INTRON	INTRON	TMTC1	ENSG00000133687.16	ENST00000256062.9:ENST00000539277.6:ENST00000551659.5:ENST00000552618.5:ENST00000553189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	3.72059	4.287985	4.85538	2.73826e-4	6.26806e-5	0.00975361	0.00277665
chr14	63975963	63976062	7650690	0	+	0.50505	(0.49,0.526]	chr14	703945	78	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.72059	4.287985	4.85538	2.73826e-4	6.26806e-5	0.00975361	0.00277665
chr7	75041288	75041387	4732836	0	-	0.494949	(0.49,0.526]	chr7	424733	129	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.72059	4.287985	4.85538	2.73826e-4	6.26806e-5	0.00975361	0.00277665
chr16	50324293	50324388	8557622	0	-	0.526316	(0.526,0.57]	chr16	805375	2	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	4.12302	4.287850000000001	4.45268	8.93019e-6	4.08411e-7	4.98528e-4	3.06417e-5
chr2	237090790	237090889	1352761	0	+	0.414141	(0.392,0.424]	chr2	139378	4	INTRON	INTRON	COPS8	ENSG00000198612.11	ENST00000392008.6:ENST00000409334.5:ENST00000470452.5:ENST00000354371.7:ENST00000419015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.96221	4.2875700000000005	4.61293	8.49057e-4	1.96069e-4	0.0240064	0.00725539
chr7	82326637	82326737	4761225	0	-	0.4	(0.392,0.424]	chr7	426495	1557	INTRON	INTRON	CACNA2D1	ENSG00000153956.16	ENST00000356860.8:ENST00000356253.9:ENST00000423588.1:ENST00000484706.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.96221	4.2875700000000005	4.61293	8.49057e-4	1.96069e-4	0.0240064	0.00725539
chr6	75144075	75144169	4103398	0	-	0.468085	(0.459,0.49]	chr6	373998	3	INTRON	INTRON	COL12A1	ENSG00000111799.22	ENST00000322507.13:ENST00000345356.10:ENST00000416123.6:ENST00000483888.6:ENST00000419671.1:ENST00000474564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	53	2	3.80283	4.287555	4.77228	2.44382e-12	1e-12	4.04109e-10	1.73382e-10
chr8	144661887	144661987	5311047	0	-	0.58	(0.57,0.629]	chr8	475266	558	INTRON	INTRON	ARHGAP39	ENSG00000147799.12	ENST00000377307.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	4.28422	4.285775	4.28733	0.00145677	8.34421e-7	0.0382827	5.98026e-5
chr2	36461133	36461233	990418	0	+	0.53	(0.526,0.57]	chr2	107826	180	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	3.393	4.28562	5.17824	4.3065e-6	8.2282e-12	2.56035e-4	1.28096e-9
chr1	151559393	151559493	298184	0	+	0.41	(0.392,0.424]	chr1	31952	186	INTRON	INTRON	TUFT1	ENSG00000143367.17	ENST00000392712.7:ENST00000368848.6:ENST00000368849.8:ENST00000498606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.96221	4.28543	4.60865	1.96069e-4	1.06475e-6	0.00725539	7.43219e-5
chr11	45966302	45966399	6597424	0	-	0.412371	(0.392,0.424]	chr11	600222	3	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000688570.1:ENST00000685188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	3.96221	4.28543	4.60865	1.96069e-4	1.06475e-6	0.00725539	7.43219e-5
chr5	59701165	59701265	3479263	0	-	0.42	(0.392,0.424]	chr5	319265	1148	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.96221	4.28543	4.60865	1.96069e-4	1.06475e-6	0.00725539	7.43219e-5
chr3	37952542	37952641	1834612	0	+	0.414141	(0.392,0.424]	chr3	185418	50	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000486978.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	4.03703	4.2851099999999995	4.53319	1.48653e-4	1.61757e-6	0.00578975	1.08646e-4
chr3	158786064	158786164	2059144	0	+	0.31	[0,0.32]	chr3	205174	21	INTRON	INTRON	MFSD1	ENSG00000118855.21	ENST00000486568.5:ENST00000491804.1:ENST00000465739.5	protein_coding	protein_coding	protein_coding	protein_coding	11	42	2	4.21994	4.284155	4.34837	4.91496e-12	1e-12	7.8549e-10	1.72912e-10
chrX	73837439	73837538	10373587	0	-	0.424242	(0.392,0.424]	chrX	1029968	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	13	60	2	4.24632	4.284105	4.32189	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	61973498	61973597	5868309	0	+	0.383838	(0.36,0.392]	chr10	526533	327	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chr12	57420946	57421045	7182129	0	-	0.363636	(0.36,0.392]	chr12	663024	248	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chr12	105052089	105052153	7267664	0	-	0.375	(0.36,0.392]	chr12	669415	1	CDS	CDS:UTR3:EXON_MRNA	ALDH1L2	ENSG00000136010.14	ENST00000549335.5:ENST00000258494.14:ENST00000652515.1:ENST00000552270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chr4	109101659	109101759	2991138	0	-	0.37	(0.36,0.392]	chr4	280109	511	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chr5	115620134	115620234	3575680	0	-	0.37	(0.36,0.392]	chr5	324767	3	SS5_PROX	SS5_PROX:INTRON	TMED7	ENSG00000134970.14	ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chrX	45108132	45108228	10120025	0	+	0.364583	(0.36,0.392]	chrX	1008955	2	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000431196.3:ENST00000479423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.91092	4.283825	4.65673	7.48315e-4	5.00165e-4	0.0220209	0.0160179
chr16	8833939	8834038	8313429	0	+	0.424242	(0.392,0.424]	chr16	774670	48	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	3.3308	4.283635	5.23647	6.63878e-4	2.4131e-10	0.0199616	3.08506e-8
chr15	69240697	69240797	8022689	0	+	0.38	(0.36,0.392]	chr15	741605	299	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.59992	4.28355	4.96718	0.00266188	1.24104e-4	0.0631592	0.0049353
chr19	52625722	52625821	9532909	0	-	0.373737	(0.36,0.392]	chr19	942506	63	INTRON	INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000301096.8:ENST00000536937.6:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000597161.6:ENST00000687234.1:ENST00000595939.5:ENST00000596930.5:ENST00000598536.5:ENST00000601140.1:ENST00000595171.5:ENST00000601237.5:ENST00000596440.5:ENST00000602232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.59992	4.28355	4.96718	0.00266188	1.24104e-4	0.0631592	0.0049353
chr8	99327431	99327531	5042465	0	+	0.39	(0.36,0.392]	chr8	452276	518	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.59992	4.28355	4.96718	0.00266188	1.24104e-4	0.0631592	0.0049353
chrX	108641648	108641748	10200000	0	+	0.54	(0.526,0.57]	chrX	1015884	145	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.1573	4.282705	5.40811	4.45312e-4	6.86579e-7	0.0146627	4.92496e-5
chr7	76343427	76343527	4737773	0	-	0.46	(0.459,0.49]	chr7	425376	128	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.08436	4.28248	5.4806	0.00939464	4.11395e-7	0.161654	3.09732e-5
chr12	27591384	27591484	6854285	0	+	0.41	(0.392,0.424]	chr12	626077	71	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5:ENST00000535575.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	3	19	2	4.25372	4.281750000000001	4.30978	2.90267e-5	7.17587e-8	0.00141183	6.27925e-6
chr19	53089814	53089914	9536780	0	-	0.52	(0.49,0.526]	chr19	943002	31	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	3.70699	4.281185	4.85538	6.26806e-5	6.7032e-6	0.00277665	3.89775e-4
chr1	248812774	248812870	921432	0	-	0.625	(0.57,0.629]	chr1	101436	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SH3BP5L	ENSG00000175137.11	ENST00000366472.6:ENST00000484202.2:ENST00000475978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	3.72964	4.28099	4.83234	1.49677e-6	9.24905e-10	1.01308e-4	1.09461e-7
chr10	28560332	28560432	5824728	0	+	0.52	(0.49,0.526]	chr10	523623	219	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	3.07223	4.280725	5.48922	9.76018e-4	2.5213e-7	0.0274227	2.01203e-5
chr7	107304344	107304444	4805771	0	-	0.31	[0,0.32]	chr7	431528	56	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	4.02472	4.28055	4.53638	8.66912e-6	8.41855e-6	4.85864e-4	4.71048e-4
chr18	24039666	24039765	9083845	0	+	0.434343	(0.424,0.459]	chr18	877876	195	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000578150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.93877	4.280275	5.62178	8.23195e-4	2.83203e-7	0.0239037	2.17914e-5
chr12	19446922	19447021	6839292	0	+	0.313131	[0,0.32]	chr12	624976	58	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	4.24175	4.280255	4.31876	6.90565e-5	5.15904e-5	0.00300464	0.00235512
chr7	101917819	101917918	4494405	0	+	0.474747	(0.459,0.49]	chr7	404884	12	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	3.32488	4.279955	5.23503	1.69572e-5	5.25256e-6	8.71289e-4	3.11102e-4
chr17	37004671	37004771	8706118	0	+	0.39	(0.36,0.392]	chr17	824944	78	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000610798.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.52068	4.279945	5.03921	0.00324516	9.59768e-5	0.0730386	0.00399331
chr2	62730694	62730794	1048837	0	+	0.39	(0.36,0.392]	chr2	111806	230	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.52068	4.279945	5.03921	0.00324516	9.59768e-5	0.0730386	0.00399331
chr5	867822	867917	3412373	0	-	0.389474	(0.36,0.392]	chr5	313803	15	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5:ENST00000518250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.52068	4.279945	5.03921	0.00324516	9.59768e-5	0.0730386	0.00399331
chr22	41838154	41838254	9955117	0	+	0.49	(0.459,0.49]	chr22	990561	44	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	4.04656	4.279555	4.51255	6.3564e-4	3.80472e-5	0.0193151	0.00181622
chr1	227637052	227637151	447166	0	+	0.484848	(0.459,0.49]	chr1	48054	541	INTRON	INTRON	ZNF678	ENSG00000181450.18	ENST00000608949.5:ENST00000465266.1:ENST00000343776.10:ENST00000440339.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.39129	4.279005	5.16672	0.00244536	7.74288e-6	0.0587626	4.39068e-4
chr2	88624745	88624837	1507941	0	-	0.467391	(0.459,0.49]	chr2	156371	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652736.1:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.39129	4.279005	5.16672	0.00244536	7.74288e-6	0.0587626	4.39068e-4
chrX	318238	318338	10248936	0	-	0.58	(0.57,0.629]	chrX	1021311	4	SS5_PROX	SS5_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.68887	4.277895	4.86692	1.98886e-4	4.28317e-5	0.00746609	0.0019752
chr20	43458133	43458140	9653892	0	+	0.285714	[0,0.32]	chr20	953629	1	CDS	CDS:EXON_MRNA	SRSF6	ENSG00000124193.16	ENST00000662078.1:ENST00000668808.1:ENST00000670741.1:ENST00000244020.5:ENST00000483871.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	61	2	4.20361	4.277565	4.35152	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	132034948	132035048	10225112	0	+	0.42	(0.392,0.424]	chrX	1018345	109	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	3.5367	4.276835	5.01697	9.9735e-7	7.03248e-9	7.00342e-5	7.35448e-7
chr11	11898781	11898879	6319911	0	+	0.438776	(0.424,0.459]	chr11	567351	7	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	3.2807	4.2766	5.2725	2.14921e-7	1.84447e-11	1.7005e-5	2.73328e-9
chrX	74217006	74217103	10376527	0	-	0.505155	(0.49,0.526]	chrX	1030048	11	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	3.9073	4.274285	4.64127	2.4929e-4	7.31994e-5	0.0089494	0.00316256
chrX	73826100	73826199	10373468	0	-	0.444444	(0.424,0.459]	chrX	1029941	56	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	10	51	2	3.49372	4.274135	5.05455	6.86133e-10	1e-12	8.23717e-8	1.73382e-10
chr17	66756328	66756427	8783465	0	+	0.565657	(0.526,0.57]	chr17	835705	132	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	3.68741	4.274005	4.8606	1.20404e-7	1.86203e-9	1.00551e-5	2.12626e-7
chr13	52629759	52629859	7388326	0	+	0.52	(0.49,0.526]	chr13	682677	4	SS5_PROX	SS5_PROX:INTRON	MRPS31P4	ENSG00000250299.6	ENST00000613769.4:ENST00000509685.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	14	2	3.50606	4.27392	5.04178	0.0010102	1.57703e-5	0.0282228	8.20905e-4
chr19	55608120	55608220	9388771	0	+	0.51	(0.49,0.526]	chr19	916340	20	INTRON	INTRON	ZNF865	ENSG00000261221.4	ENST00000568956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.50606	4.27392	5.04178	0.0010102	1.57703e-5	0.0282228	8.20905e-4
chr8	17726052	17726152	5123354	0	-	0.51	(0.49,0.526]	chr8	458947	15	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000520196.5:ENST00000693296.1:ENST00000262102.10:ENST00000519263.5:ENST00000518138.5:ENST00000523718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.50606	4.27392	5.04178	0.0010102	1.57703e-5	0.0282228	8.20905e-4
chr1	113016632	113016732	261968	0	+	0.52	(0.49,0.526]	chr1	27086	79	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr1	185089804	185089902	383057	0	+	0.520408	(0.49,0.526]	chr1	41185	18	INTRON	INTRON	RNF2	ENSG00000121481.11	ENST00000367509.8:ENST00000498201.1:ENST00000367510.8:ENST00000453650.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr10	42806512	42806612	5840538	0	+	0.52	(0.49,0.526]	chr10	524896	39	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr12	118133345	118133444	7294145	0	-	0.525253	(0.49,0.526]	chr12	672828	63	INTRON	INTRON	VSIG10	ENSG00000176834.14	ENST00000542011.1:ENST00000539956.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr12	121840448	121840548	7306036	0	-	0.5	(0.49,0.526]	chr12	674478	4	SS3_PROX	SS3_PROX:INTRON	HPD	ENSG00000158104.11	ENST00000289004.8:ENST00000543163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr14	94099060	94099158	7741161	0	+	0.520408	(0.49,0.526]	chr14	710568	10	INTRON	INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000557600.5:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5:ENST00000554562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr16	69921854	69921953	8425117	0	+	0.494949	(0.49,0.526]	chr16	789133	36	INTRON	INTRON	WWP2	ENSG00000198373.13	ENST00000359154.7:ENST00000544162.5:ENST00000356003.6:ENST00000569297.5:ENST00000567579.5:ENST00000566463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr17	5429929	5430026	8637768	0	+	0.494845	(0.49,0.526]	chr17	816021	18	UTR3	UTR3:EXON_MRNA:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000573126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr17	28559090	28559181	8898036	0	-	0.505495	(0.49,0.526]	chr17	852166	1	INTRON	INTRON	ENSG00000258472:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000484580.6:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr17	30799748	30799846	8907056	0	-	0.520408	(0.49,0.526]	chr17	853654	20	INTRON	INTRON	CRLF3	ENSG00000176390.12	ENST00000324238.7:ENST00000578692.1:ENST00000577725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr17	45056640	45056740	8944540	0	-	0.52	(0.49,0.526]	chr17	860303	51	INTRON	INTRON	DCAKD	ENSG00000172992.13	ENST00000342350.10:ENST00000310604.9:ENST00000687739.1:ENST00000688897.1:ENST00000688577.1:ENST00000588499.6:ENST00000692180.1:ENST00000693065.1:ENST00000691739.1:ENST00000687525.1:ENST00000687463.1:ENST00000685712.1:ENST00000692907.1:ENST00000689764.1:ENST00000688568.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr2	55357292	55357390	1451770	0	-	0.510204	(0.49,0.526]	chr2	150635	6	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr2	168680134	168680234	1199045	0	+	0.52	(0.49,0.526]	chr2	125668	487	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr20	31683169	31683268	9722510	0	-	0.50505	(0.49,0.526]	chr20	962371	157	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr20	36758917	36759017	9737389	0	-	0.51	(0.49,0.526]	chr20	964406	3	SS3_PROX	SS3_PROX:INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr22	23303261	23303361	9904511	0	+	0.5	(0.49,0.526]	chr22	983587	5	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000359540.7:ENST00000305877.13:ENST00000419722.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr4	73217579	73217679	2916734	0	-	0.51	(0.49,0.526]	chr4	274537	397	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr5	37334531	37334630	3443586	0	-	0.494949	(0.49,0.526]	chr5	316918	5	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr6	157311285	157311385	4245637	0	-	0.52	(0.49,0.526]	chr6	386012	179	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr7	19980368	19980468	4650003	0	-	0.5	(0.49,0.526]	chr7	417905	116	INTRON	INTRON	ENSG00000243004	ENSG00000243004.7	ENST00000457921.6:ENST00000691231.1:ENST00000449573.5:ENST00000435968.5:ENST00000415499.5:ENST00000437191.5:ENST00000424516.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr9	6827957	6828057	5331021	0	+	0.5	(0.49,0.526]	chr9	477152	90	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr9	92856818	92856916	5664324	0	-	0.520408	(0.49,0.526]	chr9	507266	1	INTRON	INTRON	ZNF484	ENSG00000127081.14	ENST00000375495.8:ENST00000395505.6:ENST00000395506.7:ENST00000332591.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chrX	150695059	150695158	10239857	0	+	0.525253	(0.49,0.526]	chrX	1019603	10	INTRON	INTRON	MTMR1	ENSG00000063601.17	ENST00000493995.6:ENST00000439546.6:ENST00000429965.6:ENST00000434699.6:ENST00000485376.5:ENST00000370390.7:ENST00000490316.6:ENST00000445323.7:ENST00000542156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.08493	4.273865	4.4628	0.00395081	7.611e-4	0.0816719	0.0225125
chr12	49373685	49373785	6903001	0	+	0.48	(0.459,0.49]	chr12	629129	20	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.31269	4.27386	5.23503	0.00308309	5.25256e-6	0.0699986	3.11102e-4
chr3	24453750	24453850	2217253	0	-	0.46	(0.459,0.49]	chr3	214684	232	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.31269	4.27386	5.23503	0.00308309	5.25256e-6	0.0699986	3.11102e-4
chr1	70367116	70367208	196188	0	+	0.521739	(0.49,0.526]	chr1	21112	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HHLA3	ENSG00000197568.15	ENST00000361764.9:ENST00000689607.1:ENST00000370940.7:ENST00000486110.2:ENST00000463058.6:ENST00000359875.9:ENST00000531950.1:ENST00000525653.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr1	243430955	243431055	484387	0	+	0.5	(0.49,0.526]	chr1	51215	40	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1:ENST00000463042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr11	65873234	65873334	6626264	0	-	0.52	(0.49,0.526]	chr11	606133	3	SS5_PROX	SS5_PROX:INTRON	EFEMP2	ENSG00000172638.13	ENST00000527378.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr11	117027553	117027652	6751419	0	-	0.50505	(0.49,0.526]	chr11	616028	701	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr19	34369202	34369302	9327811	0	+	0.5	(0.49,0.526]	chr19	904249	1	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr2	20783822	20783921	1393529	0	-	0.50505	(0.49,0.526]	chr2	144405	85	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000626491.2:ENST00000432947.1:ENST00000412261.5:ENST00000402479.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr5	146205819	146205919	3349021	0	+	0.52	(0.49,0.526]	chr5	307452	16	INTRON	INTRON	RBM27	ENSG00000091009.8	ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr6	34599972	34600072	4043726	0	-	0.51	(0.49,0.526]	chr6	368555	90	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr7	45040823	45040923	4385965	0	+	0.52	(0.49,0.526]	chr7	395015	20	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1:ENST00000478169.5:ENST00000475551.5:ENST00000381112.7:ENST00000474617.1:ENST00000480658.5:ENST00000492883.5:ENST00000482714.5:ENST00000472223.5:ENST00000476594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr7	98334674	98334774	4784596	0	-	0.5	(0.49,0.526]	chr7	428598	140	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr9	116312847	116312947	5475009	0	+	0.51	(0.49,0.526]	chr9	489137	95	INTRON	INTRON	PAPPA	ENSG00000182752.10	ENST00000328252.4	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chrX	53416557	53416656	10345670	0	-	0.50505	(0.49,0.526]	chrX	1027440	10	INTRON	INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chrX	118430686	118430785	10208300	0	+	0.494949	(0.49,0.526]	chrX	1016610	194	INTRON	INTRON	WDR44	ENSG00000131725.14	ENST00000371822.9:ENST00000254029.8:ENST00000371825.7:ENST00000371848.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.15714	4.273445000000001	4.38975	0.00319561	9.92102e-4	0.0699484	0.0276375
chr18	44753731	44753831	9109719	0	+	0.48	(0.459,0.49]	chr18	879662	515	INTRON	INTRON	SETBP1	ENSG00000152217.20	ENST00000426838.8:ENST00000677068.1:ENST00000649279.2:ENST00000677699.1:ENST00000678152.1:ENST00000677077.1:ENST00000677130.1:ENST00000645568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.96686	4.27331	4.57976	4.98571e-4	5.54129e-5	0.0160179	0.00252909
chr6	165836295	165836395	4269109	0	-	0.53	(0.526,0.57]	chr6	386909	72	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	205	2	4.16695	4.27313	4.37931	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	12825620	12825720	6326414	0	+	0.28	[0,0.32]	chr11	567860	608	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.75039	4.273015	4.79564	0.00182075	5.01883e-4	0.0469284	0.0161742
chr11	94968794	94968893	6710993	0	-	0.30303	[0,0.32]	chr11	613107	20	INTRON	INTRON	CWC15	ENSG00000150316.12	ENST00000279839.8:ENST00000616442.4:ENST00000621358.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.75039	4.273015	4.79564	0.00182075	5.01883e-4	0.0469284	0.0161742
chr16	67559515	67559615	8574044	0	-	0.32	[0,0.32]	chr16	808083	67	INTRON	INTRON	ENSG00000261386	ENSG00000261386.2	ENST00000605277.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.75039	4.273015	4.79564	0.00182075	5.01883e-4	0.0469284	0.0161742
chr4	165895343	165895443	2782866	0	+	0.27	[0,0.32]	chr4	263894	199	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.75039	4.273015	4.79564	0.00182075	5.01883e-4	0.0469284	0.0161742
chr11	63752745	63752819	6409743	0	+	0.445946	(0.424,0.459]	chr11	575561	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.83155	4.272895	4.71424	3.07139e-4	1.07528e-5	0.0105767	5.78423e-4
chr12	107750016	107750116	7271682	0	-	0.5	(0.49,0.526]	chr12	669827	32	INTRON	INTRON	PRDM4	ENSG00000110851.12	ENST00000228437.10:ENST00000550376.5:ENST00000550659.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	3.61409	4.27175	4.92941	4.32628e-5	1.16311e-5	0.00200309	6.41146e-4
chr15	43589972	43590063	8148252	0	-	0.703297	(0.629,1]	chr15	754941	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PPIP5K1	ENSG00000168781.23	ENST00000334933.8:ENST00000360135.8:ENST00000360301.8:ENST00000420765.6:ENST00000381879.8:ENST00000488768.5:ENST00000453080.5:ENST00000417085.2:ENST00000431962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	3.95371	4.271705	4.5897	1.10589e-8	4.09337e-9	1.11909e-6	4.41126e-7
chr2	130856197	130856297	1142489	0	+	0.34	(0.32,0.36]	chr2	122517	181	INTRON	INTRON	ARHGEF4	ENSG00000136002.20	ENST00000409359.7:ENST00000526381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	4.16471	4.271505	4.3783	9.22891e-5	2.30074e-7	0.00388567	1.8106e-5
chr12	20392833	20392933	6842292	0	+	0.41	(0.392,0.424]	chr12	625044	222	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	36	2	3.43456	4.271295	5.10803	6.23893e-8	1e-12	5.43481e-6	1.73382e-10
chr19	2128789	2128889	9405665	0	-	0.79	(0.629,1]	chr19	919651	3	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.05121	4.27109	5.49097	0.00356029	9.87659e-8	0.0753972	8.31085e-6
chr2	182368490	182368590	1635906	0	-	0.33	(0.32,0.36]	chr2	168577	1037	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	51	2	4.05296	4.2709399999999995	4.48892	1.79501e-12	1e-12	3.0107e-10	1.72912e-10
chr13	25323090	25323190	7335912	0	+	0.32	[0,0.32]	chr13	678186	16	INTRON	INTRON	NUP58	ENSG00000139496.17	ENST00000481980.2:ENST00000490231.6:ENST00000695571.1:ENST00000477876.2:ENST00000695572.1:ENST00000463407.6:ENST00000695573.1:ENST00000381736.8:ENST00000695583.1:ENST00000466694.6:ENST00000381718.8:ENST00000695575.1:ENST00000695574.1:ENST00000381747.7:ENST00000695576.1:ENST00000394327.2:ENST00000695577.1:ENST00000695584.1:ENST00000476553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	3.4411	4.270645	5.10019	9.57415e-4	9.14777e-9	0.0269423	9.40372e-7
chrX	73851124	73851224	10373724	0	-	0.53	(0.526,0.57]	chrX	1029968	138	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000429829.6:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	3.97495	4.27046	4.56597	3.21576e-5	1.06735e-7	0.00156852	9.05517e-6
chr17	43294252	43294352	8938404	0	-	0.59	(0.57,0.629]	chr17	859071	641	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	15	121	2	4.17005	4.270405	4.37076	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	103915784	103915880	7919594	0	-	0.59375	(0.57,0.629]	chr14	730389	2	INTRON	INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2:ENST00000557260.1:ENST00000554528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	3.60603	4.27014	4.93425	2.87788e-4	2.91369e-5	0.0101506	0.00141183
chr16	688941	689041	8487701	0	-	0.62	(0.57,0.629]	chr16	794448	4	SS5_PROX	SS5_PROX:INTRON	WDR24	ENSG00000127580.17	ENST00000293883.9:ENST00000647644.1:ENST00000248142.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.60603	4.27014	4.93425	2.87788e-4	2.91369e-5	0.0101506	0.00141183
chr17	67740602	67740701	8787483	0	+	0.262626	[0,0.32]	chr17	835891	6	INTRON	INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000583108.5:ENST00000583021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	10	2	3.36243	4.2698149999999995	5.1772	0.00121149	5.87341e-5	0.0321344	0.00262682
chr6	21092810	21092909	3731380	0	+	0.292929	[0,0.32]	chr6	338647	272	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.36243	4.2698149999999995	5.1772	0.00121149	5.87341e-5	0.0321344	0.00262682
chr5	1600426	1600525	3414700	0	-	0.555556	(0.526,0.57]	chr5	314324	2	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	20	133	2	3.96299	4.269775	4.57656	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	23267066	23267166	9468665	0	-	0.32	[0,0.32]	chr19	931671	33	INTRON	INTRON	ENSG00000284428	ENSG00000284428.1	ENST00000640838.1:ENST00000639752.1:ENST00000639327.1:ENST00000638822.1:ENST00000640517.1:ENST00000640354.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.6742	4.2697	4.8652	0.00220802	4.11137e-4	0.053911	0.0138446
chr5	98890632	98890731	3554775	0	-	0.232323	[0,0.32]	chr5	323826	10	INTRON	INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.6742	4.2697	4.8652	0.00220802	4.11137e-4	0.053911	0.0138446
chr5	139583381	139583481	3334315	0	+	0.28	[0,0.32]	chr5	306100	206	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.6742	4.2697	4.8652	0.00220802	4.11137e-4	0.053911	0.0138446
chr6	2968480	2968579	3992737	0	-	0.292929	[0,0.32]	chr6	361704	22	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.6742	4.2697	4.8652	0.00220802	4.11137e-4	0.053911	0.0138446
chrX	73841334	73841434	10373626	0	-	0.37	(0.36,0.392]	chrX	1029968	40	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	25	93	2	3.66702	4.26945	4.87188	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	21517422	21517520	9993426	0	-	0.765306	(0.629,1]	chr22	995285	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	PI4KAP2	ENSG00000183506.17	ENST00000450651.5:ENST00000479693.1:ENST00000476537.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	1	22	2	3.23526	4.26908	5.3029	0.00139352	7.37915e-7	0.037038	5.32314e-5
chr7	100317021	100317121	4790082	0	-	0.56	(0.526,0.57]	chr7	429414	159	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	10	71	2	4.11567	4.268739999999999	4.42181	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	85217902	85218002	5207393	0	-	0.41	(0.392,0.424]	chr8	466243	3	SS3_PROX	SS3_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523281.5:ENST00000523245.1:ENST00000321777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	39	2	4.19185	4.268644999999999	4.34544	3.03463e-11	2.53753e-12	4.3995e-9	4.16121e-10
chr4	54729334	54729409	2621629	0	+	0.373333	(0.36,0.392]	chr4	251409	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIT	ENSG00000157404.17	ENST00000689994.1:ENST00000687295.1:ENST00000687109.1:ENST00000692783.1:ENST00000412167.7:ENST00000686011.1:ENST00000687246.1:ENST00000288135.6:ENST00000690543.1:ENST00000689832.1:ENST00000692991.1:ENST00000685269.1:ENST00000687208.1:ENST00000690917.1:ENST00000687265.1:ENST00000691361.1:ENST00000512959.1:ENST00000688704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	58	220	2	4.2055	4.267745	4.32999	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	169264620	169264720	3085645	0	-	0.47	(0.459,0.49]	chr4	285589	1076	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	4.17407	4.267435000000001	4.3608	2.23014e-6	1.51914e-10	1.43671e-4	2.00813e-8
chr10	900711	900810	6037259	0	-	0.515152	(0.49,0.526]	chr10	541807	110	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	3.41836	4.267245	5.11613	0.00136895	1.03252e-5	0.0359623	5.57702e-4
chr8	125188793	125188893	5085974	0	+	0.52	(0.49,0.526]	chr8	455136	61	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.81887	4.26688	4.71489	1.81396e-4	1.1017e-4	0.0069054	0.00452792
chr19	862591	862691	9258801	0	+	0.63	(0.629,1]	chr19	891510	1	SS3_PROX	SS3_PROX:INTRON	CFD	ENSG00000197766.9	ENST00000695942.1:ENST00000695943.1:ENST00000327726.11:ENST00000592860.3:ENST00000695945.1:ENST00000695944.1:ENST00000695946.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.33315	4.265969999999999	5.19879	2.27928e-5	2.01813e-6	0.00115649	1.31579e-4
chr5	34952840	34952937	3146056	0	+	0.536082	(0.526,0.57]	chr5	290587	2	INTRON	INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.62355	4.265784999999999	4.90802	4.05302e-4	4.81512e-5	0.0135138	0.00220626
chr11	7990491	7990590	6311436	0	+	0.353535	(0.32,0.36]	chr11	566335	29	EXON_MRNA	EXON_MRNA:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	33	2	4.20005	4.265750000000001	4.33145	1.33735e-8	1e-12	1.33922e-6	1.72912e-10
chr6	165709918	165710018	4267837	0	-	0.52	(0.49,0.526]	chr6	386874	468	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	4.05296	4.265644999999999	4.47833	3.41555e-7	8.11406e-8	2.60631e-5	7.06304e-6
chr5	171946698	171946798	3662710	0	-	0.44	(0.424,0.459]	chr5	333078	319	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	26	2	3.88169	4.265219999999999	4.64875	4.26366e-6	2.48943e-10	2.53741e-4	3.17004e-8
chr1	44072775	44072873	131841	0	+	0.510204	(0.49,0.526]	chr1	16075	25	INTRON	INTRON	ENSG00000230615	ENSG00000230615.8	ENST00000434244.5:ENST00000431800.2:ENST00000437643.1:ENST00000616338.2:ENST00000453688.5:ENST00000447959.1:ENST00000609027.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	3.24778	4.2646	5.28142	2.46593e-6	1.42103e-7	1.54892e-4	1.18109e-5
chr6	44247086	44247140	3785559	0	+	0.62963	(0.629,1]	chr6	347450	1	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.87133	4.264325	5.65732	8.70021e-5	1.32388e-8	0.00370273	1.32707e-6
chr12	25227233	25227325	7121314	0	-	0.369565	(0.36,0.392]	chr12	653922	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000688228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	3.59498	4.26409	4.9332	1.28326e-5	1.6984e-11	6.90028e-4	2.5267e-9
chr7	158944982	158945080	4600837	0	+	0.632653	(0.629,1]	chr7	414341	25	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1:ENST00000454771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	4.12843	4.2614350000000005	4.39444	0.00233396	6.41849e-4	0.0563219	0.0196462
chr9	94417345	94417444	5434500	0	+	0.646465	(0.629,1]	chr9	485146	17	INTRON	INTRON	MFSD14B	ENSG00000148110.17	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.18344	4.261215	4.33899	0.00183228	8.51164e-4	0.0469284	0.0245129
chr4	109039068	109039168	2990510	0	-	0.48	(0.459,0.49]	chr4	280097	283	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	3.89251	4.26098	4.62945	1.23517e-6	4.09469e-11	8.43676e-5	5.774e-9
chr10	118336415	118336423	6270766	0	-	0.25	[0,0.32]	chr10	560920	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000470476.5:ENST00000469758.5:ENST00000369172.8:ENST00000369170.4:ENST00000490048.1:ENST00000487269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	4.06239	4.260755	4.45912	3.10398e-4	1.18389e-5	0.0109114	6.49715e-4
chr3	31808734	31808834	2224561	0	-	0.32	[0,0.32]	chr3	215353	105	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1:ENST00000467647.1:ENST00000428241.1:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	4.06239	4.260755	4.45912	3.10398e-4	1.18389e-5	0.0109114	6.49715e-4
chr5	131383842	131383942	3316047	0	+	0.31	[0,0.32]	chr5	304092	239	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	4.06239	4.260755	4.45912	3.10398e-4	1.18389e-5	0.0109114	6.49715e-4
chr10	95630180	95630279	6212886	0	-	0.565657	(0.526,0.57]	chr10	555785	13	INTRON	INTRON	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr10	97755869	97755968	5953337	0	+	0.565657	(0.526,0.57]	chr10	533997	23	INTRON	INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr10	102774951	102775051	5965974	0	+	0.55	(0.526,0.57]	chr10	535891	305	INTRON	INTRON	WBP1L	ENSG00000166272.18	ENST00000448841.7:ENST00000647664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr15	30917002	30917098	7933507	0	+	0.5625	(0.526,0.57]	chr15	732586	10	INTRON	INTRON	FAN1	ENSG00000198690.10	ENST00000667837.1:ENST00000656435.1:ENST00000654056.1:ENST00000657391.1:ENST00000568145.6:ENST00000670849.1:ENST00000655421.1:ENST00000664070.1:ENST00000654013.1:ENST00000664837.1:ENST00000670074.1:ENST00000665894.1:ENST00000565280.5:ENST00000656307.1:ENST00000666852.1:ENST00000656109.1:ENST00000362065.9:ENST00000662114.1:ENST00000602886.2:ENST00000661974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr16	53120300	53120400	8385090	0	+	0.55	(0.526,0.57]	chr16	783733	207	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1:ENST00000565832.5:ENST00000564582.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr18	24027180	24027280	9083720	0	+	0.56	(0.526,0.57]	chr18	877876	70	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000578150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr7	5484712	5484811	4617055	0	-	0.555556	(0.526,0.57]	chr7	415852	24	INTRON	INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5:ENST00000382368.8:ENST00000453700.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr8	6522185	6522285	4919900	0	+	0.55	(0.526,0.57]	chr8	439936	218	INTRON	INTRON	MCPH1	ENSG00000147316.15	ENST00000690826.1:ENST00000692938.1:ENST00000693231.1:ENST00000688388.1:ENST00000344683.10:ENST00000690708.1:ENST00000689348.1:ENST00000690159.1:ENST00000689736.1:ENST00000689633.1:ENST00000691435.1:ENST00000692836.1:ENST00000687720.1:ENST00000688101.1:ENST00000689148.1:ENST00000687324.1:ENST00000521175.2:ENST00000519221.6:ENST00000521129.2:ENST00000687413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chrX	68518569	68518669	10148586	0	+	0.53	(0.526,0.57]	chrX	1011626	4	SS3_PROX	SS3_PROX:INTRON	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.07767	4.25968	4.44169	0.00403601	8.21639e-4	0.0817225	0.0238903
chr17	5187059	5187158	8853913	0	-	0.424242	(0.392,0.424]	chr17	846344	24	INTRON	INTRON	ZNF594	ENSG00000180626.10	ENST00000575779.2:ENST00000576772.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.40795	4.2596	5.11125	5.07532e-4	3.31137e-5	0.0162102	0.00159224
chr7	75370331	75370430	4433468	0	+	0.414141	(0.392,0.424]	chr7	398712	28	INTRON	INTRON	STAG3L1	ENSG00000205583.14	ENST00000619870.4:ENST00000404291.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	12	2	3.40795	4.2596	5.11125	5.07532e-4	3.31137e-5	0.0162102	0.00159224
chr4	108906171	108906271	2989170	0	-	0.61	(0.57,0.629]	chr4	280046	46	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	3.77045	4.25939	4.74833	1.07277e-4	9.07674e-5	0.00442346	0.00383949
chr13	112491190	112491290	7567063	0	-	0.28	[0,0.32]	chr13	696196	11	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	39	2	3.8819	4.259345	4.63679	3.37069e-9	1e-12	3.69694e-7	1.72912e-10
chr10	102143398	102143498	5961714	0	+	0.53	(0.526,0.57]	chr10	535105	3	SS5_PROX	SS5_PROX:INTRON	PPRC1	ENSG00000148840.11	ENST00000413464.6:ENST00000278070.7:ENST00000370012.1:ENST00000489648.5:ENST00000462933.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr11	102122587	102122687	6478830	0	+	0.54	(0.526,0.57]	chr11	585354	78	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr12	53508722	53508820	7169467	0	-	0.561224	(0.526,0.57]	chr12	660252	3	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr14	45141009	45141109	7613936	0	+	0.57	(0.526,0.57]	chr14	700458	3	SS5_PROX	SS5_PROX:INTRON	FANCM	ENSG00000187790.12	ENST00000267430.10:ENST00000556250.6:ENST00000696641.1:ENST00000556036.6:ENST00000696646.1:ENST00000696647.1:ENST00000542564.6:ENST00000696675.1:ENST00000696642.1:ENST00000696649.1:ENST00000696648.1:ENST00000696662.1:ENST00000696681.1:ENST00000696680.1:ENST00000696657.1:ENST00000696656.1:ENST00000696678.1:ENST00000696679.1:ENST00000696677.1:ENST00000696650.1:ENST00000696643.1:ENST00000696658.1:ENST00000696682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr16	57751260	57751302	8401633	0	+	0.547619	(0.526,0.57]	chr16	785862	1	CDS	CDS:EXON_MRNA	KATNB1	ENSG00000140854.13	ENST00000562592.5:ENST00000379661.8:ENST00000566726.5:ENST00000566611.5:ENST00000569627.1:ENST00000563127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr17	66564676	66564776	8781534	0	+	0.55	(0.526,0.57]	chr17	835634	97	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr18	59352580	59352680	9238392	0	-	0.56	(0.526,0.57]	chr18	889653	11	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr19	39842951	39843049	9495830	0	-	0.530612	(0.526,0.57]	chr19	935204	18	INTRON	INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000594443.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr21	41877198	41877297	9883742	0	-	0.535354	(0.526,0.57]	chr21	980322	52	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000269844.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr6	24663623	24663722	4018758	0	-	0.545455	(0.526,0.57]	chr6	363810	45	INTRON	INTRON	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3:ENST00000478507.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr7	138971490	138971590	4866012	0	-	0.54	(0.526,0.57]	chr7	435478	517	INTRON	INTRON	KIAA1549	ENSG00000122778.10	ENST00000422774.2:ENST00000440172.5	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chrX	49090216	49090315	10340769	0	-	0.545455	(0.526,0.57]	chrX	1026833	95	INTRON	INTRON	WDR45	ENSG00000196998.19	ENST00000356463.7:ENST00000634849.1:ENST00000634671.1:ENST00000634908.1:ENST00000460501.2:ENST00000634939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	4.13626	4.259335	4.38241	0.00339748	0.00101891	0.0728314	0.0276375
chr7	7867029	7867129	4306735	0	+	0.38	(0.36,0.392]	chr7	390283	649	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	24	2	3.96418	4.258775	4.55337	3.41715e-7	5.5302e-9	2.60631e-5	5.86903e-7
chr1	28396313	28396413	88584	0	+	0.45	(0.424,0.459]	chr1	9633	261	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	4.11093	4.2584599999999995	4.40599	0.00154565	5.36389e-5	0.0389999	0.00243585
chr15	80738012	80738112	8054740	0	+	0.44	(0.424,0.459]	chr15	744488	325	INTRON	INTRON	ABHD17C	ENSG00000136379.12	ENST00000560609.1:ENST00000258884.5:ENST00000558464.1:ENST00000559506.5:ENST00000560126.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	4.11093	4.2584599999999995	4.40599	0.00154565	5.36389e-5	0.0389999	0.00243585
chr3	36994532	36994631	1827478	0	+	0.444444	(0.424,0.459]	chr3	184886	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000476172.6:ENST00000673686.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	4.11093	4.2584599999999995	4.40599	0.00154565	5.36389e-5	0.0389999	0.00243585
chr2	222871650	222871749	1319410	0	+	0.535354	(0.526,0.57]	chr2	136501	57	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.88187	4.2578700000000005	4.63387	2.57391e-4	8.23795e-5	0.00911512	0.00351856
chr1	224408146	224408246	867568	0	-	0.43	(0.424,0.459]	chr1	96548	32	INTRON	INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.3314	4.25764	5.18388	0.00517898	1.21594e-5	0.0992178	6.58699e-4
chr10	17710948	17711047	5800262	0	+	0.444444	(0.424,0.459]	chr10	522347	16	INTRON	INTRON	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.3314	4.25764	5.18388	0.00517898	1.21594e-5	0.0992178	6.58699e-4
chr11	64775399	64775499	6623183	0	-	0.44	(0.424,0.459]	chr11	605157	15	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.3314	4.25764	5.18388	0.00517898	1.21594e-5	0.0992178	6.58699e-4
chr9	122019136	122019236	5721608	0	-	0.44	(0.424,0.459]	chr9	513051	290	INTRON	INTRON	TTLL11	ENSG00000175764.17	ENST00000321582.11:ENST00000373778.5:ENST00000474723.5:ENST00000685478.1:ENST00000373776.5:ENST00000487468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.3314	4.25764	5.18388	0.00517898	1.21594e-5	0.0992178	6.58699e-4
chr12	28324045	28324145	6858024	0	+	0.34	(0.32,0.36]	chr12	626432	159	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.22173	4.257455	5.29318	5.53769e-4	1.5251e-5	0.0175806	8.01855e-4
chr7	72994666	72994766	4729527	0	-	0.41	(0.392,0.424]	chr7	424043	143	INTRON	INTRON	STAG3L3	ENSG00000174353.17	ENST00000436857.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	13	2	3.90178	4.2573550000000004	4.61293	8.49057e-4	7.45573e-6	0.0240064	4.27499e-4
chr12	48771616	48771709	7158485	0	-	0.548387	(0.526,0.57]	chr12	657719	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADCY6	ENSG00000174233.12	ENST00000357869.8:ENST00000547260.5:ENST00000550422.5:ENST00000307885.4:ENST00000552099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	45	2	3.74224	4.256575	4.77091	1.85884e-9	1e-12	2.12626e-7	1.73382e-10
chr5	82280759	82280859	3240791	0	+	0.41	(0.392,0.424]	chr5	299190	4	SS3_PROX	SS3_PROX:INTRON	ATP6AP1L	ENSG00000205464.13	ENST00000380167.8	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	3	18	2	3.97957	4.25638	4.53319	4.95123e-6	1.61757e-6	2.96695e-4	1.08646e-4
chr1	150413025	150413125	294321	0	+	0.48	(0.459,0.49]	chr1	31086	36	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	41	2	2.98682	4.25581	5.5248	4.32524e-7	1e-12	3.23452e-5	1.73382e-10
chr17	40087265	40087353	8713388	0	+	0.465909	(0.459,0.49]	chr17	826272	4	SS5_PROX	SS5_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	3.75166	4.25428	4.7569	2.02903e-7	1.37759e-8	1.62135e-5	1.37123e-6
chr13	75815762	75815862	7397173	0	+	0.41	(0.392,0.424]	chr13	683296	62	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	3.34508	4.252815	5.16055	1.6765e-6	4.63789e-10	1.10008e-4	5.6824e-8
chr17	19911373	19911473	8893428	0	-	0.43	(0.424,0.459]	chr17	851637	10	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000578898.1:ENST00000395536.7:ENST00000583951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.23804	4.2528	5.26756	0.00649971	8.0232e-6	0.114061	4.54299e-4
chr20	14192314	14192414	9585234	0	+	0.48	(0.459,0.49]	chr20	948045	1062	INTRON	INTRON	MACROD2	ENSG00000172264.18	ENST00000217246.8:ENST00000477147.5:ENST00000684519.1:ENST00000642719.1:ENST00000494602.5:ENST00000490428.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	4.0895	4.2524	4.4153	8.98032e-7	1.7943e-7	6.37943e-5	1.45035e-5
chr4	54261094	54261173	2620484	0	+	0.443038	(0.424,0.459]	chr4	251195	1	CDS	CDS:EXON_MRNA:INTRON	PDGFRA	ENSG00000134853.12	ENST00000508170.5:ENST00000509092.5:ENST00000257290.10:ENST00000512143.1:ENST00000509490.5:ENST00000503856.5:ENST00000504461.5:ENST00000512522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	71	2	4.01746	4.25225	4.48704	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	34295885	34295985	9727781	0	-	0.53	(0.526,0.57]	chr20	963071	3	SS3_PROX	SS3_PROX:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000468908.1:ENST00000606061.1:ENST00000473516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	3.40949	4.25207	5.09465	0.00141136	1.16684e-5	0.0368074	6.16746e-4
chr11	118561184	118561283	6508929	0	+	0.444444	(0.424,0.459]	chr11	589102	6	EXON_PSEUDO	EXON_PSEUDO	RPL5P30	ENSG00000243431.1	ENST00000465511.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	11	2	4.01593	4.251975	4.48802	0.00121831	8.03177e-5	0.0326347	0.00342222
chr22	40801863	40801963	10042354	0	-	0.55	(0.526,0.57]	chr22	1001242	18	INTRON	INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	3.80992	4.2517700000000005	4.69362	1.98837e-4	1.14789e-4	0.00746609	0.00467969
chr11	48094874	48094974	6396138	0	+	0.61	(0.57,0.629]	chr11	573271	482	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	4.21821	4.251215	4.28422	0.00185391	0.00145677	0.0459841	0.0382827
chr11	62714111	62714210	6616978	0	-	0.59596	(0.57,0.629]	chr11	604059	16	UTR3	UTR3:EXON_MRNA	HNRNPUL2	ENSG00000214753.4	ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.21821	4.251215	4.28422	0.00185391	0.00145677	0.0459841	0.0382827
chr17	4332678	4332774	8851647	0	-	0.583333	(0.57,0.629]	chr17	845745	4	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	4.21821	4.251215	4.28422	0.00185391	0.00145677	0.0459841	0.0382827
chr22	30878893	30878992	9929141	0	+	0.606061	(0.57,0.629]	chr22	986154	65	INTRON	INTRON	OSBP2	ENSG00000184792.16	ENST00000438716.3:ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000446658.6:ENST00000401475.5:ENST00000445781.5:ENST00000424224.5:ENST00000437268.6	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.21821	4.251215	4.28422	0.00185391	0.00145677	0.0459841	0.0382827
chrX	108165038	108165138	10402648	0	-	0.58	(0.57,0.629]	chrX	1032338	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL4A6	ENSG00000197565.17	ENST00000372216.8:ENST00000621266.4:ENST00000538570.5:ENST00000394872.6:ENST00000334504.12	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	4.21821	4.251215	4.28422	0.00185391	0.00145677	0.0459841	0.0382827
chr1	40501888	40501988	578602	0	-	0.44	(0.424,0.459]	chr1	65640	78	INTRON	INTRON	EXO5-DT	ENSG00000238287.1	ENST00000450713.1	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr1	65211871	65211970	184023	0	+	0.454545	(0.424,0.459]	chr1	20321	207	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr1	183345041	183345141	818425	0	-	0.43	(0.424,0.459]	chr1	90899	403	INTRON	INTRON	NMNAT2	ENSG00000157064.11	ENST00000287713.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr10	18612585	18612683	6077557	0	-	0.428571	(0.424,0.459]	chr10	544958	23	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr12	50151060	50151158	7163082	0	-	0.459184	(0.424,0.459]	chr12	659041	21	INTRON	INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr12	53393106	53393206	6914544	0	+	0.43	(0.424,0.459]	chr12	630971	91	INTRON	INTRON	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr12	53444654	53444750	6914822	0	+	0.427083	(0.424,0.459]	chr12	631008	5	INTRON	INTRON	PRR13	ENSG00000205352.11	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000549068.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000549135.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr15	29768123	29768221	8113978	0	-	0.459184	(0.424,0.459]	chr15	750908	12	INTRON	INTRON	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6:ENST00000495972.6	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr15	70739846	70739946	8228153	0	-	0.43	(0.424,0.459]	chr15	763538	367	INTRON	INTRON	UACA	ENSG00000137831.15	ENST00000322954.11:ENST00000539319.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr16	8833839	8833939	8313428	0	+	0.44	(0.424,0.459]	chr16	774670	47	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr17	16123322	16123420	8882656	0	-	0.438776	(0.424,0.459]	chr17	849991	8	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr2	70075245	70075343	1480408	0	-	0.459184	(0.424,0.459]	chr2	153180	16	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr2	144416107	144416207	1577283	0	-	0.43	(0.424,0.459]	chr2	163269	107	INTRON	INTRON	ZEB2	ENSG00000169554.23	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000689298.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr20	44585903	44586003	9658004	0	+	0.44	(0.424,0.459]	chr20	954097	3	INTRON	INTRON	PKIG	ENSG00000168734.14	ENST00000372891.7:ENST00000372892.7:ENST00000372894.7:ENST00000372889.5:ENST00000372887.5:ENST00000477390.5:ENST00000372886.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr21	33577631	33577727	9860457	0	-	0.458333	(0.424,0.459]	chr21	978994	2	UTR3	UTR3:EXON_MRNA:INTRON	DONSON	ENSG00000159147.18	ENST00000439593.1:ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr22	20494680	20494777	9991326	0	-	0.43299	(0.424,0.459]	chr22	994913	11	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr3	60363220	60363320	2304913	0	-	0.43	(0.424,0.459]	chr3	225034	2825	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr3	155886242	155886341	2047182	0	+	0.454545	(0.424,0.459]	chr3	204527	150	INTRON	INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr3	188846214	188846314	2137950	0	+	0.44	(0.424,0.459]	chr3	209708	856	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr4	39897492	39897591	2877764	0	-	0.444444	(0.424,0.459]	chr4	271336	68	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr4	169664131	169664230	2789869	0	+	0.444444	(0.424,0.459]	chr4	264232	33	INTRON	INTRON	CLCN3	ENSG00000109572.15	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr5	134809828	134809927	3322311	0	+	0.434343	(0.424,0.459]	chr5	305086	15	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr6	157850373	157850472	3954125	0	+	0.434343	(0.424,0.459]	chr6	358916	203	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr7	114202061	114202161	4511509	0	+	0.45	(0.424,0.459]	chr7	406662	386	INTRON	INTRON	FOXP2	ENSG00000128573.27	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000495516.1:ENST00000634411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr7	127724099	127724199	4535010	0	+	0.44	(0.424,0.459]	chr7	407861	23	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr7	131300181	131300281	4548767	0	+	0.43	(0.424,0.459]	chr7	409212	147	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr8	131939880	131939964	5092419	0	+	0.428571	(0.424,0.459]	chr8	455514	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EFR3A	ENSG00000132294.15	ENST00000254624.10:ENST00000522709.5:ENST00000637848.1:ENST00000520362.5:ENST00000519656.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr9	122948227	122948327	5482765	0	+	0.45	(0.424,0.459]	chr9	490041	24	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000317419.7:ENST00000459903.5:ENST00000402311.5:ENST00000426918.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr9	123028428	123028528	5483581	0	+	0.44	(0.424,0.459]	chr9	490117	76	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chrX	19678750	19678849	10289366	0	-	0.444444	(0.424,0.459]	chrX	1023419	79	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379726.7:ENST00000379697.7:ENST00000494961.5:ENST00000432234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chrX	31164849	31164949	10300026	0	-	0.45	(0.424,0.459]	chrX	1024229	165	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000481143.2:ENST00000378723.7:ENST00000681989.1:ENST00000681026.1:ENST00000679437.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000679850.1:ENST00000680701.1:ENST00000680557.1:ENST00000620040.5:ENST00000684072.1:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000684350.1:ENST00000682207.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000679706.1:ENST00000681153.1:ENST00000683503.1:ENST00000683995.1:ENST00000684342.1:ENST00000683957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chrX	46505716	46505815	10334767	0	-	0.434343	(0.424,0.459]	chrX	1025832	40	INTRON	INTRON	ZNF674	ENSG00000251192.8	ENST00000683375.1:ENST00000523374.5:ENST00000414387.6:ENST00000518795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.01346	4.25074	4.48802	0.00778514	0.00121831	0.130982	0.0326347
chr11	122374278	122374378	6765972	0	-	0.35	(0.32,0.36]	chr11	617631	64	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	3	12	2	3.10453	4.250145	5.39576	8.28985e-4	9.86331e-6	0.024032	5.39872e-4
chr1	51741890	51741988	144373	0	+	0.428571	(0.424,0.459]	chr1	17627	13	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr1	53006094	53006194	149517	0	+	0.44	(0.424,0.459]	chr1	18163	97	INTRON	INTRON	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr10	97287092	97287192	6220658	0	-	0.45	(0.424,0.459]	chr10	556403	166	INTRON	INTRON	ARHGAP19	ENSG00000213390.11	ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000466484.1:ENST00000493068.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr11	111663200	111663300	6492475	0	+	0.44	(0.424,0.459]	chr11	586972	424	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr12	1640476	1640574	6794486	0	+	0.44898	(0.424,0.459]	chr12	620310	1	INTRON	INTRON	WNT5B	ENSG00000111186.13	ENST00000537031.5:ENST00000310594.7:ENST00000397196.7:ENST00000543071.5:ENST00000542408.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr14	23089183	23089282	7777486	0	-	0.454545	(0.424,0.459]	chr14	716037	70	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr15	67670647	67670747	8015889	0	+	0.45	(0.424,0.459]	chr15	741231	2	SS5_PROX	SS5_PROX:INTRON	MAP2K5	ENSG00000137764.20	ENST00000178640.10:ENST00000395476.6:ENST00000354498.9:ENST00000558392.5:ENST00000559262.5:ENST00000340972.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr16	84710417	84710516	8468391	0	+	0.444444	(0.424,0.459]	chr16	791792	12	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr16	87477995	87478094	8618207	0	-	0.454545	(0.424,0.459]	chr16	812805	175	INTRON	INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr17	4964337	4964436	8853254	0	-	0.434343	(0.424,0.459]	chr17	846124	31	INTRON	INTRON	SPAG7	ENSG00000091640.8	ENST00000206020.8:ENST00000575142.5:ENST00000573366.5:ENST00000575784.2:ENST00000573805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr17	28825508	28825608	8900168	0	-	0.45	(0.424,0.459]	chr17	852757	132	INTRON	INTRON	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000579381.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr17	43184862	43184961	8719851	0	+	0.454545	(0.424,0.459]	chr17	827896	37	INTRON	INTRON	NBR1	ENSG00000188554.15	ENST00000341165.10:ENST00000542611.5:ENST00000590996.6:ENST00000589872.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr17	44061504	44061604	8940533	0	-	0.43	(0.424,0.459]	chr17	859435	209	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr18	758430	758529	9166018	0	-	0.434343	(0.424,0.459]	chr18	883238	12	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577961.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr2	64539672	64539772	1054196	0	+	0.43	(0.424,0.459]	chr2	112267	147	INTRON	INTRON	AFTPH	ENSG00000119844.17	ENST00000695864.1:ENST00000238856.8:ENST00000409933.6:ENST00000695867.1:ENST00000695960.1:ENST00000695866.1:ENST00000695865.1:ENST00000695869.1:ENST00000695868.1:ENST00000498706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr2	97560464	97560564	1517202	0	-	0.43	(0.424,0.459]	chr2	158064	4	SS5_PROX	SS5_PROX:INTRON	ANKRD36B	ENSG00000196912.13	ENST00000359901.9:ENST00000258459.12:ENST00000443455.5:ENST00000419390.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr2	130951407	130951506	1143446	0	+	0.454545	(0.424,0.459]	chr2	122538	43	INTRON	INTRON	ARHGEF4	ENSG00000136002.20	ENST00000409359.7:ENST00000326016.10:ENST00000428230.6:ENST00000611048.4:ENST00000636987.1:ENST00000438985.5:ENST00000392953.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr20	32076505	32076604	9624179	0	+	0.454545	(0.424,0.459]	chr20	949880	14	INTRON	INTRON	HCK	ENSG00000101336.18	ENST00000375862.7:ENST00000375852.5:ENST00000520553.5:ENST00000262651.4:ENST00000486475.6:ENST00000629881.2:ENST00000518730.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr3	152275165	152275265	2043556	0	+	0.43	(0.424,0.459]	chr3	204333	50	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr5	142994264	142994364	3346623	0	+	0.43	(0.424,0.459]	chr5	307330	245	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000451259.1:ENST00000469131.6:ENST00000469396.5:ENST00000645625.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr6	589470	589570	3983710	0	-	0.43	(0.424,0.459]	chr6	361284	122	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr7	64916330	64916429	4396215	0	+	0.454545	(0.424,0.459]	chr7	396133	126	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5:ENST00000489672.5:ENST00000476120.2:ENST00000395375.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr7	69678855	69678955	4407500	0	+	0.44	(0.424,0.459]	chr7	396954	152	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr7	100339389	100339484	4490701	0	+	0.442105	(0.424,0.459]	chr7	404075	1	INTRON	INTRON	STAG3L5P	ENSG00000242294.6	ENST00000473757.5:ENST00000422479.5:ENST00000488972.6:ENST00000493499.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr7	148827766	148827860	4883113	0	-	0.425532	(0.424,0.459]	chr7	436979	1	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1:ENST00000682401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr8	23445402	23445500	5143373	0	-	0.459184	(0.424,0.459]	chr8	460262	4	INTRON	INTRON	ENTPD4	ENSG00000197217.13	ENST00000356206.10:ENST00000358689.9:ENST00000417069.6:ENST00000523958.5:ENST00000519839.1:ENST00000518718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chrX	33315075	33315175	10321658	0	-	0.45	(0.424,0.459]	chrX	1024753	1037	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000288447.9	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	4.09426	4.250125000000001	4.40599	0.00651192	0.00154565	0.116758	0.0389999
chr14	76033182	76033282	7710190	0	+	0.38	(0.36,0.392]	chr14	708679	104	INTRON	INTRON	IFT43	ENSG00000119650.13	ENST00000679083.1:ENST00000314067.11:ENST00000542766.5:ENST00000555305.5:ENST00000554026.5:ENST00000238628.10:ENST00000555370.5:ENST00000556742.1:ENST00000553438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	11	2	3.45885	4.249029999999999	5.03921	4.24507e-4	9.59768e-5	0.0140677	0.00399331
chr8	38417305	38417360	5159705	0	-	0.527273	(0.526,0.57]	chr8	462148	1	CDS	CDS:UTR3:EXON_MRNA	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000526570.5:ENST00000674474.1:ENST00000397103.5:ENST00000524528.2:ENST00000682398.1:ENST00000397108.8:ENST00000533619.5:ENST00000527114.5:ENST00000487647.5:ENST00000466021.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	52	2	4.17073	4.246964999999999	4.3232	1.76137e-12	1e-12	2.95927e-10	1.72912e-10
chr9	130705040	130705138	5515034	0	+	0.479592	(0.459,0.49]	chr9	495040	14	UTR3	UTR3:EXON_MRNA:INTRON	EXOSC2	ENSG00000130713.17	ENST00000691284.1:ENST00000691104.1:ENST00000688258.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	19	2	4.21222	4.24648	4.28074	9.25181e-6	3.57604e-6	5.14007e-4	2.18487e-4
chr4	77922048	77922148	2657326	0	+	0.28	[0,0.32]	chr4	253715	123	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000504901.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	4.02472	4.245645	4.46657	0.00288167	8.66912e-6	0.0662445	4.85864e-4
chr18	74987973	74988073	9152678	0	+	0.32	[0,0.32]	chr18	882083	669	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	17	58	2	3.89094	4.2447	4.59846	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	24297501	24297601	9194756	0	-	0.4	(0.392,0.424]	chr18	886117	162	INTRON	INTRON	OSBPL1A	ENSG00000141447.19	ENST00000319481.8:ENST00000357041.8:ENST00000584119.1:ENST00000578091.5:ENST00000579851.5:ENST00000581043.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	3.98591	4.24386	4.50181	6.6292e-8	8.22103e-9	5.85414e-6	8.47625e-7
chr5	171212636	171212735	3389782	0	+	0.363636	(0.36,0.392]	chr5	310994	49	INTRON	INTRON	RANBP17	ENSG00000204764.14	ENST00000389118.8:ENST00000523189.6:ENST00000522533.5:ENST00000522066.5:ENST00000519949.5:ENST00000519256.5:ENST00000521759.5:ENST00000524364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	31	2	4.07257	4.243105	4.41364	1.95544e-9	2.01138e-10	2.20322e-7	2.60682e-8
chr7	129952636	129952717	4844130	0	-	0.82716	(0.629,1]	chr7	433970	2	UTR5	UTR5:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000472396.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.79995	4.242789999999999	4.68563	1.13329e-4	2.99254e-5	0.00463413	0.00144698
chr5	108766692	108766792	3267937	0	+	0.38	(0.36,0.392]	chr5	301157	173	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000509035.5:ENST00000281092.9:ENST00000513676.5:ENST00000504143.6:ENST00000502752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	4.08645	4.2427150000000005	4.39898	1.23682e-4	8.56612e-8	0.0049353	7.38607e-6
chr11	120365227	120365327	6512804	0	+	0.28	[0,0.32]	chr11	589892	276	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.05093	4.24225	5.43357	0.00583312	8.40147e-6	0.107081	4.71048e-4
chr19	57826218	57826317	9395726	0	+	0.454545	(0.424,0.459]	chr19	917451	53	INTRON	INTRON	ZNF587B	ENSG00000269343.9	ENST00000651253.2:ENST00000594328.1	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	4.19261	4.241415	4.29022	1.51694e-11	1.01008e-12	2.27994e-9	1.74544e-10
chr1	92837383	92837455	233406	0	+	0.208333	[0,0.32]	chr1	23317	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000315741.5:ENST00000645908.1:ENST00000497519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	21	2	3.4396	4.240955	5.04231	1.83564e-6	3.40623e-8	1.20418e-4	3.14246e-6
chr3	159796205	159796305	2067966	0	+	0.42	(0.392,0.424]	chr3	205328	307	INTRON	INTRON	IQCJ-SCHIP1	ENSG00000283154.3	ENST00000485419.7:ENST00000476809.7:ENST00000638749.2:ENST00000412423.8:ENST00000527095.7:ENST00000689690.1:ENST00000460298.3:ENST00000638311.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.15287	4.240270000000001	5.32767	0.00224427	5.95442e-6	0.0552099	3.4453e-4
chr17	42813747	42813847	8935668	0	-	0.38	(0.36,0.392]	chr17	858609	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BECN1	ENSG00000126581.13	ENST00000590099.6:ENST00000617806.4:ENST00000361523.8:ENST00000590764.1:ENST00000438274.7:ENST00000588276.5:ENST00000543382.6:ENST00000589663.5:ENST00000587880.1:ENST00000586589.5:ENST00000586754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	13	2	3.51234	4.23976	4.96718	1.24104e-4	3.96166e-5	0.0049353	0.00188516
chr18	62242869	62242969	9135286	0	+	0.34	(0.32,0.36]	chr18	881314	76	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000591227.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	5	20	2	3.6285	4.23972	4.85094	1.10958e-6	2.73185e-7	7.61206e-5	2.11622e-5
chr12	120211696	120211792	7032204	0	+	0.583333	(0.57,0.629]	chr12	644138	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	PXN-AS1	ENSG00000255857.7	ENST00000542265.7:ENST00000667721.2:ENST00000535200.2:ENST00000684870.1:ENST00000693713.1:ENST00000667017.1:ENST00000539446.6	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	2.75803	4.239635	5.72124	0.0030545	1.18386e-8	0.0697796	1.18974e-6
chr1	22436892	22436992	71057	0	+	0.48	(0.459,0.49]	chr1	7081	75	INTRON	INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr1	174917180	174917280	357639	0	+	0.46	(0.459,0.49]	chr1	38971	392	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5:ENST00000478442.5:ENST00000465412.5:ENST00000486220.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr11	111687300	111687400	6492716	0	+	0.49	(0.459,0.49]	chr11	586972	665	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr11	117220514	117220612	6752304	0	-	0.479592	(0.459,0.49]	chr11	616070	3	EXON_MRNA	EXON_MRNA:INTRON	PCSK7	ENSG00000160613.15	ENST00000320934.8:ENST00000676339.1:ENST00000524507.6:ENST00000534529.5:ENST00000528217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr12	48664729	48664828	7157941	0	-	0.484848	(0.459,0.49]	chr12	657613	17	INTRON	INTRON	KANSL2	ENSG00000139620.13	ENST00000420613.7:ENST00000548147.5:ENST00000550347.5:ENST00000546701.5:ENST00000547087.5:ENST00000549574.5:ENST00000553086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr12	49589747	49589847	6904999	0	+	0.46	(0.459,0.49]	chr12	629346	56	INTRON	INTRON	PRPF40B	ENSG00000110844.14	ENST00000547764.1:ENST00000551063.5:ENST00000527253.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr12	57410676	57410775	7182026	0	-	0.474747	(0.459,0.49]	chr12	663024	145	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr13	98191725	98191825	7425336	0	+	0.47	(0.459,0.49]	chr13	684124	134	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr14	61769140	61769240	7647351	0	+	0.49	(0.459,0.49]	chr14	703799	4	SS5_PROX	SS5_PROX:INTRON	SNAPC1	ENSG00000023608.5	ENST00000216294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr14	63937414	63937514	7650295	0	+	0.47	(0.459,0.49]	chr14	703894	278	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000341472.9:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr14	71412552	71412651	7686440	0	+	0.474747	(0.459,0.49]	chr14	706538	113	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr15	76280745	76280844	8241894	0	-	0.474747	(0.459,0.49]	chr15	765480	59	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1:ENST00000560816.5:ENST00000558803.1:ENST00000559758.5:ENST00000560345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr16	85005906	85006005	8613670	0	-	0.484848	(0.459,0.49]	chr16	812433	10	INTRON	INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr16	89977104	89977204	8484640	0	+	0.49	(0.459,0.49]	chr16	793722	1	SS3_PROX	SS3_PROX:INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000431757.5:ENST00000450026.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000423742.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000421164.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr17	32177405	32177504	8699147	0	+	0.484848	(0.459,0.49]	chr17	823875	8	INTRON	INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000581094.5:ENST00000578205.5:ENST00000580976.1:ENST00000394692.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr17	73050592	73050692	9007002	0	-	0.49	(0.459,0.49]	chr17	868511	185	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5:ENST00000582179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr2	73055740	73055840	1492523	0	-	0.47	(0.459,0.49]	chr2	154056	18	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000416579.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5:ENST00000479293.5:ENST00000485057.5:ENST00000475630.5:ENST00000472259.5:ENST00000484123.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr22	23746517	23746617	9996794	0	-	0.46	(0.459,0.49]	chr22	995765	9	INTRON	INTRON	ZNF70	ENSG00000187792.5	ENST00000341976.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr3	179585945	179586045	2115308	0	+	0.46	(0.459,0.49]	chr3	207086	21	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000484312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr4	446827	446927	2812865	0	-	0.48	(0.459,0.49]	chr4	266106	20	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr4	41108920	41109020	2881608	0	-	0.47	(0.459,0.49]	chr4	271537	78	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000506352.5:ENST00000509446.5:ENST00000508707.5:ENST00000503264.5:ENST00000508676.5:ENST00000503503.5:ENST00000506999.5:ENST00000503555.5:ENST00000511572.5:ENST00000502682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr5	139583581	139583680	3334317	0	+	0.464646	(0.459,0.49]	chr5	306100	208	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr6	37981792	37981892	3772205	0	+	0.46	(0.459,0.49]	chr6	345070	514	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr7	75470604	75470704	4734293	0	-	0.49	(0.459,0.49]	chr7	425003	280	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr7	129941406	129941505	4844014	0	-	0.474747	(0.459,0.49]	chr7	433954	38	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr8	117982623	117982723	5257882	0	-	0.47	(0.459,0.49]	chr8	469752	1451	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000684189.1:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr9	98125864	98125956	5677800	0	-	0.48913	(0.459,0.49]	chr9	508531	6	INTRON	INTRON	CORO2A	ENSG00000106789.13	ENST00000375077.5:ENST00000343933.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr9	123028528	123028627	5483582	0	+	0.474747	(0.459,0.49]	chr9	490117	77	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.20634	4.23959	4.27284	0.00276656	0.00227779	0.0641652	0.0552099
chr1	40999049	40999142	121741	0	+	0.505376	(0.49,0.526]	chr1	14281	12	INTRON	INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000372616.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	4.14455	4.23872	4.33289	1.63358e-12	1e-12	2.74612e-10	1.72912e-10
chr10	31434657	31434757	5828591	0	+	0.35	(0.32,0.36]	chr10	523991	446	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.96554	4.237925	5.51031	0.00254567	2.41138e-6	0.0610271	1.53938e-4
chr5	37690196	37690296	3154956	0	+	0.38	(0.36,0.392]	chr5	291430	18	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	34	2	3.9764	4.2374	4.4984	1.38818e-10	9.1492e-11	1.8506e-8	1.23546e-8
chrX	73841434	73841534	10373627	0	-	0.43	(0.424,0.459]	chrX	1029968	41	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	18	88	2	4.23425	4.236945	4.23964	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	95928635	95928734	3552066	0	-	0.383838	(0.36,0.392]	chr5	323467	87	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	56	2	3.99118	4.23554	4.4799	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	131994173	131994269	7057489	0	+	0.416667	(0.392,0.424]	chr12	647206	16	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000333577.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.54722	4.23512	4.92302	1.52245e-4	1.45314e-4	0.0058275	0.00569484
chr3	11300414	11300514	1764704	0	+	0.37	(0.36,0.392]	chr3	181491	6	INTRON	INTRON	ATG7	ENSG00000197548.13	ENST00000451513.5:ENST00000451830.5:ENST00000460444.5:ENST00000693202.1:ENST00000435760.6:ENST00000685771.1:ENST00000444619.5:ENST00000418682.5:ENST00000354449.7:ENST00000354956.9:ENST00000446450.6:ENST00000419112.5:ENST00000469654.2:ENST00000423116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	4.08645	4.235105	4.38376	1.23682e-4	1.64803e-5	0.0049353	8.48507e-4
chr12	46508102	46508202	6894065	0	+	0.37	(0.36,0.392]	chr12	628512	130	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	4.16662	4.234965	4.30331	9.16296e-5	2.34074e-5	0.00387303	0.00116109
chr14	23549051	23549150	7778964	0	-	0.363636	(0.36,0.392]	chr14	716321	7	INTRON	INTRON	ZFHX2	ENSG00000136367.15	ENST00000419474.5:ENST00000412565.2	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	4.16662	4.234965	4.30331	9.16296e-5	2.34074e-5	0.00387303	0.00116109
chr17	47186964	47187062	8953121	0	-	0.367347	(0.36,0.392]	chr17	861214	50	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000575483.5:ENST00000532893.5:ENST00000528748.5:ENST00000532575.1:ENST00000528147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	4.16662	4.234965	4.30331	9.16296e-5	2.34074e-5	0.00387303	0.00116109
chr2	148032435	148032534	1164278	0	+	0.383838	(0.36,0.392]	chr2	123763	39	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000469438.1:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	4.16662	4.234965	4.30331	9.16296e-5	2.34074e-5	0.00387303	0.00116109
chr19	11179915	11180014	9435435	0	-	0.585859	(0.57,0.629]	chr19	925493	8	INTRON	INTRON	KANK2	ENSG00000197256.11	ENST00000586659.6:ENST00000589359.5:ENST00000589894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	4.00133	4.2348	4.46827	5.2773e-4	1.78261e-5	0.0167673	9.13271e-4
chr11	121496868	121496958	6515459	0	+	0.433333	(0.424,0.459]	chr11	590220	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	203	2	3.74268	4.23476	4.72684	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	67718485	67718583	5621484	0	-	0.469388	(0.459,0.49]	chr9	504105	12	EXON_LNCRNA	EXON_LNCRNA	FAM27E3	ENSG00000274026.2	ENST00000418795.3	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	3.63487	4.23379	4.83271	1.09213e-4	1.69661e-5	0.00442392	8.71289e-4
chr2	9495067	9495167	1376842	0	-	0.5	(0.49,0.526]	chr2	142514	3	SS3_PROX	SS3_PROX:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	3.42424	4.23301	5.04178	8.36246e-5	1.57703e-5	0.00356417	8.20905e-4
chr10	7350431	7350531	6044271	0	-	0.51	(0.49,0.526]	chr10	542595	17	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.25894	4.232885	5.20683	2.88576e-4	3.9703e-6	0.010254	2.39291e-4
chr2	121583107	121583207	1556506	0	-	0.41	(0.392,0.424]	chr2	161434	524	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.7075	4.232735	4.75797	9.40427e-4	2.01084e-7	0.0266969	1.60882e-5
chr1	21156473	21156573	537561	0	-	0.31	[0,0.32]	chr1	59083	435	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	4.0431	4.232065	4.42103	2.05936e-7	1.77666e-7	1.66568e-5	1.4379e-5
chr19	2001858	2001958	9404596	0	-	0.5	(0.49,0.526]	chr19	919421	40	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	4.0726	4.231175	4.38975	9.92102e-4	1.93553e-5	0.0276375	9.87839e-4
chr2	210564829	210564928	1295979	0	+	0.474747	(0.459,0.49]	chr2	134054	76	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	4.04656	4.230930000000001	4.4153	3.80472e-5	8.98032e-7	0.00181622	6.37943e-5
chr3	136840070	136840165	2448788	0	-	0.484211	(0.459,0.49]	chr3	234929	12	INTRON	INTRON	NCK1-DT	ENSG00000239213.7	ENST00000661609.1	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	4.04656	4.230930000000001	4.4153	3.80472e-5	8.98032e-7	0.00181622	6.37943e-5
chr4	89817845	89817945	2957759	0	-	0.34	(0.32,0.36]	chr4	277924	460	INTRON	INTRON	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	3.32165	4.23061	5.13957	1.85259e-4	6.71414e-5	0.00691112	0.00291649
chr15	90988519	90988619	8273967	0	-	0.52	(0.49,0.526]	chr15	768697	21	INTRON	INTRON	PRC1	ENSG00000198901.14	ENST00000394249.8:ENST00000361188.9:ENST00000442656.6:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1:ENST00000557905.5:ENST00000555791.5:ENST00000555745.5:ENST00000559811.1:ENST00000556129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	3.25397	4.2303999999999995	5.20683	0.00365962	3.9703e-6	0.0766409	2.39291e-4
chr18	79146348	79146447	9156708	0	+	0.656566	(0.629,1]	chr18	882393	21	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.8818	4.230145	4.57849	0.0064023	2.2493e-4	0.114061	0.00827964
chr19	50488487	50488586	9378938	0	+	0.636364	(0.629,1]	chr19	914400	59	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.8818	4.230145	4.57849	0.0064023	2.2493e-4	0.114061	0.00827964
chr22	37141452	37141548	10031427	0	-	0.666667	(0.629,1]	chr22	999481	19	INTRON	INTRON	IL2RB	ENSG00000100385.14	ENST00000216223.10:ENST00000453962.5:ENST00000429622.5:ENST00000461607.5:ENST00000440958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.8818	4.230145	4.57849	0.0064023	2.2493e-4	0.114061	0.00827964
chr7	112101916	112102016	4823164	0	-	0.63	(0.629,1]	chr7	432278	974	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.8818	4.230145	4.57849	0.0064023	2.2493e-4	0.114061	0.00827964
chr1	179354727	179354826	365891	0	+	0.292929	[0,0.32]	chr1	39553	12	UTR3	UTR3:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	4.06239	4.230105	4.39782	0.00334699	3.10398e-4	0.0734189	0.0109114
chr19	36581231	36581327	9333514	0	+	0.270833	[0,0.32]	chr19	905927	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF529-AS1	ENSG00000233527.10	ENST00000475219.6:ENST00000670019.1:ENST00000687100.1:ENST00000592880.6:ENST00000670806.1:ENST00000494214.2	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	4.06239	4.230105	4.39782	0.00334699	3.10398e-4	0.0734189	0.0109114
chr3	129900309	129900409	1990567	0	+	0.32	[0,0.32]	chr3	200494	58	INTRON	INTRON	TMCC1-DT	ENSG00000271270.8	ENST00000605830.6:ENST00000686063.1:ENST00000690344.1:ENST00000605698.2:ENST00000603884.5:ENST00000671446.1:ENST00000653304.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	4.06239	4.230105	4.39782	0.00334699	3.10398e-4	0.0734189	0.0109114
chr9	88458024	88458124	5420526	0	+	0.28	[0,0.32]	chr9	484000	87	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	4.06239	4.230105	4.39782	0.00334699	3.10398e-4	0.0734189	0.0109114
chrX	31177060	31177159	10300153	0	-	0.232323	[0,0.32]	chrX	1024241	36	EXON_MRNA	EXON_MRNA:INTRON	DMD	ENSG00000198947.18	ENST00000378723.7:ENST00000681989.1:ENST00000681026.1:ENST00000679437.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000679850.1:ENST00000680557.1:ENST00000620040.5:ENST00000684072.1:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000679706.1:ENST00000681153.1:ENST00000683957.1:ENST00000378705.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	4.06239	4.230105	4.39782	0.00334699	3.10398e-4	0.0734189	0.0109114
chr18	47917175	47917274	9219231	0	-	0.272727	[0,0.32]	chr18	888152	200	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.35176	4.229455	5.10715	0.0102933	7.53496e-5	0.170122	0.00322158
chr3	197977698	197977795	2151536	0	+	0.298969	[0,0.32]	chr3	211122	6	INTRON	INTRON	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000482695.5:ENST00000419117.5:ENST00000420910.7:ENST00000451139.6:ENST00000332636.5:ENST00000482837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.35176	4.229455	5.10715	0.0102933	7.53496e-5	0.170122	0.00322158
chr12	44027921	44028021	6884666	0	+	0.63	(0.629,1]	chr12	628131	832	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.9362	4.229445	4.52269	0.0052327	3.10525e-4	0.0992178	0.0106515
chr14	35809022	35809116	7808234	0	-	0.744681	(0.629,1]	chr14	718930	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000556192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.9362	4.229445	4.52269	0.0052327	3.10525e-4	0.0992178	0.0106515
chr15	75558531	75558631	8239833	0	-	0.63	(0.629,1]	chr15	765261	309	INTRON	INTRON	PTPN9	ENSG00000169410.11	ENST00000618819.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.9362	4.229445	4.52269	0.0052327	3.10525e-4	0.0992178	0.0106515
chr8	79767480	79767574	5199099	0	-	0.787234	(0.629,1]	chr8	465739	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HEY1	ENSG00000164683.18	ENST00000674177.1:ENST00000674418.1:ENST00000354724.8:ENST00000337919.9:ENST00000521111.2:ENST00000523531.2:ENST00000674160.1:ENST00000674439.1:ENST00000674358.1:ENST00000519075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.9362	4.229445	4.52269	0.0052327	3.10525e-4	0.0992178	0.0106515
chr10	49477568	49477663	6127339	0	-	0.578947	(0.57,0.629]	chr10	548908	9	INTRON	INTRON	ERCC6	ENSG00000225830.16	ENST00000681659.1:ENST00000681632.1:ENST00000355832.10:ENST00000623073.3:ENST00000623115.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	4.17442	4.2293199999999995	4.28422	0.00145677	2.71799e-6	0.0382827	1.71473e-4
chr12	20624609	20624709	6844617	0	+	0.36	(0.32,0.36]	chr12	625071	28	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	39	2	3.87109	4.227055	4.58302	1.75027e-11	1.2671e-12	2.60849e-9	2.16307e-10
chr4	15582166	15582266	2578671	0	+	0.19	[0,0.32]	chr4	247597	16	INTRON	INTRON	CC2D2A	ENSG00000048342.18	ENST00000503292.6:ENST00000424120.6:ENST00000389652.11:ENST00000506643.5:ENST00000674945.1:ENST00000650860.2:ENST00000634028.2:ENST00000680586.1:ENST00000675768.1:ENST00000514039.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.27638	4.22679	5.1772	0.0118823	5.87341e-5	0.184357	0.00262682
chr13	33143770	33143869	7481518	0	-	0.575758	(0.57,0.629]	chr13	689245	10	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000399365.7:ENST00000255486.8:ENST00000567873.1:ENST00000487412.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.91804	4.22645	4.53486	3.95206e-4	2.83782e-5	0.0135724	0.0013972
chr9	137208007	137208107	5529373	0	+	0.58	(0.57,0.629]	chr9	497898	13	INTRON	INTRON	NDOR1	ENSG00000188566.15	ENST00000613750.1:ENST00000371521.8:ENST00000612145.1:ENST00000684003.1:ENST00000427047.6:ENST00000458322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	3.91804	4.22645	4.53486	3.95206e-4	2.83782e-5	0.0135724	0.0013972
chr17	514545	514644	8829458	0	-	0.494949	(0.49,0.526]	chr17	842532	60	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	3.4798	4.226185	4.97257	3.92552e-5	3.72383e-10	0.00184909	4.65717e-8
chr10	91999846	91999945	5936199	0	+	0.262626	[0,0.32]	chr10	532501	17	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.98571	4.22614	4.46657	0.00288167	3.95466e-4	0.0662445	0.0132556
chr11	96167706	96167806	6714962	0	-	0.28	[0,0.32]	chr11	613450	738	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.98571	4.22614	4.46657	0.00288167	3.95466e-4	0.0662445	0.0132556
chr12	31398074	31398174	7134458	0	-	0.3	[0,0.32]	chr12	655280	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.98571	4.22614	4.46657	0.00288167	3.95466e-4	0.0662445	0.0132556
chr7	76412472	76412571	4436608	0	+	0.272727	[0,0.32]	chr7	399103	143	INTRON	INTRON	ZP3	ENSG00000188372.15	ENST00000336517.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.98571	4.22614	4.46657	0.00288167	3.95466e-4	0.0662445	0.0132556
chr1	235110312	235110409	889676	0	-	0.525773	(0.49,0.526]	chr1	99071	11	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	4.22088	4.22581	4.23074	5.07325e-6	6.49275e-9	3.03611e-4	6.78195e-7
chr1	155469392	155469492	776510	0	-	0.61	(0.57,0.629]	chr1	85727	64	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr11	61819386	61819486	6406412	0	+	0.61	(0.57,0.629]	chr11	574937	23	INTRON	INTRON	FADS2	ENSG00000134824.14	ENST00000574708.5:ENST00000257261.10:ENST00000522639.1:ENST00000522056.5:ENST00000517839.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr12	124841791	124841891	7318547	0	-	0.6	(0.57,0.629]	chr12	676231	237	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr16	30976469	30976568	8371740	0	+	0.626263	(0.57,0.629]	chr16	781924	44	INTRON	INTRON	SETD1A	ENSG00000099381.19	ENST00000262519.14:ENST00000684162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr16	57161701	57161801	8563184	0	-	0.59	(0.57,0.629]	chr16	806187	68	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566403.5:ENST00000389447.9:ENST00000565956.5:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr19	49600238	49600338	9375525	0	+	0.58	(0.57,0.629]	chr19	913431	3	SS5_PROX	SS5_PROX:INTRON	PRR12	ENSG00000126464.15	ENST00000418929.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr19	55287006	55287101	9387706	0	+	0.578947	(0.57,0.629]	chr19	916059	1	CDS	CDS:EXON_MRNA	BRSK1	ENSG00000160469.17	ENST00000590333.5:ENST00000592539.6:ENST00000309383.6:ENST00000585418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr5	32294061	32294161	3431624	0	-	0.62	(0.57,0.629]	chr5	315655	170	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.91553	4.225195	4.53486	0.00651627	3.95206e-4	0.114061	0.0135724
chr11	944696	944794	6294995	0	+	0.602041	(0.57,0.629]	chr11	564244	10	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	3.98068	4.224475	4.46827	0.0053729	5.2773e-4	0.100211	0.0167673
chr16	70482921	70483021	8581490	0	-	0.59	(0.57,0.629]	chr16	809452	1	SS3_PROX	SS3_PROX:INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5:ENST00000564315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.98068	4.224475	4.46827	0.0053729	5.2773e-4	0.100211	0.0167673
chr17	30625100	30625198	8691208	0	+	0.602041	(0.57,0.629]	chr17	822851	8	EXON_PSEUDO	EXON_PSEUDO	SH3GL1P2	ENSG00000264943.1	ENST00000582245.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	10	2	3.98068	4.224475	4.46827	0.0053729	5.2773e-4	0.100211	0.0167673
chr3	142827897	142827996	2460235	0	-	0.59596	(0.57,0.629]	chr3	236337	39	INTRON	INTRON	PCOLCE2	ENSG00000163710.9	ENST00000470310.5:ENST00000295992.8:ENST00000470795.5:ENST00000648195.1:ENST00000485766.1:ENST00000480473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.98068	4.224475	4.46827	0.0053729	5.2773e-4	0.100211	0.0167673
chr7	151467711	151467809	4887960	0	-	0.602041	(0.57,0.629]	chr7	437793	1	INTRON	INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.98068	4.224475	4.46827	0.0053729	5.2773e-4	0.100211	0.0167673
chr20	58984122	58984220	9683743	0	+	0.5	(0.49,0.526]	chr20	956633	24	INTRON	INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000492016.5:ENST00000471621.5:ENST00000652272.2:ENST00000460601.5:ENST00000482747.1:ENST00000464363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.98392	4.22336	4.4628	7.611e-4	3.07012e-5	0.0225125	0.00150487
chr9	117070453	117070552	5708695	0	-	0.40404	(0.392,0.424]	chr9	512004	301	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	3.10951	4.22218	5.33485	4.28069e-4	4.44158e-11	0.0141511	6.22225e-9
chr3	136883988	136884088	2012885	0	+	0.35	(0.32,0.36]	chr3	202168	161	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	3.87259	4.221555	4.57052	3.96495e-5	2.95142e-6	0.00188516	1.84947e-4
chr20	53336261	53336361	9676245	0	+	0.44	(0.424,0.459]	chr20	955971	793	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10:ENST00000603338.2:ENST00000605656.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	3.56675	4.219799999999999	4.87285	7.38392e-5	2.03044e-8	0.0032006	1.97932e-6
chr7	107929837	107929936	4508152	0	+	0.383838	(0.36,0.392]	chr7	406410	88	INTRON	INTRON	DLD	ENSG00000091140.15	ENST00000417551.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	16	2	3.94713	4.219465	4.4918	1.25643e-5	4.36875e-6	6.61709e-4	2.58808e-4
chr17	48090482	48090581	8955612	0	-	0.424242	(0.392,0.424]	chr17	861594	18	INTRON	INTRON	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5:ENST00000495350.5:ENST00000444685.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	4.05097	4.21943	4.38789	1.60652e-6	4.13968e-8	1.08441e-4	3.74186e-6
chrX	19833425	19833525	10290925	0	-	0.59	(0.57,0.629]	chrX	1023468	338	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.68887	4.2185500000000005	4.74823	1.98886e-4	2.15631e-9	0.00746609	2.42843e-7
chr1	16596308	16596407	524943	0	-	0.333333	(0.32,0.36]	chr1	56972	9	INTRON	INTRON	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000392963.5:ENST00000420513.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.70951	4.218005	4.7265	0.00201951	6.12159e-4	0.0510613	0.0189985
chr2	216498874	216498877	1310697	0	+	0.333333	(0.32,0.36]	chr2	134793	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1:ENST00000491306.6:ENST00000487233.1:ENST00000600880.5:ENST00000446558.5:ENST00000420712.1:ENST00000359681.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.70951	4.218005	4.7265	0.00201951	6.12159e-4	0.0510613	0.0189985
chr7	130637509	130637609	4846812	0	-	0.34	(0.32,0.36]	chr7	434382	201	INTRON	INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.70951	4.218005	4.7265	0.00201951	6.12159e-4	0.0510613	0.0189985
chr5	95956194	95956294	3552345	0	-	0.47	(0.459,0.49]	chr5	323481	128	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000635633.1:ENST00000515020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.81712	4.217905	4.61869	0.0120499	1.26997e-7	0.184357	1.06312e-5
chr3	52600825	52600925	2284426	0	-	0.54	(0.526,0.57]	chr3	223090	112	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000462207.1:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.22891	4.214119999999999	5.19933	0.00393565	4.16513e-6	0.0798064	2.48371e-4
chr1	150837966	150838063	763989	0	-	0.360825	(0.36,0.392]	chr1	82943	11	INTRON	INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5:ENST00000497108.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	4.16662	4.213625	4.26063	0.00451705	9.16296e-5	0.0875511	0.00387303
chr12	111841132	111841231	7281380	0	-	0.383838	(0.36,0.392]	chr12	671247	15	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAPKAPK5-AS1	ENSG00000234608.9	ENST00000692189.1:ENST00000442119.7:ENST00000428207.4:ENST00000456429.6:ENST00000443596.2:ENST00000590479.6:ENST00000688987.1:ENST00000656227.2:ENST00000652940.1:ENST00000656209.1:ENST00000609228.1:ENST00000609983.1	lncRNA	lncRNA	lncRNA	lncRNA	1	9	2	4.16662	4.213625	4.26063	0.00451705	9.16296e-5	0.0875511	0.00387303
chr3	48017619	48017719	2267410	0	-	0.38	(0.36,0.392]	chr3	219156	13	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	4.16662	4.213625	4.26063	0.00451705	9.16296e-5	0.0875511	0.00387303
chr16	69593628	69593728	8422364	0	+	0.35	(0.32,0.36]	chr16	788942	247	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.59803	4.21293	4.82783	0.00267453	4.57616e-4	0.0637459	0.0150584
chr2	55357881	55357979	1451776	0	-	0.357143	(0.32,0.36]	chr2	150635	12	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000647341.1:ENST00000644332.1:ENST00000430086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.59803	4.21293	4.82783	0.00267453	4.57616e-4	0.0637459	0.0150584
chr3	38507567	38507667	1838361	0	+	0.33	(0.32,0.36]	chr3	186106	2	INTRON	INTRON	EXOG	ENSG00000157036.13	ENST00000412107.5:ENST00000436414.5:ENST00000287675.10:ENST00000431472.5:ENST00000447573.5:ENST00000454803.6:ENST00000422077.6:ENST00000457367.5:ENST00000438992.5:ENST00000453767.1:ENST00000450732.1:ENST00000470291.6:ENST00000474071.5:ENST00000483749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.59803	4.21293	4.82783	0.00267453	4.57616e-4	0.0637459	0.0150584
chr5	59319185	59319285	3475436	0	-	0.33	(0.32,0.36]	chr5	319239	432	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.59803	4.21293	4.82783	0.00267453	4.57616e-4	0.0637459	0.0150584
chr7	2407900	2408000	4285450	0	+	0.36	(0.32,0.36]	chr7	388544	33	INTRON	INTRON	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000432336.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.59803	4.21293	4.82783	0.00267453	4.57616e-4	0.0637459	0.0150584
chr18	21573885	21573980	9188165	0	-	0.421053	(0.392,0.424]	chr18	885523	7	CDS	CDS:EXON_MRNA	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	75	2	3.50802	4.212265	4.91651	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	63545727	63545826	8002652	0	+	0.50505	(0.49,0.526]	chr15	739919	6	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000561442.5:ENST00000560070.5:ENST00000557884.5:ENST00000558157.5:ENST00000561326.5:ENST00000559873.5:ENST00000559192.5:ENST00000559771.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	4.15714	4.2117249999999995	4.26631	0.00319561	2.32598e-6	0.0699484	1.50793e-4
chr19	47512898	47512994	9519479	0	-	0.625	(0.57,0.629]	chr19	939629	2	INTRON	INTRON	NAPA	ENSG00000105402.8	ENST00000263354.8:ENST00000595227.5:ENST00000594001.5:ENST00000593761.5:ENST00000601208.5:ENST00000602082.5:ENST00000602174.5:ENST00000595826.5:ENST00000594740.5:ENST00000597274.5:ENST00000593785.5:ENST00000597160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	4.13538	4.211354999999999	4.28733	5.27543e-6	8.34421e-7	3.12112e-4	5.98026e-5
chr10	68774394	68774494	5873310	0	+	0.49	(0.459,0.49]	chr10	526955	9	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000265872.11:ENST00000539539.5:ENST00000540210.5:ENST00000543706.1:ENST00000398676.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.88247	4.210425	4.53838	0.0104144	2.24187e-7	0.170122	1.8079e-5
chr16	87709344	87709425	8618500	0	-	0.62963	(0.629,1]	chr16	812848	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000569487.1:ENST00000562155.5:ENST00000622456.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	63	2	4.08799	4.20989	4.33179	1.61604e-11	2.01439e-12	2.44635e-9	3.35164e-10
chr2	74054596	74054695	1079046	0	+	0.444444	(0.424,0.459]	chr2	114875	58	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8:ENST00000475405.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	3.5463	4.209575	4.87285	0.00153741	2.03044e-8	0.0389999	1.97932e-6
chrX	23995913	23996012	10296364	0	-	0.454545	(0.424,0.459]	chrX	1024038	65	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.5463	4.209575	4.87285	0.00153741	2.03044e-8	0.0389999	1.97932e-6
chr22	45798371	45798471	9963188	0	+	0.32	[0,0.32]	chr22	991694	42	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000435026.5:ENST00000493643.3:ENST00000451241.2:ENST00000402380.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	39	2	4.00569	4.2092600000000004	4.41283	1.54398e-11	1e-12	2.30229e-9	1.73382e-10
chr2	38482613	38482708	995348	0	+	0.547368	(0.526,0.57]	chr2	108331	9	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	3.15803	4.20895	5.25987	0.00482649	2.82947e-6	0.0920354	1.75466e-4
chr9	120456359	120456459	5712852	0	-	0.56	(0.526,0.57]	chr9	512127	21	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.15803	4.20895	5.25987	0.00482649	2.82947e-6	0.0920354	1.75466e-4
chr14	70355121	70355221	7860260	0	-	0.37	(0.36,0.392]	chr14	723904	120	INTRON	INTRON	COX16	ENSG00000133983.16	ENST00000389912.7:ENST00000557612.5:ENST00000555601.1:ENST00000555276.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	4.08645	4.208825	4.3312	0.00387074	1.23682e-4	0.078873	0.0049353
chr16	57179541	57179635	8563377	0	-	0.361702	(0.36,0.392]	chr16	806239	3	INTRON	INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1:ENST00000562400.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	4.08645	4.208825	4.3312	0.00387074	1.23682e-4	0.078873	0.0049353
chr17	78809314	78809412	9019351	0	-	0.377551	(0.36,0.392]	chr17	871157	13	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	4.08645	4.208825	4.3312	0.00387074	1.23682e-4	0.078873	0.0049353
chr5	57258096	57258196	3179214	0	+	0.39	(0.36,0.392]	chr5	293719	66	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5:ENST00000264779.6:ENST00000515484.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	4.08645	4.208825	4.3312	0.00387074	1.23682e-4	0.078873	0.0049353
chrX	108534448	108534548	10198891	0	+	0.38	(0.36,0.392]	chrX	1015696	716	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000470339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	4.08645	4.208825	4.3312	0.00387074	1.23682e-4	0.078873	0.0049353
chr16	87849528	87849628	8619299	0	-	0.55	(0.526,0.57]	chr16	812983	80	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.1573	4.208585	5.25987	4.45312e-4	2.82947e-6	0.0146627	1.75466e-4
chr2	84990340	84990440	1082781	0	+	0.37	(0.36,0.392]	chr2	115507	177	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.75844	4.207585	4.65673	7.48315e-4	6.393e-5	0.0220209	0.00282504
chr2	98473276	98473376	1099340	0	+	0.64	(0.629,1]	chr2	117858	278	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.8359	4.2071950000000005	4.57849	2.2493e-4	1.86609e-5	0.00827964	9.4788e-4
chr15	59315326	59315426	8195198	0	-	0.45	(0.424,0.459]	chr15	759880	425	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	3.22652	4.2052	5.18388	1.43888e-4	1.21594e-5	0.00569484	6.58699e-4
chrX	80676988	80677082	10386183	0	-	0.43617	(0.424,0.459]	chrX	1030733	4	CDS	CDS:EXON_MRNA	BRWD3	ENSG00000165288.11	ENST00000373275.5	protein_coding	protein_coding	protein_coding	protein_coding	10	50	2	4.01739	4.20495	4.39251	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	180270521	180270618	813875	0	-	0.391753	(0.36,0.392]	chr1	90580	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACBD6	ENSG00000230124.8	ENST00000645415.1:ENST00000642319.1:ENST00000415414.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	3.52068	4.204745	4.88881	0.00324516	8.92448e-8	0.0730386	7.65609e-6
chr13	41611175	41611275	7501882	0	-	0.48	(0.459,0.49]	chr13	690442	2	SS5_PROX	SS5_PROX:INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.64423	4.20462	4.76501	6.20842e-4	1.46149e-4	0.0191195	0.00564049
chr15	41742145	41742245	7952992	0	+	0.49	(0.459,0.49]	chr15	735056	2	SS3_PROX	SS3_PROX:INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000564190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.64423	4.20462	4.76501	6.20842e-4	1.46149e-4	0.0191195	0.00564049
chr15	98874255	98874355	8095276	0	+	0.46	(0.459,0.49]	chr15	748514	4	SS5_PROX	SS5_PROX:INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5:ENST00000557873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.64423	4.20462	4.76501	6.20842e-4	1.46149e-4	0.0191195	0.00564049
chr19	38649559	38649658	9344590	0	+	0.464646	(0.459,0.49]	chr19	907170	9	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.64423	4.20462	4.76501	6.20842e-4	1.46149e-4	0.0191195	0.00564049
chr2	37155116	37155215	1417122	0	-	0.535354	(0.526,0.57]	chr2	147389	55	INTRON	INTRON	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000395127.6:ENST00000411537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	4.07767	4.203705	4.32974	0.00403601	1.55497e-6	0.0817225	1.02493e-4
chr1	235150230	235150329	890070	0	-	0.474747	(0.459,0.49]	chr1	99137	14	INTRON	INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.00648	4.203585	5.40069	0.0112903	1.15324e-6	0.181488	7.95154e-5
chr1	32126727	32126827	97015	0	+	0.41	(0.392,0.424]	chr1	10750	182	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	4.15239	4.203055	4.25372	0.00572894	2.90267e-5	0.105396	0.00141183
chr1	108925974	108926074	251020	0	+	0.41	(0.392,0.424]	chr1	25483	3	SS3_PROX	SS3_PROX:INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000642355.1:ENST00000645164.2:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000446797.2:ENST00000643643.1:ENST00000675740.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	4.15239	4.203055	4.25372	0.00572894	2.90267e-5	0.105396	0.00141183
chr11	74839421	74839521	6444052	0	+	0.4	(0.392,0.424]	chr11	582232	28	UTR3	UTR3:EXON_MRNA:INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5:ENST00000527301.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.15239	4.203055	4.25372	0.00572894	2.90267e-5	0.105396	0.00141183
chr17	64619917	64620017	8986347	0	-	0.4	(0.392,0.424]	chr17	866211	129	INTRON	INTRON	SMURF2	ENSG00000108854.16	ENST00000262435.14:ENST00000582081.5:ENST00000578386.5:ENST00000585301.1:ENST00000578200.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	4.15239	4.203055	4.25372	0.00572894	2.90267e-5	0.105396	0.00141183
chr2	46026297	46026397	1015251	0	+	0.4	(0.392,0.424]	chr2	109612	154	INTRON	INTRON	PRKCE	ENSG00000171132.14	ENST00000306156.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.15239	4.203055	4.25372	0.00572894	2.90267e-5	0.105396	0.00141183
chr15	71881348	71881445	8229391	0	-	0.391753	(0.36,0.392]	chr15	763683	4	INTRON	INTRON	MYO9A	ENSG00000066933.16	ENST00000356056.10:ENST00000561618.5:ENST00000564571.5:ENST00000444904.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.89308	4.202565	5.51205	0.00845227	2.39077e-6	0.140721	1.5204e-4
chr7	124864237	124864335	4839044	0	-	0.295918	[0,0.32]	chr7	433347	2	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6:ENST00000429326.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	3.36243	4.20237	5.04231	0.00121149	3.40623e-8	0.0321344	3.14246e-6
chr3	141909367	141909466	2034950	0	+	0.40404	(0.392,0.424]	chr3	203354	17	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	3.96221	4.20214	4.44207	1.96069e-4	5.58952e-6	0.00725539	3.2822e-4
chr8	17779876	17779976	5123897	0	-	0.42	(0.392,0.424]	chr8	458975	94	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	3.96221	4.20214	4.44207	1.96069e-4	5.58952e-6	0.00725539	3.2822e-4
chr10	76471980	76472080	5914037	0	+	0.35	(0.32,0.36]	chr10	530177	11	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5:ENST00000468134.1:ENST00000597823.1:ENST00000596228.5:ENST00000483375.1:ENST00000488759.5:ENST00000493194.2:ENST00000595936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	3.90902	4.201975	4.49493	5.03152e-4	1.01106e-5	0.0161742	5.51435e-4
chr3	60467113	60467213	2305952	0	-	0.28	[0,0.32]	chr3	225034	3864	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	4.06239	4.2018699999999995	4.34135	3.10398e-4	2.8746e-7	0.0109114	2.23534e-5
chr5	77061602	77061702	3223148	0	+	0.21	[0,0.32]	chr5	297795	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AGGF1	ENSG00000164252.13	ENST00000312916.12	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	4.06239	4.2018699999999995	4.34135	3.10398e-4	2.8746e-7	0.0109114	2.23534e-5
chr17	6452951	6453051	8856477	0	-	0.49	(0.459,0.49]	chr17	846738	18	UTR3	UTR3:EXON_MRNA	PITPNM3	ENSG00000091622.16	ENST00000262483.13:ENST00000421306.7	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	3.07128	4.2017299999999995	5.33218	3.09793e-5	1.78412e-6	0.0014948	1.1709e-4
chr14	70024646	70024746	7683298	0	+	0.43	(0.424,0.459]	chr14	706267	8	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	3.68374	4.20046	4.71718	9.50035e-8	3.1417e-11	8.12845e-6	4.5174e-9
chrX	44998077	44998177	10118886	0	+	0.46	(0.459,0.49]	chrX	1008827	210	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.56515	4.19893	4.83271	8.21277e-4	1.09213e-4	0.0238805	0.00442392
chr1	121295990	121296090	281018	0	+	0.49	(0.459,0.49]	chr1	28920	106	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr10	34657672	34657772	6111496	0	-	0.49	(0.459,0.49]	chr10	547481	1402	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr11	130909917	130910017	6781918	0	-	0.46	(0.459,0.49]	chr11	619181	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SNX19	ENSG00000120451.11	ENST00000265909.9:ENST00000533318.5:ENST00000528555.5:ENST00000530356.5:ENST00000524460.1:ENST00000533214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr12	38839215	38839315	7140357	0	-	0.48	(0.459,0.49]	chr12	655709	94	INTRON	INTRON	CPNE8	ENSG00000139117.14	ENST00000331366.10:ENST00000360449.3:ENST00000550863.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr12	50153428	50153528	7163106	0	-	0.48	(0.459,0.49]	chr12	659042	2	SS5_PROX	SS5_PROX:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549389.5:ENST00000550258.5:ENST00000547455.5:ENST00000546514.1:ENST00000549942.1:ENST00000550899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr12	62475774	62475874	6930781	0	+	0.49	(0.459,0.49]	chr12	634333	46	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5:ENST00000549286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr14	55284205	55284304	7626804	0	+	0.474747	(0.459,0.49]	chr14	701816	50	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr15	44549578	44549677	7963045	0	+	0.484848	(0.459,0.49]	chr15	736736	118	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr15	69348685	69348784	8023508	0	+	0.464646	(0.459,0.49]	chr15	741640	108	INTRON	INTRON	PAQR5	ENSG00000137819.14	ENST00000395407.7:ENST00000558684.5:ENST00000561153.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr16	30324103	30324202	8544887	0	-	0.484848	(0.459,0.49]	chr16	804241	178	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr17	38234607	38234707	8921549	0	-	0.46	(0.459,0.49]	chr17	855637	151	INTRON	INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr19	34185213	34185312	9326214	0	+	0.474747	(0.459,0.49]	chr19	904062	121	INTRON	INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr19	55478271	55478368	9388288	0	+	0.484536	(0.459,0.49]	chr19	916226	11	INTRON	INTRON	ZNF628	ENSG00000197483.10	ENST00000598519.2:ENST00000591164.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr2	189454140	189454237	1236470	0	+	0.463918	(0.459,0.49]	chr2	129703	19	INTRON	INTRON	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000472286.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr3	15854079	15854179	2188517	0	-	0.49	(0.459,0.49]	chr3	213984	394	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr3	33330198	33330298	1824258	0	+	0.46	(0.459,0.49]	chr3	184592	122	INTRON	INTRON	FBXL2	ENSG00000153558.16	ENST00000498807.5:ENST00000484457.6:ENST00000538892.5:ENST00000435207.5:ENST00000497411.5:ENST00000283627.10:ENST00000432809.5:ENST00000451636.5:ENST00000463736.5:ENST00000425973.5:ENST00000422741.5:ENST00000421391.5:ENST00000483037.5:ENST00000493778.5:ENST00000464164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr3	171683087	171683187	2495861	0	-	0.46	(0.459,0.49]	chr3	238903	50	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr4	56097204	56097304	2624542	0	+	0.47	(0.459,0.49]	chr4	251814	468	INTRON	INTRON	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000629263.3:ENST00000636006.1:ENST00000646253.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr4	140959045	140959145	3023544	0	-	0.47	(0.459,0.49]	chr4	282492	93	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5:ENST00000515057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr7	66551284	66551384	4724205	0	-	0.49	(0.459,0.49]	chr7	423712	52	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1:ENST00000686397.1:ENST00000690339.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr7	77801368	77801468	4442682	0	+	0.46	(0.459,0.49]	chr7	399704	20	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.81712	4.19844	4.57976	0.0120499	4.98571e-4	0.184357	0.0160179
chr1	70318362	70318461	650166	0	-	0.40404	(0.392,0.424]	chr1	72117	24	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6:ENST00000498735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	4.17862	4.198015	4.21741	0.00496616	4.01331e-5	0.0964485	0.00187621
chr2	152444174	152444274	1175993	0	+	0.42	(0.392,0.424]	chr2	124520	1081	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.17862	4.198015	4.21741	0.00496616	4.01331e-5	0.0964485	0.00187621
chr3	139392824	139392923	2020139	0	+	0.414141	(0.392,0.424]	chr3	202683	20	INTRON	INTRON	COPB2-DT	ENSG00000248932.7	ENST00000653359.1:ENST00000662234.1:ENST00000658348.1:ENST00000504670.7:ENST00000690901.1:ENST00000507362.5:ENST00000512622.1:ENST00000510068.5:ENST00000515247.5:ENST00000660194.1:ENST00000691594.1:ENST00000685603.1:ENST00000655667.1:ENST00000514729.1:ENST00000661884.1	lncRNA	lncRNA	lncRNA	lncRNA	1	10	2	4.17862	4.198015	4.21741	0.00496616	4.01331e-5	0.0964485	0.00187621
chr6	42843522	42843621	3779597	0	+	0.414141	(0.392,0.424]	chr6	346040	130	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	4.17862	4.198015	4.21741	0.00496616	4.01331e-5	0.0964485	0.00187621
chr1	37869624	37869724	574856	0	-	0.49	(0.459,0.49]	chr1	64802	3	SS5_PROX	SS5_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5:ENST00000470364.5:ENST00000474758.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr1	179908973	179909073	366215	0	+	0.48	(0.459,0.49]	chr1	39622	3	SS5_PROX	SS5_PROX:INTRON	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000531630.6:ENST00000527391.5:ENST00000474875.5:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr10	31859995	31860095	6100797	0	-	0.46	(0.459,0.49]	chr10	546790	54	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr10	34627291	34627391	6111192	0	-	0.47	(0.459,0.49]	chr10	547481	1098	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr10	74012540	74012640	5893593	0	+	0.49	(0.459,0.49]	chr10	529582	138	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr14	89392777	89392877	7888609	0	-	0.47	(0.459,0.49]	chr14	726975	416	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr15	75379043	75379141	8238059	0	-	0.489796	(0.459,0.49]	chr15	765030	28	INTRON	INTRON	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8:ENST00000570124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr16	15064344	15064437	8515379	0	-	0.483871	(0.459,0.49]	chr16	799164	7	INTRON	INTRON	RRN3	ENSG00000085721.13	ENST00000198767.11:ENST00000563559.5:ENST00000429751.6:ENST00000327307.11	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr16	71827588	71827688	8428883	0	+	0.48	(0.459,0.49]	chr16	789870	180	INTRON	INTRON	ATXN1L	ENSG00000224470.9	ENST00000683775.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr17	4840732	4840832	8634580	0	+	0.49	(0.459,0.49]	chr17	815446	67	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr17	38757276	38757374	8709848	0	+	0.469388	(0.459,0.49]	chr17	825494	9	INTRON	INTRON	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr17	61981103	61981202	8979536	0	-	0.484848	(0.459,0.49]	chr17	865059	79	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr19	38000289	38000389	9341035	0	+	0.47	(0.459,0.49]	chr19	906675	672	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr2	32363159	32363258	978854	0	+	0.484848	(0.459,0.49]	chr2	106855	53	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr6	35088908	35089008	3763292	0	+	0.49	(0.459,0.49]	chr6	343796	4	UTR3	UTR3:EXON_MRNA	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr6	108239008	108239108	4156786	0	-	0.47	(0.459,0.49]	chr6	378482	156	INTRON	INTRON	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr6	109463088	109463187	4159051	0	-	0.474747	(0.459,0.49]	chr6	378757	6	UTR3	UTR3:EXON_MRNA:INTRON	MICAL1:ZBTB24	ENSG00000135596.18:ENSG00000112365.5	ENST00000630715.2:ENST00000230122.4	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr7	74250428	74250528	4731549	0	-	0.49	(0.459,0.49]	chr7	424526	2	INTRON	INTRON	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5:ENST00000493156.6:ENST00000463194.1:ENST00000473493.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr9	28057805	28057905	5595761	0	-	0.47	(0.459,0.49]	chr9	501365	450	INTRON	INTRON	LINGO2	ENSG00000174482.10	ENST00000379992.6:ENST00000613945.3:ENST00000308675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr9	35511853	35511953	5374360	0	+	0.48	(0.459,0.49]	chr9	479952	213	INTRON	INTRON	RUSC2	ENSG00000198853.12	ENST00000361226.8	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chrX	73952236	73952335	10163907	0	+	0.464646	(0.459,0.49]	chrX	1012984	28	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	3.88247	4.19751	4.51255	0.0104144	6.3564e-4	0.170122	0.0193151
chr1	232974305	232974405	460027	0	+	0.38	(0.36,0.392]	chr1	49598	38	INTRON	INTRON	NTPCR	ENSG00000135778.12	ENST00000494689.5:ENST00000366628.10:ENST00000490807.5:ENST00000496662.5:ENST00000366627.4:ENST00000487953.1:ENST00000490098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	33	2	3.89394	4.197085	4.50023	1.38753e-9	3.96617e-11	1.61538e-7	5.62693e-9
chr15	100261378	100261478	8289346	0	-	0.44	(0.424,0.459]	chr15	769545	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADAMTS17	ENSG00000140470.15	ENST00000268070.9:ENST00000568565.2:ENST00000378898.8:ENST00000559976.1:ENST00000560486.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	33	148	2	4.0702	4.196485	4.32277	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	227023262	227023347	874222	0	-	0.317647	[0,0.32]	chr1	97412	1	CDS	CDS:EXON_MRNA	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8:ENST00000429440.5:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.83585	4.19627	4.55669	4.6269e-5	3.01397e-8	0.00212902	2.83503e-6
chrM	8818	8914	10480465	0	+	0.447917	(0.424,0.459]	chrM	1038999	3	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	28	128	2	3.94001	4.196145	4.45228	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73822135	73822234	10373428	0	-	0.484848	(0.459,0.49]	chrX	1029941	16	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	3	23	2	3.97601	4.195655	4.4153	8.98032e-7	7.08572e-7	6.37943e-5	5.07254e-5
chr12	39985236	39985336	7145625	0	-	0.35	(0.32,0.36]	chr12	656055	335	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9:ENST00000380858.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	4.06155	4.195535	4.32952	0.00388505	7.26161e-6	0.0816719	4.19717e-4
chrX	132430458	132430558	10434569	0	-	0.4	(0.392,0.424]	chrX	1034948	170	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370857.7:ENST00000370844.5:ENST00000370839.7:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	11	49	2	4.11459	4.1954650000000004	4.27634	1.38679e-10	1e-12	1.84957e-8	1.72912e-10
chr2	74387020	74387119	1496621	0	-	0.464646	(0.459,0.49]	chr2	154720	17	INTRON	INTRON	DCTN1	ENSG00000204843.13	ENST00000680606.1:ENST00000434055.5:ENST00000409240.5:ENST00000409868.5:ENST00000417090.1:ENST00000437375.1:ENST00000421392.1:ENST00000440727.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	3.40976	4.1947849999999995	4.97981	3.36273e-5	1.03329e-5	0.00159406	5.57702e-4
chr6	125987987	125988086	3872384	0	+	0.474747	(0.459,0.49]	chr6	354135	4	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000461129.5:ENST00000648977.1:ENST00000468097.5:ENST00000334379.11:ENST00000473273.1:ENST00000446681.1:ENST00000444121.5:ENST00000489934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	42	2	3.48704	4.194635	4.90223	9.59493e-9	1e-12	9.74486e-7	1.72912e-10
chr19	57822838	57822937	9395692	0	+	0.474747	(0.459,0.49]	chr19	917451	19	INTRON	INTRON	ZNF587B	ENSG00000269343.9	ENST00000651253.2:ENST00000594328.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.53295	4.19392	4.85489	2.82514e-6	3.39545e-9	1.75466e-4	3.71453e-7
chr10	113096739	113096839	5985104	0	+	0.48	(0.459,0.49]	chr10	537581	68	INTRON	INTRON	TCF7L2	ENSG00000148737.17	ENST00000355995.9:ENST00000627217.3:ENST00000534894.5:ENST00000536810.5:ENST00000538897.5:ENST00000542695.5:ENST00000543371.5:ENST00000369397.8:ENST00000355717.9:ENST00000352065.10:ENST00000369395.6:ENST00000545257.6:ENST00000629706.2:ENST00000346198.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.76446	4.191575	4.61869	1.26997e-7	1.06259e-7	1.06312e-5	8.92125e-6
chr2	236574388	236574487	1352623	0	+	0.515152	(0.49,0.526]	chr2	139338	41	INTRON	INTRON	ACKR3	ENSG00000144476.6	ENST00000447924.1:ENST00000272928.4	protein_coding	protein_coding	protein_coding	protein_coding	9	54	2	3.43974	4.19106	4.94238	4.93378e-11	1e-12	6.90276e-9	1.73382e-10
chr22	40125771	40125817	9947126	0	+	0.391304	(0.36,0.392]	chr22	989399	1	UTR5	UTR5:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	11	44	2	4.09897	4.190944999999999	4.28292	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	85796681	85796781	8614136	0	-	0.6	(0.57,0.629]	chr16	812499	73	INTRON	INTRON	EMC8	ENSG00000131148.9	ENST00000435200.2:ENST00000253457.8:ENST00000596852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.6312	4.190875	5.75055	0.00652833	6.63557e-9	0.116779	6.91177e-7
chr9	37085285	37085384	5378873	0	+	0.333333	(0.32,0.36]	chr9	480657	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	EBLN3P	ENSG00000281649.3	ENST00000664037.1:ENST00000660341.1:ENST00000662098.2:ENST00000666604.1:ENST00000653711.1:ENST00000625445.1:ENST00000658888.2:ENST00000664088.2:ENST00000664382.1:ENST00000656197.1:ENST00000653587.1:ENST00000665375.1:ENST00000692373.1:ENST00000631093.1:ENST00000685288.1:ENST00000657640.1:ENST00000629870.2:ENST00000625218.1:ENST00000627197.1:ENST00000654889.1:ENST00000656730.1:ENST00000628924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	10	2	3.6551	4.190799999999999	4.7265	6.12159e-4	2.11023e-4	0.0189985	0.00785
chr2	216498824	216498843	1310695	0	+	0.684211	(0.629,1]	chr2	134791	1	EXON_MRNA	EXON_MRNA	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1	protein_coding	retained_intron	protein_coding	retained_intron	1	20	2	3.54506	4.18854	4.83202	2.07184e-4	4.13761e-5	0.00773072	0.00192437
chr1	230648913	230649012	453882	0	+	0.373737	(0.36,0.392]	chr1	49122	55	INTRON	INTRON	COG2	ENSG00000135775.14	ENST00000366669.9:ENST00000494371.5:ENST00000468893.6:ENST00000473671.1:ENST00000366668.7:ENST00000534989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	4.11397	4.1873000000000005	4.26063	0.00451705	2.41963e-6	0.0875511	1.5318e-4
chr9	33314391	33314489	5368291	0	+	0.602041	(0.57,0.629]	chr9	479313	2	INTRON	INTRON	NFX1	ENSG00000086102.19	ENST00000379521.8:ENST00000379540.8:ENST00000318524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	3.34305	4.187195	5.03134	8.05796e-5	1.22122e-5	0.00345544	6.58806e-4
chr3	4823622	4823722	1754502	0	+	0.46	(0.459,0.49]	chr3	179787	50	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1:ENST00000648212.1:ENST00000648016.1:ENST00000648390.1:ENST00000649144.1:ENST00000649694.1:ENST00000467545.6:ENST00000650139.1:ENST00000649767.1:ENST00000650074.1:ENST00000463980.6:ENST00000493491.6:ENST00000648208.1:ENST00000649314.1:ENST00000650552.1:ENST00000648770.1:ENST00000647997.1:ENST00000649430.1:ENST00000478515.2:ENST00000649139.1:ENST00000647685.1:ENST00000649908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.68952	4.18675	5.68398	0.00206127	5.57196e-8	0.0505307	4.89622e-6
chrX	23784047	23784129	10104078	0	+	0.414634	(0.392,0.424]	chrX	1007325	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000379253.7:ENST00000379251.7:ENST00000489394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	39	2	3.84554	4.186375	4.52721	4.0409e-11	6.39933e-12	5.71066e-9	1.00653e-9
chr7	130899847	130899946	4847361	0	-	0.484848	(0.459,0.49]	chr7	434417	151	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	3	18	2	3.32488	4.186365	5.04785	2.39418e-5	1.69572e-5	0.00119556	8.71289e-4
chr1	40722807	40722907	120426	0	+	0.46	(0.459,0.49]	chr1	14056	2	SS3_PROX	SS3_PROX:INTRON	NFYC	ENSG00000066136.21	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	3.85937	4.18596	4.51255	6.3564e-4	1.54766e-4	0.0193151	0.00599593
chr13	110898855	110898955	7566800	0	-	0.48	(0.459,0.49]	chr13	696129	4	SS5_PROX	SS5_PROX:INTRON	ANKRD10:ANKRD10-IT1	ENSG00000088448.14:ENSG00000229152.2	ENST00000267339.6:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1:ENST00000494859.5:ENST00000426991.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	12	2	3.85937	4.18596	4.51255	6.3564e-4	1.54766e-4	0.0193151	0.00599593
chr17	39465008	39465108	8710642	0	+	0.47	(0.459,0.49]	chr17	825616	15	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.85937	4.18596	4.51255	6.3564e-4	1.54766e-4	0.0193151	0.00599593
chr7	157375025	157375125	4599487	0	+	0.49	(0.459,0.49]	chr7	414174	29	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.85937	4.18596	4.51255	6.3564e-4	1.54766e-4	0.0193151	0.00599593
chr8	119760098	119760187	5260977	0	-	0.303371	[0,0.32]	chr8	470009	1	SS5_PROX	SS5_PROX:INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000692711.1:ENST00000529653.2:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000519355.5:ENST00000523078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	3.00824	4.185715	5.36319	0.00225126	1.13263e-5	0.0552099	6.25152e-4
chr1	155526710	155526810	777088	0	-	0.4	(0.392,0.424]	chr1	85749	47	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	3.61326	4.185615	4.75797	5.82335e-6	2.01084e-7	3.40581e-4	1.60882e-5
chr1	21682522	21682621	539182	0	-	0.454545	(0.424,0.459]	chr1	59279	13	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	3.41142	4.18519	4.95896	2.97629e-7	1e-12	2.28522e-5	1.73382e-10
chr3	197581825	197581924	2536038	0	-	0.606061	(0.57,0.629]	chr3	243228	13	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	15	2	3.50295	4.184935	4.86692	6.5426e-4	4.28317e-5	0.0199608	0.0019752
chr1	35856096	35856195	106052	0	+	0.393939	(0.392,0.424]	chr1	12059	26	UTR3	UTR3:EXON_MRNA	AGO4	ENSG00000134698.11	ENST00000373210.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr1	151205059	151205158	297209	0	+	0.414141	(0.392,0.424]	chr1	31729	55	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr1	207784103	207784200	417837	0	+	0.402062	(0.392,0.424]	chr1	45121	9	EXON_MRNA	EXON_MRNA:INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695786.1:ENST00000490278.2:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2:ENST00000695787.1:ENST00000695788.1:ENST00000695789.1:ENST00000695790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr10	13123494	13123594	5796624	0	+	0.4	(0.392,0.424]	chr10	521848	1	SS3_PROX	SS3_PROX:INTRON	OPTN	ENSG00000123240.17	ENST00000263036.9:ENST00000378764.6:ENST00000378747.8:ENST00000378757.6:ENST00000378748.7:ENST00000378752.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr10	21687101	21687200	5812075	0	+	0.40404	(0.392,0.424]	chr10	522908	45	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr10	34129572	34129671	6106185	0	-	0.424242	(0.392,0.424]	chr10	547338	95	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr10	121521566	121521666	6274466	0	-	0.42	(0.392,0.424]	chr10	561549	10	INTRON	INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000683250.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10:ENST00000683678.1:ENST00000682400.1:ENST00000490349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr11	17144171	17144270	6576019	0	-	0.393939	(0.392,0.424]	chr11	597798	24	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000265970.11:ENST00000691414.1:ENST00000533645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr11	112008412	112008512	6494201	0	+	0.41	(0.392,0.424]	chr11	587212	119	INTRON	INTRON	DIXDC1	ENSG00000150764.14	ENST00000440460.7:ENST00000615255.1:ENST00000618522.4:ENST00000526500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr11	122272514	122272613	6764946	0	-	0.40404	(0.392,0.424]	chr11	617603	378	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1:ENST00000528381.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr12	46412256	46412356	6893101	0	+	0.4	(0.392,0.424]	chr12	628487	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr12	106885204	106885303	7012896	0	+	0.393939	(0.392,0.424]	chr12	640955	49	INTRON	INTRON	RIC8B	ENSG00000111785.21	ENST00000392839.6:ENST00000355478.6:ENST00000392837.9:ENST00000549643.5:ENST00000462949.5:ENST00000470960.1:ENST00000546449.2:ENST00000551756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr13	75806889	75806979	7397081	0	+	0.411111	(0.392,0.424]	chr13	683284	8	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000526528.1:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr14	52733605	52733704	7622729	0	+	0.393939	(0.392,0.424]	chr14	701418	15	INTRON	INTRON	STYX	ENSG00000198252.12	ENST00000354586.5:ENST00000442123.6:ENST00000556861.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr14	102787454	102787553	7761236	0	+	0.424242	(0.392,0.424]	chr14	712627	94	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr16	30331582	30331681	8544962	0	-	0.424242	(0.392,0.424]	chr16	804241	253	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr17	60651054	60651153	8759825	0	+	0.40404	(0.392,0.424]	chr17	833959	26	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000692386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr18	47887121	47887220	9218928	0	-	0.393939	(0.392,0.424]	chr18	888140	3	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000586040.5:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000586487.2:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr19	52723087	52723181	9533784	0	-	0.414894	(0.392,0.424]	chr19	942590	15	INTRON	INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5:ENST00000601447.5:ENST00000597566.5:ENST00000599798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr2	39422195	39422295	1426432	0	-	0.41	(0.392,0.424]	chr2	148450	425	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr2	189010177	189010271	1236306	0	+	0.414894	(0.392,0.424]	chr2	129664	1	CDS	CDS:EXON_MRNA	COL3A1	ENSG00000168542.16	ENST00000304636.9:ENST00000317840.9:ENST00000487010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr20	37523394	37523491	9741243	0	-	0.402062	(0.392,0.424]	chr20	964964	16	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6:ENST00000397135.1:ENST00000397131.1:ENST00000445723.5:ENST00000414080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr3	12302639	12302736	1769357	0	+	0.42268	(0.392,0.424]	chr3	181723	4	INTRON	INTRON	PPARG	ENSG00000132170.24	ENST00000397010.7:ENST00000397029.8:ENST00000309576.11:ENST00000681966.1:ENST00000397015.7:ENST00000643888.2:ENST00000643197.2:ENST00000644622.2:ENST00000455517.6:ENST00000681982.1:ENST00000652098.1:ENST00000652431.1:ENST00000652522.1:ENST00000651735.1:ENST00000397026.7:ENST00000497594.5:ENST00000682446.1:ENST00000683586.1:ENST00000684065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr3	48070583	48070683	2267940	0	-	0.42	(0.392,0.424]	chr3	219156	543	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr3	49483950	49484049	1866829	0	+	0.414141	(0.392,0.424]	chr3	189450	67	INTRON	INTRON	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000469139.1:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000421560.5:ENST00000418588.5:ENST00000431960.5:ENST00000308775.7:ENST00000435508.7:ENST00000452317.5:ENST00000452060.6:ENST00000466701.1:ENST00000673708.1:ENST00000428779.6:ENST00000461987.2:ENST00000461492.1:ENST00000430636.1:ENST00000496474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr3	73009228	73009328	1921053	0	+	0.4	(0.392,0.424]	chr3	194411	107	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr4	41454385	41454485	2611230	0	+	0.4	(0.392,0.424]	chr4	250078	3	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr5	59348762	59348862	3475732	0	-	0.41	(0.392,0.424]	chr5	319239	728	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr5	61470081	61470180	3182768	0	+	0.393939	(0.392,0.424]	chr5	293789	1368	INTRON	INTRON	ZSWIM6	ENSG00000130449.6	ENST00000252744.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr6	13389831	13389931	4004294	0	-	0.41	(0.392,0.424]	chr6	362710	238	INTRON	INTRON	GFOD1	ENSG00000145990.11	ENST00000379287.4:ENST00000379284.1:ENST00000612338.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr6	45348825	45348925	4074703	0	-	0.4	(0.392,0.424]	chr6	371463	255	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr7	21473083	21473182	4327321	0	+	0.424242	(0.392,0.424]	chr7	391144	419	INTRON	INTRON	SP4	ENSG00000105866.15	ENST00000432066.2:ENST00000448246.1:ENST00000222584.8:ENST00000649633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr7	25708914	25709013	4660624	0	-	0.424242	(0.392,0.424]	chr7	418752	457	INTRON	INTRON	ENSG00000223561	ENSG00000223561.7	ENST00000456777.6:ENST00000659634.1:ENST00000671106.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr7	110768502	110768602	4811382	0	-	0.41	(0.392,0.424]	chr7	431911	1031	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr7	112191003	112191103	4824055	0	-	0.42	(0.392,0.424]	chr7	432278	1865	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr7	128307915	128308014	4840876	0	-	0.393939	(0.392,0.424]	chr7	433503	104	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr8	131941744	131941844	5092439	0	+	0.4	(0.392,0.424]	chr8	455522	7	INTRON	INTRON	EFR3A	ENSG00000132294.15	ENST00000254624.10:ENST00000522709.5:ENST00000637848.1:ENST00000520362.5:ENST00000519656.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr9	20551366	20551466	5589922	0	-	0.42	(0.392,0.424]	chr9	501027	942	INTRON	INTRON	MLLT3	ENSG00000171843.17	ENST00000380338.9:ENST00000630269.2:ENST00000475957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr9	122872299	122872398	5723694	0	-	0.424242	(0.392,0.424]	chr9	513290	63	INTRON	INTRON	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr9	132321134	132321234	5754513	0	-	0.42	(0.392,0.424]	chr9	516416	89	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chrX	53159029	53159129	10132380	0	+	0.42	(0.392,0.424]	chrX	1010677	157	INTRON	INTRON	KANTR	ENSG00000232593.7	ENST00000603385.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chrX	81271597	81271697	10170900	0	+	0.42	(0.392,0.424]	chrX	1013468	156	INTRON	INTRON	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.15239	4.1849	4.21741	0.00572894	0.00496616	0.105396	0.0964485
chr2	201148802	201148902	1262852	0	+	0.41	(0.392,0.424]	chr2	131664	4	SS3_PROX	SS3_PROX:INTRON	CFLAR	ENSG00000003402.21	ENST00000443227.5:ENST00000309955.8:ENST00000341582.10:ENST00000342795.9:ENST00000423241.6:ENST00000439154.6:ENST00000457277.5:ENST00000462763.5:ENST00000479953.6:ENST00000474842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	15	2	2.85333	4.18457	5.51581	7.37124e-4	1.07176e-6	0.0223835	7.36955e-5
chr14	21206410	21206510	7772775	0	-	0.47	(0.459,0.49]	chr14	714912	4	SS5_PROX	SS5_PROX:INTRON	LINC00641	ENSG00000258441.1	ENST00000555688.1	lncRNA	lncRNA	lncRNA	lncRNA	2	15	2	3.13407	4.18455	5.23503	7.72738e-4	5.25256e-6	0.0225969	3.11102e-4
chr12	10718800	10718889	7084502	0	-	0.359551	(0.32,0.36]	chr12	651734	3	SS5_PROX	SS5_PROX:INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000546298.5:ENST00000536107.5:ENST00000540747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	10	2	2.97267	4.184215	5.39576	0.00701727	9.86331e-6	0.122029	5.39872e-4
chr9	77894662	77894762	5637500	0	-	0.47	(0.459,0.49]	chr9	505001	785	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	4.0059	4.18335	4.3608	2.23014e-6	3.28131e-7	1.43671e-4	2.53115e-5
chr7	87863831	87863931	4769167	0	-	0.43	(0.424,0.459]	chr7	427090	28	INTRON	INTRON	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.90943	4.18247	5.45551	0.00449434	1.50668e-6	0.0875511	9.96778e-5
chr9	4576665	4576763	5323328	0	+	0.510204	(0.49,0.526]	chr9	476451	2	CDS	CDS:EXON_MRNA	SLC1A1	ENSG00000106688.12	ENST00000262352.8:ENST00000422398.1	protein_coding	protein_coding	protein_coding	protein_coding	15	96	2	4.14345	4.18159	4.21973	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	82373756	82373834	2932219	0	-	0.717949	(0.629,1]	chr4	275772	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	3.52552	4.18149	4.83746	2.64806e-6	7.42882e-11	1.6738e-4	1.01637e-8
chr1	21767472	21767572	540071	0	-	0.5	(0.49,0.526]	chr1	59424	93	INTRON	INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.72059	4.18093	4.64127	2.73826e-4	2.4929e-4	0.00975361	0.0089494
chr9	14287586	14287686	5576416	0	-	0.5	(0.49,0.526]	chr9	500103	1069	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.72059	4.18093	4.64127	2.73826e-4	2.4929e-4	0.00975361	0.0089494
chr17	3890842	3890942	8847794	0	-	0.52	(0.49,0.526]	chr17	845057	2	INTRON	INTRON	CAMKK1	ENSG00000004660.15	ENST00000348335.7:ENST00000158166.5:ENST00000573483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	172	2	3.96608	4.180885	4.39569	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	47078409	47078509	6392624	0	+	0.4	(0.392,0.424]	chr11	572776	255	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	78	2	4.01053	4.180680000000001	4.35083	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	72262595	72262693	8232399	0	-	0.408163	(0.392,0.424]	chr15	764049	5	INTRON	INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000287196.13:ENST00000413097.6:ENST00000260376.11:ENST00000616176.4:ENST00000565443.5:ENST00000544520.5:ENST00000567974.5:ENST00000564610.5:ENST00000567440.5:ENST00000419739.7:ENST00000565999.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	3.82759	4.18039	4.53319	1.61757e-6	8.11656e-7	1.08646e-4	5.73396e-5
chr18	48545237	48545337	9116043	0	+	0.49	(0.459,0.49]	chr18	879965	45	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.31269	4.18027	5.04785	0.00308309	2.39418e-5	0.0699986	0.00119556
chr18	59352481	59352580	9238391	0	-	0.464646	(0.459,0.49]	chr18	889653	10	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.31269	4.18027	5.04785	0.00308309	2.39418e-5	0.0699986	0.00119556
chr20	7998639	7998738	9703584	0	-	0.464646	(0.459,0.49]	chr20	960319	22	INTRON	INTRON	TMX4	ENSG00000125827.9	ENST00000246024.7:ENST00000527925.1:ENST00000462384.6:ENST00000530935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	3.31269	4.18027	5.04785	0.00308309	2.39418e-5	0.0699986	0.00119556
chr4	87351587	87351687	2949171	0	-	0.46	(0.459,0.49]	chr4	277396	106	INTRON	INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.31269	4.18027	5.04785	0.00308309	2.39418e-5	0.0699986	0.00119556
chr5	37388526	37388625	3151930	0	+	0.484848	(0.459,0.49]	chr5	291378	65	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	3.31269	4.18027	5.04785	0.00308309	2.39418e-5	0.0699986	0.00119556
chr4	16234472	16234572	2579413	0	+	0.49	(0.459,0.49]	chr4	247737	69	INTRON	INTRON	TAPT1-AS1	ENSG00000263327.6	ENST00000573308.5:ENST00000573950.5:ENST00000570786.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.77994	4.17985	4.57976	4.98571e-4	2.14818e-4	0.0160179	0.00789628
chr15	47724369	47724469	7971187	0	+	0.4	(0.392,0.424]	chr15	737333	51	INTRON	INTRON	SEMA6D	ENSG00000137872.17	ENST00000558014.5:ENST00000559184.5:ENST00000560636.5:ENST00000561133.5:ENST00000561106.1:ENST00000558816.5:ENST00000536845.7:ENST00000389425.7:ENST00000316364.9:ENST00000354744.8:ENST00000358066.8:ENST00000389428.7:ENST00000355997.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	2.84278	4.179295	5.51581	0.00949728	1.07176e-6	0.16275	7.36955e-5
chr1	247139057	247139157	920478	0	-	0.43	(0.424,0.459]	chr1	101323	3	SS3_PROX	SS3_PROX:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	70	2	3.92496	4.17738	4.4298	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	67522755	67522854	8573877	0	-	0.59596	(0.57,0.629]	chr16	808075	40	INTRON	INTRON	ENSG00000276075	ENSG00000276075.2	ENST00000613438.2:ENST00000621378.2	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	3.42043	4.17734	4.93425	9.02612e-4	2.91369e-5	0.0258498	0.00141183
chr18	79145155	79145254	9156696	0	+	0.606061	(0.57,0.629]	chr18	882393	9	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.42043	4.17734	4.93425	9.02612e-4	2.91369e-5	0.0258498	0.00141183
chr3	33869309	33869408	1825767	0	+	0.333333	(0.32,0.36]	chr3	184804	29	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	3.62818	4.17734	4.7265	6.12159e-4	2.31507e-5	0.0189985	0.00117409
chr6	163539119	163539218	3975337	0	+	0.59596	(0.57,0.629]	chr6	360507	36	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	3.42043	4.17734	4.93425	9.02612e-4	2.91369e-5	0.0258498	0.00141183
chr1	92364166	92364265	232956	0	+	0.434343	(0.424,0.459]	chr1	23273	179	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr11	48104263	48104363	6396232	0	+	0.45	(0.424,0.459]	chr11	573271	576	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr12	12493255	12493355	7090068	0	-	0.45	(0.424,0.459]	chr12	652065	57	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000545864.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr14	60906132	60906232	7641348	0	+	0.45	(0.424,0.459]	chr14	703367	259	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr18	48642378	48642478	9117017	0	+	0.44	(0.424,0.459]	chr18	879989	53	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr5	79630573	79630673	3228781	0	+	0.43	(0.424,0.459]	chr5	298252	67	INTRON	INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr9	35552980	35553079	5374774	0	+	0.434343	(0.424,0.459]	chr9	479964	41	INTRON	INTRON	RUSC2	ENSG00000198853.12	ENST00000361226.8:ENST00000455600.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.64041	4.177325	4.71424	0.00115507	3.07139e-4	0.0316008	0.0105767
chr7	45040923	45041022	4385966	0	+	0.545455	(0.526,0.57]	chr7	395015	21	INTRON	INTRON	CCM2	ENSG00000136280.17	ENST00000461377.5:ENST00000544363.5:ENST00000541586.5:ENST00000478582.5:ENST00000258781.11:ENST00000488727.5:ENST00000648329.1:ENST00000478169.5:ENST00000475551.5:ENST00000381112.7:ENST00000474617.1:ENST00000480658.5:ENST00000492883.5:ENST00000482714.5:ENST00000472223.5:ENST00000476594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	3.97495	4.176825	4.3787	3.21576e-5	9.49373e-10	0.00156852	1.12027e-7
chr13	30461158	30461257	7477832	0	-	0.343434	(0.32,0.36]	chr13	688901	46	UTR3	UTR3:EXON_MRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr13	32531673	32531772	7481020	0	-	0.353535	(0.32,0.36]	chr13	689166	38	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1:ENST00000674433.1:ENST00000674408.1:ENST00000674494.1:ENST00000512755.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr18	21377418	21377518	9072562	0	+	0.33	(0.32,0.36]	chr18	876606	109	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10:ENST00000580732.6:ENST00000578368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr2	42725434	42725534	1004451	0	+	0.33	(0.32,0.36]	chr2	109002	20	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr3	105386169	105386269	1943491	0	+	0.35	(0.32,0.36]	chr3	195985	183	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr7	65755592	65755659	4397240	0	+	0.328358	(0.32,0.36]	chr7	396279	2	EXON_SMALL	EXON_SMALL:SS3_ADJ:SS3_PROX:INTRON	CCT6P1:SNORA22	ENSG00000228409.7:ENSG00000206634.1	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6:ENST00000383907.1	snoRNA	snoRNA	snoRNA:transcribed_unprocessed_pseudogene	snoRNA:processed_transcript:transcribed_unprocessed_pseudogene	1	8	2	4.02125	4.175385	4.32952	0.00388505	3.53532e-4	0.0816719	0.0122629
chr1	30948936	30949035	557715	0	-	0.424242	(0.392,0.424]	chr1	62026	31	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000529846.5:ENST00000525997.1:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	3.96221	4.17505	4.38789	1.96069e-4	4.13968e-8	0.00725539	3.74186e-6
chr15	43633131	43633230	8148308	0	-	0.414141	(0.392,0.424]	chr15	754962	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CATSPER2	ENSG00000166762.19	ENST00000396879.8:ENST00000381761.6:ENST00000321596.6:ENST00000469461.6:ENST00000433380.5:ENST00000419262.1:ENST00000472960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	3.96221	4.17505	4.38789	1.96069e-4	4.13968e-8	0.00725539	3.74186e-6
chr5	150651532	150651632	3358440	0	+	0.65	(0.629,1]	chr5	308806	13	UTR3	UTR3:EXON_MRNA:INTRON	SYNPO	ENSG00000171992.13	ENST00000394243.5:ENST00000522122.1:ENST00000307662.5:ENST00000519664.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.83714	4.17494	4.51274	8.12471e-8	9.31593e-9	7.02618e-6	9.5667e-7
chr7	104982337	104982436	4797138	0	-	0.393939	(0.392,0.424]	chr7	430967	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000687790.1:ENST00000687367.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	2	12	2	2.76656	4.17485	5.58314	0.0113141	7.33041e-7	0.181488	5.19799e-5
chr9	627593	627693	5316943	0	+	0.37	(0.36,0.392]	chr9	475869	307	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	3.54131	4.174595	4.80788	3.17078e-4	1.47653e-7	0.0111061	1.22253e-5
chr1	112961737	112961833	261410	0	+	0.354167	(0.32,0.36]	chr1	27052	7	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000428411.6:ENST00000416193.5:ENST00000664314.1:ENST00000435800.6:ENST00000420168.2:ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.31131	4.1744	5.03749	0.0111187	9.65678e-5	0.179068	0.00399919
chr1	113602536	113602636	265023	0	+	0.33	(0.32,0.36]	chr1	27241	76	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.31131	4.1744	5.03749	0.0111187	9.65678e-5	0.179068	0.00399919
chr13	113052848	113052943	7452160	0	+	0.357895	(0.32,0.36]	chr13	686185	2	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.31131	4.1744	5.03749	0.0111187	9.65678e-5	0.179068	0.00399919
chr7	77894985	77895084	4443625	0	+	0.333333	(0.32,0.36]	chr7	399727	6	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.31131	4.1744	5.03749	0.0111187	9.65678e-5	0.179068	0.00399919
chr12	49237942	49238041	6902494	0	+	0.515152	(0.49,0.526]	chr12	629046	94	INTRON	INTRON	TUBA1C	ENSG00000167553.17	ENST00000550574.1:ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.41836	4.173885	4.92941	0.00136895	4.32628e-5	0.0359623	0.00200309
chr20	63863199	63863298	9780648	0	-	0.50505	(0.49,0.526]	chr20	970009	21	EXON_LNCRNA	EXON_LNCRNA	ENSG00000268858	ENSG00000268858.2	ENST00000601296.2	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	3.41836	4.173885	4.92941	0.00136895	4.32628e-5	0.0359623	0.00200309
chr3	141887850	141887950	2034731	0	+	0.5	(0.49,0.526]	chr3	203334	99	INTRON	INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.41836	4.173885	4.92941	0.00136895	4.32628e-5	0.0359623	0.00200309
chr12	94453273	94453373	7238527	0	-	0.42	(0.392,0.424]	chr12	667399	176	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000546527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	3.81299	4.17309	4.53319	2.36886e-5	1.61757e-6	0.00119556	1.08646e-4
chr1	179207152	179207252	813238	0	-	0.31	[0,0.32]	chr1	90525	642	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	14	2	4.10414	4.172945	4.24175	6.90565e-5	5.91147e-6	0.00300464	3.45863e-4
chr1	227190189	227190289	875925	0	-	0.4	(0.392,0.424]	chr1	97575	292	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	4.09143	4.172575	4.25372	2.90267e-5	1.45195e-8	0.00141183	1.44044e-6
chr2	28924281	28924381	971928	0	+	0.46	(0.459,0.49]	chr2	106219	9	INTRON	INTRON	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	4.13232	4.17227	4.21222	1.41387e-5	9.25181e-6	7.54814e-4	5.14007e-4
chr17	7673439	7673534	8861745	0	-	0.421053	(0.392,0.424]	chr17	847801	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TP53	ENSG00000141510.18	ENST00000413465.6:ENST00000635293.1:ENST00000359597.8:ENST00000620739.4:ENST00000610292.4:ENST00000504290.5:ENST00000504937.5:ENST00000510385.5:ENST00000610623.4:ENST00000618944.4:ENST00000619186.4:ENST00000420246.6:ENST00000455263.6:ENST00000610538.4:ENST00000622645.4:ENST00000269305.9:ENST00000445888.6:ENST00000619485.4:ENST00000576024.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	3.90178	4.171925	4.44207	7.45573e-6	5.58952e-6	4.27499e-4	3.2822e-4
chr17	56897434	56897533	8968297	0	-	0.585859	(0.57,0.629]	chr17	863263	11	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	3.03059	4.171695	5.3128	7.55212e-4	9.9438e-7	0.0225125	7.00342e-5
chr5	128003890	128003988	3586087	0	-	0.428571	(0.424,0.459]	chr5	325639	15	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000665302.1:ENST00000659990.1:ENST00000606855.1:ENST00000512185.1:ENST00000665599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	10	2	3.5463	4.171665	4.79703	0.00153741	2.28148e-4	0.0389999	0.00827964
chr12	132031154	132031253	7057880	0	+	0.454545	(0.424,0.459]	chr12	647301	6	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	3.98062	4.169855	4.35909	2.41657e-6	1.2237e-8	1.5318e-4	1.23286e-6
chr4	54733130	54733192	2621671	0	+	0.33871	(0.32,0.36]	chr4	251422	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KIT	ENSG00000157404.17	ENST00000689994.1:ENST00000687295.1:ENST00000687109.1:ENST00000692783.1:ENST00000412167.7:ENST00000686011.1:ENST00000687246.1:ENST00000288135.6:ENST00000690543.1:ENST00000689832.1:ENST00000692991.1:ENST00000685269.1:ENST00000687208.1:ENST00000690917.1:ENST00000687265.1:ENST00000691361.1:ENST00000512959.1:ENST00000688704.1:ENST00000688060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	26	2	3.48153	4.169655	4.85778	6.79025e-7	1.99542e-10	4.92095e-5	2.57666e-8
chr1	174727432	174727532	355734	0	+	0.36	(0.32,0.36]	chr1	38936	218	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.90902	4.169325000000001	4.42963	0.00312289	5.03152e-4	0.0697855	0.0161742
chr4	82359939	82360039	2932078	0	-	0.35	(0.32,0.36]	chr4	275757	3	SS3_PROX	SS3_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.90902	4.169325000000001	4.42963	0.00312289	5.03152e-4	0.0697855	0.0161742
chr5	60907905	60908000	3488869	0	-	0.326316	(0.32,0.36]	chr5	319494	5	INTRON	INTRON	ERCC8	ENSG00000049167.16	ENST00000676185.1:ENST00000682217.1:ENST00000675042.2:ENST00000381118.7:ENST00000675378.1:ENST00000643034.1:ENST00000647431.2:ENST00000682375.1:ENST00000439176.6:ENST00000683052.1:ENST00000643708.1:ENST00000265038.10:ENST00000675452.2:ENST00000683460.1:ENST00000684621.1:ENST00000684453.1:ENST00000683199.1:ENST00000647486.2:ENST00000682246.1:ENST00000684394.1:ENST00000495985.5:ENST00000484330.5:ENST00000497892.6:ENST00000675229.1:ENST00000675920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.90902	4.169325000000001	4.42963	0.00312289	5.03152e-4	0.0697855	0.0161742
chr7	2332320	2332419	4611363	0	-	0.353535	(0.32,0.36]	chr7	415293	180	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000435336.5:ENST00000447136.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.90902	4.169325000000001	4.42963	0.00312289	5.03152e-4	0.0697855	0.0161742
chr12	11030870	11030961	7086641	0	-	0.384615	(0.36,0.392]	chr12	651849	5	CDS	CDS:EXON_MRNA:INTRON	PRH1:TAS2R14:TAS2R31	ENSG00000231887.8:ENSG00000212127.6:ENSG00000256436.1	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1:ENST00000390675.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	3.67918	4.16883	4.65848	8.30344e-6	8.06613e-7	4.69588e-4	5.78931e-5
chr16	85502888	85502988	8474166	0	+	0.64	(0.629,1]	chr16	792098	1436	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	10	110	2	3.92724	4.168475	4.40971	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	3025019	3025082	9409552	0	-	0.571429	(0.57,0.629]	chr19	920114	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TLE2	ENSG00000065717.15	ENST00000426948.6:ENST00000455444.6:ENST00000262953.11:ENST00000591529.5:ENST00000586422.5:ENST00000443826.7:ENST00000590536.5:ENST00000589364.5:ENST00000591457.5:ENST00000590101.5:ENST00000587137.5:ENST00000590183.5:ENST00000592584.1:ENST00000587770.5:ENST00000592305.5:ENST00000591720.1:ENST00000587893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	3.94305	4.167545	4.39204	2.55068e-7	1.09729e-9	2.02856e-5	1.29056e-7
chr17	82261027	82261126	9034213	0	-	0.484848	(0.459,0.49]	chr17	873278	51	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.00155	4.166865	5.33218	0.00201907	1.78412e-6	0.0510613	1.1709e-4
chr4	8486909	8487008	2574506	0	+	0.545455	(0.526,0.57]	chr4	247162	41	INTRON	INTRON	TRMT44:ENSG00000205959	ENSG00000155275.19:ENSG00000205959.4	ENST00000531038.5:ENST00000511366.2:ENST00000528132.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	1	13	2	3.69524	4.164555	4.63387	3.03531e-4	2.57391e-4	0.0107298	0.00911512
chr5	108964545	108964645	3269934	0	+	0.37	(0.36,0.392]	chr5	301252	48	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1:ENST00000505323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	12	2	3.10651	4.164505	5.2225	8.23373e-4	2.06042e-5	0.0238997	0.00103061
chr4	109502137	109502236	2708116	0	+	0.40404	(0.392,0.424]	chr4	257697	69	INTRON	INTRON	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.78194	4.164475	4.54701	0.00102713	7.47402e-4	0.0276375	0.0225125
chr6	133962880	133962980	3889483	0	+	0.41	(0.392,0.424]	chr6	355430	91	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.78194	4.164475	4.54701	0.00102713	7.47402e-4	0.0276375	0.0225125
chr1	227931312	227931412	877403	0	-	0.41	(0.392,0.424]	chr1	97651	54	INTRON	INTRON	WNT9A	ENSG00000143816.8	ENST00000272164.6	protein_coding	protein_coding	protein_coding	protein_coding	27	107	2	4.07245	4.16446	4.25647	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24012473	24012573	10296532	0	-	0.43	(0.424,0.459]	chrX	1024046	54	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	3.77203	4.16439	4.55675	1.30209e-8	1.17263e-9	1.30611e-6	1.37264e-7
chr1	175017127	175017226	807818	0	-	0.535354	(0.526,0.57]	chr1	90009	19	INTRON	INTRON	MRPS14	ENSG00000120333.4	ENST00000476371.1:ENST00000367677.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.48083	4.164385	4.84794	0.00110295	6.50622e-5	0.0304129	0.00284455
chr19	39357780	39357875	9346371	0	+	0.536842	(0.526,0.57]	chr19	907433	3	INTRON	INTRON	SAMD4B	ENSG00000179134.16	ENST00000610417.5:ENST00000598913.5:ENST00000314471.10:ENST00000599712.1:ENST00000594204.1:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.48083	4.164385	4.84794	0.00110295	6.50622e-5	0.0304129	0.00284455
chr6	157652924	157653024	3952366	0	+	0.57	(0.526,0.57]	chr6	358874	52	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	3.48083	4.164385	4.84794	0.00110295	6.50622e-5	0.0304129	0.00284455
chr8	47946826	47946926	5166163	0	-	0.53	(0.526,0.57]	chr8	463133	24	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.48083	4.164385	4.84794	0.00110295	6.50622e-5	0.0304129	0.00284455
chr10	97444077	97444175	6221580	0	-	0.408163	(0.392,0.424]	chr10	556637	4	EXON_MRNA	EXON_MRNA:INTRON	EXOSC1	ENSG00000171311.13	ENST00000370902.8:ENST00000370886.9:ENST00000370885.8:ENST00000485122.6:ENST00000477692.6:ENST00000370884.5:ENST00000471049.5:ENST00000472345.5:ENST00000476234.5:ENST00000489158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.47186	4.1642	4.85654	0.00366403	1.84333e-4	0.0766409	0.00688171
chr15	92990846	92990946	8087390	0	+	0.42	(0.392,0.424]	chr15	748076	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.47186	4.1642	4.85654	0.00366403	1.84333e-4	0.0766409	0.00688171
chr16	24734286	24734386	8357247	0	+	0.42	(0.392,0.424]	chr16	779110	36	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.47186	4.1642	4.85654	0.00366403	1.84333e-4	0.0766409	0.00688171
chr6	2964702	2964802	3992699	0	-	0.41	(0.392,0.424]	chr6	361701	8	INTRON	INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.47186	4.1642	4.85654	0.00366403	1.84333e-4	0.0766409	0.00688171
chr8	128088762	128088861	5090937	0	+	0.414141	(0.392,0.424]	chr8	455436	38	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1	lncRNA	lncRNA	lncRNA	lncRNA	1	9	2	3.47186	4.1642	4.85654	0.00366403	1.84333e-4	0.0766409	0.00688171
chr9	36206971	36207071	5377829	0	+	0.46	(0.459,0.49]	chr9	480610	24	INTRON	INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	3.96686	4.16383	4.3608	5.54129e-5	2.23014e-6	0.00252909	1.43671e-4
chr20	44959511	44959608	9749284	0	-	0.453608	(0.424,0.459]	chr20	965864	27	INTRON	INTRON	TOMM34	ENSG00000025772.8	ENST00000372813.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.3314	4.163675	4.99595	0.00517898	1.88138e-9	0.0992178	2.13412e-7
chr16	71680782	71680876	8585099	0	-	0.340426	(0.32,0.36]	chr16	809944	9	INTRON	INTRON	PHLPP2	ENSG00000040199.18	ENST00000568004.5:ENST00000568954.5:ENST00000393524.6:ENST00000567016.1:ENST00000538126.5:ENST00000574977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	3.94493	4.163385	4.38184	1.66191e-5	8.63412e-7	8.55383e-4	6.08224e-5
chr3	196905523	196905623	2149328	0	+	0.36	(0.32,0.36]	chr3	210781	4	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	3.94493	4.163385	4.38184	1.66191e-5	8.63412e-7	8.55383e-4	6.08224e-5
chr9	84867242	84867336	5413402	0	+	0.531915	(0.526,0.57]	chr9	483487	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NTRK2	ENSG00000148053.18	ENST00000692181.1:ENST00000686332.1:ENST00000693539.1:ENST00000686259.1:ENST00000686496.1:ENST00000687636.1:ENST00000376213.6:ENST00000376208.6:ENST00000688333.1:ENST00000687386.1:ENST00000691788.1:ENST00000686324.1:ENST00000685463.1:ENST00000690882.1:ENST00000685095.1:ENST00000686443.1:ENST00000685720.1:ENST00000323115.11:ENST00000277120.8:ENST00000304053.11:ENST00000689301.1:ENST00000692473.1:ENST00000687136.1:ENST00000688978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	49	294	2	3.9789	4.1631	4.3473	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	55174721	55174820	4391460	0	+	0.444444	(0.424,0.459]	chr7	395547	1	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	243	1043	2	4.01789	4.16278	4.30767	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	113980018	113980114	7570247	0	-	0.625	(0.57,0.629]	chr13	696655	2	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.85355	4.16091	4.46827	5.2773e-4	5.98045e-5	0.0167673	0.00266913
chr1	103555906	103556005	248480	0	+	0.424242	(0.392,0.424]	chr1	25113	4	INTRON	INTRON	AMY2B	ENSG00000240038.7	ENST00000477657.5:ENST00000361355.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.39796	4.16049	4.92302	0.00439831	1.45314e-4	0.0875511	0.00569484
chr14	68158121	68158221	7672004	0	+	0.4	(0.392,0.424]	chr14	705768	881	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.39796	4.16049	4.92302	0.00439831	1.45314e-4	0.0875511	0.00569484
chr17	31304405	31304505	8696682	0	+	0.41	(0.392,0.424]	chr17	823478	44	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.39796	4.16049	4.92302	0.00439831	1.45314e-4	0.0875511	0.00569484
chr1	66306857	66306957	191641	0	+	0.41	(0.392,0.424]	chr1	20570	395	INTRON	INTRON	PDE4B	ENSG00000184588.18	ENST00000329654.8:ENST00000341517.9:ENST00000423207.6:ENST00000412480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.7075	4.160215	4.61293	9.40427e-4	8.49057e-4	0.0266969	0.0240064
chr2	148201815	148201914	1165981	0	+	0.424242	(0.392,0.424]	chr2	123795	52	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3:ENST00000627651.2:ENST00000637830.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.7075	4.160215	4.61293	9.40427e-4	8.49057e-4	0.0266969	0.0240064
chr20	34091002	34091102	9727390	0	-	0.42	(0.392,0.424]	chr20	962985	4	SS3_PROX	SS3_PROX:INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.7075	4.160215	4.61293	9.40427e-4	8.49057e-4	0.0266969	0.0240064
chr3	47739709	47739809	2265277	0	-	0.41	(0.392,0.424]	chr3	218985	12	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000485833.1:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.7075	4.160215	4.61293	9.40427e-4	8.49057e-4	0.0266969	0.0240064
chr7	20347516	20347615	4326161	0	+	0.393939	(0.392,0.424]	chr7	391058	151	INTRON	INTRON	ITGB8	ENSG00000105855.10	ENST00000537992.5:ENST00000222573.5:ENST00000478974.1:ENST00000460204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.7075	4.160215	4.61293	9.40427e-4	8.49057e-4	0.0266969	0.0240064
chrX	53376529	53376628	10345237	0	-	0.434343	(0.424,0.459]	chrX	1027334	25	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	48	210	2	4.10993	4.1599699999999995	4.21001	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	23768110	23768210	9081398	0	+	0.3	[0,0.32]	chr18	877462	42	INTRON	INTRON	LAMA3	ENSG00000053747.17	ENST00000313654.14:ENST00000585600.5:ENST00000399516.7	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	16	2	3.67128	4.159635	4.64799	1.892e-5	2.00168e-6	9.68233e-4	1.30649e-4
chr15	63631509	63631602	8209567	0	-	0.419355	(0.392,0.424]	chr15	761082	5	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561436.1:ENST00000561359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	15	2	2.63664	4.159435	5.68223	0.00277883	1.931e-7	0.0657788	1.56398e-5
chr11	2961897	2961996	6538551	0	-	0.383838	(0.36,0.392]	chr11	593815	16	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492685.5:ENST00000528363.5:ENST00000532325.6:ENST00000448187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	12	2	3.02295	4.158935	5.29492	0.00109343	1.51392e-5	0.029258	7.85619e-4
chr1	36047147	36047247	107898	0	+	0.56	(0.526,0.57]	chr1	12279	32	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000471099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.40949	4.158754999999999	4.90802	0.00141136	4.81512e-5	0.0368074	0.00220626
chr2	239361111	239361210	1732745	0	-	0.565657	(0.526,0.57]	chr2	178005	78	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.40949	4.158754999999999	4.90802	0.00141136	4.81512e-5	0.0368074	0.00220626
chr20	7998541	7998639	9703583	0	-	0.540816	(0.526,0.57]	chr20	960319	21	INTRON	INTRON	TMX4	ENSG00000125827.9	ENST00000246024.7:ENST00000527925.1:ENST00000462384.6:ENST00000530935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	3.40949	4.158754999999999	4.90802	0.00141136	4.81512e-5	0.0368074	0.00220626
chr2	159001888	159001988	1188854	0	+	0.53	(0.526,0.57]	chr2	125123	3	INTRON	INTRON	TANC1	ENSG00000115183.15	ENST00000263635.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.62355	4.158585	4.69362	4.05302e-4	1.98837e-4	0.0135138	0.00746609
chr2	233397696	233397796	1344299	0	+	0.54	(0.526,0.57]	chr2	138961	54	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.62355	4.158585	4.69362	4.05302e-4	1.98837e-4	0.0135138	0.00746609
chr19	45768925	45769007	9513610	0	-	0.646341	(0.629,1]	chr19	938485	2	UTR5	UTR5:EXON_MRNA	SIX5	ENSG00000177045.11	ENST00000317578.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	3.21882	4.157995	5.09717	2.07391e-6	1e-12	1.35068e-4	1.72912e-10
chr17	30134126	30134226	8689031	0	+	0.47	(0.459,0.49]	chr17	822554	60	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	39	2	3.85622	4.1577	4.45918	2.91058e-8	1.0475e-12	2.73209e-6	1.80736e-10
chr11	123174220	123174320	6768939	0	-	0.4	(0.392,0.424]	chr11	617747	759	INTRON	INTRON	CLMP	ENSG00000166250.12	ENST00000448775.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.78194	4.157565	4.53319	7.47402e-4	1.61757e-6	0.0225125	1.08646e-4
chr5	69320540	69320583	3497489	0	-	0.418605	(0.392,0.424]	chr5	320096	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCDC125	ENSG00000183323.13	ENST00000396496.7:ENST00000396499.5:ENST00000460090.5:ENST00000383374.6:ENST00000511257.1:ENST00000512045.5:ENST00000513172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	3.78194	4.157565	4.53319	7.47402e-4	1.61757e-6	0.0225125	1.08646e-4
chr15	100622075	100622174	8101638	0	+	0.282828	[0,0.32]	chr15	749015	93	INTRON	INTRON	ASB7	ENSG00000183475.13	ENST00000332783.12:ENST00000558747.5:ENST00000343276.4	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.91509	4.156455	4.39782	0.00334699	3.31414e-5	0.0734189	0.00159339
chr3	10068311	10068410	1760780	0	+	0.262626	[0,0.32]	chr3	181064	6	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000470757.5:ENST00000480909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.91509	4.156455	4.39782	0.00334699	3.31414e-5	0.0734189	0.00159339
chr2	165951506	165951605	1602881	0	-	0.444444	(0.424,0.459]	chr2	166115	14	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000476227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	4.01346	4.156175	4.29889	0.00778514	1.12945e-5	0.130982	6.02727e-4
chr5	172650919	172651019	3391419	0	+	0.45	(0.424,0.459]	chr5	311146	91	INTRON	INTRON	NEURL1B	ENSG00000214357.9	ENST00000369800.6:ENST00000520919.5:ENST00000522853.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	4.01346	4.156175	4.29889	0.00778514	1.12945e-5	0.130982	6.02727e-4
chr16	2118575	2118675	8492830	0	-	0.71	(0.629,1]	chr16	795691	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.12843	4.1559349999999995	4.18344	0.00233396	0.00183228	0.0563219	0.0469284
chr2	241765509	241765609	1366064	0	+	0.66	(0.629,1]	chr2	141380	91	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	4.12843	4.1559349999999995	4.18344	0.00233396	0.00183228	0.0563219	0.0469284
chr4	127965706	127965779	2736827	0	+	0.726027	(0.629,1]	chr4	260191	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABHD18	ENSG00000164074.16	ENST00000398965.5:ENST00000473040.6:ENST00000444616.5:ENST00000645843.2:ENST00000388795.9:ENST00000513371.1:ENST00000611882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	4.12843	4.1559349999999995	4.18344	0.00233396	0.00183228	0.0563219	0.0469284
chr7	128856832	128856921	4541252	0	+	0.662921	(0.629,1]	chr7	408496	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	4.12843	4.1559349999999995	4.18344	0.00233396	0.00183228	0.0563219	0.0469284
chr6	97241778	97241878	4135784	0	-	0.29	[0,0.32]	chr6	376946	74	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	40	2	3.55573	4.15367	4.75161	4.78568e-8	1e-12	4.35511e-6	1.72912e-10
chr19	17337552	17337611	9303130	0	+	0.627119	(0.57,0.629]	chr19	900592	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000601213.5:ENST00000594345.5:ENST00000598038.5:ENST00000600995.5:ENST00000595951.1:ENST00000596941.5:ENST00000596218.5:ENST00000599429.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000596166.5:ENST00000593297.5:ENST00000601261.5:ENST00000602165.1:ENST00000596001.5:ENST00000600610.5:ENST00000594018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.20738	4.153155	5.09893	0.00279229	7.91825e-6	0.064521	4.54299e-4
chr5	166382500	166382599	3380769	0	+	0.575758	(0.57,0.629]	chr5	310328	3	EXON_PSEUDO	EXON_PSEUDO	ENSG00000229119	ENSG00000229119.3	ENST00000518938.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	43	2	3.98233	4.15313	4.32393	6.20448e-10	3.00309e-10	7.52274e-8	3.75345e-8
chr2	148102644	148102744	1164987	0	+	0.42	(0.392,0.424]	chr2	123785	307	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	3.54722	4.152595	4.75797	1.52245e-4	2.01084e-7	0.0058275	1.60882e-5
chr20	13754101	13754201	9707459	0	-	0.41	(0.392,0.424]	chr20	960646	199	INTRON	INTRON	ESF1	ENSG00000089048.15	ENST00000202816.5:ENST00000617257.2	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	3.54722	4.152595	4.75797	1.52245e-4	2.01084e-7	0.0058275	1.60882e-5
chr16	53134988	53135087	8385239	0	+	0.40404	(0.392,0.424]	chr16	783743	33	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000563410.1	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	4.11312	4.152485	4.19185	2.91357e-10	3.03463e-11	3.68102e-8	4.3995e-9
chr1	151165453	151165550	765130	0	-	0.536082	(0.526,0.57]	chr1	83264	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LYSMD1	ENSG00000163155.12	ENST00000368908.10:ENST00000440902.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.97495	4.152345	4.32974	3.21576e-5	1.55497e-6	0.00156852	1.02493e-4
chr12	93692068	93692168	6988538	0	+	0.3	[0,0.32]	chr12	638273	126	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000332896.8:ENST00000549615.5:ENST00000552983.5:ENST00000552033.5:ENST00000551065.5:ENST00000548483.5:ENST00000542893.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.98571	4.152235	4.31876	3.95466e-4	5.15904e-5	0.0132556	0.00235512
chr1	174481943	174482043	353263	0	+	0.31	[0,0.32]	chr1	38884	874	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	4.06239	4.15207	4.24175	3.10398e-4	6.90565e-5	0.0109114	0.00300464
chr12	764010	764110	6786750	0	+	0.31	[0,0.32]	chr12	619901	93	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	4.06239	4.15207	4.24175	3.10398e-4	6.90565e-5	0.0109114	0.00300464
chr21	45984335	45984402	9834172	0	+	0.656716	(0.629,1]	chr21	975571	2	CDS	CDS:EXON_MRNA	COL6A1	ENSG00000142156.16	ENST00000361866.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.15981	4.151495	5.14318	0.00188809	3.40591e-6	0.0466341	2.08838e-4
chr5	172283665	172283764	3665555	0	-	0.848485	(0.629,1]	chr5	333253	1	UTR5	UTR5:EXON_MRNA	UBTD2	ENSG00000168246.6	ENST00000393792.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.7237	4.151095	4.57849	2.2493e-4	4.75614e-5	0.00827964	0.00218277
chr4	54736497	54736553	2621706	0	+	0.464286	(0.459,0.49]	chr4	251426	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIT	ENSG00000157404.17	ENST00000689994.1:ENST00000687295.1:ENST00000687109.1:ENST00000692783.1:ENST00000412167.7:ENST00000686011.1:ENST00000687246.1:ENST00000288135.6:ENST00000690543.1:ENST00000689832.1:ENST00000692991.1:ENST00000685269.1:ENST00000687208.1:ENST00000690917.1:ENST00000687265.1:ENST00000691361.1:ENST00000688060.1:ENST00000684818.1:ENST00000692301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	158	2	3.89923	4.150555000000001	4.40188	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	31958761	31958861	8697854	0	+	0.45	(0.424,0.459]	chr17	823660	107	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.89477	4.15038	4.40599	0.00154565	2.5121e-4	0.0389999	0.00902798
chr20	34938320	34938420	9731054	0	-	0.44	(0.424,0.459]	chr20	963421	9	INTRON	INTRON	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000643502.1:ENST00000644538.1:ENST00000643443.1:ENST00000451957.2:ENST00000642538.1:ENST00000645408.1:ENST00000646497.1:ENST00000642493.1:ENST00000646502.1:ENST00000646766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.89477	4.15038	4.40599	0.00154565	2.5121e-4	0.0389999	0.00902798
chrX	18272101	18272201	10286103	0	-	0.45	(0.424,0.459]	chrX	1023101	59	INTRON	INTRON	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.89477	4.15038	4.40599	0.00154565	2.5121e-4	0.0389999	0.00902798
chr19	15395556	15395655	9449559	0	-	0.50505	(0.49,0.526]	chr19	928475	119	INTRON	INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	3.25894	4.15036	5.04178	2.88576e-4	1.57703e-5	0.010254	8.20905e-4
chr1	205120160	205120260	844196	0	-	0.44	(0.424,0.459]	chr1	93892	39	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.3314	4.149745	4.96809	0.00517898	6.10851e-5	0.0992178	0.0027377
chr1	212018022	212018122	853170	0	-	0.43	(0.424,0.459]	chr1	95026	6	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.3314	4.149745	4.96809	0.00517898	6.10851e-5	0.0992178	0.0027377
chr21	31727177	31727277	9855707	0	-	0.45	(0.424,0.459]	chr21	978079	205	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.3314	4.149745	4.96809	0.00517898	6.10851e-5	0.0992178	0.0027377
chr5	149782033	149782133	3355066	0	+	0.45	(0.424,0.459]	chr5	308313	95	INTRON	INTRON	PPARGC1B	ENSG00000155846.17	ENST00000360453.8:ENST00000394320.7:ENST00000461780.1:ENST00000309241.10:ENST00000403750.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.3314	4.149745	4.96809	0.00517898	6.10851e-5	0.0992178	0.0027377
chr21	44769178	44769278	9885728	0	-	0.57	(0.526,0.57]	chr21	980704	7	UTR3	UTR3:EXON_MRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.75687	4.1496949999999995	5.54252	0.00442955	1.66713e-7	0.0875511	1.36401e-5
chr20	49283503	49283602	9669239	0	+	0.40404	(0.392,0.424]	chr20	955630	13	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	9	38	2	3.69122	4.149005	4.60679	4.16937e-10	2.57006e-12	5.1571e-8	4.20873e-10
chr8	125099818	125099917	5085070	0	+	0.464646	(0.459,0.49]	chr8	455086	49	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000518013.5:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.88247	4.148885	4.4153	0.0104144	8.98032e-7	0.170122	6.37943e-5
chr1	55214089	55214189	630051	0	-	0.51	(0.49,0.526]	chr1	70413	356	INTRON	INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.9073	4.148525	4.38975	9.92102e-4	7.31994e-5	0.0276375	0.00316256
chr3	185399428	185399527	2127622	0	+	0.494949	(0.49,0.526]	chr3	209168	357	INTRON	INTRON	MAP3K13	ENSG00000073803.14	ENST00000446828.5:ENST00000447637.1:ENST00000424227.5:ENST00000428617.1:ENST00000443863.5:ENST00000433092.5:ENST00000265026.8:ENST00000438053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.25397	4.147875	5.04178	0.00365962	1.57703e-5	0.0766409	8.20905e-4
chr9	130754854	130754954	5515477	0	+	0.5	(0.49,0.526]	chr9	495051	400	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.25397	4.147875	5.04178	0.00365962	1.57703e-5	0.0766409	8.20905e-4
chr20	35117999	35118097	9732209	0	-	0.438776	(0.424,0.459]	chr20	963593	17	INTRON	INTRON	EDEM2	ENSG00000088298.13	ENST00000374492.8:ENST00000374491.3	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.5463	4.147815	4.74933	0.00153741	9.96009e-8	0.0389999	8.4812e-6
chr6	97183144	97183242	4135192	0	-	0.44898	(0.424,0.459]	chr6	376923	7	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.5463	4.147815	4.74933	0.00153741	9.96009e-8	0.0389999	8.4812e-6
chr17	43276055	43276155	8938222	0	-	0.53	(0.526,0.57]	chr17	859071	459	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	50	299	2	3.98536	4.146990000000001	4.30862	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	87255069	87255169	6464700	0	+	0.44	(0.424,0.459]	chr11	584125	180	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.23804	4.144715	5.05139	0.00649971	4.27641e-5	0.114061	0.00199812
chr12	79839739	79839838	7218657	0	-	0.444444	(0.424,0.459]	chr12	665867	69	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5:ENST00000548318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.23804	4.144715	5.05139	0.00649971	4.27641e-5	0.114061	0.00199812
chrX	38285833	38285930	10323235	0	-	0.556701	(0.526,0.57]	chrX	1024913	3	CDS	CDS:EXON_MRNA:INTRON	RPGR	ENSG00000156313.15	ENST00000642395.2:ENST00000339363.7:ENST00000482855.5:ENST00000644238.1:ENST00000642170.1:ENST00000642739.1:ENST00000644337.1:ENST00000645124.1:ENST00000474584.5:ENST00000646020.1:ENST00000494707.6:ENST00000645032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	60	2	4.04629	4.14447	4.24265	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	49266814	49266914	7973013	0	+	0.45	(0.424,0.459]	chr15	737558	271	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000327171.7:ENST00000396509.6:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5:ENST00000561014.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr15	59656314	59656414	8195965	0	-	0.43	(0.424,0.459]	chr15	759911	1	SS5_PROX	SS5_PROX:INTRON	GTF2A2	ENSG00000140307.11	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5:ENST00000559141.1:ENST00000559706.1:ENST00000480768.1:ENST00000472508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr17	68520261	68520361	8793119	0	+	0.43	(0.424,0.459]	chr17	836347	43	INTRON	INTRON	ENSG00000267009:PRKAR1A	ENSG00000267009.6:ENSG00000108946.16	ENST00000590353.1:ENST00000589017.6:ENST00000592800.6:ENST00000358598.6:ENST00000392711.5:ENST00000585427.6:ENST00000691392.1:ENST00000585608.5:ENST00000589228.6:ENST00000585460.1:ENST00000686019.1:ENST00000536854.6:ENST00000392710.8:ENST00000588178.6:ENST00000589480.6:ENST00000585815.5:ENST00000585981.6:ENST00000586397.5:ENST00000588188.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr2	112092083	112092183	1122976	0	+	0.45	(0.424,0.459]	chr2	120130	3	SS5_PROX	SS5_PROX:INTRON	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1:ENST00000463427.5:ENST00000471632.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr4	39961046	39961146	2878418	0	-	0.45	(0.424,0.459]	chr4	271420	325	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr8	31073191	31073291	4967145	0	+	0.45	(0.424,0.459]	chr8	444979	45	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.80014	4.14408	4.48802	0.00121831	3.54639e-4	0.0326347	0.0120332
chr8	42472566	42472654	5163026	0	-	0.454545	(0.424,0.459]	chr8	462558	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000517366.1:ENST00000522707.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	59	255	2	4.03026	4.141965	4.25367	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	48096372	48096472	6396153	0	+	0.44	(0.424,0.459]	chr11	573271	497	INTRON	INTRON	PTPRJ	ENSG00000149177.14	ENST00000418331.7:ENST00000440289.6:ENST00000527952.1:ENST00000534219.5:ENST00000526550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	3.91426	4.14196	4.36966	3.96287e-6	1.12148e-7	2.39291e-4	9.48939e-6
chr18	21056764	21056863	9187154	0	-	0.50505	(0.49,0.526]	chr18	885456	65	INTRON	INTRON	ROCK1	ENSG00000067900.8	ENST00000399799.3:ENST00000635540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.16684	4.141485	5.11613	0.00470616	1.03252e-5	0.0901733	5.57702e-4
chr8	142229372	142229472	5301848	0	-	0.5	(0.49,0.526]	chr8	473335	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.16684	4.141485	5.11613	0.00470616	1.03252e-5	0.0901733	5.57702e-4
chr1	111449581	111449681	256898	0	+	0.57	(0.526,0.57]	chr1	26584	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.87462	4.141365	5.40811	4.22914e-4	6.86579e-7	0.0140492	4.92496e-5
chr5	711703	711800	3410863	0	-	0.515464	(0.49,0.526]	chr5	313578	15	UTR3	UTR3:EXON_MRNA	ZDHHC11B	ENSG00000206077.14	ENST00000508859.8:ENST00000522356.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.81887	4.140835	4.4628	7.611e-4	1.1017e-4	0.0225125	0.00452792
chr5	37306598	37306697	3443292	0	-	0.50505	(0.49,0.526]	chr5	316838	10	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.81887	4.140835	4.4628	7.611e-4	1.1017e-4	0.0225125	0.00452792
chr3	23264356	23264456	1786379	0	+	0.34	(0.32,0.36]	chr3	183394	467	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6:ENST00000427371.3:ENST00000628311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	3.70951	4.140015	4.57052	0.00201951	2.95142e-6	0.0510613	1.84947e-4
chr17	514047	514146	8829453	0	-	0.494949	(0.49,0.526]	chr17	842532	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	101	2	3.71867	4.139985	4.5613	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	32592879	32592978	3142416	0	+	0.414141	(0.392,0.424]	chr5	290113	8	INTRON	INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	80	2	4.0469	4.139585	4.23227	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	44701542	44701639	9109197	0	+	0.505155	(0.49,0.526]	chr18	879659	2	CDS	CDS:EXON_MRNA	SETBP1	ENSG00000152217.20	ENST00000426838.8:ENST00000677068.1:ENST00000649279.2:ENST00000677699.1:ENST00000678152.1:ENST00000677077.1:ENST00000677130.1:ENST00000645568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	3.07223	4.13953	5.20683	9.76018e-4	3.9703e-6	0.0274227	2.39291e-4
chr9	127899578	127899655	5743428	0	-	0.844156	(0.629,1]	chr9	514782	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ST6GALNAC6	ENSG00000160408.16	ENST00000622357.5:ENST00000373146.6:ENST00000373144.7:ENST00000373142.5:ENST00000463086.5:ENST00000480417.5:ENST00000494541.5:ENST00000494611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.8818	4.138120000000001	4.39444	0.0064023	6.41849e-4	0.114061	0.0196462
chrX	153334215	153334285	10242179	0	+	0.871429	(0.629,1]	chrX	1020008	2	UTR5	UTR5:EXON_MRNA	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.8818	4.138120000000001	4.39444	0.0064023	6.41849e-4	0.114061	0.0196462
chr1	151071034	151071134	296429	0	+	0.73	(0.629,1]	chr1	31620	1	SS5_PROX	SS5_PROX:INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.9362	4.137595	4.33899	0.0052327	8.51164e-4	0.0992178	0.0245129
chr22	38871646	38871691	10039008	0	-	0.688889	(0.629,1]	chr22	1000892	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.9362	4.137595	4.33899	0.0052327	8.51164e-4	0.0992178	0.0245129
chr8	97644675	97644745	5035357	0	+	0.757143	(0.629,1]	chr8	451774	1	CDS	CDS:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.9362	4.137595	4.33899	0.0052327	8.51164e-4	0.0992178	0.0245129
chr8	140904952	140905052	5299473	0	-	0.31	[0,0.32]	chr8	473183	138	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	29	2	3.94806	4.137090000000001	4.32612	2.63638e-8	8.69943e-11	2.48802e-6	1.18117e-8
chr19	38627402	38627502	9344464	0	+	0.56	(0.526,0.57]	chr19	907134	9	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	4.07767	4.136495	4.19532	0.00403601	5.88525e-6	0.0817225	3.44579e-4
chr12	48058460	48058559	7156813	0	-	0.292929	[0,0.32]	chr12	657406	30	INTRON	INTRON	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	3.5909	4.135795	4.68069	2.75424e-5	5.05568e-9	0.00135919	5.38161e-7
chr15	31634381	31634481	8118405	0	-	0.56	(0.526,0.57]	chr15	751181	638	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000678495.1:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	3.40949	4.135045	4.8606	0.00141136	1.86203e-9	0.0368074	2.12626e-7
chrX	19815838	19815938	10290749	0	-	0.36	(0.32,0.36]	chrX	1023468	162	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.87259	4.13479	4.39699	3.96495e-5	8.67854e-8	0.00188516	7.51259e-6
chr17	61297630	61297730	8766230	0	+	0.53	(0.526,0.57]	chr17	834189	519	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1:ENST00000585812.5:ENST00000587294.5:ENST00000592702.5:ENST00000588569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	3.23242	4.1333649999999995	5.03431	3.23436e-4	1.64566e-5	0.0113067	8.48927e-4
chr15	59325221	59325321	8195297	0	-	0.53	(0.526,0.57]	chr15	759880	524	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.88187	4.13214	4.38241	0.00101891	8.23795e-5	0.0276375	0.00351856
chr19	38844666	38844728	9493687	0	-	0.419355	(0.392,0.424]	chr19	934637	2	INTRON	INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.15287	4.13206	5.11125	0.00224427	3.31137e-5	0.0552099	0.00159224
chr20	37503576	37503676	9741037	0	-	0.49	(0.459,0.49]	chr20	964937	38	EXON_LNCRNA	EXON_LNCRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000613961.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	32	2	3.3286	4.13203	4.93546	1.11644e-7	1.66582e-9	9.35227e-6	1.91035e-7
chr12	122087564	122087664	7038258	0	+	0.54	(0.526,0.57]	chr12	645096	79	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.22891	4.13161	5.03431	0.00393565	1.64566e-5	0.0798064	8.48927e-4
chr15	72362966	72363065	8233137	0	-	0.535354	(0.526,0.57]	chr15	764227	1	INTRON	INTRON	HEXA	ENSG00000213614.11	ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	3.22891	4.13161	5.03431	0.00393565	1.64566e-5	0.0798064	8.48927e-4
chr19	49652628	49652726	9375916	0	+	0.72449	(0.629,1]	chr19	913512	19	CDS	CDS:EXON_MRNA	SCAF1	ENSG00000126461.15	ENST00000360565.8	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.86171	4.13085	5.39999	8.48224e-4	2.69914e-7	0.0240064	2.1149e-5
chr6	108596498	108596598	3845532	0	+	0.39	(0.36,0.392]	chr6	352132	343	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.59992	4.1292	4.65848	0.00266188	8.06613e-7	0.0631592	5.78931e-5
chr5	59302298	59302398	3475267	0	-	0.26	[0,0.32]	chr5	319239	263	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	12	2	3.14971	4.12843	5.10715	2.32754e-4	7.53496e-5	0.00843063	0.00322158
chr3	129894431	129894531	1990508	0	+	0.49	(0.459,0.49]	chr3	200493	3	SS5_PROX	SS5_PROX:INTRON	TMCC1-DT	ENSG00000271270.8	ENST00000605830.6:ENST00000686063.1:ENST00000690344.1:ENST00000605698.2:ENST00000603884.5:ENST00000671446.1:ENST00000653304.1	lncRNA	lncRNA	lncRNA	lncRNA	3	22	2	3.97601	4.128375	4.28074	3.57604e-6	7.08572e-7	2.18487e-4	5.07254e-5
chr11	121030558	121030657	6514173	0	+	0.383838	(0.36,0.392]	chr11	590101	59	INTRON	INTRON	TBCEL	ENSG00000154114.13	ENST00000529397.5:ENST00000284259.11:ENST00000683345.1:ENST00000422003.6:ENST00000531148.5:ENST00000533712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.59992	4.128325	4.65673	0.00266188	7.48315e-4	0.0631592	0.0220209
chr12	43949140	43949240	6883878	0	+	0.39	(0.36,0.392]	chr12	628131	44	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.59992	4.128325	4.65673	0.00266188	7.48315e-4	0.0631592	0.0220209
chr18	35261636	35261735	9210588	0	-	0.383838	(0.36,0.392]	chr18	887048	11	UTR3	UTR3:EXON_MRNA:INTRON	ZSCAN30	ENSG00000186814.14	ENST00000610712.1:ENST00000333206.10:ENST00000420878.7:ENST00000639929.1:ENST00000589178.5	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	4.08645	4.1265350000000005	4.16662	1.23682e-4	9.16296e-5	0.0049353	0.00387303
chr17	72886175	72886275	9005351	0	-	0.49	(0.459,0.49]	chr17	868491	360	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	4.04656	4.12645	4.20634	0.00276656	3.80472e-5	0.0641652	0.00181622
chr3	8821023	8821123	2161601	0	-	0.48	(0.459,0.49]	chr3	211405	450	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	4.04656	4.12645	4.20634	0.00276656	3.80472e-5	0.0641652	0.00181622
chr7	6378914	6379014	4301275	0	+	0.47	(0.459,0.49]	chr7	389818	26	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	4.04656	4.12645	4.20634	0.00276656	3.80472e-5	0.0641652	0.00181622
chr3	13368566	13368665	2181000	0	-	0.383838	(0.36,0.392]	chr3	212942	21	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	10	2	3.28561	4.1263950000000005	4.96718	0.0015215	1.24104e-4	0.0397018	0.0049353
chr2	121631474	121631574	1556990	0	-	0.55	(0.526,0.57]	chr2	161442	249	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.15803	4.12634	5.09465	0.00482649	1.16684e-5	0.0920354	6.16746e-4
chrX	73822035	73822135	10373427	0	-	0.4	(0.392,0.424]	chrX	1029941	15	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	5	16	2	2.50222	4.12597	5.74972	0.00201399	1.25981e-7	0.0494938	1.05791e-5
chr1	213225903	213226003	429184	0	+	0.54	(0.526,0.57]	chr1	46186	491	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.80992	4.125805	4.44169	8.21639e-4	1.14789e-4	0.0238903	0.00467969
chr10	34642382	34642482	6111343	0	-	0.66	(0.629,1]	chr10	547481	1249	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.05121	4.125	5.19879	0.00356029	2.01813e-6	0.0753972	1.31579e-4
chr5	42719133	42719228	3165807	0	+	0.463158	(0.459,0.49]	chr5	292230	8	CDS	CDS:UTR3:EXON_MRNA	GHR	ENSG00000112964.14	ENST00000230882.9:ENST00000615111.4:ENST00000620156.4:ENST00000618088.4:ENST00000612382.4:ENST00000612626.4:ENST00000537449.5:ENST00000511135.5:ENST00000357703.6:ENST00000622294.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1345	6764	2	4.08985	4.12482	4.15979	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	35505011	35505111	568924	0	-	0.39	(0.36,0.392]	chr1	63938	254	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000431916.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr1	52167579	52167679	145598	0	+	0.39	(0.36,0.392]	chr1	17815	248	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr1	222947930	222948030	438391	0	+	0.39	(0.36,0.392]	chr1	47285	42	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3:ENST00000284476.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr13	72780745	72780845	7536565	0	-	0.37	(0.36,0.392]	chr13	693195	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr14	74127183	74127283	7701719	0	+	0.38	(0.36,0.392]	chr14	707883	130	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr15	75894601	75894701	8045221	0	+	0.39	(0.36,0.392]	chr15	743348	32	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr16	68039146	68039246	8412318	0	+	0.38	(0.36,0.392]	chr16	787883	6	INTRON	INTRON	DUS2	ENSG00000167264.18	ENST00000571081.6:ENST00000570709.6:ENST00000575677.5:ENST00000576994.5:ENST00000566306.5:ENST00000358896.10:ENST00000564975.5:ENST00000568099.6:ENST00000565263.6:ENST00000567100.5:ENST00000432752.5:ENST00000564781.1:ENST00000562246.2:ENST00000561965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr3	146140910	146141010	2467486	0	-	0.39	(0.36,0.392]	chr3	236606	163	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5:ENST00000480704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr4	139934165	139934265	3018963	0	-	0.37	(0.36,0.392]	chr4	282338	428	INTRON	INTRON	MAML3	ENSG00000196782.13	ENST00000509479.6:ENST00000502696.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr7	96220941	96221041	4780056	0	-	0.37	(0.36,0.392]	chr7	428121	116	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.52068	4.124445	4.72821	0.00324516	6.09158e-4	0.0730386	0.0188826
chr7	157242088	157242188	4598787	0	+	0.38	(0.36,0.392]	chr7	414074	104	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	3.67571	4.124075	4.57244	9.00428e-5	2.92322e-6	0.00381913	1.80583e-4
chr21	16228560	16228660	9787171	0	+	0.37	(0.36,0.392]	chr21	970574	46	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000653669.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000663510.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000658075.1:ENST00000669537.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1	lncRNA	lncRNA	lncRNA	lncRNA	3	15	2	3.86419	4.123975	4.38376	1.86173e-5	1.64803e-5	9.46472e-4	8.48507e-4
chr1	86365135	86365235	680593	0	-	0.32	[0,0.32]	chr1	73944	42	INTRON	INTRON	ODF2L	ENSG00000122417.16	ENST00000359242.7:ENST00000460698.7:ENST00000696297.1:ENST00000696298.1:ENST00000696299.1:ENST00000696300.1:ENST00000696301.1:ENST00000696302.1:ENST00000696309.1:ENST00000696303.1:ENST00000370566.7:ENST00000488879.7:ENST00000696304.1:ENST00000294678.6:ENST00000317336.11:ENST00000696310.1:ENST00000524695.5:ENST00000534092.5:ENST00000496592.5:ENST00000479890.5:ENST00000486557.1:ENST00000478286.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	12	2	2.59553	4.12336	5.65119	0.00557929	1.20332e-6	0.105396	8.2089e-5
chr2	71388122	71388222	1070849	0	+	0.44	(0.424,0.459]	chr2	113787	1	SS3_PROX	SS3_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	3.87401	4.121835	4.36966	3.96287e-6	5.33056e-9	2.39291e-4	5.66111e-7
chr1	156874956	156875008	311097	0	+	0.480769	(0.459,0.49]	chr1	34525	2	CDS	CDS:EXON_MRNA	NTRK1	ENSG00000198400.13	ENST00000392302.7:ENST00000674537.1:ENST00000497019.7:ENST00000530298.5:ENST00000368196.7:ENST00000524377.7:ENST00000358660.3:ENST00000534682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	146	2	4.06756	4.12177	4.17598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	18716445	18716545	8668131	0	+	0.38	(0.36,0.392]	chr17	820086	109	INTRON	INTRON	TRIM16L	ENSG00000108448.23	ENST00000572555.5:ENST00000581904.6:ENST00000449552.6:ENST00000571708.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	10	2	3.20352	4.121365	5.03921	0.0019364	9.59768e-5	0.0476694	0.00399331
chr10	28103001	28103100	6089907	0	-	0.494949	(0.49,0.526]	chr10	546082	128	INTRON	INTRON	MPP7	ENSG00000150054.19	ENST00000683449.1:ENST00000375732.5:ENST00000337532.9:ENST00000496637.6:ENST00000375719.7:ENST00000441595.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr10	34658072	34658172	6111500	0	-	0.51	(0.49,0.526]	chr10	547481	1406	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr11	12228524	12228624	6321952	0	+	0.52	(0.49,0.526]	chr11	567607	10	INTRON	INTRON	MICAL2	ENSG00000133816.18	ENST00000683283.1:ENST00000256194.8:ENST00000527546.5:ENST00000675839.1:ENST00000646065.1:ENST00000528931.5:ENST00000530691.5:ENST00000526475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr11	57670259	57670356	6397764	0	+	0.494845	(0.49,0.526]	chr11	573584	13	INTRON	INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8:ENST00000524540.1:ENST00000527090.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr11	68481887	68481987	6428703	0	+	0.52	(0.49,0.526]	chr11	579976	207	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr12	11841266	11841366	6822722	0	+	0.51	(0.49,0.526]	chr12	623837	5	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr12	124827800	124827900	7318407	0	-	0.5	(0.49,0.526]	chr12	676231	97	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr14	39371988	39372088	7609124	0	+	0.5	(0.49,0.526]	chr14	700150	207	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000341502.9	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr16	19702134	19702234	8526290	0	-	0.51	(0.49,0.526]	chr16	800885	3	UTR3	UTR3:EXON_MRNA	KNOP1	ENSG00000103550.14	ENST00000219837.12	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr17	78911511	78911611	9020303	0	-	0.5	(0.49,0.526]	chr17	871280	372	INTRON	INTRON	TIMP2	ENSG00000035862.12	ENST00000262768.11:ENST00000536189.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr18	11874403	11874498	9062450	0	+	0.494737	(0.49,0.526]	chr18	875723	1	INTRON	INTRON	GNAL	ENSG00000141404.17	ENST00000334049.11:ENST00000535121.5:ENST00000269162.9:ENST00000423027.8:ENST00000602628.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr18	39335138	39335227	9213291	0	-	0.516854	(0.49,0.526]	chr18	887446	4	EXON_PSEUDO	EXON_PSEUDO	RPL7AP66	ENSG00000175886.10	ENST00000588490.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr19	38633741	38633835	9344533	0	+	0.510638	(0.49,0.526]	chr19	907150	7	INTRON	INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000590134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr2	28021230	28021330	965214	0	+	0.5	(0.49,0.526]	chr2	105620	328	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000436924.5:ENST00000344773.6:ENST00000379624.6:ENST00000603461.1:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7:ENST00000604932.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr2	232822480	232822579	1341056	0	+	0.525253	(0.49,0.526]	chr2	138591	21	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr5	88304502	88304601	3247446	0	+	0.494949	(0.49,0.526]	chr5	299598	83	INTRON	INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000658478.1:ENST00000501869.7:ENST00000654762.1:ENST00000661627.1:ENST00000689901.1:ENST00000668471.1:ENST00000671394.1:ENST00000501715.6:ENST00000657972.2:ENST00000684909.1:ENST00000513694.2:ENST00000510087.6:ENST00000657617.1:ENST00000686930.1:ENST00000653183.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr5	128353990	128354090	3587913	0	-	0.52	(0.49,0.526]	chr5	325918	26	INTRON	INTRON	FBN2	ENSG00000138829.12	ENST00000262464.9:ENST00000508053.5:ENST00000508989.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr6	99427942	99428041	3836389	0	+	0.494949	(0.49,0.526]	chr6	351647	14	INTRON	INTRON	ENSG00000228506	ENSG00000228506.3	ENST00000418945.3:ENST00000687719.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr7	66788129	66788229	4402925	0	+	0.52	(0.49,0.526]	chr7	396692	39	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000439720.3:ENST00000484547.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr7	128527989	128528088	4841503	0	-	0.50505	(0.49,0.526]	chr7	433695	41	EXON_LNCRNA	EXON_LNCRNA	ENSG00000273270	ENSG00000273270.1	ENST00000608477.1	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr7	129241434	129241534	4542222	0	+	0.52	(0.49,0.526]	chr7	408714	156	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr7	157140237	157140337	4597744	0	+	0.5	(0.49,0.526]	chr7	413969	5	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr8	26385388	26385487	4952795	0	+	0.515152	(0.49,0.526]	chr8	443750	15	INTRON	INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000520077.5:ENST00000523949.5:ENST00000523515.5:ENST00000520409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr8	38457446	38457534	5160131	0	-	0.511364	(0.49,0.526]	chr8	462216	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6:ENST00000440174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chrX	77772562	77772662	10385021	0	-	0.5	(0.49,0.526]	chrX	1030575	550	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.08493	4.121035	4.15714	0.00395081	0.00319561	0.0816719	0.0699484
chr13	75814865	75814965	7397164	0	+	0.58	(0.57,0.629]	chr13	683296	53	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.80669	4.121	5.43531	9.15468e-5	2.83977e-7	0.00387303	2.21461e-5
chr1	86355714	86355782	680490	0	-	0.382353	(0.36,0.392]	chr1	73919	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ODF2L	ENSG00000122417.16	ENST00000359242.7:ENST00000460698.7:ENST00000696297.1:ENST00000696298.1:ENST00000696299.1:ENST00000696300.1:ENST00000696301.1:ENST00000696302.1:ENST00000696309.1:ENST00000696303.1:ENST00000370566.7:ENST00000488879.7:ENST00000462648.6:ENST00000696304.1:ENST00000294678.6:ENST00000317336.11:ENST00000531412.5:ENST00000696310.1:ENST00000476054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	27	2	3.80177	4.120585	4.4394	2.8726e-8	6.65583e-9	2.70069e-6	6.99012e-7
chr2	182287108	182287208	1635092	0	-	0.36	(0.32,0.36]	chr2	168577	223	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	95	2	3.73362	4.12028	4.50694	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	91959218	91959282	5935776	0	+	0.390625	(0.36,0.392]	chr10	532412	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12:ENST00000471217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	42	140	2	3.65322	4.11909	4.58496	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	74739805	74739893	4431619	0	+	0.386364	(0.36,0.392]	chr7	398350	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000620631.4:ENST00000621640.1:ENST00000462915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	22	2	4.11397	4.11572	4.11747	2.41963e-6	2.49186e-8	1.5318e-4	2.3576e-6
chr11	65425069	65425169	6415891	0	+	0.34	(0.32,0.36]	chr11	577189	24	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	60	192	2	3.68638	4.115665	4.54495	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	202800489	202800589	838916	0	-	0.48	(0.459,0.49]	chr1	93017	230	INTRON	INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1:ENST00000470573.5:ENST00000467487.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.71812	4.115335	4.51255	6.3564e-4	1.07121e-5	0.0193151	5.77005e-4
chr21	45224561	45224659	9829837	0	+	0.72449	(0.629,1]	chr21	975146	25	UTR3	UTR3:EXON_MRNA:INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	3.39846	4.11524	4.83202	5.39652e-4	4.13761e-5	0.0171646	0.00192437
chr9	127723230	127723329	5742234	0	-	0.616162	(0.57,0.629]	chr9	514488	59	INTRON	INTRON	PTRH1	ENSG00000187024.15	ENST00000419060.5:ENST00000429848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	66	2	3.82114	4.11478	4.40842	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	100455512	100455611	7752720	0	+	0.30303	[0,0.32]	chr14	711686	1	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000557710.5:ENST00000542471.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.36243	4.113815	4.8652	0.00121149	4.11137e-4	0.0321344	0.0138446
chr2	24299995	24300083	1397451	0	-	0.409091	(0.392,0.424]	chr2	144947	2	CDS	CDS:EXON_MRNA	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5	protein_coding	protein_coding	protein_coding	protein_coding	43	158	2	3.79151	4.113075	4.43464	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	198157776	198157875	389595	0	+	0.525253	(0.49,0.526]	chr1	41964	1	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	3.42652	4.111695	4.79687	4.92443e-10	1e-12	6.02111e-8	1.72912e-10
chrX	135339070	135339170	10445834	0	-	0.53	(0.526,0.57]	chrX	1035305	427	INTRON	INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	42	2	4.08256	4.111644999999999	4.14073	4.03572e-10	7.65175e-11	5.02379e-8	1.04291e-8
chr20	35546722	35546816	9637136	0	+	0.351064	(0.32,0.36]	chr20	951573	15	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	20	2	3.22222	4.11143	5.00064	1.32512e-5	4.42887e-8	7.11541e-4	3.9809e-6
chr2	11213098	11213192	1380599	0	-	0.340426	(0.32,0.36]	chr2	143080	9	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.94516	4.1113	4.27744	6.03386e-5	1.2683e-5	0.00268144	6.82846e-4
chr15	85101692	85101791	8069551	0	+	0.454545	(0.424,0.459]	chr15	745930	11	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	68	2	3.42034	4.111005	4.80167	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	13667	13762	10480512	0	+	0.484211	(0.459,0.49]	chrM	1039009	15	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	23	121	2	3.97222	4.110580000000001	4.24894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	20490788	20490887	8105439	0	-	0.292929	[0,0.32]	chr15	749546	69	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	21	66	2	3.9155	4.109185	4.30287	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	140698568	140698668	4571299	0	+	0.59	(0.57,0.629]	chr7	410753	3	SS5_PROX	SS5_PROX:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	3.03884	4.10888	5.17892	0.00676458	3.48382e-6	0.1204	2.13641e-4
chr15	25065025	25065110	7927899	0	+	0.4	(0.392,0.424]	chr15	731700	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000551077.2:ENST00000658769.1:ENST00000667925.1:ENST00000653407.1	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	3.96221	4.107965	4.25372	1.96069e-4	2.90267e-5	0.00725539	0.00141183
chr12	104296676	104296775	7002901	0	+	0.434343	(0.424,0.459]	chr12	640186	52	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.16328	4.107335	5.05139	0.0011776	4.27641e-5	0.0313499	0.00199812
chr6	97227295	97227395	4135635	0	-	0.43	(0.424,0.459]	chr6	376929	403	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.16328	4.107335	5.05139	0.0011776	4.27641e-5	0.0313499	0.00199812
chr7	131391969	131392069	4549690	0	+	0.43	(0.424,0.459]	chr7	409236	26	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	3.16328	4.107335	5.05139	0.0011776	4.27641e-5	0.0313499	0.00199812
chr1	155666255	155666353	777528	0	-	0.530612	(0.526,0.57]	chr1	85765	45	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr10	21947333	21947433	6080007	0	-	0.56	(0.526,0.57]	chr10	545087	178	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr10	87142455	87142555	5925208	0	+	0.53	(0.526,0.57]	chr10	531085	451	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr11	68352500	68352599	6427494	0	+	0.535354	(0.526,0.57]	chr11	579828	39	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr12	57338520	57338620	7181303	0	-	0.53	(0.526,0.57]	chr12	663014	277	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000403821.6:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr12	68918980	68919080	7198554	0	-	0.54	(0.526,0.57]	chr12	664470	327	INTRON	INTRON	CPM	ENSG00000135678.12	ENST00000551568.6:ENST00000338356.7:ENST00000546373.5:ENST00000548954.5:ENST00000551728.5:ENST00000547134.5:ENST00000547924.1:ENST00000548262.5:ENST00000549781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr12	110402826	110402926	7277062	0	-	0.55	(0.526,0.57]	chr12	670649	60	INTRON	INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000450008.3:ENST00000552170.2:ENST00000464697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr14	34453897	34453997	7801912	0	-	0.56	(0.526,0.57]	chr14	718161	182	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr15	56122824	56122924	8182813	0	-	0.54	(0.526,0.57]	chr15	759035	188	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr15	78049723	78049822	8254275	0	-	0.545455	(0.526,0.57]	chr15	766029	43	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7:ENST00000435468.1:ENST00000482562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr17	1433725	1433824	8836844	0	-	0.555556	(0.526,0.57]	chr17	843223	97	INTRON	INTRON	CRK	ENSG00000167193.8	ENST00000398970.5:ENST00000300574.3:ENST00000574295.1:ENST00000572145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr17	43080471	43080567	8936675	0	-	0.541667	(0.526,0.57]	chr17	858890	7	INTRON	INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000644379.1:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5:ENST00000487825.5:ENST00000621897.1:ENST00000461574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr18	48609237	48609337	9116683	0	+	0.55	(0.526,0.57]	chr18	879965	685	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr20	2749909	2749973	9553872	0	+	0.5625	(0.526,0.57]	chr20	945883	2	CDS	CDS:EXON_MRNA	EBF4	ENSG00000088881.21	ENST00000380648.9:ENST00000449079.7:ENST00000609451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr22	31635377	31635477	10015804	0	-	0.54	(0.526,0.57]	chr22	998172	27	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000437808.5:ENST00000435900.5:ENST00000474017.5:ENST00000491342.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr3	49495765	49495865	1866952	0	+	0.55	(0.526,0.57]	chr3	189469	24	INTRON	INTRON	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000469139.1:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000421560.5:ENST00000418588.5:ENST00000431960.5:ENST00000308775.7:ENST00000435508.7:ENST00000452317.5:ENST00000452060.6:ENST00000466701.1:ENST00000673708.1:ENST00000428779.6:ENST00000461492.1:ENST00000430636.1:ENST00000496474.1:ENST00000475424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr6	36147628	36147728	4047861	0	-	0.56	(0.526,0.57]	chr6	368967	3	INTRON	INTRON	BRPF3-AS1	ENSG00000246982.7	ENST00000526611.5	lncRNA	lncRNA	lncRNA	lncRNA	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr7	44398060	44398160	4710035	0	-	0.57	(0.526,0.57]	chr7	421962	52	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000338427.10:ENST00000493613.5:ENST00000472246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr7	74485425	74485524	4429495	0	+	0.555556	(0.526,0.57]	chr7	398064	309	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr8	38424507	38424603	5159789	0	-	0.552083	(0.526,0.57]	chr8	462173	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000526570.5:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000674217.1:ENST00000674235.1:ENST00000475621.1:ENST00000530701.1:ENST00000464163.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000682770.1:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	4.07767	4.106965000000001	4.13626	0.00403601	0.00339748	0.0817225	0.0728314
chr3	185608648	185608746	2128813	0	+	0.428571	(0.424,0.459]	chr3	209299	18	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000473760.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	62	2	3.52643	4.10552	4.68461	1.43893e-10	1e-12	1.90548e-8	1.72912e-10
chr10	126905517	126905563	6013252	0	+	0.673913	(0.629,1]	chr10	539957	1	CDS_START	CDS_START:CDS:EXON_MRNA	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.46913	4.10541	4.74169	3.04018e-4	7.88558e-5	0.0105767	0.00339056
chr12	101715669	101715762	6999444	0	+	0.27957	[0,0.32]	chr12	639748	2	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.6742	4.10529	4.53638	0.00220802	8.41855e-6	0.053911	4.71048e-4
chr10	62091649	62091747	5869503	0	+	0.55102	(0.526,0.57]	chr10	526586	9	CDS	CDS:EXON_MRNA	ARID5B	ENSG00000150347.17	ENST00000681100.1:ENST00000279873.12:ENST00000309334.5	protein_coding	protein_coding	protein_coding	protein_coding	21	123	2	3.80776	4.1049500000000005	4.40214	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	26024014	26024114	6848624	0	+	0.29	[0,0.32]	chr12	625667	21	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5:ENST00000542004.5:ENST00000542315.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.75039	4.104755	4.45912	0.00182075	1.18389e-5	0.0469284	6.49715e-4
chr1	220645962	220646062	435169	0	+	0.47	(0.459,0.49]	chr1	46775	84	INTRON	INTRON	MARK1	ENSG00000116141.17	ENST00000366917.6:ENST00000402574.5:ENST00000611084.4:ENST00000366918.8:ENST00000677505.1:ENST00000677041.1:ENST00000678435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	46	2	3.1309	4.10422	5.07754	2.81721e-8	1e-12	2.65279e-6	1.72912e-10
chr9	123556669	123556769	5727678	0	-	0.61	(0.57,0.629]	chr9	513607	948	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.95732	4.102015	5.24671	0.00848479	2.15311e-6	0.140721	1.3963e-4
chr3	100712846	100712945	1941029	0	+	0.434343	(0.424,0.459]	chr3	195662	14	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	33	2	3.30899	4.10152	4.89405	6.38655e-7	2.62712e-12	4.64531e-5	4.29562e-10
chr2	87627977	87628072	1091967	0	+	0.610526	(0.57,0.629]	chr2	116671	6	INTRON	INTRON	CYTOR	ENSG00000222041.12	ENST00000642796.1:ENST00000646636.1:ENST00000646578.1:ENST00000644938.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	3.91804	4.10113	4.28422	0.00145677	2.83782e-5	0.0382827	0.0013972
chr1	228348296	228348395	450235	0	+	0.616162	(0.57,0.629]	chr1	48716	57	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000664957.1:ENST00000664561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr20	54208086	54208100	9677838	0	+	0.571429	(0.57,0.629]	chr20	955979	1	UTR5	UTR5:EXON_MRNA	PFDN4	ENSG00000101132.10	ENST00000371419.7:ENST00000441080.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr20	63965216	63965300	9780946	0	-	0.607143	(0.57,0.629]	chr20	970128	1	INTRON	INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr22	30245711	30245804	10011766	0	-	0.602151	(0.57,0.629]	chr22	997290	4	INTRON	INTRON	LIF	ENSG00000128342.5	ENST00000249075.4:ENST00000403987.3	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr4	6795929	6796029	2565097	0	+	0.58	(0.57,0.629]	chr4	246510	127	INTRON	INTRON	KIAA0232	ENSG00000170871.12	ENST00000503278.1:ENST00000508423.1:ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr7	128848887	128848982	4541153	0	+	0.589474	(0.57,0.629]	chr7	408434	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr9	137635507	137635606	5530225	0	+	0.575758	(0.57,0.629]	chr9	498144	151	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000637593.1:ENST00000629335.2:ENST00000637335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	9	2	3.91553	4.099875	4.28422	0.00651627	0.00145677	0.114061	0.0382827
chr10	6222919	6222984	5780877	0	+	0.615385	(0.57,0.629]	chr10	521019	2	CDS	CDS:EXON_MRNA	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000379785.5:ENST00000490474.5:ENST00000477914.5:ENST00000467491.5:ENST00000461744.5:ENST00000317350.8:ENST00000626882.2:ENST00000625260.2:ENST00000360521.7:ENST00000640683.1:ENST00000379775.9:ENST00000450232.1:ENST00000487989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr10	11952549	11952649	6048283	0	-	0.61	(0.57,0.629]	chr10	542971	3	SS3_PROX	SS3_PROX:INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr15	45154814	45154914	8150249	0	-	0.61	(0.57,0.629]	chr15	755404	12	INTRON	INTRON	ENSG00000259539	ENSG00000259539.1	ENST00000558039.1	lncRNA	lncRNA	lncRNA	lncRNA	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr15	74922859	74922955	8237593	0	-	0.614583	(0.57,0.629]	chr15	764887	21	INTRON	INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr15	99986475	99986575	8286577	0	-	0.58	(0.57,0.629]	chr15	769444	99	INTRON	INTRON	ADAMTS17	ENSG00000140470.15	ENST00000268070.9:ENST00000568565.2	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr16	673933	674002	8296594	0	+	0.608696	(0.57,0.629]	chr16	770858	1	CDS	CDS:UTR3:EXON_MRNA	RHOT2	ENSG00000140983.14	ENST00000315082.9:ENST00000569675.5:ENST00000568636.5:ENST00000564659.1:ENST00000569197.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr16	75682410	75682510	8434412	0	+	0.61	(0.57,0.629]	chr16	790505	251	INTRON	INTRON	TERF2IP	ENSG00000166848.7	ENST00000653858.1:ENST00000564671.2:ENST00000659145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr17	80667084	80667184	8815559	0	+	0.59	(0.57,0.629]	chr17	840397	229	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr3	42660328	42660421	1849973	0	+	0.623656	(0.57,0.629]	chr3	187290	1	INTRON	INTRON	ZBTB47	ENSG00000114853.15	ENST00000232974.11:ENST00000680014.1:ENST00000505904.1	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr4	153175477	153175577	2763344	0	+	0.58	(0.57,0.629]	chr4	262277	184	INTRON	INTRON	TRIM2	ENSG00000109654.16	ENST00000676423.1:ENST00000675745.1:ENST00000676348.1:ENST00000676408.1:ENST00000674874.1:ENST00000675315.1:ENST00000676458.1:ENST00000675782.1:ENST00000437508.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr5	180552490	180552589	3408563	0	+	0.585859	(0.57,0.629]	chr5	313229	20	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chr9	137039539	137039616	5769158	0	-	0.61039	(0.57,0.629]	chr9	519092	2	UTR3	UTR3:EXON_MRNA	NPDC1	ENSG00000107281.10	ENST00000371601.5:ENST00000371600.7	protein_coding	protein_coding	protein_coding	protein_coding	0	9	2	3.98068	4.099445	4.21821	0.0053729	0.00185391	0.100211	0.0459841
chrX	81276983	81277076	10170954	0	+	0.354839	(0.32,0.36]	chrX	1013471	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	40	2	3.70201	4.099195	4.49638	9.32987e-11	1e-12	1.26183e-8	1.72912e-10
chr1	168023685	168023776	332066	0	+	0.373626	(0.36,0.392]	chr1	37189	8	UTR3	UTR3:EXON_MRNA:INTRON	DCAF6	ENSG00000143164.16	ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.54131	4.099019999999999	4.65673	7.48315e-4	3.17078e-4	0.0220209	0.0111061
chr4	20743305	20743405	2585039	0	+	0.43	(0.424,0.459]	chr4	248192	109	INTRON	INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000506702.5:ENST00000507634.5:ENST00000467997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	3.73279	4.098975	4.46516	1.78903e-5	2.35249e-6	9.13813e-4	1.51159e-4
chr2	196786862	196786959	1658751	0	-	0.360825	(0.36,0.392]	chr2	170436	9	INTRON	INTRON	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000409364.3:ENST00000470386.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	10	2	2.97461	4.098555	5.2225	0.00698532	2.06042e-5	0.123839	0.00103061
chr17	75101316	75101413	8799200	0	+	0.474227	(0.459,0.49]	chr17	837218	1	INTRON	INTRON	SLC16A5	ENSG00000170190.16	ENST00000580123.5:ENST00000329783.9:ENST00000578376.5:ENST00000450736.6:ENST00000538213.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.21669	4.09825	4.97981	5.63284e-4	3.36273e-5	0.0178211	0.00159406
chr3	119872902	119873001	2400351	0	-	0.333333	(0.32,0.36]	chr3	230011	25	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000678013.1:ENST00000676910.1:ENST00000679201.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678121.1:ENST00000678181.1:ENST00000678561.1:ENST00000676887.1:ENST00000676948.1:ENST00000678064.1:ENST00000677046.1:ENST00000676844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	18	2	3.3435	4.09722	4.85094	2.33974e-5	2.73185e-7	0.00116109	2.11622e-5
chr5	37154782	37154879	3442079	0	-	0.402062	(0.392,0.424]	chr5	316558	4	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000509849.5:ENST00000514429.5:ENST00000510830.2:ENST00000509957.5:ENST00000511210.5:ENST00000515380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	3.82759	4.09718	4.36677	8.10105e-6	8.11656e-7	4.57465e-4	5.73396e-5
chr3	123935753	123935853	2415279	0	-	0.41	(0.392,0.424]	chr3	231536	16	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5:ENST00000485949.5:ENST00000471054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	3.37639	4.096985	4.81758	7.3655e-5	6.29448e-8	0.00317841	5.585e-6
chr7	100363590	100363689	4490960	0	+	0.373737	(0.36,0.392]	chr7	404134	37	INTRON	INTRON	PILRB	ENSG00000121716.21	ENST00000452089.5:ENST00000448382.5:ENST00000609309.3	protein_coding	protein_coding	protein_coding	protein_coding	12	41	2	3.14157	4.096875	5.05218	7.28793e-8	1e-12	6.33147e-6	1.73382e-10
chr19	44850205	44850305	9358667	0	+	0.53	(0.526,0.57]	chr19	910400	32	INTRON	INTRON	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10	protein_coding	protein_coding	protein_coding	protein_coding	10	64	2	3.96692	4.096215	4.22551	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	80093815	80093915	8051351	0	+	0.43	(0.424,0.459]	chr15	744185	181	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	3.47733	4.095785	4.71424	3.07139e-4	2.01844e-4	0.0105767	0.00755335
chr2	189713136	189713235	1237212	0	+	0.434343	(0.424,0.459]	chr2	129889	16	INTRON	INTRON	ANKAR	ENSG00000151687.15	ENST00000441800.5:ENST00000684021.1:ENST00000433782.6:ENST00000520309.5:ENST00000313581.4:ENST00000464687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	3.0068	4.09534	5.18388	0.00341471	1.21594e-5	0.0729529	6.58699e-4
chr16	69324493	69324589	8577775	0	-	0.552083	(0.526,0.57]	chr16	808758	4	INTRON	INTRON	COG8	ENSG00000213380.16	ENST00000564419.1:ENST00000562595.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	3.93247	4.094885	4.2573	2.46218e-6	5.11261e-9	1.55994e-4	5.43682e-7
chr10	43173163	43173263	5841187	0	+	0.42	(0.392,0.424]	chr10	524981	57	INTRON	INTRON	CSGALNACT2	ENSG00000169826.8	ENST00000374466.4	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	4.03703	4.094709999999999	4.15239	0.00572894	1.48653e-4	0.105396	0.00578975
chr11	10071102	10071202	6560206	0	-	0.41	(0.392,0.424]	chr11	596538	266	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	4.03703	4.094709999999999	4.15239	0.00572894	1.48653e-4	0.105396	0.00578975
chr17	44485673	44485773	8942850	0	-	0.4	(0.392,0.424]	chr17	860008	104	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1:ENST00000588554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	4.03703	4.094709999999999	4.15239	0.00572894	1.48653e-4	0.105396	0.00578975
chr8	89744635	89744735	5212907	0	-	0.41	(0.392,0.424]	chr8	466517	186	INTRON	INTRON	RIPK2-DT	ENSG00000251136.10	ENST00000688654.1:ENST00000690564.1:ENST00000661105.1:ENST00000685145.1:ENST00000519655.6:ENST00000656898.2:ENST00000685787.1:ENST00000693018.1:ENST00000691313.1:ENST00000691446.1:ENST00000524190.2:ENST00000691897.1:ENST00000685988.1:ENST00000691595.1:ENST00000688855.1:ENST00000504145.6:ENST00000685619.1:ENST00000653574.1:ENST00000687824.1:ENST00000521996.2:ENST00000692782.1:ENST00000655144.2:ENST00000687204.1:ENST00000689241.1:ENST00000686009.1:ENST00000685448.1	lncRNA	lncRNA	lncRNA	lncRNA	1	9	2	4.03703	4.094709999999999	4.15239	0.00572894	1.48653e-4	0.105396	0.00578975
chr6	17850757	17850857	4014477	0	-	0.51	(0.49,0.526]	chr6	363371	3	SS3_PROX	SS3_PROX:INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	3.86452	4.0943700000000005	4.32422	9.70116e-9	2.73466e-9	9.84701e-7	3.02192e-7
chr14	58521589	58521684	7635723	0	+	0.442105	(0.424,0.459]	chr14	702918	8	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	KIAA0586:HNRNPCP1	ENSG00000100578.18:ENSG00000258900.1	ENST00000354386.10:ENST00000619416.4:ENST00000619722.5:ENST00000423743.7:ENST00000650904.1:ENST00000652326.2:ENST00000650845.1:ENST00000651937.1:ENST00000261244.9:ENST00000538571.6:ENST00000651759.1:ENST00000651852.1:ENST00000555397.1:ENST00000556181.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	6	26	2	3.41142	4.094165	4.77691	2.97629e-7	4.08028e-8	2.28522e-5	3.72797e-6
chr8	80138161	80138261	5201285	0	-	0.58	(0.57,0.629]	chr8	465850	179	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	3.28948	4.093735000000001	4.89799	0.00212278	1.95563e-10	0.0532704	2.54562e-8
chr11	78223411	78223499	6662737	0	-	0.579545	(0.57,0.629]	chr11	611083	1	CDS	CDS:EXON_MRNA	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000340149.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	4.05192	4.09365	4.13538	8.80882e-6	5.27543e-6	4.93044e-4	3.12112e-4
chr4	6981479	6981579	2566716	0	+	0.38	(0.36,0.392]	chr4	246598	137	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.45885	4.0935299999999994	4.72821	6.09158e-4	4.24507e-4	0.0188826	0.0140677
chr15	59216600	59216699	8194199	0	-	0.353535	(0.32,0.36]	chr15	759817	15	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559269.5:ENST00000559489.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.90902	4.09323	4.27744	5.03152e-4	6.03386e-5	0.0161742	0.00268144
chr11	111757823	111757922	6742371	0	-	0.323232	(0.32,0.36]	chr11	614939	20	INTRON	INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	4.02125	4.092980000000001	4.16471	3.53532e-4	9.22891e-5	0.0122629	0.00388567
chr9	123042516	123042616	5483723	0	+	0.31	[0,0.32]	chr9	490121	84	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	29	2	3.18619	4.09271	4.99923	2.91374e-7	2.26164e-11	2.2646e-5	3.31105e-9
chr12	20618643	20618741	6844556	0	+	0.346939	(0.32,0.36]	chr12	625065	19	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	29	2	4.08601	4.092420000000001	4.09883	6.8509e-8	9.11927e-11	6.01606e-6	1.23349e-8
chr6	3264522	3264621	3689953	0	+	0.616162	(0.57,0.629]	chr6	336329	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PSMG4	ENSG00000180822.12	ENST00000509933.1:ENST00000380306.8:ENST00000380305.4:ENST00000438998.7:ENST00000419065.6:ENST00000473000.2:ENST00000324987.4:ENST00000451246.2:ENST00000454610.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.50295	4.092135	4.68132	6.5426e-4	1.50304e-4	0.0199608	0.00577248
chr5	16838047	16838147	3427872	0	-	0.43	(0.424,0.459]	chr5	315267	195	INTRON	INTRON	MYO10	ENSG00000145555.15	ENST00000513610.6:ENST00000274203.13:ENST00000513882.5:ENST00000502436.5:ENST00000507288.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	3.98062	4.092115	4.20361	1.79381e-5	2.41657e-6	9.13813e-4	1.5318e-4
chr7	74569953	74570053	4430362	0	+	0.6	(0.57,0.629]	chr7	398189	99	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000470715.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.80339	4.092075	5.38076	4.05948e-4	5.85803e-7	0.0135248	4.27724e-5
chr2	61531709	61531806	1459796	0	-	0.371134	(0.36,0.392]	chr2	151804	22	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000495003.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	24	2	3.54545	4.0911550000000005	4.63686	1.85712e-6	2.89674e-9	1.2172e-4	3.19007e-7
chr15	41286434	41286534	7949825	0	+	0.48	(0.459,0.49]	chr15	734623	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	lncRNA	lncRNA	lncRNA	2	14	2	3.13407	4.09096	5.04785	7.72738e-4	2.39418e-5	0.0225969	0.00119556
chr17	6453150	6453249	8856479	0	-	0.484848	(0.459,0.49]	chr17	846738	20	UTR3	UTR3:EXON_MRNA	PITPNM3	ENSG00000091622.16	ENST00000262483.13:ENST00000421306.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.13407	4.09096	5.04785	7.72738e-4	2.39418e-5	0.0225969	0.00119556
chr19	55635114	55635214	9388865	0	+	0.66	(0.629,1]	chr19	916348	2	UTR5	UTR5:EXON_MRNA	ZNF580	ENSG00000213015.9	ENST00000592881.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	3.52552	4.09063	4.65574	2.64806e-6	1.50585e-9	1.6738e-4	1.73555e-7
chr20	43526166	43526265	9654371	0	+	0.494949	(0.49,0.526]	chr20	953709	71	INTRON	INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	3.57253	4.08993	4.60733	2.38382e-5	4.64685e-8	0.00119556	4.23007e-6
chr11	87046759	87046859	6462609	0	+	0.4	(0.392,0.424]	chr11	584094	82	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.96221	4.08981	4.21741	0.00496616	1.96069e-4	0.0964485	0.00725539
chr2	96831019	96831118	1514810	0	-	0.414141	(0.392,0.424]	chr2	157621	58	INTRON	INTRON	ANKRD23	ENSG00000163126.15	ENST00000476975.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	9	2	3.96221	4.08981	4.21741	0.00496616	1.96069e-4	0.0964485	0.00725539
chr2	239224608	239224708	1731372	0	-	0.4	(0.392,0.424]	chr2	177972	337	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000496347.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.96221	4.08981	4.21741	0.00496616	1.96069e-4	0.0964485	0.00725539
chr7	6480311	6480410	4622262	0	-	0.393939	(0.392,0.424]	chr7	416469	57	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.96221	4.08981	4.21741	0.00496616	1.96069e-4	0.0964485	0.00725539
chr5	116174262	116174362	3286574	0	+	0.47	(0.459,0.49]	chr5	302259	397	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.96686	4.08954	4.21222	5.54129e-5	9.25181e-6	0.00252909	5.14007e-4
chr1	65040379	65040479	643942	0	-	0.49	(0.459,0.49]	chr1	71562	364	INTRON	INTRON	JAK1	ENSG00000162434.13	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	4.04656	4.08944	4.13232	3.80472e-5	1.41387e-5	0.00181622	7.54814e-4
chr2	38482708	38482804	995349	0	+	0.552083	(0.526,0.57]	chr2	108331	10	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	46	2	3.96692	4.089035	4.21115	1.29171e-8	1e-12	1.28568e-6	1.73382e-10
chr15	25029334	25029433	7927528	0	+	0.333333	(0.32,0.36]	chr15	731646	89	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000552781.2	lncRNA	lncRNA	lncRNA	lncRNA	4	18	2	3.53935	4.08861	4.63787	3.19299e-4	6.90166e-9	0.010926	7.23885e-7
chr15	56138785	56138885	8182973	0	-	0.43	(0.424,0.459]	chr15	759035	348	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.90943	4.088495	5.26756	0.00449434	8.0232e-6	0.0875511	4.54299e-4
chr4	55856330	55856429	2622663	0	+	0.454545	(0.424,0.459]	chr4	251546	20	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.90943	4.088495	5.26756	0.00449434	8.0232e-6	0.0875511	4.54299e-4
chr10	121836217	121836317	6276537	0	-	0.43	(0.424,0.459]	chr10	561647	1	SS5_PROX	SS5_PROX:INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000485281.2:ENST00000692087.1:ENST00000690415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	3.37907	4.08805	4.79703	2.98646e-4	2.28148e-4	0.0104901	0.00827964
chr18	48652564	48652664	9117119	0	+	0.43	(0.424,0.459]	chr18	879989	155	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	3.37907	4.08805	4.79703	2.98646e-4	2.28148e-4	0.0104901	0.00827964
chr2	55220075	55220173	1450556	0	-	0.44898	(0.424,0.459]	chr2	150386	11	INTRON	INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000487320.5:ENST00000466020.1:ENST00000451916.1:ENST00000464243.1:ENST00000463300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	16	2	3.20588	4.086985	4.96809	6.10851e-5	2.52272e-5	0.0027377	0.00124164
chr1	44811538	44811608	136039	0	+	0.5	(0.49,0.526]	chr1	16573	1	SS3_PROX	SS3_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	3.9073	4.086805	4.26631	7.31994e-5	2.32598e-6	0.00316256	1.50793e-4
chr21	16589451	16589551	9790805	0	+	0.37	(0.36,0.392]	chr21	970686	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000663661.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000656642.2:ENST00000660908.1:ENST00000667804.1:ENST00000400178.7:ENST00000456342.6:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000663933.1:ENST00000670290.1:ENST00000668830.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1:ENST00000654245.1:ENST00000665504.1:ENST00000441820.5:ENST00000602659.2:ENST00000659483.1:ENST00000661939.1:ENST00000666305.1:ENST00000653518.1:ENST00000666704.1:ENST00000602323.1:ENST00000660609.1:ENST00000655790.1:ENST00000660035.1:ENST00000657239.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.91092	4.085775	4.26063	0.00451705	5.00165e-4	0.0875511	0.0160179
chr5	140441542	140441642	3336857	0	+	0.37	(0.36,0.392]	chr5	306268	4	SS5_PROX	SS5_PROX:INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.91092	4.085775	4.26063	0.00451705	5.00165e-4	0.0875511	0.0160179
chr9	33008016	33008116	5604207	0	-	0.37	(0.36,0.392]	chr9	501635	65	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.91092	4.085775	4.26063	0.00451705	5.00165e-4	0.0875511	0.0160179
chr3	196427028	196427128	2531240	0	-	0.41	(0.392,0.424]	chr3	242656	109	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1:ENST00000381887.7:ENST00000493566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	2.84278	4.085225	5.32767	0.00949728	5.95442e-6	0.16275	3.4453e-4
chr5	41856936	41857035	3457366	0	-	0.535354	(0.526,0.57]	chr5	317918	30	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.97495	4.085135	4.19532	3.21576e-5	5.88525e-6	0.00156852	3.44579e-4
chr2	44468860	44468960	1008417	0	+	0.39	(0.36,0.392]	chr2	109402	117	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	4.0035	4.08506	4.16662	9.16296e-5	1.21509e-7	0.00387303	1.01303e-5
chr8	51898729	51898829	5167440	0	-	0.72	(0.629,1]	chr8	463292	4	SS5_PROX	SS5_PROX:INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.91389	4.0847	5.25551	5.22361e-4	1.19594e-6	0.0167376	8.2089e-5
chr18	74987873	74987973	9152677	0	+	0.42	(0.392,0.424]	chr18	882083	668	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	3.97957	4.0846599999999995	4.18975	4.95123e-6	3.14687e-9	2.96695e-4	3.46163e-7
chr1	111628262	111628362	257956	0	+	0.47	(0.459,0.49]	chr1	26658	3	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.40387	4.08444	4.76501	1.53229e-4	1.46149e-4	0.00595859	0.00564049
chr19	4123283	4123383	9412403	0	-	0.61	(0.57,0.629]	chr19	920735	1	SS5_PROX	SS5_PROX:INTRON	MAP2K2	ENSG00000126934.15	ENST00000262948.10:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.42043	4.08438	4.74833	9.02612e-4	1.07277e-4	0.0258498	0.00442346
chr10	87115575	87115675	5924939	0	+	0.37	(0.36,0.392]	chr10	531085	182	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	3.22425	4.08375	4.94325	1.31034e-5	2.68414e-8	6.88973e-4	2.52989e-6
chr12	9251300	9251399	6819472	0	+	0.393939	(0.392,0.424]	chr12	623499	44	INTRON	INTRON	LINC00987	ENSG00000237248.5	ENST00000538219.1	lncRNA	lncRNA	lncRNA	lncRNA	4	20	2	3.90178	4.082985	4.26419	7.45573e-6	2.06452e-7	4.27499e-4	1.64563e-5
chr1	246237223	246237323	915828	0	-	0.45	(0.424,0.459]	chr1	100961	436	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	26	2	3.06866	4.0814	5.09414	1.70365e-5	4.02077e-10	8.74905e-4	4.98364e-8
chr21	16617457	16617556	9791093	0	+	0.363636	(0.36,0.392]	chr21	970711	41	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000413645.2:ENST00000670538.1:ENST00000665243.1:ENST00000663412.1:ENST00000664910.1:ENST00000663516.1:ENST00000671218.1:ENST00000665230.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659209.1:ENST00000665504.1:ENST00000602659.2:ENST00000602323.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.83113	4.081165	4.3312	0.00387074	6.41601e-4	0.078873	0.0193935
chr1	151086057	151086157	296581	0	+	0.45	(0.424,0.459]	chr1	31627	125	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	3.5463	4.080265	4.61423	0.00153741	4.85762e-7	0.0389999	3.605e-5
chr1	10039983	10040083	26772	0	+	0.45	(0.424,0.459]	chr1	2673	59	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.64041	4.07948	4.51855	0.00115507	8.67885e-7	0.0316008	6.19626e-5
chr15	64113755	64113850	8003417	0	+	0.442105	(0.424,0.459]	chr15	740022	7	INTRON	INTRON	SNX1	ENSG00000028528.15	ENST00000560829.5:ENST00000559061.5:ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000560260.5:ENST00000561026.5:ENST00000625244.2:ENST00000558040.5:ENST00000559389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	3.64041	4.07948	4.51855	0.00115507	8.67885e-7	0.0316008	6.19626e-5
chr1	95156918	95157018	239041	0	+	0.44	(0.424,0.459]	chr1	24040	51	INTRON	INTRON	TLCD4	ENSG00000152078.10	ENST00000370203.9:ENST00000456991.5:ENST00000455656.1	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	3.69974	4.07911	4.45848	9.50281e-7	5.48586e-9	6.73936e-5	5.79354e-7
chr9	558119	558219	5316248	0	+	0.42	(0.392,0.424]	chr9	475861	80	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000688973.1:ENST00000687982.1:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000692174.1:ENST00000693552.1:ENST00000685947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	3.97957	4.079095	4.17862	4.01331e-5	4.95123e-6	0.00187621	2.96695e-4
chr11	93798511	93798609	6467269	0	+	0.397959	(0.392,0.424]	chr11	584560	4	INTRON	INTRON	MED17	ENSG00000042429.12	ENST00000640583.1:ENST00000640804.1:ENST00000638487.1:ENST00000639596.1:ENST00000251871.9:ENST00000640027.1:ENST00000639189.1:ENST00000525026.6:ENST00000533133.6:ENST00000639724.1:ENST00000639457.1:ENST00000640473.1:ENST00000640451.1:ENST00000507258.4:ENST00000640521.1:ENST00000638518.1:ENST00000638790.1:ENST00000639523.1:ENST00000640077.1:ENST00000529626.2:ENST00000533367.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	3.62464	4.078915	4.53319	1.11057e-4	1.61757e-6	0.00448562	1.08646e-4
chr4	100621050	100621150	2968688	0	-	0.51	(0.49,0.526]	chr4	278663	367	INTRON	INTRON	EMCN	ENSG00000164035.10	ENST00000510657.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	13	2	4.0726	4.078765000000001	4.08493	0.00395081	1.93553e-5	0.0816719	9.87839e-4
chr11	47512580	47512679	6604700	0	-	0.464646	(0.459,0.49]	chr11	601342	53	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.64423	4.07839	4.51255	6.3564e-4	6.20842e-4	0.0193151	0.0191195
chr16	67533115	67533214	8409637	0	+	0.474747	(0.459,0.49]	chr16	787392	11	INTRON	INTRON	RIPOR1	ENSG00000039523.20	ENST00000562116.1:ENST00000562755.5:ENST00000379312.7:ENST00000042381.9:ENST00000566522.5:ENST00000540839.7:ENST00000566907.1:ENST00000422602.8:ENST00000566920.5:ENST00000565176.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.64423	4.07839	4.51255	6.3564e-4	6.20842e-4	0.0193151	0.0191195
chr12	51083006	51083058	7165120	0	-	0.461538	(0.459,0.49]	chr12	659328	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.39129	4.07815	4.76501	0.00244536	1.46149e-4	0.0587626	0.00564049
chr7	26180376	26180476	4661150	0	-	0.41	(0.392,0.424]	chr7	418768	52	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.39796	4.077965	4.75797	0.00439831	2.01084e-7	0.0875511	1.60882e-5
chr2	216144700	216144799	1309285	0	+	0.454545	(0.424,0.459]	chr2	134624	30	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	31	2	3.69974	4.077515	4.45529	9.50281e-7	1.41536e-11	6.73936e-5	2.13224e-9
chrX	73826199	73826298	10373469	0	-	0.464646	(0.459,0.49]	chrX	1029941	57	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	9	52	2	3.56018	4.076745	4.59331	2.77216e-9	1e-12	3.07081e-7	1.72912e-10
chr2	229677059	229677159	1718872	0	-	0.38	(0.36,0.392]	chr2	176276	848	INTRON	INTRON	DNER	ENSG00000187957.8	ENST00000341772.5	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	3.75267	4.075495	4.39832	9.2989e-10	1.47737e-12	1.09893e-7	2.50186e-10
chr1	93270914	93271014	235038	0	+	0.3	[0,0.32]	chr1	23607	1	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000688770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	22	2	2.81207	4.07515	5.33823	1.08049e-4	2.44269e-10	0.00442392	3.11038e-8
chr1	160228331	160228430	785667	0	-	0.393939	(0.392,0.424]	chr1	87730	23	INTRON	INTRON	DCAF8	ENSG00000132716.19	ENST00000326837.6:ENST00000368073.7:ENST00000368074.6:ENST00000461888.5:ENST00000466253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	3.7075	4.074785	4.44207	9.40427e-4	5.58952e-6	0.0266969	3.2822e-4
chr5	10357862	10357961	3119898	0	+	0.393939	(0.392,0.424]	chr5	288981	28	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	3.7075	4.074785	4.44207	9.40427e-4	5.58952e-6	0.0266969	3.2822e-4
chr7	128954921	128955013	4841751	0	-	0.423913	(0.392,0.424]	chr7	433745	9	UTR3	UTR3:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.7075	4.074785	4.44207	9.40427e-4	5.58952e-6	0.0266969	3.2822e-4
chr14	34621690	34621789	7802879	0	-	0.393939	(0.392,0.424]	chr14	718290	116	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	3.78194	4.074355	4.36677	7.47402e-4	8.10105e-6	0.0225125	4.57465e-4
chr10	21653865	21653965	5811735	0	+	0.5	(0.49,0.526]	chr10	522872	17	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	3.03227	4.0742	5.11613	1.31336e-4	1.03252e-5	0.00519725	5.57702e-4
chr12	39808823	39808923	7143854	0	-	0.3	[0,0.32]	chr12	656027	436	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.75039	4.074105	4.39782	0.00334699	0.00182075	0.0734189	0.0469284
chr12	50596090	50596190	6909159	0	+	0.31	[0,0.32]	chr12	629879	905	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.75039	4.074105	4.39782	0.00334699	0.00182075	0.0734189	0.0469284
chr17	29545616	29545716	8688406	0	+	0.32	[0,0.32]	chr17	822410	27	UTR3	UTR3:EXON_MRNA	TAOK1	ENSG00000160551.12	ENST00000261716.8	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.75039	4.074105	4.39782	0.00334699	0.00182075	0.0734189	0.0469284
chr9	96647416	96647516	5673823	0	-	0.32	[0,0.32]	chr9	508142	10	INTRON	INTRON	PRXL2C	ENSG00000158122.12	ENST00000375234.8:ENST00000446045.1:ENST00000411939.5:ENST00000464512.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.75039	4.074105	4.39782	0.00334699	0.00182075	0.0734189	0.0469284
chr1	183120231	183120330	374268	0	+	0.30303	[0,0.32]	chr1	40500	17	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.35176	4.0737	4.79564	0.0102933	5.01883e-4	0.170122	0.0161742
chr3	142527393	142527493	2459572	0	-	0.26	[0,0.32]	chr3	236203	28	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.35176	4.0737	4.79564	0.0102933	5.01883e-4	0.170122	0.0161742
chr16	30885146	30885245	8370998	0	+	0.494949	(0.49,0.526]	chr16	781743	87	INTRON	INTRON	MIR762HG	ENSG00000260083.3	ENST00000570025.1:ENST00000663816.1:ENST00000564901.1:ENST00000662645.2:ENST00000565573.2:ENST00000656372.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.50606	4.073665	4.64127	0.0010102	2.4929e-4	0.0282228	0.0089494
chr19	19036954	19037051	9309115	0	+	0.515464	(0.49,0.526]	chr19	902063	24	INTRON	INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000540707.5:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000543877.1:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.50606	4.073665	4.64127	0.0010102	2.4929e-4	0.0282228	0.0089494
chr3	184318897	184318994	2122875	0	+	0.494845	(0.49,0.526]	chr3	208426	7	INTRON	INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.50606	4.073665	4.64127	0.0010102	2.4929e-4	0.0282228	0.0089494
chrX	31164649	31164749	10300024	0	-	0.51	(0.49,0.526]	chrX	1024229	163	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000481143.2:ENST00000378723.7:ENST00000681989.1:ENST00000681026.1:ENST00000679437.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000679850.1:ENST00000680701.1:ENST00000680557.1:ENST00000620040.5:ENST00000684072.1:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000684350.1:ENST00000682207.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000679706.1:ENST00000681153.1:ENST00000683503.1:ENST00000683995.1:ENST00000684342.1:ENST00000683957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.50606	4.073665	4.64127	0.0010102	2.4929e-4	0.0282228	0.0089494
chr17	76741968	76742048	8804160	0	+	0.4875	(0.459,0.49]	chr17	838672	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MFSD11	ENSG00000092931.12	ENST00000586622.5:ENST00000621483.4:ENST00000355954.7:ENST00000588460.6:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000588031.5:ENST00000685175.1:ENST00000588670.5:ENST00000588768.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	3.76157	4.07308	4.38459	2.78194e-9	2.5619e-9	3.0689e-7	2.87003e-7
chr19	49087633	49087705	9373129	0	+	0.486111	(0.459,0.49]	chr19	912685	1	UTR5	UTR5:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.31269	4.072699999999999	4.83271	0.00308309	1.09213e-4	0.0699986	0.00442392
chr11	19607662	19607762	6340293	0	+	0.44	(0.424,0.459]	chr11	568833	2563	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8	protein_coding	protein_coding	protein_coding	protein_coding	13	58	2	3.92187	4.07254	4.22321	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	118520064	118520164	6508670	0	+	0.48	(0.459,0.49]	chr11	589049	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000691053.1:ENST00000649699.1:ENST00000648565.1:ENST00000527839.2:ENST00000686588.1:ENST00000525408.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.56515	4.072455	4.57976	8.21277e-4	4.98571e-4	0.0238805	0.0160179
chr15	28304494	28304594	8112565	0	-	0.49	(0.459,0.49]	chr15	750648	46	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.56515	4.072455	4.57976	8.21277e-4	4.98571e-4	0.0238805	0.0160179
chr5	132627853	132627952	3318751	0	+	0.474747	(0.459,0.49]	chr5	304457	92	INTRON	INTRON	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.56515	4.072455	4.57976	8.21277e-4	4.98571e-4	0.0238805	0.0160179
chr17	44011557	44011649	8940120	0	-	0.543478	(0.526,0.57]	chr17	859373	5	UTR3	UTR3:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.54588	4.072085	4.59829	2.75366e-5	4.99738e-8	0.00135076	4.53531e-6
chr15	83058331	83058430	8262621	0	-	0.292929	[0,0.32]	chr15	767256	14	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.27638	4.07079	4.8652	0.0118823	4.11137e-4	0.184357	0.0138446
chr4	168788329	168788429	2787922	0	+	0.3	[0,0.32]	chr4	264125	757	INTRON	INTRON	PALLD	ENSG00000129116.19	ENST00000505667.6:ENST00000261509.10:ENST00000512127.5:ENST00000649826.1:ENST00000510998.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.27638	4.07079	4.8652	0.0118823	4.11137e-4	0.184357	0.0138446
chr1	23304206	23304306	542809	0	-	0.48	(0.459,0.49]	chr1	59941	1	SS3_PROX	SS3_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000464516.1:ENST00000641107.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	28	2	3.60305	4.070715	4.53838	2.24187e-7	5.53598e-8	1.8079e-5	4.89622e-6
chrX	149605789	149605877	10457842	0	-	0.534091	(0.526,0.57]	chrX	1036121	2	INTRON	INTRON	TMEM185A	ENSG00000269556.9	ENST00000600449.8:ENST00000612022.1:ENST00000611119.4:ENST00000502858.3:ENST00000502618.5:ENST00000507237.5:ENST00000502900.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	3.4704	4.070705	4.67101	4.12702e-5	2.77771e-8	0.00192437	2.62893e-6
chr16	22493419	22493518	8349429	0	+	0.50505	(0.49,0.526]	chr16	778519	12	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.98392	4.07053	4.15714	0.00319561	3.07012e-5	0.0699484	0.00150487
chr20	46361216	46361314	9751167	0	-	0.5	(0.49,0.526]	chr20	966338	19	INTRON	INTRON	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000317734.12:ENST00000484318.5:ENST00000481809.1:ENST00000484188.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	58	2	3.59593	4.070485	4.54504	1.60438e-12	1e-12	2.69594e-10	1.73382e-10
chr1	113002586	113002685	261826	0	+	0.272727	[0,0.32]	chr1	27081	3	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	1	7	2	3.6742	4.070385	4.46657	0.00288167	0.00220802	0.0662445	0.053911
chr11	120452124	120452224	6513702	0	+	0.31	[0,0.32]	chr11	590003	4	SS5_PROX	SS5_PROX:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000532823.5:ENST00000525222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.6742	4.070385	4.46657	0.00288167	0.00220802	0.0662445	0.053911
chr12	67298949	67299022	6944449	0	+	0.287671	[0,0.32]	chr12	635594	1	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.6742	4.070385	4.46657	0.00288167	0.00220802	0.0662445	0.053911
chr2	161327057	161327157	1193044	0	+	0.32	[0,0.32]	chr2	125457	78	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.6742	4.070385	4.46657	0.00288167	0.00220802	0.0662445	0.053911
chr7	30309761	30309861	4349029	0	+	0.19	[0,0.32]	chr7	392713	209	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.6742	4.070385	4.46657	0.00288167	0.00220802	0.0662445	0.053911
chr11	78109981	78110081	6662155	0	-	0.46	(0.459,0.49]	chr11	610955	4	SS3_PROX	SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	3.77994	4.0703700000000005	4.3608	2.14818e-4	2.23014e-6	0.00789628	1.43671e-4
chr10	122237638	122237712	6006348	0	+	0.5	(0.49,0.526]	chr10	539171	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TACC2	ENSG00000138162.19	ENST00000369005.6:ENST00000513429.5:ENST00000515603.5:ENST00000515273.5:ENST00000334433.7:ENST00000358010.5:ENST00000453444.6:ENST00000369001.5:ENST00000369000.5:ENST00000360561.7:ENST00000368999.5:ENST00000369004.7:ENST00000260733.7:ENST00000368997.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	83	2	3.7468	4.069575	4.39235	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	109302293	109302385	2993146	0	-	0.652174	(0.629,1]	chr4	280120	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5:ENST00000505591.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.79995	4.06947	4.33899	8.51164e-4	2.99254e-5	0.0245129	0.00144698
chr14	102784760	102784860	7761209	0	+	0.58	(0.57,0.629]	chr14	712627	67	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.38952	4.068925	4.74833	1.07277e-4	4.23084e-5	0.00442346	0.00196405
chr5	61158873	61158970	3489275	0	-	0.340206	(0.32,0.36]	chr5	319552	13	UTR3	UTR3:EXON_MRNA	SMIM15	ENSG00000188725.8	ENST00000339020.8	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.90902	4.06881	4.2286	5.03152e-4	1.30322e-6	0.0161742	8.87161e-5
chr19	862691	862791	9258802	0	+	0.59	(0.57,0.629]	chr19	891510	2	SS3_PROX	SS3_PROX:INTRON	CFD	ENSG00000197766.9	ENST00000695942.1:ENST00000695943.1:ENST00000327726.11:ENST00000592860.3:ENST00000695945.1:ENST00000695944.1:ENST00000695946.1	protein_coding	protein_coding	protein_coding	protein_coding	12	82	2	3.67239	4.068585000000001	4.46478	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	109234007	109234107	2992462	0	-	0.34	(0.32,0.36]	chr4	280109	1835	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	3.28365	4.067295	4.85094	0.00153031	2.73185e-7	0.0389999	2.11622e-5
chr15	65540829	65540928	8007765	0	+	0.464646	(0.459,0.49]	chr15	740483	46	INTRON	INTRON	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566239.1:ENST00000566074.5:ENST00000566511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	3.85282	4.06678	4.28074	3.57604e-6	2.77093e-6	2.18487e-4	1.73137e-4
chr11	62857752	62857852	6408569	0	+	0.52	(0.49,0.526]	chr11	575416	9	INTRON	INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.41836	4.066625	4.71489	0.00136895	1.81396e-4	0.0359623	0.0069054
chr12	104298466	104298566	7002919	0	+	0.5	(0.49,0.526]	chr12	640186	70	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000528079.6:ENST00000526580.5:ENST00000529784.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.41836	4.066625	4.71489	0.00136895	1.81396e-4	0.0359623	0.0069054
chr16	30288360	30288460	8544520	0	-	0.51	(0.49,0.526]	chr16	804186	4	SS5_PROX	SS5_PROX:INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	12	2	3.41836	4.066625	4.71489	0.00136895	1.81396e-4	0.0359623	0.0069054
chr7	129938923	129939023	4843989	0	-	0.5	(0.49,0.526]	chr7	433954	13	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.41836	4.066625	4.71489	0.00136895	1.81396e-4	0.0359623	0.0069054
chr16	54286602	54286694	8559725	0	-	0.445652	(0.424,0.459]	chr16	805752	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IRX3	ENSG00000177508.12	ENST00000329734.4:ENST00000558180.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	4.01664	4.066179999999999	4.11572	1.00233e-6	5.35731e-7	7.01342e-5	3.93507e-5
chr17	57268943	57269042	8748578	0	+	0.464646	(0.459,0.49]	chr17	832983	5	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000581523.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000579531.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	3.63487	4.065185	4.4955	1.69661e-5	5.33756e-7	8.71289e-4	3.92587e-5
chr9	123184222	123184310	5725037	0	-	0.488636	(0.459,0.49]	chr9	513495	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	3.51124	4.06493	4.61862	2.0166e-7	2.51524e-11	1.61222e-5	3.66433e-9
chr8	98507656	98507756	5225076	0	-	0.45	(0.424,0.459]	chr8	467670	513	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000517832.1:ENST00000617590.1:ENST00000419617.7:ENST00000523601.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	3.37907	4.0642	4.74933	2.98646e-4	9.96009e-8	0.0104901	8.4812e-6
chr2	55045515	55045615	1449381	0	-	0.39	(0.36,0.392]	chr2	150276	169	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.86419	4.063845	4.2635	1.86173e-5	4.58367e-7	9.46472e-4	3.4135e-5
chr5	137391943	137392043	3608145	0	-	0.49	(0.459,0.49]	chr5	327611	266	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.96081	4.063765	5.16672	4.52907e-4	7.74288e-6	0.0150584	4.39068e-4
chr22	50245909	50246000	10064679	0	-	0.725275	(0.629,1]	chr22	1003709	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HDAC10:MAPK12	ENSG00000100429.18:ENSG00000188130.14	ENST00000216271.10:ENST00000415993.5:ENST00000626012.2:ENST00000429374.5:ENST00000498366.5:ENST00000483222.5:ENST00000448072.5:ENST00000454936.5:ENST00000497036.5:ENST00000477814.5:ENST00000349505.4:ENST00000497952.5:ENST00000496235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	3.91228	4.062965	4.21365	1.12818e-5	4.25699e-7	6.02727e-4	3.19936e-5
chr3	179218271	179218334	2114146	0	+	0.428571	(0.424,0.459]	chr3	206810	2	CDS	CDS:UTR3:EXON_MRNA	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1:ENST00000674534.1:ENST00000674622.1:ENST00000462255.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	32	2	3.30899	4.062905	4.81682	6.38655e-7	1.11867e-11	4.64531e-5	1.71744e-9
chr12	28260738	28260837	6857380	0	+	0.353535	(0.32,0.36]	chr12	626399	9	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.39891	4.062704999999999	4.7265	0.00108651	6.12159e-4	0.0301638	0.0189985
chr12	89631536	89631634	7231396	0	-	0.357143	(0.32,0.36]	chr12	666804	5	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.39891	4.062704999999999	4.7265	0.00108651	6.12159e-4	0.0301638	0.0189985
chr13	114013548	114013648	7570591	0	-	0.55	(0.526,0.57]	chr13	696708	3	SS3_PROX	SS3_PROX:INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	4.04709	4.06238	4.07767	0.00403601	2.21154e-5	0.0817225	0.00112425
chr12	62779135	62779235	7185720	0	-	0.43	(0.424,0.459]	chr12	663741	412	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	4.01346	4.062195	4.11093	0.00778514	5.36389e-5	0.130982	0.00243585
chr12	2888269	2888359	6803680	0	+	0.522222	(0.49,0.526]	chr12	620894	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RHNO1:TULP3	ENSG00000171792.11:ENSG00000078246.17	ENST00000618250.4:ENST00000461997.5:ENST00000464682.2:ENST00000540184.5:ENST00000489288.7:ENST00000623153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	17	99	2	3.55606	4.060565	4.56507	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35272088	35272188	9936875	0	+	0.43	(0.424,0.459]	chr22	987288	61	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	38	2	3.85846	4.060415	4.26237	3.21636e-9	3.4629e-12	3.53547e-7	5.60242e-10
chr2	23686516	23686614	948537	0	+	0.622449	(0.57,0.629]	chr2	103596	16	INTRON	INTRON	KLHL29	ENSG00000119771.15	ENST00000486442.6:ENST00000288548.5	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	3.20863	4.058925	4.90922	9.24106e-7	2.65774e-10	6.56152e-5	3.37369e-8
chr6	14129125	14129225	3717623	0	+	0.42	(0.392,0.424]	chr6	337937	107	INTRON	INTRON	CD83	ENSG00000112149.10	ENST00000612003.4:ENST00000379153.4	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	4.05097	4.05809	4.06521	1.60652e-6	3.68288e-8	1.08441e-4	3.38313e-6
chr12	20669559	20669659	6845079	0	+	0.34	(0.32,0.36]	chr12	625129	150	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	34	2	3.66398	4.057415	4.45085	4.40522e-9	4.6817e-12	4.7358e-7	7.51381e-10
chr17	31978908	31979008	8698061	0	+	0.53	(0.526,0.57]	chr17	823683	19	INTRON	INTRON	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.48083	4.05735	4.63387	0.00110295	2.57391e-4	0.0304129	0.00911512
chr9	128860631	128860731	5746795	0	-	0.55	(0.526,0.57]	chr9	515607	2	INTRON	INTRON	KYAT1	ENSG00000171097.14	ENST00000462722.5:ENST00000302586.8:ENST00000320665.10:ENST00000436267.7:ENST00000451800.5:ENST00000474824.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.48083	4.05735	4.63387	0.00110295	2.57391e-4	0.0304129	0.00911512
chr7	55160238	55160338	4391304	0	+	0.36	(0.32,0.36]	chr7	395495	2	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7	protein_coding	protein_coding	protein_coding	protein_coding	81	240	2	3.82942	4.05657	4.28372	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	45975745	45975838	7515419	0	-	0.473118	(0.459,0.49]	chr13	691139	6	CDS	CDS:EXON_MRNA	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	34	168	2	3.97506	4.05603	4.137	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	89150928	89151027	8481199	0	+	0.414141	(0.392,0.424]	chr16	792892	35	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF3	ENSG00000176715.17	ENST00000317447.9:ENST00000614302.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000537116.5:ENST00000537155.1:ENST00000535176.1:ENST00000393145.5:ENST00000562750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	69	2	3.67948	4.055994999999999	4.43251	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	94964706	94964805	6710951	0	-	0.353535	(0.32,0.36]	chr11	613101	8	INTRON	INTRON	CWC15	ENSG00000150316.12	ENST00000279839.8:ENST00000616442.4:ENST00000621358.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.28365	4.05574	4.82783	0.00153031	4.57616e-4	0.0389999	0.0150584
chr19	45791387	45791487	9513861	0	-	0.49	(0.459,0.49]	chr19	938580	3	SS3_PROX	SS3_PROX:INTRON	DMWD	ENSG00000185800.12	ENST00000270223.7:ENST00000377735.7:ENST00000601370.1:ENST00000598237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.87644	4.055735	5.23503	6.44081e-4	5.25256e-6	0.0194527	3.11102e-4
chr5	37306697	37306796	3443293	0	-	0.494949	(0.49,0.526]	chr5	316838	11	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.72059	4.05517	4.38975	9.92102e-4	2.73826e-4	0.0276375	0.00975361
chr11	71916687	71916780	6635922	0	-	0.451613	(0.424,0.459]	chr11	607973	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5:ENST00000679412.2:ENST00000528511.6:ENST00000528560.2:ENST00000529844.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	4.01593	4.055095	4.09426	0.00651192	8.03177e-5	0.116758	0.00342222
chr11	34938151	34938251	6369803	0	+	0.36	(0.32,0.36]	chr11	570836	63	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	3.35769	4.05485	4.75201	3.03605e-6	1.17755e-9	1.89971e-4	1.3764e-7
chr2	111322747	111322846	1544063	0	-	0.525253	(0.49,0.526]	chr2	160122	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000673843.1:ENST00000661707.1:ENST00000444301.5:ENST00000673964.1:ENST00000673959.1:ENST00000622940.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.25397	4.054675	4.85538	0.00365962	6.26806e-5	0.0766409	0.00277665
chr1	41000117	41000212	121753	0	+	0.442105	(0.424,0.459]	chr1	14285	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000463285.7:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000372616.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr1	155526510	155526610	777086	0	-	0.44	(0.424,0.459]	chr1	85749	45	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr1	183047904	183048004	373531	0	+	0.43	(0.424,0.459]	chr1	40445	234	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr1	197637519	197637619	831195	0	-	0.44	(0.424,0.459]	chr1	92238	194	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11:ENST00000367396.7:ENST00000235453.8:ENST00000496935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr11	10281522	10281622	6562314	0	-	0.44	(0.424,0.459]	chr11	596549	872	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr11	75328027	75328127	6652947	0	-	0.45	(0.424,0.459]	chr11	610002	160	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr12	19684940	19685040	6841688	0	+	0.44	(0.424,0.459]	chr12	625034	1318	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr12	56206148	56206247	7176111	0	-	0.454545	(0.424,0.459]	chr12	661510	41	UTR3	UTR3:EXON_MRNA	RNF41	ENSG00000181852.18	ENST00000345093.9:ENST00000615206.4:ENST00000394013.6:ENST00000547967.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr13	52632594	52632694	7388355	0	+	0.43	(0.424,0.459]	chr13	682683	1	SS5_PROX	SS5_PROX:INTRON	MRPS31P4	ENSG00000250299.6	ENST00000613769.4:ENST00000509685.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr14	64418224	64418324	7653682	0	+	0.44	(0.424,0.459]	chr14	704648	2	SS5_PROX	SS5_PROX:INTRON	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000555252.5:ENST00000555709.7:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr16	24197212	24197311	8355386	0	+	0.454545	(0.424,0.459]	chr16	778983	56	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr16	69426895	69426993	8421671	0	+	0.428571	(0.424,0.459]	chr16	788899	16	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr17	9415317	9415417	8868258	0	-	0.44	(0.424,0.459]	chr17	848799	363	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr17	18870600	18870698	8668927	0	+	0.44898	(0.424,0.459]	chr17	820228	29	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000441887.5:ENST00000610773.4:ENST00000432893.6:ENST00000573432.5:ENST00000414602.5:ENST00000574522.5:ENST00000570450.5:ENST00000492129.5:ENST00000419071.6:ENST00000573253.5:ENST00000487101.5:ENST00000536323.5:ENST00000571907.5:ENST00000419284.6:ENST00000412418.5:ENST00000268835.7:ENST00000575228.5:ENST00000395656.6:ENST00000478622.6:ENST00000455992.6:ENST00000576355.5:ENST00000422237.5:ENST00000542013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr17	47328956	47329038	8732078	0	+	0.451219	(0.424,0.459]	chr17	829729	3	UTR5	UTR5:EXON_MRNA:INTRON	EFCAB13	ENSG00000178852.16	ENST00000523285.5:ENST00000517310.5:ENST00000331493.7:ENST00000520802.5:ENST00000517484.5:ENST00000519772.5:ENST00000520776.5:ENST00000518646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr17	60050642	60050742	8974150	0	-	0.45	(0.424,0.459]	chr17	864347	4	SS5_PROX	SS5_PROX:INTRON	HEATR6	ENSG00000068097.16	ENST00000184956.11:ENST00000585976.5:ENST00000587003.5:ENST00000591683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr19	24118889	24118989	9319083	0	+	0.44	(0.424,0.459]	chr19	903244	117	INTRON	INTRON	ZNF254	ENSG00000213096.11	ENST00000613065.4:ENST00000611359.3:ENST00000616028.2:ENST00000594886.5:ENST00000357002.5:ENST00000595187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr19	46898594	46898694	9366700	0	+	0.45	(0.424,0.459]	chr19	911651	370	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	44740832	44740932	1011147	0	+	0.45	(0.424,0.459]	chr2	109452	167	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000477830.1:ENST00000613618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	45693745	45693844	1011900	0	+	0.454545	(0.424,0.459]	chr2	109511	75	INTRON	INTRON	PRKCE	ENSG00000171132.14	ENST00000421201.1:ENST00000306156.8:ENST00000462720.6:ENST00000480453.5:ENST00000476675.5:ENST00000467135.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	53772431	53772530	1446422	0	-	0.444444	(0.424,0.459]	chr2	149923	43	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000263634.8:ENST00000406625.6:ENST00000394717.3:ENST00000406687.5:ENST00000498475.2:ENST00000470916.5:ENST00000459916.1:ENST00000414369.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	64994759	64994859	1054807	0	+	0.45	(0.424,0.459]	chr2	112326	42	INTRON	INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	120133013	120133113	1133829	0	+	0.44	(0.424,0.459]	chr2	121479	9	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000452780.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	171985752	171985852	1614345	0	-	0.45	(0.424,0.459]	chr2	166910	642	INTRON	INTRON	SLC25A12	ENSG00000115840.14	ENST00000472748.5:ENST00000484227.5:ENST00000464063.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	178579943	178580039	1224571	0	+	0.447917	(0.424,0.459]	chr2	128243	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTN-AS1:ENSG00000270574	ENSG00000237298.10:ENSG00000270574.1	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000438095.1:ENST00000590932.5:ENST00000603521.1	lncRNA	lncRNA	lncRNA	lncRNA	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr2	203248012	203248111	1272714	0	+	0.444444	(0.424,0.459]	chr2	132652	7	INTRON	INTRON	CYP20A1	ENSG00000119004.17	ENST00000449301.5:ENST00000429815.6:ENST00000461371.5:ENST00000463131.5:ENST00000356079.9:ENST00000489360.5:ENST00000428265.5:ENST00000431118.5:ENST00000443941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr3	15243246	15243345	1778126	0	+	0.444444	(0.424,0.459]	chr3	182871	6	INTRON	INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000443567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr3	78939027	78939127	2351866	0	-	0.44	(0.424,0.459]	chr3	227144	1	SS3_PROX	SS3_PROX:INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr3	160828527	160828627	2070158	0	+	0.45	(0.424,0.459]	chr3	205522	715	INTRON	INTRON	PPM1L	ENSG00000163590.14	ENST00000497343.5:ENST00000498165.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr3	168049863	168049963	2483047	0	-	0.43	(0.424,0.459]	chr3	238238	11	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr4	83051973	83052071	2670697	0	+	0.44898	(0.424,0.459]	chr4	254658	16	INTRON	INTRON	COPS4	ENSG00000138663.9	ENST00000509093.5:ENST00000509317.5:ENST00000264389.7:ENST00000506443.5:ENST00000503682.5:ENST00000511653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr4	150985623	150985723	3056524	0	-	0.44	(0.424,0.459]	chr4	283766	562	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr5	74743098	74743197	3501943	0	-	0.454545	(0.424,0.459]	chr5	320750	11	INTRON	INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000427854.6:ENST00000509097.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr5	93731117	93731217	3540222	0	-	0.43	(0.424,0.459]	chr5	322880	476	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr5	176979920	176980020	3669992	0	-	0.44	(0.424,0.459]	chr5	333850	4	SS5_PROX	SS5_PROX:INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1:ENST00000505879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr6	5653512	5653612	3698346	0	+	0.45	(0.424,0.459]	chr6	336670	398	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr6	111345636	111345735	4166073	0	-	0.434343	(0.424,0.459]	chr6	379331	12	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7:ENST00000413831.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr6	165648523	165648623	4267218	0	-	0.43	(0.424,0.459]	chr6	386857	372	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr6	170399765	170399864	3982373	0	+	0.434343	(0.424,0.459]	chr6	361126	38	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr7	100197613	100197677	4490374	0	+	0.453125	(0.424,0.459]	chr7	403935	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3	ENSG00000066923.18	ENST00000426455.5:ENST00000394018.6:ENST00000317296.9:ENST00000615138.5:ENST00000620100.5:ENST00000496157.5:ENST00000412190.6:ENST00000491498.5:ENST00000440830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr7	134790128	134790228	4559739	0	+	0.45	(0.424,0.459]	chr7	409537	100	INTRON	INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000454108.5:ENST00000361675.7:ENST00000475772.5:ENST00000430085.5:ENST00000462181.1:ENST00000482470.5:ENST00000361901.6:ENST00000498254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chr9	5999614	5999714	5548412	0	-	0.44	(0.424,0.459]	chr9	499407	107	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000399933.8:ENST00000381461.6:ENST00000513355.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	4.01346	4.05386	4.09426	0.00778514	0.00651192	0.130982	0.116758
chrX	15803687	15803741	10087626	0	+	0.425926	(0.424,0.459]	chrX	1006300	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000468028.1:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	41	168	2	3.89702	4.05221	4.2074	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	44445089	44445189	4710510	0	-	0.53	(0.526,0.57]	chr7	421990	170	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.40949	4.0515550000000005	4.69362	0.00141136	1.98837e-4	0.0368074	0.00746609
chr3	174454417	174454517	2090841	0	+	0.37	(0.36,0.392]	chr3	206467	130	INTRON	INTRON	NAALADL2	ENSG00000177694.16	ENST00000491329.5:ENST00000482228.5:ENST00000481679.5:ENST00000478624.1:ENST00000495900.5:ENST00000434257.1:ENST00000489729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	52	2	3.72186	4.051395	4.38093	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	40399304	40399404	9498238	0	-	0.43	(0.424,0.459]	chr19	935695	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PRX	ENSG00000105227.16	ENST00000673881.1:ENST00000674005.2:ENST00000324001.8:ENST00000291825.11:ENST00000674773.1:ENST00000675300.1:ENST00000674642.1:ENST00000674978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.89477	4.04919	4.20361	2.5121e-4	1.79381e-5	0.00902798	9.13813e-4
chr3	177176305	177176404	2499793	0	-	0.494949	(0.49,0.526]	chr3	239263	50	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	15	2	2.98025	4.04819	5.11613	0.00137414	1.03252e-5	0.0360194	5.57702e-4
chr1	184712515	184712598	821028	0	-	0.277108	[0,0.32]	chr1	91135	2	CDS	CDS:EXON_MRNA	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000687397.1:ENST00000692170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.69747	4.047645	4.39782	0.00334699	1.81106e-4	0.0734189	0.0069054
chr19	1587051	1587150	9402869	0	-	0.515152	(0.49,0.526]	chr19	918972	8	INTRON	INTRON	MBD3	ENSG00000071655.18	ENST00000434436.8:ENST00000156825.5:ENST00000585967.5:ENST00000592965.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.63247	4.047635	4.4628	7.611e-4	3.91053e-4	0.0225125	0.0131535
chr20	44511088	44511188	9748286	0	-	0.52	(0.49,0.526]	chr20	965729	4	SS5_PROX	SS5_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.63247	4.047635	4.4628	7.611e-4	3.91053e-4	0.0225125	0.0131535
chr9	128186374	128186473	5744718	0	-	0.525253	(0.49,0.526]	chr9	515093	2	INTRON	INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.63247	4.047635	4.4628	7.611e-4	3.91053e-4	0.0225125	0.0131535
chr1	35446781	35446880	568325	0	-	0.525253	(0.49,0.526]	chr1	63856	21	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000373266.8:ENST00000426982.6:ENST00000485551.5:ENST00000473844.1:ENST00000474856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	16	2	2.60562	4.047420000000001	5.48922	0.0102832	2.5213e-7	0.170122	2.01203e-5
chr1	93124754	93124853	233930	0	+	0.323232	(0.32,0.36]	chr1	23390	35	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9:ENST00000471953.5:ENST00000370303.4:ENST00000467953.5:ENST00000497976.5:ENST00000476037.5:ENST00000487263.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.59803	4.04648	4.49493	0.00267453	1.01106e-5	0.0637459	5.51435e-4
chr1	43737224	43737324	128842	0	+	0.34	(0.32,0.36]	chr1	15624	9	EXON_MRNA	EXON_MRNA:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000646776.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.70951	4.045675	4.38184	0.00201951	1.66191e-5	0.0510613	8.55383e-4
chrX	54550026	54550105	10132893	0	+	0.443038	(0.424,0.459]	chrX	1010794	1	SS3_PROX	SS3_PROX:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	62	2	3.55684	4.0456199999999995	4.5344	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	28007485	28007583	553705	0	-	0.489796	(0.459,0.49]	chr1	61541	27	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	32662737	32662837	99922	0	+	0.47	(0.459,0.49]	chr1	11232	4	SS5_PROX	SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	113031778	113031878	262120	0	+	0.49	(0.459,0.49]	chr1	27086	231	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	116916844	116916944	269707	0	+	0.49	(0.459,0.49]	chr1	27829	62	INTRON	INTRON	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	153908576	153908676	769460	0	-	0.47	(0.459,0.49]	chr1	84230	92	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	161317953	161318052	316350	0	+	0.484848	(0.459,0.49]	chr1	35774	27	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000515731.1:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr1	169149995	169150095	333936	0	+	0.46	(0.459,0.49]	chr1	37439	151	INTRON	INTRON	ATP1B1	ENSG00000143153.14	ENST00000688755.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr10	63414147	63414247	6148404	0	-	0.46	(0.459,0.49]	chr10	550098	333	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr10	91206157	91206257	5932829	0	+	0.49	(0.459,0.49]	chr10	532030	427	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr10	95926869	95926969	6215481	0	-	0.48	(0.459,0.49]	chr10	555947	49	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr10	103177895	103177994	6243106	0	-	0.464646	(0.459,0.49]	chr10	558985	11	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000467380.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr11	31506462	31506562	6587447	0	-	0.47	(0.459,0.49]	chr11	599106	179	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr11	117083144	117083244	6751975	0	-	0.46	(0.459,0.49]	chr11	616028	1257	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr13	36978050	36978150	7489023	0	-	0.48	(0.459,0.49]	chr13	689582	18	INTRON	INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr13	72908881	72908981	7393292	0	+	0.46	(0.459,0.49]	chr13	683059	2	SS5_PROX	SS5_PROX:INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr14	34971152	34971248	7804914	0	-	0.479167	(0.459,0.49]	chr14	718551	15	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr14	39274841	39274940	7608120	0	+	0.484848	(0.459,0.49]	chr14	700012	70	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr14	63486248	63486348	7846005	0	-	0.48	(0.459,0.49]	chr14	722476	320	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr14	63876105	63876205	7649680	0	+	0.46	(0.459,0.49]	chr14	703888	22	INTRON	INTRON	SYNE2	ENSG00000054654.20	ENST00000674003.1:ENST00000344113.8:ENST00000358025.7:ENST00000341472.9:ENST00000555002.6	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr15	34144700	34144798	8123901	0	-	0.489796	(0.459,0.49]	chr15	751433	13	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000561270.5:ENST00000558681.1:ENST00000561371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr15	39998430	39998530	7946995	0	+	0.46	(0.459,0.49]	chr15	733955	3	SS3_PROX	SS3_PROX:INTRON	EIF2AK4	ENSG00000128829.12	ENST00000263791.10:ENST00000560855.5:ENST00000558629.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr15	41104619	41104718	8138455	0	-	0.484848	(0.459,0.49]	chr15	753133	79	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr15	55331519	55331617	7980882	0	+	0.479592	(0.459,0.49]	chr15	738301	13	INTRON	INTRON	PIGB	ENSG00000069943.10	ENST00000565367.5:ENST00000164305.10:ENST00000570059.1:ENST00000566999.5:ENST00000539642.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr15	67571902	67572001	8014879	0	+	0.464646	(0.459,0.49]	chr15	741148	82	INTRON	INTRON	MAP2K5	ENSG00000137764.20	ENST00000178640.10:ENST00000560591.5:ENST00000395476.6:ENST00000354498.9:ENST00000439036.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr16	3699243	3699342	8497235	0	-	0.474747	(0.459,0.49]	chr16	796592	79	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr16	15012943	15013042	8332103	0	+	0.474747	(0.459,0.49]	chr16	776202	28	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000567306.5:ENST00000450288.3:ENST00000561930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr16	29145496	29145595	8365262	0	+	0.474747	(0.459,0.49]	chr16	780407	53	INTRON	INTRON	ENSG00000260517	ENSG00000260517.3	ENST00000563477.1	lncRNA	lncRNA	lncRNA	lncRNA	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr16	74630187	74630280	8600785	0	-	0.473118	(0.459,0.49]	chr16	810649	12	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr17	2149473	2149573	8841938	0	-	0.48	(0.459,0.49]	chr17	844100	545	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr19	19022123	19022222	9459817	0	-	0.484848	(0.459,0.49]	chr19	930506	25	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr2	42500153	42500253	1002169	0	+	0.47	(0.459,0.49]	chr2	108883	45	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr2	233068387	233068487	1341537	0	+	0.48	(0.459,0.49]	chr2	138648	74	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr21	32739016	32739115	9858968	0	-	0.484848	(0.459,0.49]	chr21	978668	3	INTRON	INTRON	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000466846.5:ENST00000443785.5:ENST00000497873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr22	20494488	20494584	9991324	0	-	0.479167	(0.459,0.49]	chr22	994913	9	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr22	41476523	41476622	9953454	0	+	0.474747	(0.459,0.49]	chr22	990277	67	INTRON	INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr3	51146548	51146630	1876283	0	+	0.47561	(0.459,0.49]	chr3	190473	1	CDS	CDS:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr3	54963750	54963850	1892919	0	+	0.47	(0.459,0.49]	chr3	192499	635	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr3	125473405	125473504	2419689	0	-	0.474747	(0.459,0.49]	chr3	231929	35	INTRON	INTRON	SNX4	ENSG00000114520.11	ENST00000251775.9:ENST00000471751.5:ENST00000473417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr3	179422916	179423015	2502044	0	-	0.464646	(0.459,0.49]	chr3	239429	16	INTRON	INTRON	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6:ENST00000675901.1:ENST00000674927.1:ENST00000465153.2:ENST00000497513.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr5	37160307	37160404	3442139	0	-	0.474227	(0.459,0.49]	chr5	316573	16	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000509849.5:ENST00000514429.5:ENST00000510830.2:ENST00000511210.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr5	37355701	37355800	3443808	0	-	0.474747	(0.459,0.49]	chr5	316964	25	INTRON	INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr5	80689169	80689268	3232600	0	+	0.464646	(0.459,0.49]	chr5	298728	97	INTRON	INTRON	MSH3	ENSG00000113318.11	ENST00000265081.7:ENST00000670357.1:ENST00000667069.1:ENST00000658259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr5	139573793	139573893	3334219	0	+	0.49	(0.459,0.49]	chr5	306100	110	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr7	66765043	66765142	4402687	0	+	0.484848	(0.459,0.49]	chr7	396652	86	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr7	72953677	72953777	4729152	0	-	0.47	(0.459,0.49]	chr7	423994	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr7	152850827	152850927	4585112	0	+	0.49	(0.459,0.49]	chr7	413463	254	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr8	101188368	101188468	5234255	0	-	0.47	(0.459,0.49]	chr8	468361	96	INTRON	INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr9	4733670	4733770	5544974	0	-	0.46	(0.459,0.49]	chr9	499126	107	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chrX	16749689	16749788	10088220	0	+	0.484848	(0.459,0.49]	chrX	1006383	55	INTRON	INTRON	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chrX	72229924	72230024	10161839	0	+	0.49	(0.459,0.49]	chrX	1012911	317	INTRON	INTRON	PIN4	ENSG00000102309.15	ENST00000423432.6:ENST00000439980.7:ENST00000652108.2:ENST00000496835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.81712	4.044980000000001	4.27284	0.0120499	0.00227779	0.184357	0.0552099
chr12	47770856	47770948	7155049	0	-	0.576087	(0.57,0.629]	chr12	657155	1	UTR5	UTR5:EXON_MRNA	RAPGEF3	ENSG00000079337.16	ENST00000549151.5:ENST00000548919.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.91529	4.044855	4.17442	2.71799e-6	2.43299e-7	1.71473e-4	1.91066e-5
chr9	134760353	134760450	5524920	0	+	0.525773	(0.49,0.526]	chr9	496560	17	INTRON	INTRON	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.38426	4.04472	4.70518	7.26508e-6	1.2507e-8	4.19717e-4	1.25541e-6
chr11	46037673	46037773	6598144	0	-	0.3	[0,0.32]	chr11	600239	107	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	3.4411	4.044545	4.64799	9.57415e-4	2.00168e-6	0.0269423	1.30649e-4
chr1	149998457	149998557	761664	0	-	0.47	(0.459,0.49]	chr1	82558	205	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr11	77002901	77003001	6453674	0	+	0.49	(0.459,0.49]	chr11	582977	37	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9:ENST00000680351.1:ENST00000527508.2:ENST00000681258.1:ENST00000525325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr13	30629539	30629639	7342645	0	+	0.48	(0.459,0.49]	chr13	678746	73	INTRON	INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr16	2940784	2940880	8305503	0	+	0.46875	(0.459,0.49]	chr16	773277	3	INTRON	INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000344592.9:ENST00000570752.5:ENST00000574985.1:ENST00000571983.5:ENST00000575679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr16	68293231	68293328	8414692	0	+	0.484536	(0.459,0.49]	chr16	788165	12	INTRON	INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000567346.5:ENST00000563208.1:ENST00000562863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr16	74684085	74684185	8601301	0	-	0.46	(0.459,0.49]	chr16	810749	9	INTRON	INTRON	MLKL	ENSG00000168404.13	ENST00000308807.12:ENST00000306247.11:ENST00000571303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr16	74980512	74980611	8602609	0	-	0.484848	(0.459,0.49]	chr16	810948	15	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568323.5:ENST00000562331.5:ENST00000564859.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr16	87131433	87131532	8614919	0	-	0.474747	(0.459,0.49]	chr16	812570	472	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr17	64885386	64885485	8987800	0	-	0.484848	(0.459,0.49]	chr17	866392	85	INTRON	INTRON	LRRC37A3	ENSG00000176809.11	ENST00000584306.6:ENST00000339474.9:ENST00000400877.7:ENST00000319651.9:ENST00000581368.5:ENST00000584788.5:ENST00000580464.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr18	28078574	28078673	9203029	0	-	0.464646	(0.459,0.49]	chr18	886621	331	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr19	37715056	37715155	9491185	0	-	0.474747	(0.459,0.49]	chr19	934033	30	INTRON	INTRON	ZNF607	ENSG00000198182.13	ENST00000355202.9:ENST00000395835.7:ENST00000586559.5:ENST00000590670.1:ENST00000591664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr2	15605449	15605549	939836	0	+	0.48	(0.459,0.49]	chr2	103334	1	SS3_PROX	SS3_PROX:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr2	96629539	96629637	1514223	0	-	0.479592	(0.459,0.49]	chr2	157518	5	INTRON	INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr2	218221133	218221233	1312037	0	+	0.48	(0.459,0.49]	chr2	134877	32	INTRON	INTRON	ARPC2	ENSG00000163466.16	ENST00000420104.5:ENST00000489598.5:ENST00000491780.5:ENST00000420201.5:ENST00000315717.10:ENST00000478612.5:ENST00000480062.5:ENST00000414983.5:ENST00000295685.14:ENST00000465395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr20	32307714	32307814	9625660	0	+	0.49	(0.459,0.49]	chr20	950077	296	INTRON	INTRON	KIF3B	ENSG00000101350.8	ENST00000375712.4	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr20	35371592	35371692	9734067	0	-	0.48	(0.459,0.49]	chr20	963762	46	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr20	36116088	36116187	9639426	0	+	0.464646	(0.459,0.49]	chr20	951871	19	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr5	14447048	14447148	3124796	0	+	0.48	(0.459,0.49]	chr5	289383	53	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000515710.1:ENST00000639876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr5	43541117	43541216	3460456	0	-	0.484848	(0.459,0.49]	chr5	318244	17	INTRON	INTRON	PAIP1	ENSG00000172239.14	ENST00000306846.8:ENST00000436644.6:ENST00000338972.8:ENST00000514514.5:ENST00000504639.5:ENST00000511321.5:ENST00000508537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr5	126793712	126793812	3306529	0	+	0.49	(0.459,0.49]	chr5	303552	155	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr7	43697505	43697605	4707693	0	-	0.48	(0.459,0.49]	chr7	421525	314	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr7	73486609	73486708	4730202	0	-	0.474747	(0.459,0.49]	chr7	424180	77	INTRON	INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr7	135485187	135485287	4861163	0	-	0.49	(0.459,0.49]	chr7	435187	464	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr8	27389171	27389271	4956264	0	+	0.48	(0.459,0.49]	chr8	443937	80	INTRON	INTRON	PTK2B	ENSG00000120899.18	ENST00000397501.5:ENST00000522338.5:ENST00000521164.5:ENST00000346049.10:ENST00000420218.3:ENST00000522517.5:ENST00000412793.5:ENST00000496920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr9	77883763	77883863	5637391	0	-	0.47	(0.459,0.49]	chr9	505001	676	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr9	100142350	100142450	5450450	0	+	0.47	(0.459,0.49]	chr9	486785	100	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr9	127565028	127565127	5741750	0	-	0.464646	(0.459,0.49]	chr9	514440	34	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chrX	47164332	47164431	10123193	0	+	0.464646	(0.459,0.49]	chrX	1009176	165	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000345781.10:ENST00000628161.2:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	0	7	2	3.88247	4.044405	4.20634	0.0104144	0.00276656	0.170122	0.0641652
chr1	1875268	1875368	495633	0	-	0.52	(0.49,0.526]	chr1	53110	352	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	3.9433	4.043945	4.14459	5.12922e-7	2.30178e-8	3.78931e-5	2.18887e-6
chr11	9420186	9420278	6313384	0	+	0.586957	(0.57,0.629]	chr11	566557	4	SS3_PROX	SS3_PROX:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.51202	4.042795	4.57357	1.40194e-5	3.84418e-8	7.50732e-4	3.50528e-6
chr11	31543870	31543970	6361720	0	+	0.27	[0,0.32]	chr11	569876	20	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000474374.5:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638508.1:ENST00000638184.1:ENST00000640921.1:ENST00000638376.1:ENST00000638984.1:ENST00000640790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.61847	4.04252	4.46657	0.00288167	2.40709e-4	0.0662445	0.00878409
chr12	120893786	120893886	7302310	0	-	0.37	(0.36,0.392]	chr12	673987	583	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	12	44	2	3.10549	4.042415	4.97934	5.3574e-7	1e-12	3.93507e-5	1.73382e-10
chr19	45792400	45792485	9513872	0	-	0.847059	(0.629,1]	chr19	938584	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DMWD	ENSG00000185800.12	ENST00000270223.7:ENST00000377735.7:ENST00000601370.1:ENST00000598237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.39846	4.042045	4.68563	5.39652e-4	1.13329e-4	0.0171646	0.00463413
chr19	10499672	10499759	9434638	0	-	0.62069	(0.57,0.629]	chr19	925247	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KEAP1	ENSG00000079999.14	ENST00000171111.10:ENST00000393623.6:ENST00000585845.1:ENST00000592055.2:ENST00000591419.2:ENST00000591039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	497	3143	2	4.0014	4.042035	4.08267	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	48427331	48427431	7376570	0	+	0.52	(0.49,0.526]	chr13	681714	455	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	3.6944	4.041665	4.38893	1.37854e-10	1e-12	1.80251e-8	1.73382e-10
chr12	112011613	112011712	7282226	0	-	0.393939	(0.392,0.424]	chr12	671325	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000552839.6:ENST00000552800.2:ENST00000437003.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.97135	4.0413	5.11125	0.00130048	3.31137e-5	0.0347373	0.00159224
chr19	53090113	53090213	9536783	0	-	0.56	(0.526,0.57]	chr19	943002	34	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	3.23406	4.041	4.84794	6.50622e-5	2.85504e-5	0.00284455	0.00139623
chr9	95199382	95199482	5666329	0	-	0.57	(0.526,0.57]	chr9	507519	124	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000649334.1:ENST00000490972.7:ENST00000649701.1:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000649519.1:ENST00000650176.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	3.23406	4.041	4.84794	6.50622e-5	2.85504e-5	0.00284455	0.00139623
chr7	105758074	105758174	4802809	0	-	0.53	(0.526,0.57]	chr7	431297	666	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	3.79955	4.04075	4.28195	3.7695e-10	8.7147e-12	4.69561e-8	1.35017e-9
chr20	49660100	49660200	9762372	0	-	0.48	(0.459,0.49]	chr20	967487	30	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.7486	4.04039	5.33218	0.00700666	1.78412e-6	0.12393	1.1709e-4
chr10	12556955	12557055	5793569	0	+	0.54	(0.526,0.57]	chr10	521729	32	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	3.23242	4.04018	4.84794	3.23436e-4	6.50622e-5	0.0113067	0.00284455
chr6	7582837	7582935	3702997	0	+	0.418367	(0.392,0.424]	chr6	337021	3	CDS	CDS:EXON_MRNA	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8	protein_coding	protein_coding	protein_coding	protein_coding	69	237	2	3.7987	4.03929	4.27988	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	35413646	35413746	5836601	0	+	0.57	(0.526,0.57]	chr10	524506	184	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.69524	4.038825	4.38241	0.00101891	3.03531e-4	0.0276375	0.0107298
chr10	92098321	92098421	6203691	0	-	0.54	(0.526,0.57]	chr10	554691	60	INTRON	INTRON	CPEB3	ENSG00000107864.15	ENST00000265997.5:ENST00000412050.8:ENST00000614585.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.69524	4.038825	4.38241	0.00101891	3.03531e-4	0.0276375	0.0107298
chr1	28273166	28273257	88142	0	+	0.527473	(0.526,0.57]	chr1	9582	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.22891	4.038425	4.84794	0.00393565	6.50622e-5	0.0798064	0.00284455
chr14	102324793	102324892	7758127	0	+	0.555556	(0.526,0.57]	chr14	712385	44	INTRON	INTRON	ZNF839	ENSG00000022976.16	ENST00000558850.5:ENST00000559185.5:ENST00000442396.7:ENST00000559098.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.22891	4.038425	4.84794	0.00393565	6.50622e-5	0.0798064	0.00284455
chr5	178729478	178729573	3676827	0	-	0.557895	(0.526,0.57]	chr5	334736	2	SS3_PROX	SS3_PROX:INTRON	ZNF354A	ENSG00000169131.13	ENST00000335815.7:ENST00000518048.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.22891	4.038425	4.84794	0.00393565	6.50622e-5	0.0798064	0.00284455
chr1	53237764	53237860	620548	0	-	0.5625	(0.526,0.57]	chr1	69223	18	INTRON	INTRON	MAGOH	ENSG00000162385.11	ENST00000371470.8:ENST00000371466.4:ENST00000462941.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	3.62355	4.0381149999999995	4.45268	4.05302e-4	4.08411e-7	0.0135138	3.06417e-5
chr9	122929967	122930066	5724242	0	-	0.40404	(0.392,0.424]	chr9	513364	97	INTRON	INTRON	ZBTB26	ENSG00000171448.9	ENST00000373656.4:ENST00000373654.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.54297	4.03808	4.53319	1.67511e-5	1.61757e-6	8.60936e-4	1.08646e-4
chr1	237603008	237603107	470208	0	+	0.515152	(0.49,0.526]	chr1	50403	5	INTRON	INTRON	RYR2	ENSG00000198626.18	ENST00000366574.7	protein_coding	protein_coding	protein_coding	protein_coding	15	87	2	3.91725	4.03795	4.15865	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	181017124	181017224	1227130	0	+	0.52	(0.49,0.526]	chr2	128500	272	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	23	2	3.9433	4.037655	4.13201	8.48086e-6	5.12922e-7	4.76746e-4	3.78931e-5
chr13	75459277	75459377	7542851	0	-	0.38	(0.36,0.392]	chr13	693390	924	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.75844	4.037045	4.31565	6.393e-5	1.47786e-7	0.00282504	1.22253e-5
chrX	130207778	130207876	10429782	0	-	0.377551	(0.36,0.392]	chrX	1034598	20	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.10651	4.036845	4.96718	8.23373e-4	1.24104e-4	0.0238997	0.0049353
chr9	4576644	4576744	5543769	0	-	0.5	(0.49,0.526]	chr9	498995	219	INTRON	INTRON	SPATA6L	ENSG00000106686.17	ENST00000485616.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	300	1597	2	3.95603	4.036645	4.11726	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	35265209	35265307	9936806	0	+	0.520408	(0.49,0.526]	chr22	987285	5	CDS	CDS:UTR3:EXON_MRNA	HMGXB4	ENSG00000100281.14	ENST00000420166.5:ENST00000418170.5:ENST00000216106.6:ENST00000455359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	50	2	3.87277	4.03564	4.19851	1.00437e-10	1e-12	1.35407e-8	1.72912e-10
chr17	4295526	4295624	8851271	0	-	0.377551	(0.36,0.392]	chr17	845725	58	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	3.63053	4.034965	4.4394	1.09566e-6	2.8726e-8	7.63801e-5	2.70069e-6
chr11	108670293	108670392	6487628	0	+	0.555556	(0.526,0.57]	chr11	586622	46	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000693015.1:ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000688536.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000534774.1:ENST00000526794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.15803	4.033025	4.90802	0.00482649	4.81512e-5	0.0920354	0.00220626
chr11	119286955	119287054	6511916	0	+	0.464646	(0.459,0.49]	chr11	589795	10	INTRON	INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.85937	4.032855	4.20634	0.00276656	1.54766e-4	0.0641652	0.00599593
chr18	8206765	8206865	9051044	0	+	0.46	(0.459,0.49]	chr18	874804	626	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8:ENST00000577468.2:ENST00000577827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.85937	4.032855	4.20634	0.00276656	1.54766e-4	0.0641652	0.00599593
chr4	129072716	129072816	3012931	0	-	0.39	(0.36,0.392]	chr4	282022	283	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5:ENST00000511426.5:ENST00000503401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	34	2	3.51195	4.032835	4.55372	2.72313e-7	1e-12	2.13145e-5	1.72912e-10
chr3	123823816	123823916	2414277	0	-	0.54	(0.526,0.57]	chr3	231489	238	INTRON	INTRON	MYLK	ENSG00000065534.20	ENST00000360304.8:ENST00000360772.7:ENST00000693689.1:ENST00000464489.5:ENST00000346322.10:ENST00000690457.1:ENST00000687848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.97094	4.032795	5.09465	0.0014221	1.16684e-5	0.0370226	6.16746e-4
chr2	11287654	11287736	1381365	0	-	0.304878	[0,0.32]	chr2	143168	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	20	2	2.84133	4.032719999999999	5.22411	2.29438e-4	1.49849e-9	0.0083227	1.73006e-7
chr1	43366167	43366267	590533	0	-	0.55	(0.526,0.57]	chr1	66367	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	3.1573	4.03266	4.90802	4.45312e-4	4.81512e-5	0.0146627	0.00220626
chr1	1335467	1335563	492285	0	-	0.697917	(0.629,1]	chr1	52399	3	UTR3	UTR3:EXON_MRNA	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr12	122409733	122409833	7308324	0	-	0.64	(0.629,1]	chr12	674854	91	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr17	38851591	38851659	8923562	0	-	0.544118	(0.526,0.57]	chr17	856031	2	EXON_SMALL	EXON_SMALL:EXON_MRNA:INTRON	RPL23:SNORA21B	ENSG00000125691.14:ENSG00000252699.1	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1:ENST00000516890.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron	1	12	2	3.62355	4.03262	4.44169	8.21639e-4	4.05302e-4	0.0238903	0.0135138
chr17	79936996	79937095	9026222	0	-	0.656566	(0.629,1]	chr17	871572	48	UTR3	UTR3:EXON_MRNA	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000576768.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr21	45892079	45892179	9833617	0	+	0.69	(0.629,1]	chr21	975477	224	INTRON	INTRON	PCBP3	ENSG00000183570.17	ENST00000400314.5:ENST00000681687.1:ENST00000400310.5:ENST00000400308.5:ENST00000400309.5:ENST00000449640.5:ENST00000498121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr22	38871857	38871901	10039012	0	-	0.795455	(0.629,1]	chr22	1000896	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr7	79454241	79454340	4444288	0	+	0.676768	(0.629,1]	chr7	399830	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4:ENST00000612949.5:ENST00000619135.4:ENST00000655795.1:ENST00000669576.1:ENST00000435749.6:ENST00000414797.6:ENST00000667893.1:ENST00000451809.6:ENST00000664666.2:ENST00000667729.1:ENST00000654732.1:ENST00000611793.2:ENST00000612203.5:ENST00000663422.1:ENST00000683157.1:ENST00000448195.6:ENST00000660878.1:ENST00000667887.1:ENST00000424477.5:ENST00000422093.6:ENST00000618603.2:ENST00000653779.1:ENST00000617955.5:ENST00000666657.1:ENST00000614953.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr7	112205301	112205401	4824198	0	-	0.64	(0.629,1]	chr7	432278	2008	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.8818	4.03262	4.18344	0.0064023	0.00183228	0.114061	0.0469284
chr10	124676710	124676810	6282645	0	-	0.66	(0.629,1]	chr10	562241	89	INTRON	INTRON	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7:ENST00000280780.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr12	111842564	111842648	7024171	0	+	0.785714	(0.629,1]	chr12	642831	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547305.1:ENST00000553053.5:ENST00000546394.1:ENST00000551404.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr20	58891386	58891471	9683487	0	+	0.764706	(0.629,1]	chr20	956570	2	UTR5	UTR5:EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr22	39152444	39152522	10039351	0	-	0.923077	(0.629,1]	chr22	1000939	1	UTR5	UTR5:EXON_MRNA	CBX7	ENSG00000100307.13	ENST00000216133.10:ENST00000434260.1:ENST00000477827.1:ENST00000482294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr3	72996802	72996880	1920924	0	+	0.653846	(0.629,1]	chr3	194397	1	UTR5	UTR5:EXON_MRNA:INTRON	GXYLT2:PPP4R2	ENSG00000172986.13:ENSG00000163605.15	ENST00000491839.1:ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr7	101222409	101222506	4493354	0	+	0.639175	(0.629,1]	chr7	404846	22	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000461205.5:ENST00000492315.5:ENST00000485387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr9	134142919	134143019	5522275	0	+	0.64	(0.629,1]	chr9	496318	2	SS5_PROX	SS5_PROX:INTRON	WDR5	ENSG00000196363.10	ENST00000358625.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.9362	4.032315	4.12843	0.0052327	0.00233396	0.0992178	0.0563219
chr17	21026560	21026659	8894409	0	-	0.464646	(0.459,0.49]	chr17	851788	50	INTRON	INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.08436	4.032085	4.97981	0.00939464	3.36273e-5	0.161654	0.00159406
chr17	48940130	48940228	8959760	0	-	0.469388	(0.459,0.49]	chr17	861907	25	INTRON	INTRON	SNF8	ENSG00000159210.10	ENST00000502492.6:ENST00000510558.6:ENST00000509995.5:ENST00000290330.7:ENST00000573795.5:ENST00000576353.5:ENST00000514929.1:ENST00000507302.6:ENST00000512243.5:ENST00000515174.5:ENST00000510195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.08436	4.032085	4.97981	0.00939464	3.36273e-5	0.161654	0.00159406
chr8	144844909	144845004	5103949	0	+	0.547368	(0.526,0.57]	chr8	457686	13	INTRON	INTRON	ZNF7	ENSG00000147789.16	ENST00000525266.5:ENST00000325217.10	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	3.393	4.032005	4.67101	4.3065e-6	2.77771e-8	2.56035e-4	2.62893e-6
chr21	16336987	16337087	9788262	0	+	0.47	(0.459,0.49]	chr21	970602	59	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	3.64423	4.029765	4.4153	6.20842e-4	8.98032e-7	0.0191195	6.37943e-5
chr4	151324340	151324440	3059080	0	-	0.48	(0.459,0.49]	chr4	283919	582	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	3.222	4.0297	4.8374	4.59664e-6	7.08953e-9	2.71822e-4	7.39732e-7
chr19	7515706	7515806	9276561	0	+	0.48	(0.459,0.49]	chr19	895246	3	SS5_PROX	SS5_PROX:INTRON	ZNF358	ENSG00000198816.7	ENST00000596712.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.85282	4.02958	4.20634	0.00276656	2.77093e-6	0.0641652	1.73137e-4
chrX	77654097	77654148	10383814	0	-	0.372549	(0.36,0.392]	chrX	1030482	1	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	51	166	2	3.69228	4.02818	4.36408	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	67584133	67584169	6426480	0	+	0.583333	(0.57,0.629]	chr11	579547	1	CDS_START	CDS_START:CDS:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000489040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.95732	4.028125	5.09893	0.00848479	7.91825e-6	0.140721	4.54299e-4
chr1	86915999	86916099	224012	0	+	0.4	(0.392,0.424]	chr1	22668	2	SS5_PROX	SS5_PROX:INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	3.61326	4.027665	4.44207	5.82335e-6	5.58952e-6	3.40581e-4	3.2822e-4
chr12	57422441	57422541	7182144	0	-	0.48	(0.459,0.49]	chr12	663024	263	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.00648	4.027165	5.04785	0.0112903	2.39418e-5	0.181488	0.00119556
chr4	94536136	94536235	2688986	0	+	0.50505	(0.49,0.526]	chr4	256306	119	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	3.16684	4.026595	4.88635	0.00470616	1.46599e-9	0.0901733	1.70181e-7
chr16	84328039	84328138	8468065	0	+	0.606061	(0.57,0.629]	chr16	791748	12	EXON_MRNA	EXON_MRNA:INTRON	WFDC1	ENSG00000103175.11	ENST00000568638.1:ENST00000219454.10:ENST00000567056.1:ENST00000622779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	64	2	3.18917	4.0265450000000005	4.86392	7.48315e-9	1e-12	7.76209e-7	1.72912e-10
chr12	30662887	30662987	7132277	0	-	0.46	(0.459,0.49]	chr12	654942	4	SS3_PROX	SS3_PROX:INTRON	IPO8	ENSG00000133704.10	ENST00000256079.9:ENST00000544829.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.77994	4.02639	4.27284	0.00227779	2.14818e-4	0.0552099	0.00789628
chr4	25398293	25398393	2587271	0	+	0.48	(0.459,0.49]	chr4	248423	10	INTRON	INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000503805.5:ENST00000505842.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.77994	4.02639	4.27284	0.00227779	2.14818e-4	0.0552099	0.00789628
chr5	177048412	177048512	3399245	0	+	0.46	(0.459,0.49]	chr5	311917	35	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000504600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.77994	4.02639	4.27284	0.00227779	2.14818e-4	0.0552099	0.00789628
chr14	100267040	100267140	7751554	0	+	0.37	(0.36,0.392]	chr14	711640	42	INTRON	INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	54	2	3.52127	4.02411	4.52695	7.23943e-12	1e-12	1.13141e-9	1.73382e-10
chr1	43366123	43366167	590532	0	-	0.681818	(0.629,1]	chr1	66366	1	SS5_PROX	SS5_PROX:INTRON	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.15981	4.02405	4.88829	0.00188809	2.76563e-5	0.0466341	0.00135477
chr8	108292375	108292475	5246708	0	-	0.44	(0.424,0.459]	chr8	469267	236	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000677409.1:ENST00000677084.1:ENST00000677040.1:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676663.1:ENST00000679198.1:ENST00000678881.1:ENST00000676487.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	110	2	3.65053	4.023835	4.39714	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	19646452	19646552	6340681	0	+	0.51	(0.49,0.526]	chr11	568833	2951	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.76614	4.02378	5.28142	0.00430264	2.46593e-6	0.0867442	1.54892e-4
chr1	153762227	153762327	302929	0	+	0.45	(0.424,0.459]	chr1	32433	1	SS3_PROX	SS3_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000491790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr15	90533944	90534043	8080341	0	+	0.454545	(0.424,0.459]	chr15	747246	28	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr2	55208810	55208903	1450434	0	-	0.430108	(0.424,0.459]	chr2	150358	1	SS3_PROX	SS3_PROX:INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000411884.2:ENST00000487320.5:ENST00000466020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr4	108924682	108924781	2989357	0	-	0.444444	(0.424,0.459]	chr4	280058	37	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr6	129399625	129399724	3880931	0	+	0.454545	(0.424,0.459]	chr6	354613	38	INTRON	INTRON	LAMA2	ENSG00000196569.14	ENST00000421865.3:ENST00000618192.5:ENST00000617695.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr7	114965140	114965240	4516911	0	+	0.45	(0.424,0.459]	chr7	406855	224	INTRON	INTRON	MDFIC	ENSG00000135272.13	ENST00000393486.6:ENST00000431629.5:ENST00000427207.5:ENST00000498196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.64041	4.0232	4.40599	0.00154565	0.00115507	0.0389999	0.0316008
chr17	5431948	5432041	8637789	0	+	0.430108	(0.424,0.459]	chr17	816022	6	INTRON	INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000573126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.3314	4.02282	4.71424	0.00517898	3.07139e-4	0.0992178	0.0105767
chr19	37377323	37377422	9338441	0	+	0.454545	(0.424,0.459]	chr19	906409	27	INTRON	INTRON	ZNF527	ENSG00000189164.15	ENST00000589615.1:ENST00000436120.7:ENST00000483919.5:ENST00000588911.5:ENST00000588512.5:ENST00000356178.8:ENST00000587349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.3314	4.02282	4.71424	0.00517898	3.07139e-4	0.0992178	0.0105767
chrX	299531	299629	10067052	0	+	0.489796	(0.459,0.49]	chrX	1004599	3	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	3.53295	4.02275	4.51255	6.3564e-4	2.82514e-6	0.0193151	1.75466e-4
chr20	35505697	35505793	9636934	0	+	0.5	(0.49,0.526]	chr20	951526	3	INTRON	INTRON	CEP250	ENSG00000126001.16	ENST00000397527.6:ENST00000422671.1	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	3.76995	4.0222750000000005	4.2746	1.39677e-9	5.66969e-12	1.62555e-7	8.98882e-10
chr10	32056244	32056334	6101995	0	-	0.688889	(0.629,1]	chr10	546948	4	UTR5	UTR5:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.39846	4.020155	4.64185	5.39652e-4	1.36379e-9	0.0171646	1.57944e-7
chr10	31434757	31434857	5828592	0	+	0.35	(0.32,0.36]	chr10	523991	447	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr11	129181099	129181199	6777899	0	-	0.36	(0.32,0.36]	chr11	618734	163	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr14	21211709	21211809	7772808	0	-	0.36	(0.32,0.36]	chr14	714922	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555585.5:ENST00000554417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr2	181055193	181055293	1227511	0	+	0.34	(0.32,0.36]	chr2	128500	653	INTRON	INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602499.5:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr2	201405329	201405427	1670125	0	-	0.346939	(0.32,0.36]	chr2	171658	39	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr3	78781300	78781400	2350288	0	-	0.34	(0.32,0.36]	chr3	227137	340	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr4	165887146	165887246	2782784	0	+	0.35	(0.32,0.36]	chr4	263894	117	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr7	111452860	111452960	4818235	0	-	0.35	(0.32,0.36]	chr7	431941	601	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr9	19074726	19074824	5587025	0	-	0.346939	(0.32,0.36]	chr9	500804	41	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.70951	4.019515	4.32952	0.00388505	0.00201951	0.0816719	0.0510613
chr10	67958233	67958328	6150294	0	-	0.326316	(0.32,0.36]	chr10	550199	9	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.31131	4.018905	4.7265	0.0111187	6.12159e-4	0.179068	0.0189985
chr10	74374040	74374140	5896949	0	+	0.36	(0.32,0.36]	chr10	529763	344	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.31131	4.018905	4.7265	0.0111187	6.12159e-4	0.179068	0.0189985
chr2	173078101	173078201	1213966	0	+	0.34	(0.32,0.36]	chr2	127315	17	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.31131	4.018905	4.7265	0.0111187	6.12159e-4	0.179068	0.0189985
chr5	5453059	5453158	3112559	0	+	0.353535	(0.32,0.36]	chr5	288374	48	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.31131	4.018905	4.7265	0.0111187	6.12159e-4	0.179068	0.0189985
chr11	102176937	102177037	6479375	0	+	0.36	(0.32,0.36]	chr11	585360	140	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	59	2	3.82004	4.01851	4.21698	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	47492093	47492193	8953780	0	-	0.45	(0.424,0.459]	chr17	861279	3	SS5_PROX	SS5_PROX:INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7:ENST00000575291.5:ENST00000573318.1:ENST00000691039.1:ENST00000688561.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	9	2	3.23804	4.0175350000000005	4.79703	0.00649971	2.28148e-4	0.114061	0.00827964
chr5	59609592	59609692	3478347	0	-	0.45	(0.424,0.459]	chr5	319265	232	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.23804	4.0175350000000005	4.79703	0.00649971	2.28148e-4	0.114061	0.00827964
chr7	26187472	26187572	4661222	0	-	0.43	(0.424,0.459]	chr7	418772	18	INTRON	INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.23804	4.0175350000000005	4.79703	0.00649971	2.28148e-4	0.114061	0.00827964
chr8	130001777	130001877	5273936	0	-	0.43	(0.424,0.459]	chr8	471293	304	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.23804	4.0175350000000005	4.79703	0.00649971	2.28148e-4	0.114061	0.00827964
chr12	20369003	20369097	6842053	0	+	0.457447	(0.424,0.459]	chr12	625039	6	UTR5	UTR5:EXON_MRNA	PDE3A	ENSG00000172572.7	ENST00000359062.4	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	3.57634	4.01741	4.45848	3.8234e-6	5.48586e-9	2.3279e-4	5.79354e-7
chr17	60484668	60484768	8977534	0	-	0.44	(0.424,0.459]	chr17	864765	50	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000588668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.5463	4.01716	4.48802	0.00153741	0.00121831	0.0389999	0.0326347
chr19	40752673	40752772	9350761	0	+	0.454545	(0.424,0.459]	chr19	908586	8	INTRON	INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.5463	4.01716	4.48802	0.00153741	0.00121831	0.0389999	0.0326347
chr20	9463891	9463991	9576086	0	+	0.45	(0.424,0.459]	chr20	947561	37	INTRON	INTRON	PLCB4	ENSG00000101333.19	ENST00000378501.3:ENST00000378493.6:ENST00000685110.1:ENST00000687765.1:ENST00000688837.1:ENST00000686871.1:ENST00000685148.1:ENST00000414679.7:ENST00000688325.1:ENST00000693502.1:ENST00000693544.1:ENST00000693752.1:ENST00000687299.1:ENST00000685859.1:ENST00000686584.1:ENST00000689910.1:ENST00000685298.1:ENST00000378473.9:ENST00000690729.1:ENST00000691007.1:ENST00000686313.1:ENST00000684997.1:ENST00000687446.1:ENST00000686976.1:ENST00000685823.1:ENST00000686117.1:ENST00000685568.1:ENST00000692085.1:ENST00000690960.1:ENST00000693492.1:ENST00000689010.1:ENST00000686163.1:ENST00000693160.1:ENST00000691112.1:ENST00000686893.1:ENST00000685482.1:ENST00000686253.1:ENST00000692395.1:ENST00000693090.1:ENST00000693005.1:ENST00000685310.1:ENST00000688656.1:ENST00000278655.9:ENST00000492632.5:ENST00000689392.1:ENST00000464199.5:ENST00000473151.5:ENST00000482123.1:ENST00000687147.1:ENST00000688465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.5463	4.01716	4.48802	0.00153741	0.00121831	0.0389999	0.0326347
chr11	78131738	78131837	6662386	0	-	0.383838	(0.36,0.392]	chr11	611008	21	INTRON	INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	3.94713	4.01679	4.08645	1.23682e-4	1.25643e-5	0.0049353	6.61709e-4
chr3	51652473	51652573	1879986	0	+	0.43	(0.424,0.459]	chr3	190841	56	INTRON	INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5:ENST00000432863.1:ENST00000461680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	3.73279	4.01584	4.29889	1.78903e-5	1.12945e-5	9.13813e-4	6.02727e-4
chr11	73110735	73110835	6643664	0	-	0.36	(0.32,0.36]	chr11	608971	266	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	3.94493	4.01547	4.08601	8.63412e-7	6.8509e-8	6.08224e-5	6.01606e-6
chr19	38375258	38375342	9344203	0	+	0.47619	(0.459,0.49]	chr19	907040	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	3.81712	4.014670000000001	4.21222	0.0120499	9.25181e-6	0.184357	5.14007e-4
chr20	43526365	43526464	9654373	0	+	0.484848	(0.459,0.49]	chr20	953709	73	INTRON	INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.81712	4.014670000000001	4.21222	0.0120499	9.25181e-6	0.184357	5.14007e-4
chr22	50397025	50397124	9976952	0	+	0.474747	(0.459,0.49]	chr22	992685	25	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.81712	4.014670000000001	4.21222	0.0120499	9.25181e-6	0.184357	5.14007e-4
chrX	9620394	9620494	10078970	0	+	0.46	(0.459,0.49]	chrX	1005254	595	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	3.81712	4.014670000000001	4.21222	0.0120499	9.25181e-6	0.184357	5.14007e-4
chr3	188213944	188214044	2131602	0	+	0.43	(0.424,0.459]	chr3	209606	5	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	3.67696	4.01403	4.3511	2.06956e-6	1e-12	1.34728e-4	1.73382e-10
chr10	121479856	121479916	6274023	0	-	0.433333	(0.424,0.459]	chr10	561466	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000467584.1:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	52	2	4.01056	4.013975	4.01739	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	19136487	19136586	6337301	0	+	0.434343	(0.424,0.459]	chr11	568736	178	INTRON	INTRON	ZDHHC13	ENSG00000177054.14	ENST00000532026.5:ENST00000399351.7:ENST00000525490.5:ENST00000446113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	23	2	3.37907	4.01391	4.64875	2.98646e-4	2.48943e-10	0.0104901	3.17004e-8
chr1	157031014	157031114	783930	0	-	0.34	(0.32,0.36]	chr1	87318	445	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.59803	4.0138300000000005	4.42963	0.00312289	0.00267453	0.0697855	0.0637459
chr18	32105663	32105763	9088255	0	+	0.35	(0.32,0.36]	chr18	878317	124	INTRON	INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.59803	4.0138300000000005	4.42963	0.00312289	0.00267453	0.0697855	0.0637459
chr6	112079554	112079632	4170293	0	-	0.320513	(0.32,0.36]	chr6	379723	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TUBE1	ENSG00000074935.14	ENST00000368662.10:ENST00000604814.5:ENST00000605457.5:ENST00000604743.5:ENST00000441191.5:ENST00000604967.1:ENST00000368657.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.59803	4.0138300000000005	4.42963	0.00312289	0.00267453	0.0697855	0.0637459
chr7	43695007	43695107	4707668	0	-	0.35	(0.32,0.36]	chr7	421525	289	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.59803	4.0138300000000005	4.42963	0.00312289	0.00267453	0.0697855	0.0637459
chr8	39076551	39076639	4974270	0	+	0.340909	(0.32,0.36]	chr8	446055	3	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.59803	4.0138300000000005	4.42963	0.00312289	0.00267453	0.0697855	0.0637459
chr2	151464060	151464158	1174441	0	+	0.479592	(0.459,0.49]	chr2	124436	13	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	3.71677	4.013425	4.31008	3.08295e-10	1.05004e-11	3.88433e-8	1.61913e-9
chr7	86935345	86935444	4764943	0	-	0.50505	(0.49,0.526]	chr7	426724	81	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5:ENST00000423294.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	3.98392	4.010395	4.03687	3.07012e-5	1.09371e-9	0.00150487	1.28729e-7
chr2	218225319	218225419	1312079	0	+	0.38	(0.36,0.392]	chr2	134877	74	INTRON	INTRON	ARPC2	ENSG00000163466.16	ENST00000420104.5:ENST00000489598.5:ENST00000491780.5:ENST00000420201.5:ENST00000315717.10:ENST00000478612.5:ENST00000480062.5:ENST00000414983.5:ENST00000295685.14:ENST00000465395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.75844	4.009535	4.26063	0.00451705	6.393e-5	0.0875511	0.00282504
chr20	18142107	18142207	9604694	0	+	0.37	(0.36,0.392]	chr20	948279	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KAT14:PET117	ENSG00000149474.15:ENSG00000232838.4	ENST00000677174.1:ENST00000677573.1:ENST00000377681.8:ENST00000676992.1:ENST00000678777.1:ENST00000688188.1:ENST00000432901.4:ENST00000677266.1:ENST00000677610.1:ENST00000676935.1:ENST00000435364.8:ENST00000464792.2:ENST00000678772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.75844	4.009535	4.26063	0.00451705	6.393e-5	0.0875511	0.00282504
chr1	37912843	37912943	575309	0	-	0.41	(0.392,0.424]	chr1	64883	210	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr1	228098212	228098312	448308	0	+	0.4	(0.392,0.424]	chr1	48215	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000478424.5:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr12	68311047	68311147	7197525	0	-	0.4	(0.392,0.424]	chr12	664354	78	INTRON	INTRON	MDM1	ENSG00000111554.15	ENST00000682720.1:ENST00000303145.11:ENST00000540418.5:ENST00000411698.6:ENST00000536313.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr12	121408764	121408863	7035005	0	+	0.424242	(0.392,0.424]	chr12	644658	33	INTRON	INTRON	RNF34	ENSG00000170633.17	ENST00000613529.4:ENST00000361234.10:ENST00000392465.7:ENST00000556562.1:ENST00000553407.5:ENST00000554606.5:ENST00000392464.3:ENST00000555076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr17	28777349	28777449	8899684	0	-	0.41	(0.392,0.424]	chr17	852746	2	SS3_PROX	SS3_PROX:INTRON	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6:ENST00000579381.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr2	96636738	96636829	1514302	0	-	0.417582	(0.392,0.424]	chr2	157537	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1:ENST00000475820.1:ENST00000478492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr3	49411222	49411322	2275782	0	-	0.4	(0.392,0.424]	chr3	221277	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.47186	4.009435	4.54701	0.00366403	0.00102713	0.0766409	0.0276375
chr4	76523911	76524011	2650391	0	+	0.53	(0.526,0.57]	chr4	253366	873	INTRON	INTRON	SHROOM3	ENSG00000138771.16	ENST00000296043.7:ENST00000497440.5:ENST00000466541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	3.1573	4.0089500000000005	4.8606	4.45312e-4	1.86203e-9	0.0146627	2.12626e-7
chr6	165656420	165656519	4267298	0	-	0.585859	(0.57,0.629]	chr6	386862	12	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000539869.4:ENST00000647590.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	76	2	3.93891	4.008705	4.0785	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	149497629	149497723	4885018	0	-	0.819149	(0.629,1]	chr7	437228	2	UTR5	UTR5:EXON_MRNA	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1:ENST00000461958.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.05121	4.00806	4.96491	0.00356029	1.5112e-5	0.0753972	8.01855e-4
chr11	119002025	119002125	6509887	0	+	0.49	(0.459,0.49]	chr11	589327	2	SS5_PROX	SS5_PROX:INTRON	CENATAC	ENSG00000186166.9	ENST00000334418.6:ENST00000524670.5:ENST00000526463.5:ENST00000532132.5:ENST00000580556.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	3.88247	4.007395	4.13232	0.0104144	1.41387e-5	0.170122	7.54814e-4
chr8	23217378	23217478	5141762	0	-	0.48	(0.459,0.49]	chr8	460078	48	INTRON	INTRON	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1:ENST00000524158.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.88247	4.007395	4.13232	0.0104144	1.41387e-5	0.170122	7.54814e-4
chr14	75728768	75728867	7707103	0	+	0.484848	(0.459,0.49]	chr14	708491	77	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000555422.5:ENST00000554935.5:ENST00000554148.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	3.96686	4.00671	4.04656	5.54129e-5	3.80472e-5	0.00252909	0.00181622
chr6	78955981	78956080	4106777	0	-	0.30303	[0,0.32]	chr6	374299	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	18	2	3.5909	4.005965	4.42103	2.75424e-5	1.77666e-7	0.00135919	1.4379e-5
chr9	19236524	19236623	5357454	0	+	0.424242	(0.392,0.424]	chr9	478111	53	INTRON	INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000602708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.39796	4.005445	4.61293	0.00439831	8.49057e-4	0.0875511	0.0240064
chr5	1609720	1609820	3414794	0	-	0.45	(0.424,0.459]	chr5	314328	66	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	14	2	3.64041	4.0050349999999995	4.36966	0.00115507	3.96287e-6	0.0316008	2.39291e-4
chrX	24807877	24807977	10107100	0	+	0.41	(0.392,0.424]	chrX	1007715	130	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.15287	4.0047049999999995	4.85654	0.00224427	1.84333e-4	0.0552099	0.00688171
chr18	21412581	21412680	9072918	0	+	0.464646	(0.459,0.49]	chr18	876636	82	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10:ENST00000580732.6:ENST00000578368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	43	2	3.82049	4.00344	4.18639	2.37522e-10	1.76168e-11	3.06217e-8	2.62419e-9
chr15	92944915	92945015	8086907	0	+	0.33	(0.32,0.36]	chr15	747966	4	SS5_PROX	SS5_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000637572.1:ENST00000637613.1:ENST00000636881.1:ENST00000625243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	3.94516	4.003355	4.06155	1.2683e-5	7.26161e-6	6.82846e-4	4.19717e-4
chr21	16352872	16352972	9788422	0	+	0.41	(0.392,0.424]	chr21	970608	2	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	3.39796	4.003305	4.60865	0.00439831	1.06475e-6	0.0875511	7.43219e-5
chr15	51788457	51788556	7977607	0	+	0.434343	(0.424,0.459]	chr15	738022	36	INTRON	INTRON	TMOD2	ENSG00000128872.10	ENST00000249700.9:ENST00000539962.6:ENST00000435126.6:ENST00000561407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	13	2	2.8224	4.00314	5.18388	0.00212808	1.21594e-5	0.0533203	6.58699e-4
chr20	9462797	9462896	9576075	0	+	0.434343	(0.424,0.459]	chr20	947561	26	INTRON	INTRON	PLCB4	ENSG00000101333.19	ENST00000378501.3:ENST00000378493.6:ENST00000685110.1:ENST00000687765.1:ENST00000688837.1:ENST00000686871.1:ENST00000685148.1:ENST00000414679.7:ENST00000688325.1:ENST00000693502.1:ENST00000693544.1:ENST00000693752.1:ENST00000687299.1:ENST00000685859.1:ENST00000686584.1:ENST00000689910.1:ENST00000685298.1:ENST00000378473.9:ENST00000690729.1:ENST00000691007.1:ENST00000686313.1:ENST00000684997.1:ENST00000687446.1:ENST00000686976.1:ENST00000685823.1:ENST00000686117.1:ENST00000685568.1:ENST00000692085.1:ENST00000690960.1:ENST00000693492.1:ENST00000689010.1:ENST00000686163.1:ENST00000693160.1:ENST00000691112.1:ENST00000686893.1:ENST00000685482.1:ENST00000686253.1:ENST00000692395.1:ENST00000693090.1:ENST00000693005.1:ENST00000685310.1:ENST00000688656.1:ENST00000278655.9:ENST00000492632.5:ENST00000689392.1:ENST00000464199.5:ENST00000473151.5:ENST00000482123.1:ENST00000687147.1:ENST00000688465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	13	2	2.8224	4.00314	5.18388	0.00212808	1.21594e-5	0.0533203	6.58699e-4
chr3	138535312	138535409	2450161	0	-	0.402062	(0.392,0.424]	chr3	235172	24	INTRON	INTRON	CEP70	ENSG00000114107.9	ENST00000264982.8:ENST00000489254.5:ENST00000484888.5:ENST00000474781.5:ENST00000481834.5:ENST00000468900.5:ENST00000462419.5:ENST00000478673.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	3.82759	4.003105	4.17862	4.01331e-5	8.11656e-7	0.00187621	5.73396e-5
chr17	35832134	35832232	8704350	0	+	0.397959	(0.392,0.424]	chr17	824684	8	EXON_MRNA	EXON_MRNA:INTRON	TAF15	ENSG00000270647.7	ENST00000605844.6:ENST00000603777.6:ENST00000604694.2:ENST00000689923.1:ENST00000603393.6:ENST00000685897.1:ENST00000603427.6:ENST00000604879.6:ENST00000604841.5:ENST00000603067.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	3.47186	4.002525	4.53319	0.00366403	1.61757e-6	0.0766409	1.08646e-4
chr1	1308643	1308720	1822	0	+	0.61039	(0.57,0.629]	chr1	467	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PUSL1	ENSG00000169972.12	ENST00000379031.10:ENST00000470520.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.75803	4.00237	5.24671	0.0030545	2.15311e-6	0.0697796	1.3963e-4
chr9	133419515	133419614	5521063	0	+	0.636364	(0.629,1]	chr9	495946	45	INTRON	INTRON	ADAMTS13	ENSG00000160323.19	ENST00000485925.5	protein_coding	processed_transcript	protein_coding	processed_transcript	6	62	2	3.45255	4.00213	4.55171	3.22132e-9	1e-12	3.53904e-7	1.73382e-10
chr5	179620746	179620818	3679400	0	-	0.347222	(0.32,0.36]	chr5	334947	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000519958.5:ENST00000514731.5:ENST00000521173.5:ENST00000503105.5:ENST00000504779.6:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000522958.5:ENST00000521790.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519943.1:ENST00000519707.5:ENST00000519455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	10	2	2.96554	4.0015149999999995	5.03749	0.00254567	9.65678e-5	0.0610271	0.00399919
chr2	69143729	69143829	1064330	0	+	0.41	(0.392,0.424]	chr2	113074	87	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000303714.9:ENST00000409829.7:ENST00000409349.7:ENST00000681816.1:ENST00000679548.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.10951	4.001390000000001	4.89327	4.28069e-4	3.77123e-8	0.0141511	3.4456e-6
chr2	210649962	210650062	1296866	0	+	0.41	(0.392,0.424]	chr2	134216	2	SS3_PROX	SS3_PROX:INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	19	2	3.73536	3.999775	4.26419	3.4035e-5	2.06452e-7	0.0016098	1.64563e-5
chr13	51355528	51355627	7528072	0	-	0.414141	(0.392,0.424]	chr13	692408	8	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000476666.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	10	2	3.07609	3.999555	4.92302	0.00280132	1.45314e-4	0.0645347	0.00569484
chr7	116749582	116749681	4521354	0	+	0.424242	(0.392,0.424]	chr7	407121	82	INTRON	INTRON	MET	ENSG00000105976.16	ENST00000318493.11:ENST00000397752.8:ENST00000436117.2:ENST00000495962.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	3.07609	3.999555	4.92302	0.00280132	1.45314e-4	0.0645347	0.00569484
chr10	87142555	87142655	5925209	0	+	0.39	(0.36,0.392]	chr10	531085	452	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.91092	3.998685	4.08645	5.00165e-4	1.23682e-4	0.0160179	0.0049353
chr11	111657800	111657900	6492421	0	+	0.39	(0.36,0.392]	chr11	586972	370	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.91092	3.998685	4.08645	5.00165e-4	1.23682e-4	0.0160179	0.0049353
chr12	20478294	20478394	6843147	0	+	0.37	(0.36,0.392]	chr12	625044	1077	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	3.91092	3.998685	4.08645	5.00165e-4	1.23682e-4	0.0160179	0.0049353
chr7	47979309	47979409	4716127	0	-	0.75	(0.629,1]	chr7	422816	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HUS1	ENSG00000136273.13	ENST00000258774.10:ENST00000458191.5:ENST00000432325.5:ENST00000432627.5:ENST00000446009.1:ENST00000468868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.60202	3.9982300000000004	4.39444	6.41849e-4	1.20607e-4	0.0196462	0.00489816
chr9	128191511	128191589	5744776	0	-	0.782051	(0.629,1]	chr9	515114	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000634901.1:ENST00000476727.6:ENST00000467178.5:ENST00000324544.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.60202	3.9982300000000004	4.39444	6.41849e-4	1.20607e-4	0.0196462	0.00489816
chr20	41170452	41170543	9653376	0	+	0.450549	(0.424,0.459]	chr20	953470	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PLCG1	ENSG00000124181.15	ENST00000244007.7:ENST00000373271.5:ENST00000685551.1:ENST00000477870.5:ENST00000483175.5:ENST00000612731.2:ENST00000599785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	3.69974	3.998105	4.29647	9.50281e-7	2.88117e-10	6.73936e-5	3.64151e-8
chr1	15560329	15560429	53916	0	+	0.45	(0.424,0.459]	chr1	4998	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8:ENST00000483270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	3.47733	3.99794	4.51855	2.01844e-4	8.67885e-7	0.00755335	6.19626e-5
chr5	36154332	36154431	3148453	0	+	0.474747	(0.459,0.49]	chr5	290922	9	INTRON	INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000679283.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000677861.1:ENST00000504386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	3.63487	3.9978350000000002	4.3608	1.69661e-5	2.23014e-6	8.71289e-4	1.43671e-4
chr12	71663012	71663111	7210395	0	-	0.656566	(0.629,1]	chr12	665090	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1:ENST00000552037.1:ENST00000548100.1:ENST00000549407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	79	2	3.13476	3.9973899999999998	4.86002	5.42439e-11	1e-12	7.59458e-9	1.72912e-10
chr4	498855	498955	2813388	0	-	0.52	(0.49,0.526]	chr4	266119	4	SS5_PROX	SS5_PROX:INTRON	ZNF721	ENSG00000182903.16	ENST00000511833.3:ENST00000338977.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.9073	3.996115	4.08493	0.00395081	7.31994e-5	0.0816719	0.00316256
chr15	90609272	90609372	8081104	0	+	0.46	(0.459,0.49]	chr15	747288	14	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000692149.1:ENST00000687075.1:ENST00000561119.5:ENST00000558005.1:ENST00000561255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	3.85937	3.995845	4.13232	1.54766e-4	1.41387e-5	0.00599593	7.54814e-4
chr3	194476617	194476717	2522223	0	-	0.48	(0.459,0.49]	chr3	241530	85	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	3.85937	3.995845	4.13232	1.54766e-4	1.41387e-5	0.00599593	7.54814e-4
chr17	40266638	40266737	8714658	0	+	0.424242	(0.392,0.424]	chr17	826516	11	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	15	2	3.62464	3.995705	4.36677	1.11057e-4	8.10105e-6	0.00448562	4.57465e-4
chr1	35529500	35529600	569170	0	-	0.34	(0.32,0.36]	chr1	63944	220	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	25	2	3.59382	3.995405	4.39699	8.67854e-8	3.54969e-8	7.51259e-6	3.26918e-6
chr10	93702074	93702174	6209206	0	-	0.46	(0.459,0.49]	chr10	555345	3	SS5_PROX	SS5_PROX:INTRON	FRA10AC1	ENSG00000148690.12	ENST00000359204.5	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	3.60305	3.995045	4.38704	5.53598e-8	1.51757e-9	4.89622e-6	1.74447e-7
chr1	41238762	41238862	581404	0	-	0.35	(0.32,0.36]	chr1	65842	522	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	16	2	3.90902	3.99478	4.08054	5.03152e-4	1.61702e-7	0.0161742	1.33079e-5
chr11	116849783	116849882	6749607	0	-	0.40404	(0.392,0.424]	chr11	615909	1	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000488337.5:ENST00000375300.6:ENST00000465421.5:ENST00000446921.6:ENST00000415541.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	3.54722	3.9946450000000002	4.44207	1.52245e-4	5.58952e-6	0.0058275	3.2822e-4
chr2	54977249	54977348	1448691	0	-	0.424242	(0.392,0.424]	chr2	150245	21	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	3.54722	3.9946450000000002	4.44207	1.52245e-4	5.58952e-6	0.0058275	3.2822e-4
chr1	63425834	63425934	174784	0	+	0.44	(0.424,0.459]	chr1	19816	60	INTRON	INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1:ENST00000465969.5:ENST00000462390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.23804	3.9936849999999997	4.74933	0.00649971	9.96009e-8	0.114061	8.4812e-6
chr6	108367331	108367431	3843558	0	+	0.5	(0.49,0.526]	chr6	352082	6	INTRON	INTRON	AFG1L	ENSG00000135537.17	ENST00000368977.9:ENST00000421954.5:ENST00000431865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	3.72059	3.99345	4.26631	2.73826e-4	2.32598e-6	0.00975361	1.50793e-4
chr17	59838886	59838984	8758434	0	+	0.387755	(0.36,0.392]	chr17	833751	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	18	2	3.49505	3.993425	4.4918	5.09823e-6	4.36875e-6	3.04992e-4	2.58808e-4
chr20	1369879	1369979	9551886	0	+	0.47	(0.459,0.49]	chr20	945693	74	INTRON	INTRON	SDCBP2-AS1	ENSG00000234684.8	ENST00000609470.6:ENST00000670879.1:ENST00000609285.6:ENST00000446423.2:ENST00000653665.1	lncRNA	lncRNA	lncRNA	lncRNA	3	20	2	3.85282	3.9925699999999997	4.13232	1.41387e-5	2.77093e-6	7.54814e-4	1.73137e-4
chr8	125224877	125224977	5086335	0	+	0.36	(0.32,0.36]	chr8	455136	422	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.6551	3.99231	4.32952	0.00388505	2.11023e-4	0.0816719	0.00785
chr15	100978448	100978547	8103074	0	+	0.30303	[0,0.32]	chr15	749166	41	INTRON	INTRON	LRRK1	ENSG00000154237.13	ENST00000532029.6:ENST00000388948.8:ENST00000525284.5:ENST00000531270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	21	2	3.33567	3.99183	4.64799	2.00168e-6	3.02709e-7	1.30649e-4	2.32201e-5
chr16	22394581	22394681	8532371	0	-	0.37	(0.36,0.392]	chr16	801773	196	INTRON	INTRON	CDR2	ENSG00000140743.8	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	18	2	3.094	3.9914050000000003	4.88881	1.4895e-4	8.92448e-8	0.00574636	7.65609e-6
chr10	101653189	101653289	6237581	0	-	0.47	(0.459,0.49]	chr10	558169	264	INTRON	INTRON	FBXW4	ENSG00000107829.15	ENST00000331272.9:ENST00000664783.1:ENST00000457105.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	3.97601	3.9909549999999996	4.0059	7.08572e-7	3.28131e-7	5.07254e-5	2.53115e-5
chr5	61472180	61472280	3182789	0	+	0.47	(0.459,0.49]	chr5	293790	1	SS3_PROX	SS3_PROX:INTRON	ZSWIM6	ENSG00000130449.6	ENST00000252744.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.21669	3.99085	4.76501	5.63284e-4	1.46149e-4	0.0178211	0.00564049
chr8	138803334	138803434	5287255	0	-	0.48	(0.459,0.49]	chr8	472558	4	SS3_PROX	SS3_PROX:INTRON	COL22A1	ENSG00000169436.17	ENST00000303045.11:ENST00000435777.2	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.00155	3.99068	4.97981	0.00201907	3.36273e-5	0.0510613	0.00159406
chr4	141013514	141013614	3024091	0	-	0.38	(0.36,0.392]	chr4	282506	161	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.54131	3.990355	4.4394	3.17078e-4	2.8726e-8	0.0111061	2.70069e-6
chr7	44122786	44122886	4709209	0	-	0.38	(0.36,0.392]	chr7	421829	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000452185.5:ENST00000436844.5:ENST00000433715.5:ENST00000470867.5:ENST00000456038.5:ENST00000418438.1:ENST00000496539.1:ENST00000481763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	16	2	3.59498	3.98937	4.38376	1.64803e-5	1.28326e-5	8.48507e-4	6.90028e-4
chr5	171387778	171387863	3390675	0	+	0.611765	(0.57,0.629]	chr5	311055	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	3.60603	3.9885400000000004	4.37105	2.87788e-4	4.54233e-7	0.0101506	3.38977e-5
chr2	20292483	20292582	1390983	0	-	0.525253	(0.49,0.526]	chr2	144230	13	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.81887	3.9880050000000002	4.15714	0.00319561	1.1017e-4	0.0699484	0.00452792
chr3	141511063	141511163	2033429	0	+	0.44	(0.424,0.459]	chr3	203150	235	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000515549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	3.0068	3.987445	4.96809	0.00341471	6.10851e-5	0.0729529	0.0027377
chr2	190654878	190654977	1243721	0	+	0.40404	(0.392,0.424]	chr2	130309	7	INTRON	INTRON	NAB1	ENSG00000138386.17	ENST00000448811.1:ENST00000416973.1:ENST00000426601.1:ENST00000409581.5:ENST00000337386.10:ENST00000423376.1:ENST00000423076.1	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	3.61326	3.987265	4.36127	5.82335e-6	3.26182e-10	3.40581e-4	4.10167e-8
chr20	25469011	25469107	9720074	0	-	0.666667	(0.629,1]	chr20	962090	12	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.9362	3.986655	4.03711	0.0052327	2.83714e-6	0.0992178	1.78536e-4
chr5	40771963	40772063	3453656	0	-	0.41	(0.392,0.424]	chr5	317768	1	SS3_PROX	SS3_PROX:INTRON	PRKAA1	ENSG00000132356.12	ENST00000397128.7:ENST00000354209.7:ENST00000506652.5:ENST00000509874.5:ENST00000296800.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	3.7075	3.9858450000000003	4.26419	9.40427e-4	2.06452e-7	0.0266969	1.64563e-5
chr22	25354495	25354595	9997863	0	-	0.58	(0.57,0.629]	chr22	996037	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRP5L	ENSG00000100068.14	ENST00000467672.5:ENST00000444995.7:ENST00000650168.1:ENST00000402785.2:ENST00000650500.2:ENST00000474163.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	13	2	3.50295	3.9856100000000003	4.46827	6.5426e-4	5.2773e-4	0.0199608	0.0167673
chr18	7673380	7673480	9045687	0	+	0.3	[0,0.32]	chr18	874701	1051	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	2.92861	3.98546	5.04231	0.00282946	3.40623e-8	0.0650221	3.14246e-6
chr17	63832556	63832651	8981714	0	-	0.6	(0.57,0.629]	chr17	865498	6	UTR3	UTR3:EXON_MRNA	SMARCD2	ENSG00000108604.17	ENST00000448276.7:ENST00000323347.14:ENST00000225742.13:ENST00000450364.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.28948	3.9854000000000003	4.68132	0.00212278	1.50304e-4	0.0532704	0.00577248
chr15	44510624	44510724	7962725	0	+	0.34	(0.32,0.36]	chr15	736701	69	INTRON	INTRON	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	13	2	3.90902	3.985285	4.06155	5.03152e-4	7.26161e-6	0.0161742	4.19717e-4
chr4	122955565	122955665	2729407	0	+	0.35	(0.32,0.36]	chr4	259676	29	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000674886.1:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	3.90902	3.985285	4.06155	5.03152e-4	7.26161e-6	0.0161742	4.19717e-4
chr5	173020712	173020789	3393548	0	+	0.519481	(0.49,0.526]	chr5	311337	3	SS5_PROX	SS5_PROX:INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	19	108	2	3.70957	3.9851599999999996	4.26075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	45638214	45638314	600063	0	-	0.39	(0.36,0.392]	chr1	67347	26	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	14	47	2	3.66501	3.9849250000000005	4.3048400000000004	1.137e-11	1e-12	1.7487e-9	1.72912e-10
chr12	64027402	64027502	6934485	0	+	0.41	(0.392,0.424]	chr12	634638	100	INTRON	INTRON	SRGAP1	ENSG00000196935.10	ENST00000631006.3:ENST00000355086.8:ENST00000695902.1:ENST00000537556.1:ENST00000543397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	3.07609	3.98468	4.89327	0.00280132	3.77123e-8	0.0645347	3.4456e-6
chr1	50591853	50591952	610863	0	-	0.353535	(0.32,0.36]	chr1	68234	67	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.53935	3.98449	4.42963	0.00312289	3.19299e-4	0.0697855	0.010926
chr9	126833	126932	5533331	0	-	0.484848	(0.459,0.49]	chr9	498516	30	INTRON	INTRON	CBWD1	ENSG00000172785.19	ENST00000356521.9:ENST00000377400.8:ENST00000475990.5:ENST00000619157.4:ENST00000314367.14:ENST00000612045.4:ENST00000475411.5:ENST00000611457.4:ENST00000465014.6:ENST00000613508.4:ENST00000382447.8:ENST00000487575.6:ENST00000495302.5:ENST00000462513.5:ENST00000616944.4:ENST00000613355.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	34	2	3.85622	3.98276	4.1093	2.91058e-8	9.29923e-10	2.73209e-6	1.09893e-7
chr11	47751290	47751390	6606007	0	-	0.34	(0.32,0.36]	chr11	601547	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	83	2	3.60432	3.9825749999999998	4.36083	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	33584749	33584834	2231180	0	-	0.505882	(0.49,0.526]	chr3	215900	1	CDS	CDS:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000475576.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.4732	3.98121	5.48922	0.00197937	2.5213e-7	0.0505186	2.01203e-5
chr12	38810985	38811085	7140074	0	-	0.42	(0.392,0.424]	chr12	655703	343	INTRON	INTRON	CPNE8	ENSG00000139117.14	ENST00000331366.10:ENST00000360449.3:ENST00000550863.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.7075	3.9806100000000004	4.25372	9.40427e-4	2.90267e-5	0.0266969	0.00141183
chr9	70053585	70053685	5394467	0	+	0.4	(0.392,0.424]	chr9	481847	85	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.7075	3.9806100000000004	4.25372	9.40427e-4	2.90267e-5	0.0266969	0.00141183
chr22	45693578	45693676	9962125	0	+	0.44898	(0.424,0.459]	chr22	991635	1	INTRON	INTRON	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000640901.1:ENST00000498009.5:ENST00000470722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	2.90943	3.98041	5.05139	0.00449434	4.27641e-5	0.0875511	0.00199812
chr5	131343676	131343776	3315642	0	+	0.41	(0.392,0.424]	chr5	304078	272	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	3.78194	3.9802799999999996	4.17862	7.47402e-4	4.01331e-5	0.0225125	0.00187621
chr17	27294835	27294935	8680199	0	+	0.45	(0.424,0.459]	chr17	821312	4	SS5_PROX	SS5_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	11	2	3.16328	3.980155	4.79703	0.0011776	2.28148e-4	0.0313499	0.00827964
chr5	134335776	134335875	3602216	0	-	0.434343	(0.424,0.459]	chr5	327344	135	INTRON	INTRON	CDKL3	ENSG00000006837.12	ENST00000520693.5:ENST00000519312.5:ENST00000265334.9:ENST00000523054.5:ENST00000521118.5:ENST00000521755.1:ENST00000523832.1:ENST00000522501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.16328	3.980155	4.79703	0.0011776	2.28148e-4	0.0313499	0.00827964
chr8	70608343	70608416	5190899	0	-	0.657534	(0.629,1]	chr8	465203	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.99478	3.979845	4.96491	3.48758e-4	1.5112e-5	0.0121642	8.01855e-4
chr2	111313803	111313903	1543972	0	-	0.56	(0.526,0.57]	chr2	160117	201	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	3.88187	3.9797700000000003	4.07767	0.00403601	8.23795e-5	0.0817225	0.00351856
chr5	151473672	151473771	3359974	0	+	0.535354	(0.526,0.57]	chr5	309014	1	CDS	CDS:EXON_MRNA	SLC36A1	ENSG00000123643.13	ENST00000520701.5:ENST00000243389.8:ENST00000616007.4:ENST00000521925.5:ENST00000517628.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.88187	3.9797700000000003	4.07767	0.00403601	8.23795e-5	0.0817225	0.00351856
chr17	43116571	43116669	8937058	0	-	0.581633	(0.57,0.629]	chr17	858970	4	INTRON	INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.42043	3.977645	4.53486	9.02612e-4	3.95206e-4	0.0258498	0.0135724
chr7	100212206	100212299	4789303	0	-	0.591398	(0.57,0.629]	chr7	429375	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CASTOR3	ENSG00000239521.10	ENST00000649671.1:ENST00000543273.5:ENST00000328453.9:ENST00000440058.5:ENST00000437485.5:ENST00000454084.5:ENST00000435519.6:ENST00000445230.1:ENST00000414739.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	13	2	3.42043	3.977645	4.53486	9.02612e-4	3.95206e-4	0.0258498	0.0135724
chr10	45925866	45925966	6121941	0	-	0.42	(0.392,0.424]	chr10	548364	93	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	10	2	3.40795	3.97748	4.54701	0.00102713	5.07532e-4	0.0276375	0.0162102
chr11	65962393	65962493	6417718	0	+	0.4	(0.392,0.424]	chr11	577846	3	SS5_PROX	SS5_PROX:INTRON	SART1	ENSG00000175467.15	ENST00000529532.5:ENST00000532333.5:ENST00000530251.1:ENST00000528573.1:ENST00000312397.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.40795	3.97748	4.54701	0.00102713	5.07532e-4	0.0276375	0.0162102
chr3	136943683	136943783	2013487	0	+	0.41	(0.392,0.424]	chr3	202187	127	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.40795	3.97748	4.54701	0.00102713	5.07532e-4	0.0276375	0.0162102
chr5	138830428	138830528	3331858	0	+	0.4	(0.392,0.424]	chr5	305849	23	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	10	2	3.40795	3.97748	4.54701	0.00102713	5.07532e-4	0.0276375	0.0162102
chr2	69642940	69643040	1478892	0	-	0.69	(0.629,1]	chr2	152994	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1:ENST00000495239.1:ENST00000471775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	157	2	3.69991	3.977175	4.25444	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	179058732	179058832	364901	0	+	0.4	(0.392,0.424]	chr1	39385	37	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	2.84278	3.9770149999999997	5.11125	0.00949728	3.31137e-5	0.16275	0.00159224
chr8	140943074	140943174	5299858	0	-	0.41	(0.392,0.424]	chr8	473212	86	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	10	2	2.84278	3.9770149999999997	5.11125	0.00949728	3.31137e-5	0.16275	0.00159224
chr7	111400508	111400608	4817711	0	-	0.44	(0.424,0.459]	chr7	431941	77	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	3.57829	3.973975	4.36966	3.96287e-6	3.93383e-7	2.39291e-4	2.9597e-5
chr19	10194899	10194976	9433094	0	-	0.753247	(0.629,1]	chr19	924877	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	3.29146	3.9736	4.65574	8.69824e-7	1.50585e-9	6.20714e-5	1.73555e-7
chrX	1290509	1290609	10067565	0	+	0.39	(0.36,0.392]	chrX	1004671	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CSF2RA	ENSG00000198223.18	ENST00000498153.7:ENST00000381524.8:ENST00000381529.9:ENST00000696230.1:ENST00000493312.6:ENST00000412290.6:ENST00000432318.8:ENST00000494969.7:ENST00000381509.8:ENST00000355432.8:ENST00000355805.7:ENST00000486791.6:ENST00000381500.6:ENST00000475259.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	3.83113	3.97255	4.11397	6.41601e-4	2.41963e-6	0.0193935	1.5318e-4
chr7	69604456	69604556	4406755	0	+	0.42	(0.392,0.424]	chr7	396944	41	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	2.76656	3.97233	5.1781	0.0113141	2.48959e-5	0.181488	0.00122627
chr7	110788100	110788200	4811578	0	-	0.37	(0.36,0.392]	chr7	431911	1227	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	3.20352	3.9714	4.73928	0.0019364	5.12952e-7	0.0476694	3.78931e-5
chr10	73033353	73033452	6161483	0	-	0.363636	(0.36,0.392]	chr10	551522	26	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.28561	3.97117	4.65673	0.0015215	7.48315e-4	0.0397018	0.0220209
chr11	9688750	9688850	6314869	0	+	0.39	(0.36,0.392]	chr11	566843	241	INTRON	INTRON	SWAP70	ENSG00000133789.15	ENST00000318950.11:ENST00000447399.6:ENST00000526358.5:ENST00000531814.5:ENST00000524817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.28561	3.97117	4.65673	0.0015215	7.48315e-4	0.0397018	0.0220209
chr17	48100754	48100842	8955717	0	-	0.613636	(0.57,0.629]	chr17	861606	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5:ENST00000495350.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	3.46645	3.971155	4.47586	7.18507e-7	1.32384e-7	5.19319e-5	1.10534e-5
chr1	23060457	23060555	74790	0	+	0.367347	(0.36,0.392]	chr1	7422	9	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	2.97461	3.970895	4.96718	0.00698532	1.24104e-4	0.123839	0.0049353
chr16	15606705	15606804	8516551	0	-	0.50505	(0.49,0.526]	chr16	799492	7	INTRON	INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.82549	3.97081	5.11613	1.20726e-4	1.03252e-5	0.00489964	5.57702e-4
chr12	123512857	123512957	7314354	0	-	0.54	(0.526,0.57]	chr12	675727	1	SS5_PROX	SS5_PROX:INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	3.9318	3.970635	4.00947	3.12159e-9	1.44053e-9	3.43891e-7	1.67467e-7
chr2	216130874	216130930	1309141	0	+	0.410714	(0.392,0.424]	chr2	134597	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	15	2	3.40795	3.9705700000000004	4.53319	5.07532e-4	1.61757e-6	0.0162102	1.08646e-4
chr12	38698901	38699000	7138942	0	-	0.272727	[0,0.32]	chr12	655645	47	INTRON	INTRON	CPNE8	ENSG00000139117.14	ENST00000331366.10:ENST00000538596.6:ENST00000360449.3	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	3.69747	3.96961	4.24175	1.81106e-4	6.90565e-5	0.0069054	0.00300464
chrX	132392634	132392734	10434186	0	-	0.39	(0.36,0.392]	chrX	1034929	3	SS3_PROX	SS3_PROX:INTRON	MBNL3	ENSG00000076770.15	ENST00000394311.6:ENST00000538204.5:ENST00000370853.8:ENST00000370857.7:ENST00000370849.7:ENST00000370844.5:ENST00000370839.7:ENST00000436215.5:ENST00000421707.1:ENST00000473364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	3.75844	3.96936	4.18028	6.393e-5	7.51712e-7	0.00282504	5.41481e-5
chr19	43571911	43572011	9505763	0	-	0.53	(0.526,0.57]	chr19	937131	105	INTRON	INTRON	XRCC1	ENSG00000073050.12	ENST00000262887.10:ENST00000543982.5:ENST00000595789.5:ENST00000598165.5:ENST00000599693.5:ENST00000594107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	38	2	3.93247	3.9686649999999997	4.00486	5.11261e-9	9.12091e-10	5.43682e-7	1.08109e-7
chr11	27454129	27454229	6584329	0	-	0.4	(0.392,0.424]	chr11	598932	409	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr11	113838011	113838110	6745219	0	-	0.424242	(0.392,0.424]	chr11	615588	23	INTRON	INTRON	USP28	ENSG00000048028.11	ENST00000003302.8:ENST00000545540.5:ENST00000540438.5:ENST00000537706.5:ENST00000537642.1:ENST00000542033.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr12	112018893	112018983	7024853	0	+	0.4	(0.392,0.424]	chr12	642931	2	UTR5	UTR5:EXON_MRNA:INTRON	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000552052.1:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr17	73208538	73208637	9007449	0	-	0.414141	(0.392,0.424]	chr17	868548	13	UTR3	UTR3:EXON_MRNA	FAM104A	ENSG00000133193.13	ENST00000403627.7:ENST00000405159.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr19	3019873	3019971	9409498	0	-	0.418367	(0.392,0.424]	chr19	920105	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLE2	ENSG00000065717.15	ENST00000426948.6:ENST00000455444.6:ENST00000262953.11:ENST00000591529.5:ENST00000586422.5:ENST00000443826.7:ENST00000590536.5:ENST00000589364.5:ENST00000587217.5:ENST00000591457.5:ENST00000590101.5:ENST00000587137.5:ENST00000590183.5:ENST00000589291.1:ENST00000592584.1:ENST00000587770.5:ENST00000592305.5:ENST00000591720.1:ENST00000587893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr20	64261351	64261447	9689793	0	+	0.416667	(0.392,0.424]	chr20	958175	7	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609764.1:ENST00000610074.1:ENST00000608844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr4	129071917	129072017	3012923	0	-	0.4	(0.392,0.424]	chr4	282022	275	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6:ENST00000506368.5:ENST00000511426.5:ENST00000503401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr8	42439585	42439653	5162686	0	-	0.411765	(0.392,0.424]	chr8	462516	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5:ENST00000518660.5:ENST00000522401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr9	137796951	137797048	5531885	0	+	0.402062	(0.392,0.424]	chr9	498335	14	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000493484.5:ENST00000482340.5:ENST00000486164.5:ENST00000637277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.78194	3.9671649999999996	4.15239	0.00572894	7.47402e-4	0.105396	0.0225125
chr6	165912030	165912129	4269870	0	-	0.282828	[0,0.32]	chr6	386930	7	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000649362.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	29	2	3.4396	3.9671149999999997	4.49463	1.83564e-6	2.59681e-12	1.20418e-4	4.25038e-10
chr10	97400304	97400380	6221221	0	-	0.565789	(0.526,0.57]	chr10	556567	1	CDS	CDS:EXON_MRNA	RRP12	ENSG00000052749.14	ENST00000536831.5:ENST00000370992.9:ENST00000414986.5:ENST00000315563.10:ENST00000618765.1	protein_coding	protein_coding	protein_coding	protein_coding	95	487	2	3.73746	3.966125	4.19479	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	17671135	17671234	4013149	0	-	0.353535	(0.32,0.36]	chr6	363152	12	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.90902	3.965135	4.02125	5.03152e-4	3.53532e-4	0.0161742	0.0122629
chr7	7577370	7577469	4304130	0	+	0.333333	(0.32,0.36]	chr7	390179	28	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.90902	3.965135	4.02125	5.03152e-4	3.53532e-4	0.0161742	0.0122629
chr8	98579726	98579789	5225803	0	-	0.365079	(0.36,0.392]	chr8	467692	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000523159.5:ENST00000518165.5:ENST00000518627.5:ENST00000522924.1:ENST00000521649.5:ENST00000520053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	59	2	3.83662	3.964155	4.09169	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	120196872	120196934	7299412	0	-	0.612903	(0.57,0.629]	chr12	673565	1	CDS	CDS:UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	3.55646	3.9638549999999997	4.37125	3.507e-7	1.53435e-10	2.66915e-5	2.02733e-8
chr13	75649518	75649618	7395492	0	+	0.41	(0.392,0.424]	chr13	683227	124	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000533305.5:ENST00000377499.9:ENST00000377534.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	3.12871	3.9632899999999998	4.79787	6.81583e-5	6.13769e-11	0.00297642	8.52781e-9
chr15	62827306	62827406	8000359	0	+	0.42	(0.392,0.424]	chr15	739592	63	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000636159.2:ENST00000561311.5:ENST00000494733.5:ENST00000489129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.7075	3.9624550000000003	4.21741	0.00496616	9.40427e-4	0.0964485	0.0266969
chr2	135623930	135624030	1153714	0	+	0.4	(0.392,0.424]	chr2	123236	8	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1:ENST00000480793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.7075	3.9624550000000003	4.21741	0.00496616	9.40427e-4	0.0964485	0.0266969
chr3	17571613	17571713	2194870	0	-	0.41	(0.392,0.424]	chr3	214272	91	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.7075	3.9624550000000003	4.21741	0.00496616	9.40427e-4	0.0964485	0.0266969
chr18	47901601	47901701	9219075	0	-	0.31	[0,0.32]	chr18	888152	44	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.12911	3.9623749999999998	4.79564	0.00484145	5.01883e-4	0.0964485	0.0161742
chr1	151411224	151411324	766089	0	-	0.41	(0.392,0.424]	chr1	83575	2	SS5_PROX	SS5_PROX:INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	3.5367	3.962295	4.38789	9.9735e-7	4.13968e-8	7.00342e-5	3.74186e-6
chr3	8821123	8821223	2161602	0	-	0.47	(0.459,0.49]	chr3	211405	451	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.68952	3.962275	5.23503	0.00206127	5.25256e-6	0.0505307	3.11102e-4
chr7	76568214	76568314	4437648	0	+	0.44	(0.424,0.459]	chr7	399292	163	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	20	2	3.81341	3.96217	4.11093	5.36389e-5	2.32912e-7	0.00243585	1.87449e-5
chr5	59495279	59495379	3477200	0	-	0.4	(0.392,0.424]	chr5	319250	648	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.37639	3.9617	4.54701	0.00102713	7.3655e-5	0.0276375	0.00317841
chr1	200653051	200653150	832947	0	-	0.494949	(0.49,0.526]	chr1	92355	20	INTRON	INTRON	DDX59	ENSG00000118197.14	ENST00000447706.6:ENST00000331314.11:ENST00000429498.5:ENST00000433235.1:ENST00000453944.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	3.33171	3.96168	4.59165	1.30693e-4	8.79223e-8	0.00517526	7.5628e-6
chr17	43259957	43260057	8938061	0	-	0.53	(0.526,0.57]	chr17	859071	298	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	26	140	2	3.75291	3.96163	4.17035	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	151118056	151118156	296910	0	+	0.51	(0.49,0.526]	chr1	31676	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GABPB2	ENSG00000143458.12	ENST00000368918.8:ENST00000368916.1:ENST00000467551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	87	2	3.69693	3.96128	4.22563	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	18401754	18401839	8523024	0	-	0.835294	(0.629,1]	chr16	800200	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	17	2	3.39846	3.960575	4.52269	5.39652e-4	3.10525e-4	0.0171646	0.0106515
chr15	25073106	25073172	7927985	0	+	0.409091	(0.392,0.424]	chr15	731719	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1:ENST00000668953.1:ENST00000665819.1:ENST00000666606.1	lncRNA	lncRNA	lncRNA	lncRNA	7	28	2	3.65055	3.95986	4.26917	2.34553e-7	1.59208e-9	1.88437e-5	1.83363e-7
chr19	50489778	50489877	9378951	0	+	0.606061	(0.57,0.629]	chr19	914400	72	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.91804	3.9596850000000003	4.00133	2.83782e-5	1.78261e-5	0.0013972	9.13271e-4
chr3	197581924	197582024	2536039	0	-	0.58	(0.57,0.629]	chr3	243228	14	INTRON	INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	20	2	3.91804	3.9596850000000003	4.00133	2.83782e-5	1.78261e-5	0.0013972	9.13271e-4
chr7	34965897	34965996	4686303	0	-	0.474747	(0.459,0.49]	chr7	420249	75	INTRON	INTRON	DPY19L1	ENSG00000173852.16	ENST00000690503.1:ENST00000685246.1:ENST00000690666.1:ENST00000612226.2:ENST00000310974.8:ENST00000638088.2:ENST00000446375.1:ENST00000462134.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	3.40387	3.9582100000000002	4.51255	6.3564e-4	1.53229e-4	0.0193151	0.00595859
chr7	5640553	5640652	4617954	0	-	0.282828	[0,0.32]	chr7	415937	161	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000469375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.05093	3.958065	4.8652	0.00583312	4.11137e-4	0.107081	0.0138446
chr3	179234264	179234364	2114325	0	+	0.38	(0.36,0.392]	chr3	206866	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PIK3CA	ENSG00000121879.6	ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000675467.1:ENST00000674534.1:ENST00000674622.1:ENST00000462255.2:ENST00000675796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	76	2	3.83926	3.9577299999999997	4.0762	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	50632742	50632842	611273	0	-	0.37	(0.36,0.392]	chr1	68244	259	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	3.82871	3.95758	4.08645	1.23682e-4	1.70072e-6	0.0049353	1.11415e-4
chr11	46031176	46031276	6598079	0	-	0.39	(0.36,0.392]	chr11	600239	42	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	3.82871	3.95758	4.08645	1.23682e-4	1.70072e-6	0.0049353	1.11415e-4
chr7	43904420	43904520	4708356	0	-	0.5	(0.49,0.526]	chr7	421587	149	INTRON	INTRON	URGCP	ENSG00000106608.17	ENST00000497914.5:ENST00000443736.5:ENST00000402306.7:ENST00000453200.6:ENST00000439702.5:ENST00000426198.5:ENST00000455877.5:ENST00000446958.1:ENST00000477768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	3.82997	3.9574499999999997	4.08493	0.00395081	1.86335e-6	0.0816719	1.21822e-4
chr17	43253758	43253858	8937999	0	-	0.53	(0.526,0.57]	chr17	859071	236	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	35	184	2	3.93962	3.9564950000000003	3.97337	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	93156381	93156478	694614	0	-	0.360825	(0.36,0.392]	chr1	75255	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000483033.1:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	37	2	3.37708	3.955915	4.53475	5.30437e-8	1e-12	4.72329e-6	1.73382e-10
chr15	41238503	41238602	7949351	0	+	0.444444	(0.424,0.459]	chr15	734562	39	INTRON	INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	3.80014	3.955535	4.11093	3.54639e-4	5.36389e-5	0.0120332	0.00243585
chr8	85218002	85218070	5207394	0	-	0.455882	(0.424,0.459]	chr8	466244	1	INTRON	INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615697.4:ENST00000523281.5:ENST00000523245.1:ENST00000321777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.80014	3.955535	4.11093	3.54639e-4	5.36389e-5	0.0120332	0.00243585
chr10	12385495	12385595	5791853	0	+	0.35	(0.32,0.36]	chr10	521723	352	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	11	2	2.51516	3.95546	5.39576	0.0069482500000000004	9.86331e-6	0.121182	5.39872e-4
chr4	89745865	89745965	2957036	0	-	0.44	(0.424,0.459]	chr4	277910	162	INTRON	INTRON	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673766.1:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	3.89477	3.95535	4.01593	2.5121e-4	8.03177e-5	0.00902798	0.00342222
chr8	67050630	67050729	5185459	0	-	0.434343	(0.424,0.459]	chr8	464706	24	INTRON	INTRON	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	3.89477	3.95535	4.01593	2.5121e-4	8.03177e-5	0.00902798	0.00342222
chr11	111745594	111745692	6742241	0	-	0.44898	(0.424,0.459]	chr11	614908	17	INTRON	INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6:ENST00000529672.1:ENST00000531890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.89477	3.954115	4.01346	0.00778514	2.5121e-4	0.130982	0.00902798
chr14	69991816	69991916	7682962	0	+	0.45	(0.424,0.459]	chr14	706232	135	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.89477	3.954115	4.01346	0.00778514	2.5121e-4	0.130982	0.00902798
chr22	24285000	24285100	9908019	0	+	0.44	(0.424,0.459]	chr22	984230	78	INTRON	INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.89477	3.954115	4.01346	0.00778514	2.5121e-4	0.130982	0.00902798
chr3	121786307	121786406	2405485	0	-	0.444444	(0.424,0.459]	chr3	230572	41	INTRON	INTRON	IQCB1	ENSG00000173226.17	ENST00000310864.11:ENST00000393650.7:ENST00000349820.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.89477	3.954115	4.01346	0.00778514	2.5121e-4	0.130982	0.00902798
chr12	7111412	7111509	6814973	0	+	0.56701	(0.526,0.57]	chr12	622803	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	C1RL-AS1	ENSG00000205885.8	ENST00000435921.6:ENST00000541775.5:ENST00000535078.2:ENST00000382215.3	lncRNA	lncRNA	lncRNA	lncRNA	9	51	2	3.37201	3.9536749999999996	4.53534	2.30018e-9	1e-12	2.5781e-7	1.73382e-10
chr3	122569352	122569448	1966391	0	+	0.4375	(0.424,0.459]	chr3	198203	10	CDS	CDS:EXON_MRNA:INTRON	DTX3L	ENSG00000163840.10	ENST00000296161.9:ENST00000383661.3	protein_coding	protein_coding	protein_coding	protein_coding	10	43	2	3.66708	3.953315	4.23955	2.93273e-9	1e-12	3.24282e-7	1.72912e-10
chr9	92258755	92258853	5661300	0	-	0.591837	(0.57,0.629]	chr9	506730	21	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.03884	3.9528800000000004	4.86692	0.00676458	4.28317e-5	0.1204	0.0019752
chr15	25051473	25051568	7927753	0	+	0.410526	(0.392,0.424]	chr15	731655	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000552781.2:ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656959.1:ENST00000655965.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000547292.1:ENST00000657798.1:ENST00000655143.1	lncRNA	lncRNA	lncRNA	lncRNA	10	38	2	3.76104	3.952395	4.14375	2.28476e-9	2.28773e-12	2.57018e-7	3.78881e-10
chr11	47844068	47844167	6606883	0	-	0.363636	(0.36,0.392]	chr11	601756	31	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000694867.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.52068	3.9522199999999996	4.38376	0.00324516	1.64803e-5	0.0730386	8.48507e-4
chr15	65009473	65009572	8214970	0	-	0.373737	(0.36,0.392]	chr15	761905	29	INTRON	INTRON	MTFMT	ENSG00000103707.10	ENST00000220058.9:ENST00000558460.5:ENST00000560717.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	3.52068	3.9522199999999996	4.38376	0.00324516	1.64803e-5	0.0730386	8.48507e-4
chr3	136735106	136735205	2448565	0	-	0.515152	(0.49,0.526]	chr3	234921	1038	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	50	2	3.59479	3.952095	4.3094	1.50647e-11	6.23557e-12	2.28164e-9	9.87955e-10
chr1	162663758	162663858	321107	0	+	0.49	(0.459,0.49]	chr1	36312	80	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000671979.1:ENST00000415555.5:ENST00000672207.1:ENST00000673239.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr11	47574256	47574355	6394878	0	+	0.484848	(0.459,0.49]	chr11	573228	9	INTRON	INTRON	NDUFS3	ENSG00000213619.11	ENST00000533507.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr11	113838408	113838508	6745223	0	-	0.49	(0.459,0.49]	chr11	615588	27	INTRON	INTRON	USP28	ENSG00000048028.11	ENST00000003302.8:ENST00000545540.5:ENST00000540438.5:ENST00000537706.5:ENST00000537642.1:ENST00000542033.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr19	10189544	10189644	9433040	0	-	0.49	(0.459,0.49]	chr19	924870	51	INTRON	INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000586800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr3	101712501	101712601	1941962	0	+	0.48	(0.459,0.49]	chr3	195797	34	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PDCL3P4	ENSG00000244119.2	ENST00000685383.1:ENST00000489621.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr3	171678793	171678893	2495818	0	-	0.48	(0.459,0.49]	chr3	238903	7	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr4	26356907	26357007	2590120	0	+	0.46	(0.459,0.49]	chr4	248535	118	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.39129	3.9519200000000003	4.51255	0.00244536	6.3564e-4	0.0587626	0.0193151
chr4	41257020	41257114	2610147	0	+	0.606383	(0.57,0.629]	chr4	250013	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.91804	3.94936	3.98068	0.0053729	2.83782e-5	0.100211	0.0013972
chrM	3592	3688	10480418	0	+	0.46875	(0.459,0.49]	chrM	1038988	4	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	3.51124	3.94914	4.38704	2.0166e-7	1.51757e-9	1.61222e-5	1.74447e-7
chr12	20374042	20374142	6842104	0	+	0.28	[0,0.32]	chr12	625044	34	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	3.83585	3.9491199999999997	4.06239	3.10398e-4	4.6269e-5	0.0109114	0.00212902
chr15	43589381	43589481	8148246	0	-	0.49	(0.459,0.49]	chr15	754939	1	SS5_PROX	SS5_PROX:INTRON	PPIP5K1	ENSG00000168781.23	ENST00000334933.8:ENST00000360135.8:ENST00000360301.8:ENST00000420765.6:ENST00000381879.8:ENST00000488768.5:ENST00000453080.5:ENST00000417085.2:ENST00000429176.5:ENST00000431962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	91	2	3.8441	3.94903	4.05396	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	71509662	71509761	3208051	0	+	0.383838	(0.36,0.392]	chr5	296025	3	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	55	2	3.4342800000000002	3.9482600000000003	4.46224	2.13031e-11	1e-12	3.1203e-9	1.72912e-10
chr10	131954683	131954783	6024721	0	+	0.61	(0.57,0.629]	chr10	540566	65	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000490777.3:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr11	65544321	65544418	6625082	0	-	0.57732000000000006	(0.57,0.629]	chr11	605826	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	LTBP3	ENSG00000168056.18	ENST00000530866.6:ENST00000301873.11:ENST00000526825.6:ENST00000689505.1:ENST00000688764.1:ENST00000322147.8:ENST00000532932.5:ENST00000529189.5:ENST00000530785.5:ENST00000685178.1:ENST00000528516.5:ENST00000526927.6:ENST00000525443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr12	4273947	4274040	6807253	0	+	0.591398	(0.57,0.629]	chr12	621123	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr13	19746112	19746211	7457762	0	-	0.575758	(0.57,0.629]	chr13	687077	41	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr19	52785707	52785803	9534282	0	-	0.59375	(0.57,0.629]	chr19	942670	24	INTRON	INTRON	ZNF600	ENSG00000189190.11	ENST00000648893.1:ENST00000647907.1:ENST00000692063.1:ENST00000338230.3:ENST00000648973.1:ENST00000599893.1:ENST00000598369.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr20	63910282	63910382	9688571	0	+	0.58	(0.57,0.629]	chr20	957927	146	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr6	127476174	127476272	4187204	0	-	0.581633	(0.57,0.629]	chr6	381173	10	CDS	CDS:EXON_MRNA	SOGA3	ENSG00000214338.10	ENST00000525778.5:ENST00000465909.2	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr7	128840901	128840970	4541057	0	+	0.608696	(0.57,0.629]	chr7	408373	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	8	2	3.91553	3.948105	3.98068	0.00651627	0.0053729	0.114061	0.100211
chr11	12912312	12912412	6327294	0	+	0.5	(0.49,0.526]	chr11	567913	98	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr17	17322086	17322185	8663624	0	+	0.525253	(0.49,0.526]	chr17	819291	151	INTRON	INTRON	NT5M	ENSG00000205309.14	ENST00000616989.1:ENST00000478373.6:ENST00000389022.9:ENST00000470418.5:ENST00000483704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr5	37236087	37236185	3442938	0	-	0.5	(0.49,0.526]	chr5	316737	47	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000425232.7:ENST00000676290.1:ENST00000675547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr5	80629762	80629860	3522953	0	-	0.5	(0.49,0.526]	chr5	321947	2	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr5	131581504	131581604	3593693	0	-	0.5	(0.49,0.526]	chr5	326323	191	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000503398.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr7	107253772	107253871	4805259	0	-	0.50505	(0.49,0.526]	chr7	431498	3	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000468350.5:ENST00000462342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chrX	73846129	73846229	10373674	0	-	0.51	(0.49,0.526]	chrX	1029968	88	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	3.50606	3.9479050000000004	4.38975	0.0010102	9.92102e-4	0.0282228	0.0276375
chr12	20422120	20422220	6842585	0	+	0.5	(0.49,0.526]	chr12	625044	515	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.25397	3.9476199999999997	4.64127	0.00365962	2.4929e-4	0.0766409	0.0089494
chr17	47662688	47662788	8734439	0	+	0.51	(0.49,0.526]	chr17	830070	2	SS3_PROX	SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.25397	3.9476199999999997	4.64127	0.00365962	2.4929e-4	0.0766409	0.0089494
chr8	24917445	24917542	4949502	0	+	0.525773	(0.49,0.526]	chr8	443310	5	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NEFM	ENSG00000104722.14	ENST00000221166.10:ENST00000518131.5:ENST00000437366.2:ENST00000521540.1:ENST00000433454.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.25397	3.9476199999999997	4.64127	0.00365962	2.4929e-4	0.0766409	0.0089494
chr11	62837547	62837644	6617926	0	-	0.443299	(0.424,0.459]	chr11	604355	10	INTRON	INTRON	WDR74	ENSG00000133316.16	ENST00000278856.9:ENST00000311713.11:ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000542347.5:ENST00000541930.5:ENST00000540620.5:ENST00000545112.5:ENST00000453708.6:ENST00000538277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.80014	3.9472	4.09426	0.00651192	3.54639e-4	0.116758	0.0120332
chr15	98828440	98828540	8094817	0	+	0.44	(0.424,0.459]	chr15	748511	38	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.80014	3.9472	4.09426	0.00651192	3.54639e-4	0.116758	0.0120332
chr4	112655810	112655910	2714723	0	+	0.45	(0.424,0.459]	chr4	258289	3	SS5_PROX	SS5_PROX:INTRON	LARP7	ENSG00000174720.18	ENST00000692075.1:ENST00000512589.6:ENST00000694891.1:ENST00000509061.5:ENST00000509622.5:ENST00000689844.1:ENST00000344442.10:ENST00000692416.1:ENST00000511529.2:ENST00000505034.6:ENST00000694894.1:ENST00000692168.1:ENST00000693375.1:ENST00000694895.1:ENST00000684864.1:ENST00000693442.1:ENST00000505216.2:ENST00000694896.1:ENST00000694897.1:ENST00000694898.1:ENST00000694899.1:ENST00000694900.1:ENST00000651579.1:ENST00000694901.1:ENST00000688617.1:ENST00000685716.1:ENST00000685424.1:ENST00000503898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.80014	3.9472	4.09426	0.00651192	3.54639e-4	0.116758	0.0120332
chr6	110168889	110168988	4161996	0	-	0.444444	(0.424,0.459]	chr6	379082	78	INTRON	INTRON	WASF1	ENSG00000112290.13	ENST00000359451.6:ENST00000392588.5:ENST00000392586.5:ENST00000392587.6:ENST00000392589.6:ENST00000444391.5:ENST00000368938.5:ENST00000265601.7:ENST00000419252.1:ENST00000447287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.80014	3.9472	4.09426	0.00651192	3.54639e-4	0.116758	0.0120332
chrX	101027814	101027914	10395742	0	-	0.44	(0.424,0.459]	chrX	1031541	38	INTRON	INTRON	TRMT2B	ENSG00000188917.15	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.80014	3.9472	4.09426	0.00651192	3.54639e-4	0.116758	0.0120332
chr22	36771816	36771914	10031116	0	-	0.561224	(0.526,0.57]	chr22	999416	34	INTRON	INTRON	IFT27	ENSG00000100360.15	ENST00000340630.9:ENST00000471809.5:ENST00000433985.7:ENST00000417951.6:ENST00000430701.5:ENST00000465023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	3.04579	3.9468650000000003	4.84794	0.00107756	6.50622e-5	0.0299955	0.00284455
chr1	50545417	50545517	610393	0	-	0.49	(0.459,0.49]	chr1	68210	53	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.31269	3.946225	4.57976	0.00308309	4.98571e-4	0.0699986	0.0160179
chr15	57076009	57076109	7984885	0	+	0.48	(0.459,0.49]	chr15	738479	29	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000569880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.31269	3.946225	4.57976	0.00308309	4.98571e-4	0.0699986	0.0160179
chr1	204640535	204640635	843370	0	-	0.59	(0.57,0.629]	chr1	93811	69	INTRON	INTRON	LRRN2	ENSG00000170382.12	ENST00000367177.4:ENST00000367176.7:ENST00000496057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.95732	3.945785	4.93425	0.00848479	2.91369e-5	0.140721	0.00141183
chr20	36050919	36051018	9736347	0	-	0.626263	(0.57,0.629]	chr20	964279	55	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.95732	3.945785	4.93425	0.00848479	2.91369e-5	0.140721	0.00141183
chr7	102640514	102640611	4793837	0	-	0.628866	(0.57,0.629]	chr7	430528	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UPK3BL1	ENSG00000267368.1	ENST00000340457.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.95732	3.945785	4.93425	0.00848479	2.91369e-5	0.140721	0.00141183
chr1	158014127	158014227	311658	0	+	0.53	(0.526,0.57]	chr1	34672	200	INTRON	INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	3.91653	3.94574	3.97495	3.21576e-5	6.19964e-7	0.00156852	4.49218e-5
chr4	4416759	4416855	2823803	0	-	0.5625	(0.526,0.57]	chr4	267806	2	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	3.91653	3.94574	3.97495	3.21576e-5	6.19964e-7	0.00156852	4.49218e-5
chr3	172694763	172694863	2498013	0	-	0.44	(0.424,0.459]	chr3	239091	463	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	54	2	3.72432	3.9455549999999997	4.16679	4.32435e-11	1e-12	6.10893e-9	1.72912e-10
chr13	72898243	72898343	7393184	0	+	0.41	(0.392,0.424]	chr13	683053	39	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	3.35758	3.945385	4.53319	1.10011e-5	1.61757e-6	5.91284e-4	1.08646e-4
chr14	75438919	75439018	7704951	0	+	0.666667	(0.629,1]	chr14	708294	4	INTRON	INTRON	JDP2	ENSG00000140044.13	ENST00000419727.6:ENST00000559773.5:ENST00000651602.1:ENST00000559060.5:ENST00000558068.1:ENST00000437176.5:ENST00000435893.6:ENST00000267569.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	3.85365	3.94538	4.03711	2.83714e-6	2.45503e-10	1.78536e-4	3.13618e-8
chr1	226407929	226408014	872785	0	-	0.705882	(0.629,1]	chr1	97319	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000366792.3:ENST00000366790.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.63461	3.94506	5.25551	0.0028169	1.19594e-6	0.0647686	8.2089e-5
chr7	76568114	76568214	4437647	0	+	0.32	[0,0.32]	chr7	399292	162	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1:ENST00000423084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	15	2	3.61847	3.94487	4.27127	2.40709e-4	1.03327e-6	0.00878409	7.23599e-5
chr2	171038361	171038461	1609125	0	-	0.23	[0,0.32]	chr2	166598	96	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	15	2	3.69747	3.94459	4.19171	1.81106e-4	1.59164e-6	0.0069054	1.07558e-4
chr12	104342843	104342942	7003383	0	+	0.545455	(0.526,0.57]	chr12	640273	32	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	2.85481	3.94456	5.03431	2.35719e-5	1.64566e-5	0.00119414	8.48927e-4
chr19	15611749	15611842	9297950	0	+	0.569892	(0.526,0.57]	chr19	899569	2	EXON_PSEUDO	EXON_PSEUDO	RPL23AP2	ENSG00000225067.4	ENST00000471227.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	189	949	2	3.84643	3.942685	4.03894	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	41257608	41257672	2610154	0	+	0.734375	(0.629,1]	chr4	250016	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.54506	3.942025	4.33899	8.51164e-4	2.07184e-4	0.0245129	0.00773072
chr22	37877373	37877473	9941884	0	+	0.47	(0.459,0.49]	chr22	988544	3	SS3_PROX	SS3_PROX:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	3.12648	3.94169	4.7569	1.31261e-4	1.37759e-8	0.00527452	1.37123e-6
chr10	121836017	121836117	6276535	0	-	0.45	(0.424,0.459]	chr10	561646	454	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1:ENST00000485281.2:ENST00000692087.1:ENST00000690415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	3.47733	3.9416599999999997	4.40599	0.00154565	2.01844e-4	0.0389999	0.00755335
chr11	46998501	46998601	6391818	0	+	0.35	(0.32,0.36]	chr11	572753	65	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000522712.6:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	11	2	3.31131	3.9409150000000004	4.57052	0.0111187	2.95142e-6	0.179068	1.84947e-4
chr17	46175430	46175529	8949161	0	-	0.50505	(0.49,0.526]	chr17	860879	28	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.16684	3.9408649999999996	4.71489	0.00470616	1.81396e-4	0.0901733	0.0069054
chr2	232249646	232249746	1337660	0	+	0.51	(0.49,0.526]	chr2	138214	3	SS5_PROX	SS5_PROX:INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000445090.5:ENST00000325385.12:ENST00000433430.5:ENST00000498319.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.16684	3.9408649999999996	4.71489	0.00470616	1.81396e-4	0.0901733	0.0069054
chr5	172656209	172656309	3391472	0	+	0.5	(0.49,0.526]	chr5	311146	144	INTRON	INTRON	NEURL1B	ENSG00000214357.9	ENST00000369800.6:ENST00000520919.5:ENST00000522853.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.16684	3.9408649999999996	4.71489	0.00470616	1.81396e-4	0.0901733	0.0069054
chr7	102117663	102117763	4496413	0	+	0.51	(0.49,0.526]	chr7	404928	20	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5:ENST00000465461.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.16684	3.9408649999999996	4.71489	0.00470616	1.81396e-4	0.0901733	0.0069054
chr6	71412860	71412960	4100550	0	-	0.39	(0.36,0.392]	chr6	373578	51	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00472	ENSG00000233237.8	ENST00000651778.1:ENST00000413945.6:ENST00000436803.6:ENST00000650942.1:ENST00000625013.2:ENST00000652370.1:ENST00000652523.1:ENST00000651660.1	lncRNA	lncRNA	lncRNA	lncRNA	7	24	2	3.13886	3.940705	4.74255	2.09336e-5	5.25886e-10	0.00104621	6.43194e-8
chr1	169865800	169865899	801456	0	-	0.50505	(0.49,0.526]	chr1	89407	9	INTRON	INTRON	SCYL3	ENSG00000000457.14	ENST00000367771.11:ENST00000367772.8:ENST00000367770.5:ENST00000423670.1:ENST00000470238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.41836	3.9405799999999997	4.4628	0.00136895	7.611e-4	0.0359623	0.0225125
chr2	25834938	25835037	1404843	0	-	0.515152	(0.49,0.526]	chr2	145640	42	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.41836	3.9405799999999997	4.4628	0.00136895	7.611e-4	0.0359623	0.0225125
chr11	47057516	47057616	6392415	0	+	0.47	(0.459,0.49]	chr11	572776	46	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	3.0419	3.93965	4.8374	1.95784e-4	7.08953e-9	0.00725539	7.39732e-7
chr8	19652508	19652608	5132562	0	-	0.42	(0.392,0.424]	chr8	459342	106	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000695900.1:ENST00000523262.5:ENST00000517494.1:ENST00000524213.5:ENST00000523227.5:ENST00000522573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	21	2	3.61326	3.938725	4.26419	5.82335e-6	2.06452e-7	3.40581e-4	1.64563e-5
chrX	67711593	67711689	10148181	0	+	0.572917	(0.57,0.629]	chrX	1011574	3	CDS	CDS:UTR3:EXON_MRNA	AR	ENSG00000169083.18	ENST00000612452.5:ENST00000374690.9:ENST00000396044.8:ENST00000396043.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	3.19526	3.9382900000000003	4.68132	2.48707e-4	1.50304e-4	0.0089842	0.00577248
chr16	1964525	1964625	8492224	0	-	0.75	(0.629,1]	chr16	795435	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000529806.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	111	2	3.74009	3.93781	4.13553	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	40501988	40502088	578603	0	-	0.36	(0.32,0.36]	chr1	65640	79	INTRON	INTRON	EXO5-DT	ENSG00000238287.1	ENST00000450713.1	lncRNA	lncRNA	lncRNA	lncRNA	2	10	2	3.70951	3.93711	4.16471	0.00201951	9.22891e-5	0.0510613	0.00388567
chr15	87933011	87933097	8266654	0	-	0.488372	(0.459,0.49]	chr15	767665	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NTRK3	ENSG00000140538.17	ENST00000394480.6:ENST00000629765.3:ENST00000357724.6:ENST00000626019.2:ENST00000557856.5:ENST00000695462.1:ENST00000558576.5:ENST00000542733.6:ENST00000558676.5:ENST00000559680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	63	2	3.88519	3.9370450000000003	3.9889	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	48428131	48428231	7376578	0	+	0.49	(0.459,0.49]	chr13	681714	463	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	3.24233	3.93589	4.62945	3.74549e-7	4.09469e-11	2.86917e-5	5.774e-9
chr9	135908625	135908706	5526496	0	+	0.382716	(0.36,0.392]	chr9	496968	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CAMSAP1-DT	ENSG00000238058.2	ENST00000423793.1:ENST00000651515.1	lncRNA	lncRNA	lncRNA	lncRNA	5	23	2	3.20352	3.935145	4.66677	0.0019364	3.30891e-12	0.0476694	5.37234e-10
chr14	75768554	75768653	7707515	0	+	0.434343	(0.424,0.459]	chr14	708559	18	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000555422.5:ENST00000556893.5:ENST00000554510.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	3.66528	3.934445	4.20361	4.70625e-5	1.79381e-5	0.00217308	9.13813e-4
chr22	28484468	28484568	10006148	0	-	0.43	(0.424,0.459]	chr22	996542	415	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	3.66528	3.934445	4.20361	4.70625e-5	1.79381e-5	0.00217308	9.13813e-4
chrX	109688322	109688421	10406111	0	-	0.444444	(0.424,0.459]	chrX	1032653	25	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	3.66528	3.934445	4.20361	4.70625e-5	1.79381e-5	0.00217308	9.13813e-4
chr17	38706141	38706241	8709473	0	+	0.56	(0.526,0.57]	chr17	825370	4	SS5_PROX	SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000620609.4:ENST00000620482.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	3.23242	3.9331449999999997	4.63387	3.23436e-4	2.57391e-4	0.0113067	0.00911512
chr5	95960476	95960576	3552388	0	-	0.56	(0.526,0.57]	chr5	323481	171	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000635633.1:ENST00000515020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.36841	3.932565	5.49672	0.00295916	1e-12	0.0677262	1.72912e-10
chr1	212858274	212858363	426562	0	+	0.696629	(0.629,1]	chr1	46007	1	UTR5	UTR5:EXON_MRNA	FLVCR1	ENSG00000162769.13	ENST00000366971.9	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.31701	3.93249	5.54797	0.0035501	5.19015e-8	0.0776459	4.6354e-6
chr21	46098111	46098173	9834427	0	+	0.774194	(0.629,1]	chr21	975710	1	UTR5	UTR5:EXON_MRNA	COL6A2	ENSG00000142173.16	ENST00000300527.9:ENST00000310645.9	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.9761	3.932195	4.88829	0.00463564	2.76563e-5	0.089408	0.00135477
chr9	137753193	137753289	5531431	0	+	0.604167	(0.57,0.629]	chr9	498257	4	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5:ENST00000640639.1:ENST00000629808.2:ENST00000462942.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	3.60603	3.9320250000000003	4.25802	2.87788e-4	1.55189e-6	0.0101506	1.02479e-4
chrX	96706476	96706576	10174196	0	+	0.46	(0.459,0.49]	chrX	1013675	209	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.81712	3.9318400000000002	4.04656	0.0120499	3.80472e-5	0.184357	0.00181622
chr18	36067490	36067576	9212449	0	-	0.686047	(0.629,1]	chr18	887278	2	UTR5	UTR5:EXON_MRNA	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	17	2	3.46913	3.931785	4.39444	6.41849e-4	3.04018e-4	0.0196462	0.0105767
chr1	1878767	1878867	495668	0	-	0.51	(0.49,0.526]	chr1	53110	387	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	3.16666	3.9316899999999997	4.69672	4.28046e-4	2.25376e-8	0.0141511	2.16877e-6
chr20	38424398	38424496	9742798	0	-	0.520408	(0.49,0.526]	chr20	965211	3	INTRON	INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	22	2	3.16666	3.9316899999999997	4.69672	4.28046e-4	2.25376e-8	0.0141511	2.16877e-6
chr6	31114891	31114991	3753595	0	+	0.57	(0.526,0.57]	chr6	341177	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSORS1C1	ENSG00000204540.11	ENST00000467107.1:ENST00000548049.1:ENST00000259881.10:ENST00000493289.1:ENST00000479581.5:ENST00000550838.1:ENST00000552747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.48083	3.93162	4.38241	0.00110295	0.00101891	0.0304129	0.0276375
chr7	144331989	144332089	4878079	0	-	0.54	(0.526,0.57]	chr7	436741	127	INTRON	INTRON	OR2A1-AS1	ENSG00000244479.7	ENST00000493539.1:ENST00000496968.5:ENST00000467944.5:ENST00000486094.5:ENST00000475089.5:ENST00000488041.5:ENST00000478925.5	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	3.48083	3.93162	4.38241	0.00110295	0.00101891	0.0304129	0.0276375
chr1	21133003	21133103	537326	0	-	0.54	(0.526,0.57]	chr1	59083	200	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	3.22891	3.93139	4.63387	0.00393565	2.57391e-4	0.0798064	0.00911512
chr3	124632513	124632608	1977324	0	+	0.557895	(0.526,0.57]	chr3	198949	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KALRN	ENSG00000160145.16	ENST00000682506.1:ENST00000683592.1:ENST00000360013.7:ENST00000354186.8:ENST00000684360.1:ENST00000393496.5:ENST00000471431.1:ENST00000682290.1:ENST00000291478.9:ENST00000682363.1:ENST00000454902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.22891	3.93139	4.63387	0.00393565	2.57391e-4	0.0798064	0.00911512
chr20	45420507	45420561	9660784	0	+	0.611111	(0.57,0.629]	chr20	954480	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGT	ENSG00000124155.19	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000424705.3:ENST00000640549.2:ENST00000692236.1:ENST00000689203.1:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638691.2:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000639292.2:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000639872.1:ENST00000640649.1:ENST00000638927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	72	2	3.86148	3.931285	4.00109	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	26715220	26715320	83630	0	+	0.37	(0.36,0.392]	chr1	8853	173	INTRON	INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr13	60533010	60533110	7391290	0	+	0.39	(0.36,0.392]	chr13	682894	34	INTRON	INTRON	TDRD3	ENSG00000083544.16	ENST00000196169.7:ENST00000377894.6:ENST00000377881.8:ENST00000648252.1:ENST00000621840.4:ENST00000471710.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr15	75881872	75881971	8045091	0	+	0.373737	(0.36,0.392]	chr15	743332	23	INTRON	INTRON	UBE2Q2	ENSG00000140367.12	ENST00000569423.5:ENST00000267938.9:ENST00000561723.5:ENST00000561851.5:ENST00000426727.6:ENST00000567921.1:ENST00000563966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr20	530141	530240	9691619	0	-	0.373737	(0.36,0.392]	chr20	958431	17	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr3	172691267	172691366	2497978	0	-	0.383838	(0.36,0.392]	chr3	239091	428	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr4	185228224	185228324	2808192	0	+	0.38	(0.36,0.392]	chr4	265470	176	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr6	3098660	3098759	3689078	0	+	0.383838	(0.36,0.392]	chr6	336220	39	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000676758.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1:ENST00000679335.1:ENST00000679677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr8	17725456	17725556	5123348	0	-	0.39	(0.36,0.392]	chr8	458947	9	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000520196.5:ENST00000693296.1:ENST00000262102.10:ENST00000519263.5:ENST00000518138.5:ENST00000523718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.59992	3.930275	4.26063	0.00451705	0.00266188	0.0875511	0.0631592
chr8	98658616	98658716	5226601	0	-	0.42	(0.392,0.424]	chr8	467723	70	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	19	2	3.04168	3.9296300000000004	4.81758	1.87463e-4	6.29448e-8	0.00711698	5.585e-6
chr6	26906758	26906858	4026068	0	-	0.38	(0.36,0.392]	chr6	364334	172	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	17	2	3.54131	3.92848	4.31565	3.17078e-4	1.47786e-7	0.0111061	1.22253e-5
chr5	139341783	139341881	3333455	0	+	0.622449	(0.57,0.629]	chr5	306064	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	29	2	3.36723	3.928445	4.48966	3.34118e-6	7.76828e-8	2.05457e-4	6.78568e-6
chr13	79404503	79404603	7549264	0	-	0.5	(0.49,0.526]	chr13	694197	252	INTRON	INTRON	RBM26	ENSG00000139746.16	ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11:ENST00000472143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	51	2	3.65786	3.928185	4.19851	1.30094e-10	1e-12	1.74444e-8	1.72912e-10
chr17	514445	514545	8829457	0	-	0.49	(0.459,0.49]	chr17	842532	59	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	47	2	2.65682	3.9274750000000003	5.19813	2.45493e-6	1e-12	1.54892e-4	1.73382e-10
chr3	149638592	149638691	2470742	0	-	0.323232	(0.32,0.36]	chr3	236997	625	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	3.57181	3.927095	4.28238	2.01673e-8	1.31325e-10	1.93945e-6	1.71854e-8
chr16	28950936	28951011	8364397	0	+	0.666667	(0.629,1]	chr16	780171	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000565919.1:ENST00000562977.1:ENST00000565752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.65478	3.9267849999999997	5.19879	4.80586e-4	2.01813e-6	0.015761	1.31579e-4
chr15	85446204	85446304	8070604	0	+	0.5	(0.49,0.526]	chr15	746002	307	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.63247	3.9266750000000004	4.22088	3.91053e-4	5.07325e-6	0.0131535	3.03611e-4
chr4	1968503	1968602	2545614	0	+	0.414141	(0.392,0.424]	chr4	244677	70	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000382888.3:ENST00000679039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	21	2	3.90178	3.9265350000000003	3.95129	7.45573e-6	1.741e-7	4.27499e-4	1.41117e-5
chr5	179828783	179828881	3407806	0	+	0.306122	[0,0.32]	chr5	313165	32	INTRON	INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	24	2	2.84133	3.9263850000000002	5.01144	2.29438e-4	8.1023e-12	0.0083227	1.25454e-9
chr1	6866564	6866664	12710	0	+	0.43	(0.424,0.459]	chr1	1869	130	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000472283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	3.23804	3.926135	4.61423	0.00649971	4.85762e-7	0.114061	3.605e-5
chr3	141406155	141406254	2032745	0	+	0.454545	(0.424,0.459]	chr3	203118	5	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.23804	3.926135	4.61423	0.00649971	4.85762e-7	0.114061	3.605e-5
chr11	94969190	94969289	6710997	0	-	0.383838	(0.36,0.392]	chr11	613107	24	INTRON	INTRON	CWC15	ENSG00000150316.12	ENST00000279839.8:ENST00000616442.4:ENST00000621358.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr11	116975361	116975461	6750897	0	-	0.39	(0.36,0.392]	chr11	616028	179	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr2	54464299	54464399	1033205	0	+	0.39	(0.36,0.392]	chr2	110773	66	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr5	59673373	59673473	3478985	0	-	0.37	(0.36,0.392]	chr5	319265	870	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr5	70926879	70926979	3207206	0	+	0.37	(0.36,0.392]	chr5	295875	13	INTRON	INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr6	85676648	85676748	4120511	0	-	0.39	(0.36,0.392]	chr6	375573	41	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SNHG5	ENSG00000203875.13	ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr7	20335221	20335321	4326038	0	+	0.38	(0.36,0.392]	chr7	391058	28	INTRON	INTRON	ITGB8	ENSG00000105855.10	ENST00000537992.5:ENST00000222573.5:ENST00000478974.1:ENST00000460204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr9	123596851	123596951	5728083	0	-	0.37	(0.36,0.392]	chr9	513623	132	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.52068	3.9259399999999998	4.3312	0.00387074	0.00324516	0.078873	0.0730386
chr1	61197822	61197922	166084	0	+	0.56	(0.526,0.57]	chr1	19206	649	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.15803	3.925825	4.69362	0.00482649	1.98837e-4	0.0920354	0.00746609
chrX	73955510	73955609	10163940	0	+	0.545455	(0.526,0.57]	chrX	1012984	61	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000664328.1:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	3.15803	3.925825	4.69362	0.00482649	1.98837e-4	0.0920354	0.00746609
chr10	96866611	96866711	5950135	0	+	0.57	(0.526,0.57]	chr10	533659	78	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.40949	3.92559	4.44169	0.00141136	8.21639e-4	0.0368074	0.0238903
chr17	46943902	46944001	8730290	0	+	0.565657	(0.526,0.57]	chr17	829512	20	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.40949	3.92559	4.44169	0.00141136	8.21639e-4	0.0368074	0.0238903
chr22	40540418	40540518	10041049	0	-	0.53	(0.526,0.57]	chr22	1001148	67	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	3.40949	3.92559	4.44169	0.00141136	8.21639e-4	0.0368074	0.0238903
chr1	200856625	200856715	395208	0	+	0.433333	(0.424,0.459]	chr1	42388	1	INTRON	INTRON	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6:ENST00000475326.1	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	3.73279	3.92539	4.11799	1.78903e-5	5.78925e-9	9.13813e-4	6.09992e-7
chr1	51741988	51742086	144374	0	+	0.489796	(0.459,0.49]	chr1	17627	14	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chr15	63722083	63722183	8210541	0	-	0.49	(0.459,0.49]	chr15	761365	28	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chr19	19350128	19350225	9310296	0	+	0.484536	(0.459,0.49]	chr19	902310	3	INTRON	INTRON	MAU2	ENSG00000129933.21	ENST00000262815.13:ENST00000587938.7:ENST00000262816.11:ENST00000587638.6:ENST00000587709.5:ENST00000589947.7:ENST00000590882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chr2	105281621	105281721	1535024	0	-	0.49	(0.459,0.49]	chr2	159480	5	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000595531.5:ENST00000393359.7:ENST00000258449.2	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chr3	136618152	136618251	2447392	0	-	0.474747	(0.459,0.49]	chr3	234908	133	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chrX	77849213	77849313	10385399	0	-	0.49	(0.459,0.49]	chrX	1030599	75	INTRON	INTRON	MAGT1	ENSG00000102158.22	ENST00000618282.5:ENST00000358075.11:ENST00000692161.1:ENST00000685015.1:ENST00000691993.1:ENST00000688650.1:ENST00000691172.1:ENST00000689519.1:ENST00000685353.1:ENST00000689137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.64423	3.9252849999999997	4.20634	0.00276656	6.20842e-4	0.0641652	0.0191195
chr5	98939594	98939694	3262676	0	+	0.47	(0.459,0.49]	chr5	300671	87	INTRON	INTRON	CHD1-DT	ENSG00000248489.3	ENST00000513175.1:ENST00000693407.1:ENST00000670964.1	lncRNA	lncRNA	lncRNA	lncRNA	3	19	2	3.56953	3.925135	4.28074	4.08493e-5	3.57604e-6	0.00193677	2.18487e-4
chr1	145741766	145741866	748062	0	-	0.47	(0.459,0.49]	chr1	80141	30	UTR3	UTR3:EXON_MRNA	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.08436	3.924685	4.76501	0.00939464	1.46149e-4	0.161654	0.00564049
chr4	56060310	56060410	2624173	0	+	0.48	(0.459,0.49]	chr4	251814	99	INTRON	INTRON	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000629263.3:ENST00000636006.1:ENST00000646253.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.08436	3.924685	4.76501	0.00939464	1.46149e-4	0.161654	0.00564049
chr2	231100369	231100469	1331673	0	+	0.48	(0.459,0.49]	chr2	137750	128	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1:ENST00000488354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.88247	3.924665	3.96686	0.0104144	5.54129e-5	0.170122	0.00252909
chr1	52533607	52533704	619094	0	-	0.443299	(0.424,0.459]	chr1	68989	34	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.5463	3.9225950000000003	4.29889	0.00153741	1.12945e-5	0.0389999	6.02727e-4
chr1	43744815	43744915	128918	0	+	0.45	(0.424,0.459]	chr1	15625	56	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	3.64041	3.92201	4.20361	0.00115507	1.79381e-5	0.0316008	9.13813e-4
chr1	53946949	53947049	150474	0	+	0.51	(0.49,0.526]	chr1	18316	4	SS5_PROX	SS5_PROX:INTRON	LRRC42	ENSG00000116212.15	ENST00000371368.5:ENST00000371370.8:ENST00000319223.8:ENST00000444987.1	protein_coding	protein_coding	protein_coding	protein_coding	12	66	2	3.7949	3.920335	4.04577	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	49007788	49007888	7378633	0	+	0.4	(0.392,0.424]	chr13	681790	11	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.39796	3.9200150000000002	4.44207	0.00439831	5.58952e-6	0.0875511	3.2822e-4
chr1	70163418	70163517	649130	0	-	0.464646	(0.459,0.49]	chr1	72004	36	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.00648	3.9195949999999997	4.83271	0.0112903	1.09213e-4	0.181488	0.00442392
chr1	89921112	89921212	231450	0	+	0.48	(0.459,0.49]	chr1	23061	741	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.00648	3.9195949999999997	4.83271	0.0112903	1.09213e-4	0.181488	0.00442392
chr2	239361011	239361111	1732744	0	-	0.46	(0.459,0.49]	chr2	178005	77	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.00648	3.9195949999999997	4.83271	0.0112903	1.09213e-4	0.181488	0.00442392
chr22	19187357	19187457	9985324	0	-	0.48	(0.459,0.49]	chr22	993951	4	SS5_PROX	SS5_PROX:INTRON	CLTCL1	ENSG00000070371.16	ENST00000427926.6:ENST00000621271.4:ENST00000622493.4:ENST00000617926.4:ENST00000615606.4:ENST00000617103.4:ENST00000538828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.00648	3.9195949999999997	4.83271	0.0112903	1.09213e-4	0.181488	0.00442392
chr8	125268757	125268857	5086774	0	+	0.47	(0.459,0.49]	chr8	455136	861	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.00648	3.9195949999999997	4.83271	0.0112903	1.09213e-4	0.181488	0.00442392
chr22	23658569	23658665	9996107	0	-	0.5	(0.49,0.526]	chr22	995691	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272578	ENSG00000272578.5	ENST00000417194.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	21	2	3.70699	3.9195	4.13201	8.48086e-6	6.7032e-6	4.76746e-4	3.89775e-4
chr3	185277284	185277384	2510526	0	-	0.26	[0,0.32]	chr3	240404	234	INTRON	INTRON	EHHADH	ENSG00000113790.11	ENST00000465178.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	8	2	3.4411	3.91946	4.39782	0.00334699	9.57415e-4	0.0734189	0.0269423
chr5	66078530	66078627	3197063	0	+	0.319588	[0,0.32]	chr5	294876	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000503913.5:ENST00000509946.1:ENST00000506744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	20	2	3.5909	3.91936	4.24782	2.75424e-5	2.19187e-8	0.00135919	2.113e-6
chr20	3111312	3111412	9694461	0	-	0.47	(0.459,0.49]	chr20	959007	6	INTRON	INTRON	UBOX5	ENSG00000185019.17	ENST00000348031.6:ENST00000217173.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.56515	3.9189950000000002	4.27284	0.00227779	8.21277e-4	0.0552099	0.0238805
chr4	173171958	173172058	2790509	0	+	0.49	(0.459,0.49]	chr4	264310	26	INTRON	INTRON	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.56515	3.9189950000000002	4.27284	0.00227779	8.21277e-4	0.0552099	0.0238805
chr7	139362914	139363014	4567688	0	+	0.4	(0.392,0.424]	chr7	410439	22	INTRON	INTRON	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	3.7075	3.918195	4.12889	9.40427e-4	1.01794e-6	0.0266969	7.14423e-5
chr17	513847	513947	8829451	0	-	0.5	(0.49,0.526]	chr17	842532	53	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	120	2	3.61637	3.917725	4.21908	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59587398	59587498	3478125	0	-	0.45	(0.424,0.459]	chr5	319265	10	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	77	2	3.45223	3.9176800000000003	4.38313	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	100138735	100138834	1938179	0	+	0.434343	(0.424,0.459]	chr3	195342	234	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000489081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	3.91426	3.9165200000000002	3.91878	1.12148e-7	5.64013e-8	9.48939e-6	5.08613e-6
chr15	22509507	22509607	7923038	0	+	0.34	(0.32,0.36]	chr15	731075	135	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	25	72	2	3.76279	3.91599	4.06919	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	14241764	14241863	8329394	0	+	0.434343	(0.424,0.459]	chr16	775618	4	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574045.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	3.36286	3.91401	4.46516	3.10239e-6	2.35249e-6	1.93959e-4	1.51159e-4
chr22	38317252	38317345	10035389	0	-	0.88172	(0.629,1]	chr22	1000309	2	UTR5	UTR5:EXON_MRNA:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000403904.5:ENST00000413574.6:ENST00000405675.7	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.1936	3.91361	5.63362	2.90401e-4	1.82535e-8	0.0102379	1.78915e-6
chr16	53827	53908	8293285	0	+	0.753086	(0.629,1]	chr16	770035	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SNRNP25	ENSG00000161981.11	ENST00000293861.8:ENST00000383018.7:ENST00000397876.6:ENST00000417493.1:ENST00000493672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.86171	3.91331	4.96491	8.48224e-4	1.5112e-5	0.0240064	8.01855e-4
chr19	42248857	42248955	9503835	0	-	0.744898	(0.629,1]	chr19	936709	4	CDS	CDS:EXON_MRNA	ERF	ENSG00000105722.10	ENST00000222329.9:ENST00000440177.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.86171	3.91331	4.96491	8.48224e-4	1.5112e-5	0.0240064	8.01855e-4
chr2	171936323	171936423	1208008	0	+	0.48	(0.459,0.49]	chr2	126782	103	INTRON	INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	3.77994	3.91325	4.04656	2.14818e-4	3.80472e-5	0.00789628	0.00181622
chr11	108838505	108838565	6489335	0	+	0.283333	[0,0.32]	chr11	586746	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5:ENST00000533198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	17	2	3.83585	3.912005	3.98816	4.6269e-5	6.69422e-7	0.00212902	4.83422e-5
chr1	1615878	1615952	2825	0	+	0.864865	(0.629,1]	chr1	787	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MIB2	ENSG00000197530.13	ENST00000479659.5:ENST00000489635.5:ENST00000355826.10:ENST00000505820.7:ENST00000518681.6:ENST00000520777.6:ENST00000511502.5:ENST00000477990.1:ENST00000514363.1:ENST00000487053.5:ENST00000502470.5:ENST00000378712.5:ENST00000507082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr11	46381668	46381765	6390497	0	+	0.762887	(0.629,1]	chr11	572551	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDK	ENSG00000110492.17	ENST00000405308.6:ENST00000441869.5:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr16	2135689	2135758	8493005	0	-	0.826087	(0.629,1]	chr16	795708	1	UTR5	UTR5:EXON_MRNA	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr16	30651280	30651371	8369840	0	+	0.692308	(0.629,1]	chr16	781328	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000563399.5:ENST00000568754.5:ENST00000569864.5:ENST00000563211.5:ENST00000564946.5:ENST00000565410.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr18	79145652	79145751	9156701	0	+	0.646465	(0.629,1]	chr18	882393	14	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr19	3506310	3506392	9268043	0	+	0.780488	(0.629,1]	chr19	893650	1	UTR5	UTR5:EXON_MRNA	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000588327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr19	6424756	6424811	9422090	0	-	0.727273	(0.629,1]	chr19	922473	2	UTR5	UTR5:EXON_MRNA	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr2	127056292	127056391	1557377	0	-	0.676768	(0.629,1]	chr2	161514	24	EXON_MRNA	EXON_MRNA:INTRON	BIN1	ENSG00000136717.15	ENST00000357970.7:ENST00000393040.7:ENST00000348750.8:ENST00000259238.8:ENST00000346226.7:ENST00000393041.7:ENST00000351659.7:ENST00000352848.7:ENST00000376113.6:ENST00000316724.10:ENST00000462958.5:ENST00000409400.1:ENST00000466111.5:ENST00000484253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr2	241766409	241766509	1366073	0	+	0.66	(0.629,1]	chr2	141380	100	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr3	50675094	50675178	1871559	0	+	0.797619	(0.629,1]	chr3	190418	3	UTR5	UTR5:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr3	100709733	100709821	1940996	0	+	0.738636	(0.629,1]	chr3	195651	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr5	180612505	180612558	3683400	0	-	0.679245	(0.629,1]	chr5	335545	1	CDS	CDS:UTR3:EXON_MRNA	FLT4	ENSG00000037280.16	ENST00000261937.11:ENST00000393347.7:ENST00000507059.5:ENST00000502649.5:ENST00000619105.4:ENST00000510000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr6	31727196	31727266	4035615	0	-	0.657143	(0.629,1]	chr6	366068	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDAH2	ENSG00000213722.10	ENST00000375792.7:ENST00000375787.6:ENST00000483792.1:ENST00000480913.5:ENST00000416410.6:ENST00000469963.5:ENST00000436437.2:ENST00000437288.5:ENST00000375789.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr6	116279265	116279358	4174261	0	-	0.634409	(0.629,1]	chr6	380176	8	CDS	CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr6	138693017	138693117	3896460	0	+	0.79	(0.629,1]	chr6	355930	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000225177	ENSG00000225177.6	ENST00000432673.1	lncRNA	lncRNA	lncRNA	lncRNA	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr7	87152698	87152795	4452209	0	+	0.71134	(0.629,1]	chr7	400104	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	10	2	3.8818	3.909	3.9362	0.0064023	0.0052327	0.114061	0.0992178
chr9	17704088	17704188	5346342	0	+	0.38	(0.36,0.392]	chr9	477852	738	INTRON	INTRON	SH3GL2	ENSG00000107295.10	ENST00000380607.5	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.85081	3.908995	4.96718	0.00352888	1.24104e-4	0.0751127	0.0049353
chrX	72505163	72505263	10371296	0	-	0.35	(0.32,0.36]	chrX	1029706	95	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.53935	3.9083950000000005	4.27744	3.19299e-4	6.03386e-5	0.010926	0.00268144
chr9	18490758	18490858	5353127	0	+	0.48	(0.459,0.49]	chr9	477915	161	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1:ENST00000327883.11:ENST00000431052.6:ENST00000380548.9:ENST00000380570.8:ENST00000380566.8:ENST00000276935.6	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	3.32099	3.908245	4.4955	2.2051e-4	5.33756e-7	0.00809052	3.92587e-5
chr4	86967139	86967239	2680862	0	+	0.41	(0.392,0.424]	chr4	255314	182	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511996.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	11	2	2.89309	3.908055	4.92302	0.00168714	1.45314e-4	0.0424371	0.00569484
chr17	51259905	51259977	8966602	0	-	0.805556	(0.629,1]	chr17	863065	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.09939	3.90693	5.71447	0.00408309	6.42213e-9	0.0825355	6.7535e-7
chr13	21408558	21408657	7462817	0	-	0.353535	(0.32,0.36]	chr13	687519	53	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000494731.5:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	8	2	3.08717	3.906835	4.7265	0.00535148	6.12159e-4	0.100211	0.0189985
chr2	105359099	105359198	1535559	0	-	0.323232	(0.32,0.36]	chr2	159511	15	UTR3	UTR3:EXON_MRNA	FHL2	ENSG00000115641.19	ENST00000409177.6	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.08717	3.906835	4.7265	0.00535148	6.12159e-4	0.100211	0.0189985
chrX	46736213	46736313	10336562	0	-	0.31	[0,0.32]	chrX	1025956	533	INTRON	INTRON	SLC9A7	ENSG00000065923.10	ENST00000616978.5:ENST00000328306.4	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.27638	3.9063800000000004	4.53638	0.0118823	8.41855e-6	0.184357	4.71048e-4
chr2	206150425	206150524	1677301	0	-	0.414141	(0.392,0.424]	chr2	172511	1	INTRON	INTRON	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5:ENST00000456284.5:ENST00000454195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	3.54722	3.905705	4.26419	1.52245e-4	2.06452e-7	0.0058275	1.64563e-5
chr18	24039965	24040065	9083848	0	+	0.29	[0,0.32]	chr18	877876	198	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000578150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	3.35176	3.9054400000000005	4.45912	0.0102933	1.18389e-5	0.170122	6.49715e-4
chr5	38915353	38915452	3161008	0	+	0.313131	[0,0.32]	chr5	291809	105	INTRON	INTRON	OSMR	ENSG00000145623.13	ENST00000274276.8:ENST00000513831.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.35176	3.9054400000000005	4.45912	0.0102933	1.18389e-5	0.170122	6.49715e-4
chr17	39719686	39719786	8712484	0	+	0.55	(0.526,0.57]	chr17	825986	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000578373.5:ENST00000583038.5:ENST00000582818.5:ENST00000578630.1:ENST00000584684.1:ENST00000580074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	185	2	3.72985	3.90512	4.08039	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	38286902	38286999	10323246	0	-	0.525773	(0.49,0.526]	chrX	1024913	14	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPGR	ENSG00000156313.15	ENST00000642395.2:ENST00000339363.7:ENST00000482855.5:ENST00000644238.1:ENST00000642170.1:ENST00000642739.1:ENST00000644337.1:ENST00000645124.1:ENST00000474584.5:ENST00000646020.1:ENST00000494707.6:ENST00000645032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	3.73694	3.90477	4.0726	1.93553e-5	3.40684e-6	9.87839e-4	2.10826e-4
chr12	11123777	11123877	7087576	0	-	0.26	[0,0.32]	chr12	651870	22	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	14	41	2	3.28471	3.90447	4.52423	6.73588e-8	1e-12	5.94482e-6	1.72912e-10
chr1	153848639	153848739	768859	0	-	0.52	(0.49,0.526]	chr1	84218	199	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	58	2	3.16642	3.903595	4.64077	6.08517e-11	1e-12	8.50375e-9	1.72912e-10
chr10	73799499	73799599	5893263	0	+	0.52	(0.49,0.526]	chr10	529479	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZSWIM8	ENSG00000214655.11	ENST00000604729.6:ENST00000398706.6:ENST00000603114.5:ENST00000604524.5:ENST00000605216.5:ENST00000433366.6:ENST00000492395.5:ENST00000603187.5:ENST00000412198.5:ENST00000604754.1:ENST00000603409.5:ENST00000604165.1:ENST00000603195.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.72059	3.90276	4.08493	0.00395081	2.73826e-4	0.0816719	0.00975361
chr2	169745927	169746027	1202412	0	+	0.52	(0.49,0.526]	chr2	126060	40	INTRON	INTRON	KLHL23	ENSG00000213160.10	ENST00000498202.6:ENST00000272797.8:ENST00000602521.1:ENST00000392647.7:ENST00000437875.1:ENST00000494387.1:ENST00000448589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.72059	3.90276	4.08493	0.00395081	2.73826e-4	0.0816719	0.00975361
chr12	45413551	45413649	6890299	0	+	0.469388	(0.459,0.49]	chr12	628310	5	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1:ENST00000679426.1:ENST00000441606.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	37	2	3.18526	3.9019399999999997	4.61862	1.59173e-7	2.51524e-11	1.31413e-5	3.66433e-9
chr10	12109610	12109710	5790359	0	+	0.45	(0.424,0.459]	chr10	521517	12	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000448829.1	protein_coding	protein_coding	protein_coding	protein_coding	17	67	2	3.64552	3.9018800000000002	4.15824	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	79334625	79334725	8050025	0	+	0.42	(0.392,0.424]	chr15	744146	119	INTRON	INTRON	TMED3	ENSG00000166557.14	ENST00000424155.6:ENST00000536821.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.62464	3.90163	4.17862	1.11057e-4	4.01331e-5	0.00448562	0.00187621
chr7	87152795	87152869	4452210	0	+	0.716216	(0.629,1]	chr7	400105	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.781	3.9011750000000003	5.02135	0.00122107	9.70346e-6	0.0323167	5.37523e-4
chr1	45948097	45948197	138635	0	+	0.45	(0.424,0.459]	chr1	16894	302	INTRON	INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1	protein_coding	protein_coding	protein_coding	protein_coding	10	35	2	3.0658	3.9005149999999995	4.73523	7.24823e-8	5.26214e-11	6.33884e-6	7.33664e-9
chr16	30862614	30862714	8546511	0	-	0.42	(0.392,0.424]	chr16	804552	99	INTRON	INTRON	BCL7C	ENSG00000099385.12	ENST00000380317.8:ENST00000574418.5:ENST00000572628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	3.29765	3.89973	4.50181	1.04913e-4	8.22103e-9	0.00432856	8.47625e-7
chr8	70334368	70334468	5189832	0	-	0.43	(0.424,0.459]	chr8	465128	372	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	3.34098	3.89913	4.45728	6.42672e-6	2.77305e-9	3.74918e-4	3.07081e-7
chr15	50159195	50159294	8163372	0	-	0.262626	[0,0.32]	chr15	756824	399	INTRON	INTRON	ATP8B4	ENSG00000104043.15	ENST00000558829.1	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	3.56352	3.8986850000000004	4.23385	3.91057e-7	4.82591e-10	2.96969e-5	5.93399e-8
chr1	46667356	46667456	603890	0	-	0.5	(0.49,0.526]	chr1	67870	16	INTRON	INTRON	ATPAF1	ENSG00000123472.13	ENST00000576409.5:ENST00000574428.6:ENST00000329231.8:ENST00000474020.5:ENST00000487193.1:ENST00000525633.1:ENST00000460928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.51463	3.8980249999999996	5.28142	0.0130492	2.46593e-6	0.198111	1.54892e-4
chr2	39055123	39055223	1423958	0	-	0.38	(0.36,0.392]	chr2	148226	3	SS3_PROX	SS3_PROX:INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1:ENST00000688189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	3.83113	3.897655	3.96418	6.41601e-4	3.41715e-7	0.0193935	2.60631e-5
chr9	131189131	131189231	5518655	0	+	0.4	(0.392,0.424]	chr9	495478	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.6:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	19	2	3.61658	3.8975999999999997	4.17862	4.01331e-5	5.85914e-7	0.00187621	4.27724e-5
chr3	17490982	17491082	2194059	0	-	0.39	(0.36,0.392]	chr3	214241	621	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	35	2	3.71497	3.897155	4.07934	8.47414e-10	1.30483e-10	1.01126e-7	1.71449e-8
chr5	17229509	17229609	3132441	0	+	0.53	(0.526,0.57]	chr5	289659	113	INTRON	INTRON	BASP1	ENSG00000176788.9	ENST00000606445.1:ENST00000616743.1:ENST00000322611.4	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.75933	3.89682	5.03431	2.54551e-4	1.64566e-5	0.00914193	8.48927e-4
chr10	121550090	121550190	6274766	0	-	0.44	(0.424,0.459]	chr10	561586	110	INTRON	INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000683250.1:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10:ENST00000683678.1:ENST00000682400.1:ENST00000490349.5:ENST00000359354.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.8224	3.895245	4.96809	0.00212808	6.10851e-5	0.0533203	0.0027377
chr12	6339098	6339196	7076130	0	-	0.510204	(0.49,0.526]	chr12	649587	45	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.63247	3.894805	4.15714	0.00319561	3.91053e-4	0.0699484	0.0131535
chr7	128805441	128805524	4540751	0	+	0.493976	(0.49,0.526]	chr7	408260	2	CDS	CDS:EXON_MRNA	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.63247	3.894805	4.15714	0.00319561	3.91053e-4	0.0699484	0.0131535
chr1	50632642	50632742	611272	0	-	0.38	(0.36,0.392]	chr1	68244	258	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	41	2	3.30401	3.8939399999999997	4.48387	3.61378e-10	1e-12	4.50351e-8	1.72912e-10
chr7	69938677	69938777	4410102	0	+	0.47	(0.459,0.49]	chr7	396971	388	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1:ENST00000476695.2:ENST00000643587.1:ENST00000656998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	25	2	2.85096	3.89321	4.93546	1.61211e-4	1.66582e-9	0.00615251	1.91035e-7
chr11	3010711	3010809	6538976	0	-	0.683673	(0.629,1]	chr11	593917	13	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	3.60202	3.8927300000000002	4.18344	0.00183228	1.20607e-4	0.0469284	0.00489816
chr16	30762343	30762398	8370720	0	+	0.745455	(0.629,1]	chr16	781657	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF40	ENSG00000103549.22	ENST00000563909.5:ENST00000566811.5:ENST00000324685.11:ENST00000357890.9:ENST00000563683.5:ENST00000565995.5:ENST00000565931.1:ENST00000493683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.60202	3.8927300000000002	4.18344	0.00183228	1.20607e-4	0.0469284	0.00489816
chr19	7183216	7183315	9424435	0	-	0.373737	(0.36,0.392]	chr19	923193	81	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	21	2	3.75437	3.89262	4.03087	3.77193e-6	2.30702e-7	2.29843e-4	1.8151e-5
chr15	43633230	43633329	8148309	0	-	0.474747	(0.459,0.49]	chr15	754962	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CATSPER2	ENSG00000166762.19	ENST00000396879.8:ENST00000381761.6:ENST00000321596.6:ENST00000469461.6:ENST00000433380.5:ENST00000419262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	41	2	3.68937	3.892195	4.09502	1.50371e-8	3.81239e-12	1.48794e-6	6.16886e-10
chr8	90980961	90981059	5215706	0	-	0.397959	(0.392,0.424]	chr8	466711	1	INTRON	INTRON	C8orf88	ENSG00000253250.3	ENST00000517562.3	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.84278	3.891985	4.94119	0.00949728	1.23024e-8	0.16275	1.23695e-6
chr12	50538022	50538122	6908578	0	+	0.35	(0.32,0.36]	chr12	629879	324	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	25	2	3.82135	3.8917599999999997	3.96217	3.46128e-7	1.2354e-8	2.6576e-5	1.23077e-6
chr11	122127915	122128015	6763490	0	-	0.37	(0.36,0.392]	chr11	617560	112	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000650497.1:ENST00000664908.1:ENST00000648209.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000656793.1:ENST00000663296.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000660603.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000666085.1:ENST00000534297.2:ENST00000534782.4	lncRNA	lncRNA	lncRNA	lncRNA	9	30	2	3.8888	3.89137	3.89394	1.9178e-8	1.38753e-9	1.85307e-6	1.61538e-7
chr12	32190959	32191059	6865154	0	+	0.37	(0.36,0.392]	chr12	626906	815	INTRON	INTRON	BICD1	ENSG00000151746.15	ENST00000652176.1:ENST00000548411.5:ENST00000395758.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	19	2	2.63429	3.89121	5.14813	0.00124124	2.64969e-9	0.032836	2.94929e-7
chr12	120196772	120196872	7299411	0	-	0.55	(0.526,0.57]	chr12	673564	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	3.51751	3.8912050000000002	4.2649	6.6106e-12	6.45073e-12	1.03666e-9	1.01408e-9
chr4	41384803	41384903	2610531	0	+	0.36	(0.32,0.36]	chr4	250062	235	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	12	2	3.87259	3.8908050000000003	3.90902	5.03152e-4	3.96495e-5	0.0161742	0.00188516
chr15	92982548	92982646	8087305	0	+	0.428571	(0.424,0.459]	chr15	748063	7	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	3.80014	3.89038	3.98062	3.54639e-4	2.41657e-6	0.0120332	1.5318e-4
chr8	26353903	26353997	4952569	0	+	0.457447	(0.424,0.459]	chr8	443695	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	3.80014	3.89038	3.98062	3.54639e-4	2.41657e-6	0.0120332	1.5318e-4
chrX	74250019	74250119	10376862	0	-	0.45	(0.424,0.459]	chrX	1030066	17	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	3	16	2	3.80014	3.89038	3.98062	3.54639e-4	2.41657e-6	0.0120332	1.5318e-4
chr1	154946234	154946329	773584	0	-	0.557895	(0.526,0.57]	chr1	84937	8	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	3.80324	3.889095	3.97495	3.21576e-5	2.21846e-6	0.00156852	1.43493e-4
chr19	48197349	48197439	9371612	0	+	0.533333	(0.526,0.57]	chr19	912252	2	UTR3	UTR3:EXON_MRNA	ZSWIM9	ENSG00000185453.13	ENST00000614654.2:ENST00000328759.11	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	3.80324	3.889095	3.97495	3.21576e-5	2.21846e-6	0.00156852	1.43493e-4
chr4	47549651	47549751	2615938	0	+	0.34	(0.32,0.36]	chr4	250607	22	INTRON	INTRON	ATP10D	ENSG00000145246.14	ENST00000273859.8:ENST00000503288.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	3.75647	3.88886	4.02125	3.53532e-4	6.44559e-5	0.0122629	0.00284455
chr8	86446951	86447051	5018708	0	+	0.37	(0.36,0.392]	chr8	450252	38	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520453.5:ENST00000521997.5:ENST00000524036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	3.28561	3.888705	4.4918	0.0015215	4.36875e-6	0.0397018	2.58808e-4
chr6	152094384	152094476	3939174	0	+	0.48913	(0.459,0.49]	chr6	358215	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ESR1	ENSG00000091831.25	ENST00000440973.5:ENST00000338799.9:ENST00000443427.5:ENST00000406599.5:ENST00000456483.3:ENST00000206249.8:ENST00000427531.6:ENST00000641399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	126	2	3.50608	3.888125	4.27017	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	56801827	56801927	10138799	0	+	0.49	(0.459,0.49]	chrX	1011168	693	INTRON	INTRON	NBDY	ENSG00000204272.13	ENST00000637096.1:ENST00000374922.9:ENST00000423617.2:ENST00000451583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.56953	3.8879349999999997	4.20634	0.00276656	4.08493e-5	0.0641652	0.00193677
chr12	12201103	12201203	7088933	0	-	0.41	(0.392,0.424]	chr12	651992	136	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1:ENST00000545658.1:ENST00000535731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	3.3308	3.886435	4.44207	6.63878e-4	5.58952e-6	0.0199616	3.2822e-4
chrX	73827091	73827190	10373478	0	-	0.484848	(0.459,0.49]	chrX	1029941	66	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	30	134	2	3.88473	3.8864	3.88807	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	137392043	137392143	3608146	0	-	0.4	(0.392,0.424]	chr5	327611	267	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	3.7075	3.886355	4.06521	9.40427e-4	3.68288e-8	0.0266969	3.38313e-6
chr15	64076136	64076235	8211726	0	-	0.414141	(0.392,0.424]	chr15	761497	2	INTRON	INTRON	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	3.73536	3.886195	4.03703	1.48653e-4	3.4035e-5	0.00578975	0.0016098
chr17	30731667	30731758	8691520	0	+	0.626374	(0.57,0.629]	chr17	822871	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578070.5:ENST00000579526.5:ENST00000690405.1:ENST00000497969.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	19	2	3.77045	3.88589	4.00133	9.07674e-5	1.78261e-5	0.00383949	9.13271e-4
chr4	143350023	143350117	3036917	0	-	0.734043	(0.629,1]	chr4	282811	9	EXON_PSEUDO	EXON_PSEUDO	ENSG00000228981	ENSG00000228981.3	ENST00000475555.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	3.32274	3.8852700000000002	4.4478	7.60906e-4	3.00864e-8	0.0223166	2.83167e-6
chr8	26385487	26385587	4952796	0	+	0.6	(0.57,0.629]	chr8	443750	16	INTRON	INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000520077.5:ENST00000523949.5:ENST00000523515.5:ENST00000520409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.85355	3.88454	3.91553	0.00651627	5.98045e-5	0.114061	0.00266913
chr6	26906858	26906958	4026069	0	-	0.42	(0.392,0.424]	chr6	364334	173	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5:ENST00000463434.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	18	2	3.78194	3.883925	3.98591	7.47402e-4	6.6292e-8	0.0225125	5.85414e-6
chr3	129397240	129397340	2432484	0	-	0.57	(0.526,0.57]	chr3	233205	1	SS3_PROX	SS3_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000687239.1:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	20	94	2	3.5395	3.883725	4.22795	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	92275536	92275636	689989	0	-	0.35	(0.32,0.36]	chr1	74988	35	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000463560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	3.6551	3.883545	4.11199	2.11023e-4	2.44546e-6	0.00785	1.55199e-4
chr8	31058447	31058543	4966990	0	+	0.375	(0.36,0.392]	chr8	444947	1	CDS_START	CDS_START:CDS:EXON_MRNA	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	45	131	2	3.73844	3.88258	4.02672	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	72144509	72144609	6157609	0	-	0.38	(0.36,0.392]	chr10	551233	102	INTRON	INTRON	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000530394.5:ENST00000672940.1:ENST00000317126.8:ENST00000394915.7:ENST00000525286.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	15	2	3.10651	3.882495	4.65848	8.23373e-4	8.06613e-7	0.0238997	5.78931e-5
chr12	62504891	62504991	6931081	0	+	0.39	(0.36,0.392]	chr12	634376	28	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000549378.5:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6:ENST00000552115.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	3.54131	3.882205	4.2231	3.17078e-4	5.04939e-9	0.0111061	5.39084e-7
chr16	85360748	85360848	8472744	0	+	0.55	(0.526,0.57]	chr16	792098	14	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.32233	3.88201	4.44169	8.21639e-4	1.36681e-4	0.0238903	0.00539233
chr15	67223100	67223200	8221346	0	-	0.47	(0.459,0.49]	chr15	762903	20	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding	30	124	2	3.20897	3.8817049999999997	4.55444	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	56981192	56981292	9127090	0	+	0.37	(0.36,0.392]	chr18	880628	183	INTRON	INTRON	WDR7	ENSG00000091157.15	ENST00000589935.1:ENST00000254442.8:ENST00000357574.7:ENST00000591449.1:ENST00000585669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	3.10651	3.88162	4.65673	8.23373e-4	7.48315e-4	0.0238997	0.0220209
chr12	122895351	122895451	7309341	0	-	0.57	(0.526,0.57]	chr12	675025	53	INTRON	INTRON	VPS37B	ENSG00000139722.7	ENST00000267202.7:ENST00000535765.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.62355	3.879905	4.13626	0.00339748	4.05302e-4	0.0728314	0.0135138
chr16	70372983	70373083	8426612	0	+	0.57	(0.526,0.57]	chr16	789478	11	UTR3	UTR3:EXON_MRNA	DDX19A	ENSG00000168872.17	ENST00000569771.5:ENST00000302243.12:ENST00000566574.5:ENST00000562140.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.62355	3.879905	4.13626	0.00339748	4.05302e-4	0.0728314	0.0135138
chr8	108218852	108218951	5245951	0	-	0.535354	(0.526,0.57]	chr8	469197	10	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	3.62355	3.879905	4.13626	0.00339748	4.05302e-4	0.0728314	0.0135138
chr9	128327182	128327280	5501352	0	+	0.530612	(0.526,0.57]	chr9	492179	9	INTRON	INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.62355	3.879905	4.13626	0.00339748	4.05302e-4	0.0728314	0.0135138
chr6	157310885	157310985	4245633	0	-	0.54	(0.526,0.57]	chr6	386012	175	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.68029	3.8789800000000003	4.07767	0.00403601	7.86103e-6	0.0817225	4.5317e-4
chr19	58544393	58544484	9398488	0	+	0.758242	(0.629,1]	chr19	917902	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.23526	3.8789749999999996	4.52269	0.00139352	3.10525e-4	0.037038	0.0106515
chr15	52118082	52118181	8170139	0	-	0.585859	(0.57,0.629]	chr15	757645	31	UTR3	UTR3:EXON_MRNA	GNB5	ENSG00000069966.19	ENST00000261837.12	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.28948	3.8788750000000003	4.46827	0.00212278	5.2773e-4	0.0532704	0.0167673
chr3	196926213	196926311	2149536	0	+	0.602041	(0.57,0.629]	chr3	210787	23	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000448068.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.28948	3.8788750000000003	4.46827	0.00212278	5.2773e-4	0.0532704	0.0167673
chr8	16168787	16168870	5117049	0	-	0.385542	(0.36,0.392]	chr8	458560	5	CDS	CDS:EXON_MRNA:INTRON	MSR1	ENSG00000038945.15	ENST00000350896.3:ENST00000262101.10:ENST00000445506.6:ENST00000355282.6:ENST00000381998.8:ENST00000519060.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	86	2	3.68011	3.878305	4.0765	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	135230761	135230861	1568468	0	-	0.41	(0.392,0.424]	chr2	162768	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB3	ENSG00000121988.18	ENST00000412849.5:ENST00000619650.4:ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	20	2	2.93676	3.8771700000000004	4.81758	1.09179e-4	6.29448e-8	0.00442392	5.585e-6
chr17	31326552	31326652	8696906	0	+	0.58	(0.57,0.629]	chr17	823502	3	SS5_PROX	SS5_PROX:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	3.27739	3.8766249999999998	4.47586	6.22568e-6	1.32384e-7	3.59946e-4	1.10534e-5
chr2	43534450	43534549	1436555	0	-	0.434343	(0.424,0.459]	chr2	148879	61	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000462185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	12	2	3.03857	3.876405	4.71424	5.63002e-4	3.07139e-4	0.0178211	0.0105767
chr14	49619004	49619104	7817225	0	-	0.44	(0.424,0.459]	chr14	719517	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL36AL	ENSG00000165502.7	ENST00000298289.7	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	2.78449	3.87629	4.96809	2.25298e-4	6.10851e-5	0.00827964	0.0027377
chr1	167782666	167782766	331076	0	+	0.43	(0.424,0.459]	chr1	37091	61	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3:ENST00000403379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.56804	3.87596	5.18388	0.00769936	1.21594e-5	0.135524	6.58699e-4
chr7	134784440	134784540	4559682	0	+	0.45	(0.424,0.459]	chr7	409537	43	INTRON	INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000454108.5:ENST00000361675.7:ENST00000475772.5:ENST00000430085.5:ENST00000462181.1:ENST00000482470.5:ENST00000361901.6:ENST00000498254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.56804	3.87596	5.18388	0.00769936	1.21594e-5	0.135524	6.58699e-4
chr3	142885868	142885968	2460825	0	-	0.48	(0.459,0.49]	chr3	236377	210	INTRON	INTRON	PCOLCE2	ENSG00000163710.9	ENST00000295992.8:ENST00000648195.1:ENST00000485766.1:ENST00000495732.5:ENST00000461818.5:ENST00000493733.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	51	2	3.31746	3.87592	4.43438	1.9785e-11	1e-12	2.91377e-9	1.73382e-10
chr1	156874905	156874956	311096	0	+	0.627451	(0.57,0.629]	chr1	34525	1	CDS	CDS:EXON_MRNA	NTRK1	ENSG00000198400.13	ENST00000392302.7:ENST00000674537.1:ENST00000497019.7:ENST00000530298.5:ENST00000368196.7:ENST00000524377.7:ENST00000358660.3:ENST00000534682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.77045	3.875565	3.98068	0.0053729	9.07674e-5	0.100211	0.00383949
chr13	48979412	48979512	7378348	0	+	0.37	(0.36,0.392]	chr13	681783	21	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	55	2	3.84815	3.875235	3.90232	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	194648742	194648804	2523014	0	-	0.387097	(0.36,0.392]	chr3	241657	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LSG1	ENSG00000041802.11	ENST00000265245.10:ENST00000460584.1:ENST00000437613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	40	116	2	3.61019	3.8747999999999996	4.13941	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	116923907	116924006	6266166	0	-	0.313131	[0,0.32]	chr10	560697	20	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chr13	49026788	49026888	7378823	0	+	0.26	[0,0.32]	chr13	681790	201	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chr15	50489102	50489201	7975903	0	+	0.313131	[0,0.32]	chr15	737785	44	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chr17	66759719	66759819	8783499	0	+	0.32	[0,0.32]	chr17	835705	166	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chr3	129894331	129894431	1990507	0	+	0.31	[0,0.32]	chr3	200493	2	SS5_PROX	SS5_PROX:INTRON	TMCC1-DT	ENSG00000271270.8	ENST00000605830.6:ENST00000686063.1:ENST00000690344.1:ENST00000605698.2:ENST00000603884.5:ENST00000671446.1:ENST00000653304.1	lncRNA	lncRNA	lncRNA	lncRNA	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chrX	80752318	80752418	10386983	0	-	0.3	[0,0.32]	chrX	1030931	62	INTRON	INTRON	BRWD3	ENSG00000165288.11	ENST00000373275.5:ENST00000478415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.35176	3.87479	4.39782	0.0102933	0.00334699	0.170122	0.0734189
chr5	138912241	138912341	3332691	0	+	0.45	(0.424,0.459]	chr5	305905	74	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000520400.5:ENST00000522013.5:ENST00000523298.5:ENST00000523685.5:ENST00000517533.5:ENST00000522052.5:ENST00000540387.5:ENST00000521368.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	88	2	3.76492	3.8743600000000002	3.9838	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	161922778	161922878	319397	0	+	0.52	(0.49,0.526]	chr1	36141	100	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.31862	3.874165	5.42971	0.0101596	5.89334e-7	0.166645	4.28084e-5
chr1	89853054	89853154	230769	0	+	0.42	(0.392,0.424]	chr1	23061	60	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	22	74	2	3.67948	3.873125	4.06677	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	4253519	4253619	8850896	0	-	0.4	(0.392,0.424]	chr17	845699	107	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000575955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.7075	3.8722649999999996	4.03703	9.40427e-4	1.48653e-4	0.0266969	0.00578975
chr3	146537237	146537323	2468579	0	-	0.418605	(0.392,0.424]	chr3	236730	3	INTRON	INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000469266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.7075	3.8722649999999996	4.03703	9.40427e-4	1.48653e-4	0.0266969	0.00578975
chr4	109148640	109148740	2991608	0	-	0.41	(0.392,0.424]	chr4	280109	981	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	3.7075	3.8722649999999996	4.03703	9.40427e-4	1.48653e-4	0.0266969	0.00578975
chr17	50722945	50723045	8741684	0	+	0.4	(0.392,0.424]	chr17	832098	2	SS5_PROX	SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.78194	3.8720749999999997	3.96221	7.47402e-4	1.96069e-4	0.0225125	0.00725539
chr5	88296830	88296929	3247369	0	+	0.424242	(0.392,0.424]	chr5	299598	6	INTRON	INTRON	TMEM161B-DT	ENSG00000247828.9	ENST00000504922.6:ENST00000658478.1:ENST00000501869.7:ENST00000654762.1:ENST00000661627.1:ENST00000689901.1:ENST00000668471.1:ENST00000671394.1:ENST00000501715.6:ENST00000657972.2:ENST00000684909.1:ENST00000513694.2:ENST00000510087.6:ENST00000657617.1:ENST00000686930.1:ENST00000653183.1	lncRNA	lncRNA	lncRNA	lncRNA	2	11	2	3.78194	3.8720749999999997	3.96221	7.47402e-4	1.96069e-4	0.0225125	0.00725539
chr10	12494348	12494448	5792942	0	+	0.27	[0,0.32]	chr10	521723	1441	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr12	79496180	79496280	7216704	0	-	0.29	[0,0.32]	chr12	665645	409	INTRON	INTRON	ENSG00000257894	ENSG00000257894.2	ENST00000549527.1:ENST00000553165.1	lncRNA	lncRNA	lncRNA	lncRNA	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr12	82421604	82421704	6980696	0	+	0.26	[0,0.32]	chr12	637833	181	INTRON	INTRON	METTL25	ENSG00000127720.8	ENST00000248306.8:ENST00000547357.5:ENST00000550298.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr12	104260756	104260854	7002531	0	+	0.306122	[0,0.32]	chr12	640141	23	INTRON	INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr14	58289013	58289113	7840346	0	-	0.31	[0,0.32]	chr14	722100	2	SS3_PROX	SS3_PROX:INTRON	ARMH4:PSMA3-AS1	ENSG00000139971.15:ENSG00000257621.9	ENST00000554218.1:ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr4	168698824	168698923	2787021	0	+	0.30303	[0,0.32]	chr4	264104	72	INTRON	INTRON	PALLD	ENSG00000129116.19	ENST00000505667.6:ENST00000261509.10:ENST00000508898.5:ENST00000512127.5	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr6	136493055	136493155	4210280	0	-	0.31	[0,0.32]	chr6	383043	263	INTRON	INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chrX	73820648	73820747	10373413	0	-	0.313131	[0,0.32]	chrX	1029941	1	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1	lncRNA	lncRNA	lncRNA	lncRNA	1	6	2	3.27638	3.8714750000000002	4.46657	0.0118823	0.00288167	0.184357	0.0662445
chr1	155975597	155975695	779635	0	-	0.591837	(0.57,0.629]	chr1	86244	34	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	3.20738	3.8711200000000003	4.53486	0.00279229	3.95206e-4	0.064521	0.0135724
chr12	118156475	118156574	7294245	0	-	0.373737	(0.36,0.392]	chr12	672849	37	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000543709.5:ENST00000537305.5:ENST00000537952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	10	2	3.83113	3.871025	3.91092	6.41601e-4	5.00165e-4	0.0193935	0.0160179
chr17	30281390	30281490	8906614	0	-	0.38	(0.36,0.392]	chr17	853544	68	INTRON	INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5:ENST00000577623.5:ENST00000581037.5:ENST00000584603.2:ENST00000582669.1:ENST00000579325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.83113	3.871025	3.91092	6.41601e-4	5.00165e-4	0.0193935	0.0160179
chr9	100144749	100144849	5450474	0	+	0.58	(0.57,0.629]	chr9	486785	124	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	3.60603	3.870705	4.13538	2.87788e-4	5.27543e-6	0.0101506	3.12112e-4
chr3	112555703	112555802	2380281	0	-	0.464646	(0.459,0.49]	chr3	229018	20	INTRON	INTRON	ATG3	ENSG00000144848.11	ENST00000283290.10:ENST00000402314.6:ENST00000495756.5:ENST00000496423.1:ENST00000492886.5:ENST00000465980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	3.00648	3.869335	4.73219	0.0112903	3.0068e-8	0.181488	2.8316e-6
chr13	27621607	27621692	7339468	0	+	0.705882	(0.629,1]	chr13	678515	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	POLR1D	ENSG00000186184.20	ENST00000627604.1:ENST00000626064.1:ENST00000637180.1:ENST00000621089.2:ENST00000693488.1:ENST00000637389.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.15981	3.8691500000000003	4.57849	0.00188809	2.2493e-4	0.0466341	0.00827964
chr1	226186482	226186575	871458	0	-	0.817204	(0.629,1]	chr1	97112	2	CDS	CDS:EXON_MRNA	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.39846	3.868725	4.33899	8.51164e-4	5.39652e-4	0.0245129	0.0171646
chr15	39993834	39993932	7946947	0	+	0.459184	(0.424,0.459]	chr15	733948	6	INTRON	INTRON	EIF2AK4	ENSG00000128829.12	ENST00000263791.10:ENST00000560855.5:ENST00000558629.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.3314	3.8686949999999998	4.40599	0.00517898	0.00154565	0.0992178	0.0389999
chr4	151711067	151711166	3059513	0	-	0.454545	(0.424,0.459]	chr4	283982	26	INTRON	INTRON	GATB	ENSG00000059691.12	ENST00000263985.11:ENST00000515812.5:ENST00000515564.5:ENST00000503160.5:ENST00000505211.5:ENST00000515884.5:ENST00000511538.5:ENST00000512306.5:ENST00000515490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.3314	3.8686949999999998	4.40599	0.00517898	0.00154565	0.0992178	0.0389999
chr5	137380850	137380950	3608034	0	-	0.45	(0.424,0.459]	chr5	327611	155	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.3314	3.8686949999999998	4.40599	0.00517898	0.00154565	0.0992178	0.0389999
chr9	91300272	91300371	5654930	0	-	0.434343	(0.424,0.459]	chr9	506370	18	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.3314	3.8686949999999998	4.40599	0.00517898	0.00154565	0.0992178	0.0389999
chrX	130222075	130222175	10429929	0	-	0.44	(0.424,0.459]	chrX	1034620	12	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.3314	3.8686949999999998	4.40599	0.00517898	0.00154565	0.0992178	0.0389999
chr16	69329496	69329587	8577827	0	-	0.538462	(0.526,0.57]	chr16	808764	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COG8:PDF	ENSG00000213380.16:ENSG00000258429.2	ENST00000562595.5:ENST00000306875.10:ENST00000288022.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	3.35701	3.868575	4.38014	8.61246e-6	6.74826e-7	4.81312e-4	4.89646e-5
chr1	228297104	228297201	449672	0	+	0.319588	[0,0.32]	chr1	48529	17	INTRON	INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000483539.3:ENST00000668629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.6742	3.868295	4.06239	0.00220802	3.10398e-4	0.053911	0.0109114
chr2	204800269	204800369	1277080	0	+	0.29	[0,0.32]	chr2	132846	1136	INTRON	INTRON	PARD3B	ENSG00000116117.19	ENST00000406610.7:ENST00000415947.1:ENST00000349953.7:ENST00000351153.5:ENST00000358768.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.75039	3.86805	3.98571	0.00182075	3.95466e-4	0.0469284	0.0132556
chr3	123949828	123949927	2415427	0	-	0.424242	(0.392,0.424]	chr3	231562	3	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	3.18804	3.867525	4.54701	0.00102713	3.14916e-4	0.0276375	0.0110581
chr16	2755237	2755336	8304786	0	+	0.515152	(0.49,0.526]	chr16	773096	12	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	109	2	3.45112	3.8675050000000004	4.28389	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	47280915	47281013	9754126	0	-	0.5	(0.49,0.526]	chr20	966706	38	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	3.60264	3.867325	4.13201	8.48086e-6	6.16325e-7	4.76746e-4	4.46883e-5
chr10	72351951	72352050	6158558	0	-	0.555556	(0.526,0.57]	chr10	551361	65	INTRON	INTRON	DNAJB12	ENSG00000148719.16	ENST00000338820.7:ENST00000394903.6:ENST00000444643.8:ENST00000461919.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.38516	3.86628	5.3474	0.00834853	1.05485e-6	0.145988	7.33447e-5
chr13	48427231	48427331	7376569	0	+	0.51	(0.49,0.526]	chr13	681714	454	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	3.48482	3.86538	4.24594	1.54551e-10	2.2777e-11	2.03039e-8	3.33003e-9
chr15	55360751	55360847	8177405	0	-	0.322917	(0.32,0.36]	chr15	758532	13	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	68	180	2	3.8405300000000002	3.8651150000000003	3.8897	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	101056455	101056555	8103887	0	+	0.48	(0.459,0.49]	chr15	749302	2	SS3_PROX	SS3_PROX:INTRON	LRRK1	ENSG00000154237.13	ENST00000388948.8:ENST00000525284.5:ENST00000531270.5:ENST00000526457.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.21669	3.86462	4.51255	6.3564e-4	5.63284e-4	0.0193151	0.0178211
chr9	33132291	33132391	5605039	0	-	0.48	(0.459,0.49]	chr9	501745	113	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.21669	3.86462	4.51255	6.3564e-4	5.63284e-4	0.0193151	0.0178211
chr10	61964200	61964300	5868216	0	+	0.57	(0.526,0.57]	chr10	526533	234	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	3.59214	3.8636299999999997	4.13512	2.49751e-8	2.16364e-8	2.36219e-6	2.09062e-6
chr17	35115071	35115170	8913957	0	-	0.50505	(0.49,0.526]	chr17	854345	73	INTRON	INTRON	RAD51D	ENSG00000185379.21	ENST00000345365.11:ENST00000588372.5:ENST00000394589.8:ENST00000586044.5:ENST00000335858.11:ENST00000588594.5:ENST00000587977.5:ENST00000590016.5:ENST00000586210.5:ENST00000460118.6:ENST00000587405.5:ENST00000592577.5:ENST00000590631.1:ENST00000415064.6:ENST00000587982.5:ENST00000592430.5:ENST00000585947.5:ENST00000585982.5:ENST00000585343.5:ENST00000586186.2:ENST00000592850.5:ENST00000592928.2:ENST00000589506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	3.81887	3.863085	3.9073	1.1017e-4	7.31994e-5	0.00452792	0.00316256
chr1	36227060	36227160	108580	0	+	0.44	(0.424,0.459]	chr1	12451	12	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.23804	3.8630299999999997	4.48802	0.00649971	0.00121831	0.114061	0.0326347
chr17	63032895	63032995	8770620	0	+	0.45	(0.424,0.459]	chr17	834640	229	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.23804	3.8630299999999997	4.48802	0.00649971	0.00121831	0.114061	0.0326347
chrX	132219069	132219169	10433940	0	-	0.44	(0.424,0.459]	chrX	1034886	3	SS5_PROX	SS5_PROX:INTRON	RAP2C	ENSG00000123728.10	ENST00000620646.4:ENST00000370874.2:ENST00000490400.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.23804	3.8630299999999997	4.48802	0.00649971	0.00121831	0.114061	0.0326347
chr16	89431526	89431626	8624164	0	-	0.47	(0.459,0.49]	chr16	813746	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	2.96081	3.8629100000000003	4.76501	4.52907e-4	1.46149e-4	0.0150584	0.00564049
chr19	52892983	52893083	9535255	0	-	0.4	(0.392,0.424]	chr19	942802	2	SS5_PROX	SS5_PROX:INTRON	ZNF320	ENSG00000182986.15	ENST00000673631.1:ENST00000594408.3:ENST00000600930.1:ENST00000682928.1:ENST00000595635.5:ENST00000593618.5:ENST00000594741.5:ENST00000597111.5:ENST00000601334.5:ENST00000597856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	11	2	3.10951	3.8612200000000003	4.61293	8.49057e-4	4.28069e-4	0.0240064	0.0141511
chr11	43743911	43744011	6381034	0	+	0.39	(0.36,0.392]	chr11	571585	194	INTRON	INTRON	HSD17B12	ENSG00000149084.13	ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1:ENST00000527213.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	16	2	3.45885	3.861175	4.2635	4.24507e-4	4.58367e-7	0.0140677	3.4135e-5
chr17	36502528	36502596	8915906	0	-	0.573529	(0.57,0.629]	chr17	854770	2	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.50295	3.8605799999999997	4.21821	0.00185391	6.5426e-4	0.0459841	0.0199608
chr2	98606799	98606895	1520127	0	-	0.604167	(0.57,0.629]	chr2	158378	11	INTRON	INTRON	COA5	ENSG00000183513.9	ENST00000328709.8:ENST00000483527.5:ENST00000409997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.50295	3.8605799999999997	4.21821	0.00185391	6.5426e-4	0.0459841	0.0199608
chr6	85642081	85642174	4120218	0	-	0.602151	(0.57,0.629]	chr6	375541	2	UTR5	UTR5:EXON_MRNA:INTRON	SYNCRIP	ENSG00000135316.19	ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	3.50295	3.8605799999999997	4.21821	0.00185391	6.5426e-4	0.0459841	0.0199608
chr8	22429108	22429208	4946072	0	+	0.59	(0.57,0.629]	chr8	442598	65	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000240095.10	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.50295	3.8605799999999997	4.21821	0.00185391	6.5426e-4	0.0459841	0.0199608
chr12	44068512	44068612	6885072	0	+	0.45	(0.424,0.459]	chr12	628131	1238	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.0068	3.86052	4.71424	0.00341471	3.07139e-4	0.0729529	0.0105767
chr4	165959605	165959705	2783511	0	+	0.29	[0,0.32]	chr4	263901	393	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	46	2	3.803	3.8592199999999997	3.91544	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	182864950	182865049	373034	0	+	0.373737	(0.36,0.392]	chr1	40357	44	INTRON	INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	3.63053	3.8584899999999998	4.08645	1.23682e-4	1.09566e-6	0.0049353	7.63801e-5
chr1	207346349	207346449	417082	0	+	0.57	(0.526,0.57]	chr1	45014	54	INTRON	INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695827.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	3.02269	3.858155	4.69362	1.98837e-4	1.37862e-4	0.00746609	0.00543389
chr3	29515975	29516075	1812519	0	+	0.4	(0.392,0.424]	chr3	183985	271	INTRON	INTRON	RBMS3	ENSG00000144642.22	ENST00000636680.2:ENST00000637842.1:ENST00000434693.6:ENST00000383767.7:ENST00000445033.5:ENST00000383766.6:ENST00000273139.13:ENST00000452462.5:ENST00000456853.1:ENST00000497205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	3.73536	3.857465	3.97957	3.4035e-5	4.95123e-6	0.0016098	2.96695e-4
chr6	36085797	36085897	3766193	0	+	0.39	(0.36,0.392]	chr6	344238	88	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	56	2	3.18777	3.85736	4.52695	1.5505900000000002e-11	1e-12	2.31002e-9	1.73382e-10
chr2	222620137	222620237	1702792	0	-	0.44	(0.424,0.459]	chr2	175163	4	SS3_PROX	SS3_PROX:INTRON	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	3.80014	3.8571999999999997	3.91426	3.54639e-4	1.12148e-7	0.0120332	9.48939e-6
chr10	1095275	1095373	5774939	0	+	0.479592	(0.459,0.49]	chr10	520090	14	INTRON	INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000381329.5:ENST00000650072.1:ENST00000436154.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.13407	3.856915	4.57976	7.72738e-4	4.98571e-4	0.0225969	0.0160179
chr15	63621524	63621623	8209458	0	-	0.454545	(0.424,0.459]	chr15	761046	45	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	13	49	2	3.69541	3.8563549999999998	4.0173	3.11406e-12	1e-12	5.07746e-10	1.72912e-10
chr9	128332943	128333043	5501412	0	+	0.56	(0.526,0.57]	chr9	492184	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COQ4	ENSG00000167113.11	ENST00000300452.8:ENST00000461102.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	30	2	3.76492	3.855295	3.94567	3.05141e-7	6.30848e-8	2.36544e-5	5.49242e-6
chr8	38415964	38416060	5159690	0	-	0.614583	(0.57,0.629]	chr8	462141	2	CDS	CDS:UTR3:EXON_MRNA	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000526570.5:ENST00000674474.1:ENST00000683132.1:ENST00000397103.5:ENST00000524528.2:ENST00000682398.1:ENST00000397108.8:ENST00000533619.5:ENST00000527114.5:ENST00000487647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	77	412	2	3.47488	3.8543950000000002	4.23391	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	184920506	184920606	822790	0	-	0.44	(0.424,0.459]	chr1	91293	208	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	2.90943	3.85323	4.79703	0.00449434	2.28148e-4	0.0875511	0.00827964
chr5	131299004	131299104	3315194	0	+	0.44	(0.424,0.459]	chr5	304072	345	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	2.90943	3.85323	4.79703	0.00449434	2.28148e-4	0.0875511	0.00827964
chr17	38305236	38305336	8707733	0	+	0.52	(0.49,0.526]	chr17	825127	54	INTRON	INTRON	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.63247	3.8525350000000005	4.0726	3.91053e-4	1.93553e-5	0.0131535	9.87839e-4
chr17	77449467	77449567	8807644	0	+	0.59	(0.57,0.629]	chr17	838999	219	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	3.42043	3.8523250000000004	4.28422	0.00145677	9.02612e-4	0.0382827	0.0258498
chr20	53096703	53096803	9673846	0	+	0.5	(0.49,0.526]	chr20	955958	1230	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.72059	3.852255	3.98392	2.73826e-4	3.07012e-5	0.00975361	0.00150487
chr6	136395889	136395989	4209305	0	-	0.35	(0.32,0.36]	chr6	383026	60	INTRON	INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000544465.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	3.39734	3.85154	4.30574	9.1809e-8	2.57957e-9	7.86986e-6	2.88765e-7
chr2	113490276	113490375	1127736	0	+	0.393939	(0.392,0.424]	chr2	120777	77	INTRON	INTRON	CBWD2	ENSG00000136682.16	ENST00000259199.9:ENST00000416503.6:ENST00000358604.7:ENST00000456188.5:ENST00000479583.5:ENST00000468417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	82	2	3.45596	3.85019	4.24442	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	127476480	127476578	5497735	0	+	0.397959	(0.392,0.424]	chr9	491396	22	INTRON	INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.15287	3.84994	4.54701	0.00224427	0.00102713	0.0552099	0.0276375
chr1	32019353	32019452	96072	0	+	0.474747	(0.459,0.49]	chr1	10618	46	INTRON	INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	61334183	61334283	167454	0	+	0.46	(0.459,0.49]	chr1	19235	12	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	151094777	151094876	296673	0	+	0.474747	(0.459,0.49]	chr1	31651	10	INTRON	INTRON	GABPB2	ENSG00000143458.12	ENST00000462520.5:ENST00000368918.8:ENST00000489549.5:ENST00000486076.5:ENST00000368916.1:ENST00000467551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	172427066	172427166	804677	0	-	0.46	(0.459,0.49]	chr1	89729	113	INTRON	INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	186396413	186396513	384774	0	+	0.48	(0.459,0.49]	chr1	41380	20	INTRON	INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	205117973	205118073	844174	0	-	0.49	(0.459,0.49]	chr1	93892	17	INTRON	INTRON	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11:ENST00000484379.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr1	220560979	220561079	434299	0	+	0.47	(0.459,0.49]	chr1	46700	93	INTRON	INTRON	MARK1	ENSG00000116141.17	ENST00000366917.6:ENST00000402574.5:ENST00000611084.4:ENST00000485104.2:ENST00000366918.8:ENST00000677505.1:ENST00000677041.1:ENST00000678353.1:ENST00000677173.1:ENST00000678922.1:ENST00000676500.1:ENST00000679033.1:ENST00000678435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr10	22707759	22707859	6082324	0	-	0.47	(0.459,0.49]	chr10	545184	161	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr10	68933698	68933798	5874516	0	+	0.46	(0.459,0.49]	chr10	527061	1	SS3_PROX	SS3_PROX:INTRON	DDX50	ENSG00000107625.14	ENST00000373585.8:ENST00000460470.1:ENST00000466265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr11	10252943	10253043	6562028	0	-	0.46	(0.459,0.49]	chr11	596549	586	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr11	12926729	12926827	6327439	0	+	0.469388	(0.459,0.49]	chr11	567919	13	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr11	36162100	36162200	6375388	0	+	0.46	(0.459,0.49]	chr11	571096	517	INTRON	INTRON	LDLRAD3	ENSG00000179241.13	ENST00000528989.5:ENST00000524419.5:ENST00000315571.6:ENST00000532490.1:ENST00000534091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr11	63947203	63947303	6410815	0	+	0.48	(0.459,0.49]	chr11	575748	2	SS5_PROX	SS5_PROX:INTRON	NAA40	ENSG00000110583.13	ENST00000338447.10:ENST00000536939.1:ENST00000534965.5:ENST00000377793.9:ENST00000544138.5:ENST00000539656.5:ENST00000542163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr11	95896061	95896161	6712744	0	-	0.48	(0.459,0.49]	chr11	613384	74	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	4607487	4607587	6808834	0	+	0.48	(0.459,0.49]	chr12	621390	1	SS5_PROX	SS5_PROX:INTRON	DYRK4	ENSG00000010219.14	ENST00000543431.6:ENST00000540757.6:ENST00000010132.6:ENST00000545571.5:ENST00000536137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	6934770	6934862	6813590	0	+	0.478261	(0.459,0.49]	chr12	622540	2	SS5_PROX	SS5_PROX:INTRON	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	31074527	31074627	6863295	0	+	0.47	(0.459,0.49]	chr12	626661	2	SS5_PROX	SS5_PROX:INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000535317.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	53477438	53477536	6915119	0	+	0.469388	(0.459,0.49]	chr12	631096	15	INTRON	INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	76418118	76418218	7213505	0	-	0.47	(0.459,0.49]	chr12	665550	71	INTRON	INTRON	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000546946.5:ENST00000548341.5:ENST00000553139.5:ENST00000549570.5:ENST00000550628.5:ENST00000549646.5	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	111566900	111567000	7280583	0	-	0.46	(0.459,0.49]	chr12	671163	106	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr12	113260892	113260992	7028127	0	+	0.48	(0.459,0.49]	chr12	643445	4	SS5_PROX	SS5_PROX:INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000552077.5:ENST00000541517.5:ENST00000392569.8:ENST00000552542.5:ENST00000428632.7:ENST00000548465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr13	49779752	49779852	7525968	0	-	0.49	(0.459,0.49]	chr13	692284	324	INTRON	INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr13	95255629	95255729	7551977	0	-	0.47	(0.459,0.49]	chr13	694477	75	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr13	100391257	100391357	7437241	0	+	0.49	(0.459,0.49]	chr13	684771	223	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000424527.5:ENST00000458283.5:ENST00000413170.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr13	111191681	111191781	7447072	0	+	0.46	(0.459,0.49]	chr13	685704	43	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5:ENST00000426073.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr14	31294504	31294604	7794885	0	-	0.49	(0.459,0.49]	chr14	717818	4	SS3_PROX	SS3_PROX:INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000551414.1:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr15	55732406	55732506	8180629	0	-	0.48	(0.459,0.49]	chr15	758801	481	INTRON	INTRON	PRTG	ENSG00000166450.13	ENST00000389286.9	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr15	72357498	72357596	8233080	0	-	0.469388	(0.459,0.49]	chr15	764219	9	EXON_MRNA	EXON_MRNA:INTRON	HEXA	ENSG00000213614.11	ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr15	78034052	78034151	8254117	0	-	0.474747	(0.459,0.49]	chr15	766023	35	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7:ENST00000435468.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr15	78452049	78452148	8047898	0	+	0.464646	(0.459,0.49]	chr15	743819	118	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr17	4083793	4083891	8849346	0	-	0.469388	(0.459,0.49]	chr17	845456	9	INTRON	INTRON	ZZEF1	ENSG00000074755.15	ENST00000381638.7:ENST00000574474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr17	39356922	39357022	8926026	0	-	0.48	(0.459,0.49]	chr17	856396	133	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr17	44826037	44826137	8943517	0	-	0.48	(0.459,0.49]	chr17	860072	129	INTRON	INTRON	GJC1	ENSG00000182963.11	ENST00000590758.3:ENST00000592524.6:ENST00000591424.5:ENST00000586267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr17	46213389	46213489	8949544	0	-	0.48	(0.459,0.49]	chr17	860888	196	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr17	75389284	75389383	9010439	0	-	0.484848	(0.459,0.49]	chr17	869141	11	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1:ENST00000583912.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr18	54215634	54215734	9230098	0	-	0.46	(0.459,0.49]	chr18	888876	101	INTRON	INTRON	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000398398.6:ENST00000583046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr19	14034479	14034577	9295509	0	+	0.489796	(0.459,0.49]	chr19	899066	16	INTRON	INTRON	IL27RA	ENSG00000104998.4	ENST00000263379.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr2	23767124	23767223	1394321	0	-	0.474747	(0.459,0.49]	chr2	144489	11	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr2	28190457	28190557	966910	0	+	0.49	(0.459,0.49]	chr2	105638	607	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr2	36365516	36365616	989454	0	+	0.47	(0.459,0.49]	chr2	107794	85	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1:ENST00000428774.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr2	61955181	61955281	1046045	0	+	0.49	(0.459,0.49]	chr2	111748	362	INTRON	INTRON	COMMD1	ENSG00000173163.11	ENST00000472729.1:ENST00000471704.1:ENST00000445644.5:ENST00000311832.6:ENST00000455659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr20	32424275	32424375	9626628	0	+	0.49	(0.459,0.49]	chr20	950170	519	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr20	44953682	44953780	9749224	0	-	0.469388	(0.459,0.49]	chr20	965852	13	INTRON	INTRON	TOMM34	ENSG00000025772.8	ENST00000372813.4	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr21	32586227	32586324	9857648	0	-	0.463918	(0.459,0.49]	chr21	978414	8	INTRON	INTRON	TCP10L	ENSG00000242220.9	ENST00000582575.2	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr22	20108193	20108292	9897046	0	+	0.484848	(0.459,0.49]	chr22	982437	9	EXON_MRNA	EXON_MRNA:INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000485802.1:ENST00000475941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr22	28354922	28355022	10004852	0	-	0.47	(0.459,0.49]	chr22	996538	479	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr3	196475712	196475812	2531366	0	-	0.49	(0.459,0.49]	chr3	242671	4	SS3_PROX	SS3_PROX:INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr4	86976067	86976166	2680952	0	+	0.484848	(0.459,0.49]	chr4	255318	21	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr4	109028271	109028371	2990402	0	-	0.46	(0.459,0.49]	chr4	280097	175	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr5	54069816	54069916	3465043	0	-	0.46	(0.459,0.49]	chr5	318465	1821	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr5	77738711	77738811	3507227	0	-	0.49	(0.459,0.49]	chr5	321228	235	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr5	131300202	131300302	3315206	0	+	0.48	(0.459,0.49]	chr5	304072	357	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr6	25348563	25348663	3744721	0	+	0.49	(0.459,0.49]	chr6	339245	633	INTRON	INTRON	CARMIL1	ENSG00000079691.18	ENST00000461945.1:ENST00000329474.7	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr6	112168454	112168553	4171031	0	-	0.474747	(0.459,0.49]	chr6	379919	28	INTRON	INTRON	LAMA4	ENSG00000112769.20	ENST00000230538.12:ENST00000389463.9:ENST00000522006.5:ENST00000424408.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr7	105154826	105154926	4797941	0	-	0.47	(0.459,0.49]	chr7	431036	78	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000485455.1:ENST00000489828.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr7	127875407	127875507	4536525	0	+	0.48	(0.459,0.49]	chr7	407873	306	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr7	129229637	129229737	4542104	0	+	0.47	(0.459,0.49]	chr7	408714	38	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr8	144101980	144102075	5308154	0	-	0.473684	(0.459,0.49]	chr8	474629	13	INTRON	INTRON	SHARPIN	ENSG00000179526.17	ENST00000359551.6:ENST00000398712.7:ENST00000534242.5:ENST00000533948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr9	15497399	15497498	5582023	0	-	0.484848	(0.459,0.49]	chr9	500667	48	INTRON	INTRON	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chrX	13740811	13740909	10084449	0	+	0.479592	(0.459,0.49]	chrX	1005822	2	INTRON	INTRON	OFD1	ENSG00000046651.16	ENST00000380567.6:ENST00000684577.1:ENST00000683427.1:ENST00000683284.1:ENST00000683713.1:ENST00000340096.11:ENST00000682953.1:ENST00000682237.1:ENST00000464463.6:ENST00000683655.1:ENST00000682562.1:ENST00000398395.8:ENST00000380550.6:ENST00000683055.1:ENST00000490265.6:ENST00000683454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	6	2	3.81712	3.8497950000000003	3.88247	0.0120499	0.0104144	0.184357	0.170122
chr7	72611976	72612075	4726906	0	-	0.414141	(0.392,0.424]	chr7	423890	359	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	2.84278	3.84966	4.85654	0.00949728	1.84333e-4	0.16275	0.00688171
chr1	93746925	93747025	697598	0	-	0.43	(0.424,0.459]	chr1	75481	230	INTRON	INTRON	BCAR3	ENSG00000137936.18	ENST00000370244.5:ENST00000469315.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	3.80014	3.847455	3.89477	3.54639e-4	2.5121e-4	0.0120332	0.00902798
chr5	5423995	5424095	3112257	0	+	0.45	(0.424,0.459]	chr5	288326	6	INTRON	INTRON	ICE1	ENSG00000164151.12	ENST00000512608.5:ENST00000296564.9:ENST00000505464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	3.67696	3.84697	4.01698	2.06956e-6	1.35151e-8	1.34728e-4	1.35132e-6
chr17	1050834	1050934	8834307	0	-	0.69	(0.629,1]	chr17	843026	2	SS3_PROX	SS3_PROX:INTRON	ABR	ENSG00000159842.16	ENST00000574139.7:ENST00000302538.10:ENST00000544583.6:ENST00000574437.5:ENST00000291107.6:ENST00000536794.6:ENST00000575770.5:ENST00000576964.5:ENST00000574544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.86171	3.846865	4.83202	8.48224e-4	4.13761e-5	0.0240064	0.00192437
chr3	128157919	128158019	1983779	0	+	0.34	(0.32,0.36]	chr3	199739	37	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1:ENST00000484438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	3.31131	3.8465750000000005	4.38184	0.0111187	1.66191e-5	0.179068	8.55383e-4
chr4	42051267	42051366	2614626	0	+	0.323232	(0.32,0.36]	chr4	250404	14	INTRON	INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.31131	3.8465750000000005	4.38184	0.0111187	1.66191e-5	0.179068	8.55383e-4
chr22	23881677	23881774	9905774	0	+	0.505155	(0.49,0.526]	chr22	983844	14	EXON_MRNA	EXON_MRNA:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	94	2	3.70633	3.84595	3.98557	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	90955583	90955683	685222	0	-	0.43	(0.424,0.459]	chr1	74542	139	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	36	2	3.49912	3.845865	4.19261	4.4396e-8	1.51694e-11	4.04882e-6	2.27994e-9
chr6	169669520	169669615	4279805	0	-	0.336842	(0.32,0.36]	chr6	387636	1	EXON_MRNA	EXON_MRNA:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1:ENST00000546953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	58	2	3.74908	3.8456	3.94212	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	35261536	35261636	9210587	0	-	0.4	(0.392,0.424]	chr18	887048	10	UTR3	UTR3:EXON_MRNA:INTRON	ZSCAN30	ENSG00000186814.14	ENST00000610712.1:ENST00000333206.10:ENST00000420878.7:ENST00000639929.1:ENST00000589178.5	protein_coding	protein_coding	protein_coding	protein_coding	12	41	2	3.4166	3.845295	4.27399	5.17942e-9	1e-12	5.50852e-7	1.72912e-10
chr11	70397298	70397398	6635125	0	-	0.51	(0.49,0.526]	chr11	607878	157	INTRON	INTRON	CTTN-DT	ENSG00000246889.3	ENST00000530690.1:ENST00000500185.2:ENST00000524619.2	lncRNA	lncRNA	lncRNA	lncRNA	6	34	2	3.83953	3.84484	3.85015	9.88149e-7	3.99004e-10	6.99627e-5	4.9727e-8
chr3	129436923	129437019	2432578	0	-	0.375	(0.36,0.392]	chr3	233240	6	CDS	CDS:EXON_MRNA:INTRON	MBD4	ENSG00000129071.10	ENST00000429544.7:ENST00000249910.5:ENST00000393278.6:ENST00000503197.5:ENST00000509828.1:ENST00000507208.1:ENST00000509587.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	72	2	3.53494	3.84476	4.15458	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	44465935	44466029	8942645	0	-	0.37234	(0.36,0.392]	chr17	859987	1	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.52068	3.8436500000000002	4.16662	0.00324516	9.16296e-5	0.0730386	0.00387303
chr17	39724010	39724110	8712531	0	+	0.59	(0.57,0.629]	chr17	826000	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000578373.5:ENST00000583038.5:ENST00000580074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	257	1404	2	3.75626	3.842525	3.92879	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	109579298	109579398	5249233	0	-	0.56	(0.526,0.57]	chr8	469392	1	SS5_PROX	SS5_PROX:INTRON	SYBU	ENSG00000147642.17	ENST00000533895.5:ENST00000276646.14:ENST00000532779.5:ENST00000424158.6:ENST00000446070.6:ENST00000528331.5:ENST00000399066.7:ENST00000528647.5:ENST00000529175.5:ENST00000422135.5:ENST00000408889.7:ENST00000408908.6:ENST00000433638.1:ENST00000440310.5:ENST00000533065.5:ENST00000529690.5:ENST00000533171.5:ENST00000533394.5:ENST00000527707.5:ENST00000532594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	58	2	3.68703	3.8424050000000003	3.99778	1.57807e-12	1e-12	2.6558e-10	1.72912e-10
chr22	17048823	17048923	9891007	0	+	0.48	(0.459,0.49]	chr22	981653	10	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	70	2	3.74914	3.8420300000000003	3.93492	1.16662e-12	1e-12	2.00754e-10	1.72912e-10
chr22	21779570	21779670	9994050	0	-	0.28	[0,0.32]	chr22	995352	62	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.4411	3.841425	4.24175	9.57415e-4	6.90565e-5	0.0269423	0.00300464
chr4	1744517	1744570	2544413	0	+	0.509434	(0.49,0.526]	chr4	244448	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000651817.1:ENST00000484264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	268	1250	2	3.69263	3.840655	3.98868	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	12169157	12169251	6049248	0	-	0.446809	(0.424,0.459]	chr10	543063	10	INTRON	INTRON	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000476462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	15	2	3.47733	3.84047	4.20361	2.01844e-4	1.79381e-5	0.00755335	9.13813e-4
chr1	184916807	184916907	822753	0	-	0.45	(0.424,0.459]	chr1	91293	171	INTRON	INTRON	NIBAN1	ENSG00000135842.17	ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	3.44138	3.8403099999999997	4.23924	1.51347e-5	1.17415e-7	8.01855e-4	9.92979e-6
chr8	61694433	61694533	5180152	0	-	0.44	(0.424,0.459]	chr8	464328	47	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517856.5:ENST00000379449.10	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	3.69974	3.84018	3.98062	2.41657e-6	9.50281e-7	1.5318e-4	6.73936e-5
chrX	49031805	49031892	10340421	0	-	0.528736	(0.526,0.57]	chrX	1026722	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TFE3	ENSG00000068323.17	ENST00000493583.5:ENST00000315869.8:ENST00000495940.2:ENST00000487451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.83139	3.839665	4.84794	0.00350122	6.50622e-5	0.0746524	0.00284455
chr19	53577690	53577771	9385205	0	+	0.45679	(0.424,0.459]	chr19	915395	4	CDS	CDS:EXON_MRNA	ZNF331	ENSG00000130844.19	ENST00000648236.1:ENST00000253144.13:ENST00000649326.1:ENST00000511593.6:ENST00000511154.5:ENST00000449416.6:ENST00000648122.1:ENST00000513999.5:ENST00000512387.6:ENST00000648511.1:ENST00000648397.1:ENST00000504493.6	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	3.37907	3.8389800000000003	4.29889	2.98646e-4	1.12945e-5	0.0104901	6.02727e-4
chr17	1653360	1653450	8839058	0	-	0.433333	(0.424,0.459]	chr17	843772	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000575116.1:ENST00000576585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	15	2	3.56675	3.83884	4.11093	7.38392e-5	5.36389e-5	0.0032006	0.00243585
chr2	11286604	11286639	1381353	0	-	0.314286	[0,0.32]	chr2	143162	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	49	2	3.29473	3.8383700000000003	4.38201	7.44228e-11	1e-12	1.01575e-8	1.72912e-10
chr18	47926499	47926597	9219328	0	-	0.489796	(0.459,0.49]	chr18	888168	30	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.81712	3.838245	3.85937	0.0120499	1.54766e-4	0.184357	0.00599593
chr3	142825906	142826006	2460215	0	-	0.49	(0.459,0.49]	chr3	236337	19	INTRON	INTRON	PCOLCE2	ENSG00000163710.9	ENST00000470310.5:ENST00000295992.8:ENST00000470795.5:ENST00000648195.1:ENST00000485766.1:ENST00000480473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.81712	3.838245	3.85937	0.0120499	1.54766e-4	0.184357	0.00599593
chr4	51885719	51885806	2618291	0	+	0.436782	(0.424,0.459]	chr4	250892	4	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000381441.7:ENST00000504113.5:ENST00000502930.5:ENST00000334635.10:ENST00000507741.5:ENST00000477560.5:ENST00000509068.5:ENST00000451288.6:ENST00000505403.5:ENST00000504923.5:ENST00000510587.5:ENST00000507659.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	73	2	3.82068	3.837485	3.85429	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	74459168	74459268	4429232	0	+	0.64	(0.629,1]	chr7	398064	46	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.46913	3.83694	4.20475	3.04018e-4	5.9027e-7	0.0105767	4.28474e-5
chr3	174453917	174454017	2090836	0	+	0.38	(0.36,0.392]	chr3	206467	125	INTRON	INTRON	NAALADL2	ENSG00000177694.16	ENST00000491329.5:ENST00000482228.5:ENST00000481679.5:ENST00000478624.1:ENST00000495900.5:ENST00000434257.1:ENST00000489729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	22	2	3.27423	3.836605	4.39898	5.03797e-6	8.56612e-8	2.97036e-4	7.38607e-6
chr11	991702	991798	6295482	0	+	0.708333	(0.629,1]	chr11	564311	27	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.84021	3.836115	4.83202	0.00897489	4.13761e-5	0.155806	0.00192437
chr8	141000779	141000879	5300439	0	-	0.76	(0.629,1]	chr8	473232	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	3.33315	3.83607	4.33899	8.51164e-4	2.27928e-5	0.0245129	0.00115649
chrX	24957730	24957830	10108615	0	+	0.46	(0.459,0.49]	chrX	1007785	268	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.39129	3.8360149999999997	4.28074	0.00244536	3.57604e-6	0.0587626	2.18487e-4
chr17	42384252	42384352	8934004	0	-	0.52	(0.49,0.526]	chr17	858209	97	INTRON	INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000678659.1:ENST00000678108.1:ENST00000678529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	2.62651	3.8341450000000004	5.04178	0.00258005	1.57703e-5	0.0617778	8.20905e-4
chr17	57304949	57305048	8748943	0	+	0.454545	(0.424,0.459]	chr17	832997	98	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	10	2	3.26116	3.8335749999999997	4.40599	0.00154565	8.43922e-4	0.0389999	0.0240064
chr6	63695064	63695164	3803194	0	+	0.43	(0.424,0.459]	chr6	348837	3	SS5_PROX	SS5_PROX:INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000509876.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.26116	3.8335749999999997	4.40599	0.00154565	8.43922e-4	0.0389999	0.0240064
chr7	55191874	55191974	4391633	0	+	0.53	(0.526,0.57]	chr7	395560	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	3.4704	3.83286	4.19532	4.12702e-5	5.88525e-6	0.00192437	3.44579e-4
chr10	121485394	121485463	6274087	0	-	0.478261	(0.459,0.49]	chr10	561480	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000683885.1:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	75	314	2	3.78503	3.832385	3.87974	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	111884371	111884468	1954337	0	+	0.402062	(0.392,0.424]	chr3	196638	3	CDS	CDS:EXON_MRNA	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000478922.1:ENST00000477695.5:ENST00000393925.7:ENST00000481953.5	protein_coding	protein_coding	protein_coding	protein_coding	9	32	2	2.91247	3.831215	4.74996	2.63771e-5	1e-12	0.00130428	1.72912e-10
chr14	71574386	71574486	7688068	0	+	0.48	(0.459,0.49]	chr14	706589	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000381232.8:ENST00000554362.5:ENST00000555652.5:ENST00000557151.5:ENST00000557712.1:ENST00000555818.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.77994	3.8312049999999997	3.88247	0.0104144	2.14818e-4	0.170122	0.00789628
chr16	87737728	87737828	8618790	0	-	0.46	(0.459,0.49]	chr16	812876	67	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.77994	3.8312049999999997	3.88247	0.0104144	2.14818e-4	0.170122	0.00789628
chr16	14919244	14919336	8331328	0	+	0.673913	(0.629,1]	chr16	775988	1	EXON_PSEUDO	EXON_PSEUDO	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	1	17	2	3.7237	3.82995	3.9362	0.0052327	4.75614e-5	0.0992178	0.00218277
chr3	15046337	15046436	2183393	0	-	0.434343	(0.424,0.459]	chr3	213331	42	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MRPS25	ENSG00000131368.9	ENST00000695375.1:ENST00000695376.1:ENST00000695377.1:ENST00000695378.1:ENST00000695379.1:ENST00000695380.1:ENST00000695381.1:ENST00000695382.1:ENST00000496484.2:ENST00000695334.1:ENST00000695384.1:ENST00000695322.1:ENST00000447299.2:ENST00000695383.1:ENST00000474866.2:ENST00000695385.1:ENST00000695386.1:ENST00000420267.6:ENST00000695387.1:ENST00000695388.1:ENST00000695389.1:ENST00000695390.1:ENST00000695391.1:ENST00000695392.1:ENST00000449354.7:ENST00000695393.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.5463	3.828615	4.11093	0.00153741	5.36389e-5	0.0389999	0.00243585
chr12	20446609	20446709	6842830	0	+	0.32	[0,0.32]	chr12	625044	760	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	13	2	3.67128	3.828495	3.98571	3.95466e-4	1.892e-5	0.0132556	9.68233e-4
chr15	67223000	67223100	8221345	0	-	0.44	(0.424,0.459]	chr15	762903	19	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding	13	48	2	3.51987	3.82824	4.13661	3.39696e-11	1e-12	4.8604e-9	1.73382e-10
chrX	73827190	73827290	10373479	0	-	0.58	(0.57,0.629]	chrX	1029941	67	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	17	106	2	3.35212	3.82812	4.30412	1.29929e-12	1e-12	2.2166600000000001e-10	1.72912e-10
chr9	136865680	136865780	5768778	0	-	0.67	(0.629,1]	chr9	518870	1	SS5_PROX	SS5_PROX:INTRON	EDF1	ENSG00000107223.13	ENST00000224073.6:ENST00000371649.5:ENST00000371648.4	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.91389	3.8277900000000002	4.74169	5.22361e-4	7.88558e-5	0.0167376	0.00339056
chr2	30605915	30606015	976072	0	+	0.52	(0.49,0.526]	chr2	106563	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	3.50759	3.8269399999999996	4.14629	1.23181e-6	3.79367e-8	8.42538e-5	3.46316e-6
chr3	36541912	36542011	1827402	0	+	0.454545	(0.424,0.459]	chr3	184875	126	INTRON	INTRON	STAC	ENSG00000144681.11	ENST00000457375.6:ENST00000273183.8	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.64041	3.826935	4.01346	0.00778514	0.00115507	0.130982	0.0316008
chr1	155926020	155926097	779217	0	-	0.402597	(0.392,0.424]	chr1	86099	2	SS3_PROX	SS3_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	60	183	2	3.49808	3.82692	4.15576	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	41165008	41165108	580662	0	-	0.43	(0.424,0.459]	chr1	65835	21	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.16328	3.8256499999999996	4.48802	0.00121831	0.0011776	0.0326347	0.0313499
chr3	125361114	125361214	2419271	0	-	0.42	(0.392,0.424]	chr3	231886	34	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.47186	3.82524	4.17862	0.00366403	4.01331e-5	0.0766409	0.00187621
chr6	158470988	158471087	3959025	0	+	0.40404	(0.392,0.424]	chr6	359283	89	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000367097.8:ENST00000367094.6:ENST00000616856.1:ENST00000613390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.47186	3.82524	4.17862	0.00366403	4.01331e-5	0.0766409	0.00187621
chr22	23881969	23882067	9905777	0	+	0.479592	(0.459,0.49]	chr22	983844	17	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC2A11	ENSG00000133460.20	ENST00000345044.10:ENST00000398356.6:ENST00000467660.5:ENST00000405286.6:ENST00000489322.5:ENST00000255830.7:ENST00000611880.4:ENST00000316185.9:ENST00000405340.6:ENST00000461809.5:ENST00000482576.1:ENST00000472526.1:ENST00000473357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	67	2	3.80324	3.825075	3.84691	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	2756794	2756882	8304803	0	+	0.522727	(0.49,0.526]	chr16	773103	2	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	3.81887	3.82442	3.82997	1.1017e-4	1.86335e-6	0.00452792	1.21822e-4
chr19	53102164	53102264	9536908	0	-	0.5	(0.49,0.526]	chr19	943018	60	INTRON	INTRON	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000599247.5:ENST00000355147.9:ENST00000597112.5:ENST00000602095.5:ENST00000596966.5:ENST00000594760.1:ENST00000600924.1:ENST00000599980.1:ENST00000596388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	35	2	3.40263	3.8242849999999997	4.24594	4.0386e-6	2.2777e-11	2.43063e-4	3.33003e-9
chr20	49281393	49281464	9669217	0	+	0.507042	(0.49,0.526]	chr20	955624	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	3	20	2	3.16666	3.822495	4.47833	4.28046e-4	3.41555e-7	0.0141511	2.60631e-5
chr17	28612261	28612313	8898646	0	-	0.538462	(0.526,0.57]	chr17	852372	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ENSG00000258472:RSKR	ENSG00000258472.9:ENSG00000167524.16	ENST00000481916.6:ENST00000531839.5:ENST00000577790.2:ENST00000584196.1:ENST00000301037.11:ENST00000494272.6:ENST00000581199.5:ENST00000526073.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	28	2	3.66914	3.822045	3.97495	3.21576e-5	6.36654e-9	0.00156852	6.69942e-7
chr5	95960277	95960376	3552386	0	-	0.515152	(0.49,0.526]	chr5	323481	169	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000635633.1:ENST00000515020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.25397	3.82186	4.38975	0.00365962	9.92102e-4	0.0766409	0.0276375
chr7	98386783	98386883	4785121	0	-	0.52	(0.49,0.526]	chr7	428613	3	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.25397	3.82186	4.38975	0.00365962	9.92102e-4	0.0766409	0.0276375
chr8	143252975	143253063	5099266	0	+	0.511364	(0.49,0.526]	chr8	456410	2	UTR3	UTR3:EXON_MRNA:INTRON	ZFP41	ENSG00000181638.20	ENST00000520584.6:ENST00000330701.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.25397	3.82186	4.38975	0.00365962	9.92102e-4	0.0766409	0.0276375
chr10	131954783	131954883	6024722	0	+	0.59	(0.57,0.629]	chr10	540566	66	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000490777.3:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	3.72371	3.821205	3.9187	1.55132e-7	3.56034e-8	1.28188e-5	3.27617e-6
chr1	198157676	198157776	389594	0	+	0.6	(0.57,0.629]	chr1	41963	4	SS5_PROX	SS5_PROX:INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	3.55646	3.8211449999999996	4.08583	3.507e-7	1.57143e-8	2.66915e-5	1.55217e-6
chr1	52495126	52495226	618700	0	-	0.34	(0.32,0.36]	chr1	68949	3	SS5_PROX	SS5_PROX:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000473856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr12	4340051	4340151	6807911	0	+	0.35	(0.32,0.36]	chr12	621196	25	INTRON	INTRON	TIGAR	ENSG00000078237.7	ENST00000635110.1:ENST00000179259.6:ENST00000537251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr12	22454638	22454734	7107459	0	-	0.34375	(0.32,0.36]	chr12	653347	2	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000539615.1	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr12	79791776	79791875	7218153	0	-	0.353535	(0.32,0.36]	chr12	665770	9	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546762.5:ENST00000550903.5:ENST00000550299.5:ENST00000546369.5:ENST00000550107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr14	35577899	35577999	7805871	0	-	0.36	(0.32,0.36]	chr14	718706	48	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000554573.5:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr19	19013430	19013530	9459729	0	-	0.34	(0.32,0.36]	chr19	930500	27	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr20	47273915	47274015	9754055	0	-	0.36	(0.32,0.36]	chr20	966700	111	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr22	17715603	17715703	9894705	0	+	0.36	(0.32,0.36]	chr22	981986	84	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1:ENST00000485631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr3	100415119	100415218	1939715	0	+	0.323232	(0.32,0.36]	chr3	195578	123	INTRON	INTRON	LNP1	ENSG00000206535.8	ENST00000466996.5:ENST00000383693.8:ENST00000489752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr5	250118	250215	3106883	0	+	0.329897	(0.32,0.36]	chr5	287706	12	EXON_MRNA	EXON_MRNA:INTRON	SDHA	ENSG00000073578.18	ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000511810.5:ENST00000515815.5:ENST00000509082.1:ENST00000503674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr5	43109481	43109581	3167003	0	+	0.34	(0.32,0.36]	chr5	292333	103	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000507393.1	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr5	77721715	77721815	3507057	0	-	0.34	(0.32,0.36]	chr5	321228	65	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	6	2	3.31131	3.8204149999999997	4.32952	0.0111187	0.00388505	0.179068	0.0816719
chr1	155225587	155225686	774553	0	-	0.454545	(0.424,0.459]	chr1	85342	1	INTRON	INTRON	GBAP1	ENSG00000160766.15	ENST00000693149.1:ENST00000693267.1:ENST00000689837.1:ENST00000693749.1:ENST00000688506.1:ENST00000691165.1:ENST00000368374.5:ENST00000463838.6	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	8	2	3.5463	3.8202800000000003	4.09426	0.00651192	0.00153741	0.116758	0.0389999
chr1	157136465	157136565	784238	0	-	0.43	(0.424,0.459]	chr1	87344	1	SS3_PROX	SS3_PROX:INTRON	ETV3	ENSG00000117036.12	ENST00000368192.9:ENST00000326786.4:ENST00000460850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.5463	3.8202800000000003	4.09426	0.00651192	0.00153741	0.116758	0.0389999
chr2	207987462	207987561	1680854	0	-	0.454545	(0.424,0.459]	chr2	172773	95	INTRON	INTRON	PLEKHM3	ENSG00000178385.15	ENST00000427836.8:ENST00000457206.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.5463	3.8202800000000003	4.09426	0.00651192	0.00153741	0.116758	0.0389999
chr4	82373912	82373991	2932221	0	-	0.64557	(0.629,1]	chr4	275772	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	3.34898	3.819685	4.29039	1.58614e-5	2.19386e-7	8.25219e-4	1.7286e-5
chr10	87233131	87233230	6193405	0	-	0.474747	(0.459,0.49]	chr10	554155	194	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	2	14	2	3.77994	3.819655	3.85937	2.14818e-4	1.54766e-4	0.00789628	0.00599593
chr8	90637862	90637961	5213927	0	-	0.474747	(0.459,0.49]	chr8	466643	58	INTRON	INTRON	TMEM64	ENSG00000180694.14	ENST00000418210.2:ENST00000458549.7:ENST00000422900.1:ENST00000519519.5:ENST00000521852.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.77994	3.819655	3.85937	2.14818e-4	1.54766e-4	0.00789628	0.00599593
chr5	64895456	64895555	3191201	0	+	0.383838	(0.36,0.392]	chr5	294407	16	UTR3	UTR3:EXON_MRNA:INTRON	CWC27	ENSG00000153015.17	ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1:ENST00000687101.1:ENST00000545000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	61	2	3.44371	3.8159599999999996	4.18821	1.38906e-10	1e-12	1.85094e-8	1.72912e-10
chr9	78329360	78329452	5409214	0	+	0.391304	(0.36,0.392]	chr9	483127	4	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	2.97461	3.81567	4.65673	0.00698532	7.48315e-4	0.123839	0.0220209
chr2	242030494	242030594	1367613	0	+	0.51	(0.49,0.526]	chr2	141441	246	INTRON	INTRON	LINC01237	ENSG00000233806.8	ENST00000415434.5	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	2.51463	3.81538	5.11613	0.0130492	1.03252e-5	0.198111	5.57702e-4
chr1	243287795	243287895	482937	0	+	0.4	(0.392,0.424]	chr1	51135	10	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000482234.1:ENST00000476722.6:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	3.12871	3.81526	4.50181	6.81583e-5	8.22103e-9	0.00297642	8.47625e-7
chr11	113838110	113838210	6745220	0	-	0.52	(0.49,0.526]	chr11	615588	24	INTRON	INTRON	USP28	ENSG00000048028.11	ENST00000003302.8:ENST00000545540.5:ENST00000540438.5:ENST00000537706.5:ENST00000537642.1:ENST00000542033.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr11	123158027	123158127	6768777	0	-	0.5	(0.49,0.526]	chr11	617747	597	INTRON	INTRON	CLMP	ENSG00000166250.12	ENST00000448775.4	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr12	76083132	76083232	7212759	0	-	0.51	(0.49,0.526]	chr12	665419	85	INTRON	INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr12	109952203	109952300	7275801	0	-	0.515464	(0.49,0.526]	chr12	670455	5	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000549999.1:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr13	30205978	30206076	7476757	0	-	0.510204	(0.49,0.526]	chr13	688835	35	UTR3	UTR3:EXON_MRNA	KATNAL1	ENSG00000102781.14	ENST00000380615.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr17	36497669	36497765	8915849	0	-	0.520833	(0.49,0.526]	chr17	854748	9	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620567.1:ENST00000612392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.16684	3.81482	4.4628	0.00470616	7.611e-4	0.0901733	0.0225125
chr9	94852364	94852464	5436211	0	+	0.5	(0.49,0.526]	chr9	485238	510	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.16666	3.81473	4.4628	7.611e-4	4.28046e-4	0.0225125	0.0141511
chr1	150496554	150496628	295073	0	+	0.581081	(0.57,0.629]	chr1	31183	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TARS2	ENSG00000143374.18	ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000480070.5:ENST00000463555.1:ENST00000460794.1:ENST00000462578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	42	2	3.32362	3.81432	4.30502	1.95019e-8	4.90473e-10	1.90977e-6	5.99948e-8
chr10	100254809	100254904	6235841	0	-	0.431579	(0.424,0.459]	chr10	557745	3	INTRON	INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000466955.5:ENST00000496796.5:ENST00000473842.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	15	2	3.16328	3.8142199999999997	4.46516	0.0011776	2.35249e-6	0.0313499	1.51159e-4
chr2	182290908	182291008	1635130	0	-	0.39	(0.36,0.392]	chr2	168577	261	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	3.54131	3.81388	4.08645	3.17078e-4	1.23682e-4	0.0111061	0.0049353
chr6	129688253	129688353	4194353	0	-	0.38	(0.36,0.392]	chr6	381547	459	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	3.45885	3.812735	4.16662	4.24507e-4	9.16296e-5	0.0140677	0.00387303
chr1	246733880	246733979	488611	0	+	0.424242	(0.392,0.424]	chr1	51488	65	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr12	92823977	92824076	7234914	0	-	0.393939	(0.392,0.424]	chr12	667096	30	INTRON	INTRON	EEA1	ENSG00000102189.17	ENST00000322349.13:ENST00000418984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr14	52929616	52929716	7831977	0	-	0.41	(0.392,0.424]	chr14	721392	13	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr3	3716654	3716754	2152745	0	-	0.41	(0.392,0.424]	chr3	211260	138	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000470751.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr3	136883788	136883888	2012883	0	+	0.4	(0.392,0.424]	chr3	202168	159	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr5	61393518	61393618	3182002	0	+	0.41	(0.392,0.424]	chr5	293789	602	INTRON	INTRON	ZSWIM6	ENSG00000130449.6	ENST00000252744.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr5	109820280	109820342	3273588	0	+	0.419355	(0.392,0.424]	chr5	301389	2	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr7	139272321	139272380	4567071	0	+	0.423729	(0.392,0.424]	chr7	410356	1	CDS	CDS:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8:ENST00000483726.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr9	79572327	79572419	5409228	0	+	0.413043	(0.392,0.424]	chr9	483128	7	UTR5	UTR5:EXON_MRNA	TLE4	ENSG00000106829.20	ENST00000376544.7:ENST00000461758.6:ENST00000376552.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chrX	1404781	1404880	10068322	0	+	0.424242	(0.392,0.424]	chrX	1004813	8	INTRON	INTRON	ASMTL-AS1	ENSG00000236017.8	ENST00000425740.7:ENST00000420411.7:ENST00000419737.7:ENST00000602357.6	lncRNA	lncRNA	lncRNA	lncRNA	1	7	2	3.47186	3.812125	4.15239	0.00572894	0.00366403	0.105396	0.0766409
chr1	28378721	28378821	88408	0	+	0.34	(0.32,0.36]	chr1	9633	85	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	19	2	3.79523	3.8109650000000004	3.8267	4.52264e-6	1.7206e-6	2.71924e-4	1.14305e-4
chr6	7582739	7582837	3702996	0	+	0.540816	(0.526,0.57]	chr6	337021	2	CDS	CDS:EXON_MRNA	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8	protein_coding	protein_coding	protein_coding	protein_coding	36	172	2	3.51142	3.81011	4.1088	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	55641183	55641283	9388926	0	+	0.78	(0.629,1]	chr19	916353	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF580:ZNF581:CCDC106	ENSG00000213015.9:ENSG00000171425.10:ENSG00000173581.8	ENST00000592881.1:ENST00000587252.5:ENST00000590190.1:ENST00000325333.10:ENST00000585995.1:ENST00000592996.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.53295	3.8097649999999996	5.08658	0.00110765	5.52146e-6	0.0305163	3.23814e-4
chr20	2470687	2470690	9693746	0	-	0.333333	(0.32,0.36]	chr20	958815	1	CDS_START	CDS_START:CDS:EXON_MRNA	SNRPB	ENSG00000125835.20	ENST00000438552.6:ENST00000381342.7:ENST00000688775.1:ENST00000689440.1:ENST00000474384.2:ENST00000693393.1:ENST00000688423.1:ENST00000690623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.59803	3.80964	4.02125	0.00267453	3.53532e-4	0.0637459	0.0122629
chr8	130098926	130099026	5274567	0	-	0.34	(0.32,0.36]	chr8	471337	64	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000524124.5:ENST00000357668.2:ENST00000521075.5:ENST00000519483.5:ENST00000520189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.70951	3.809265	3.90902	0.00201951	5.03152e-4	0.0510613	0.0161742
chr1	185307059	185307139	823867	0	-	0.4125	(0.392,0.424]	chr1	91417	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5:ENST00000422754.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	123	2	3.80202	3.809075	3.81613	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	180293418	180293518	3407956	0	+	0.56	(0.526,0.57]	chr5	313199	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000248367	ENSG00000248367.2	ENST00000691211.1:ENST00000689182.1:ENST00000504573.2	lncRNA	lncRNA	lncRNA	lncRNA	3	15	2	2.52322	3.808935	5.09465	0.00370126	1.16684e-5	0.0806443	6.16746e-4
chr17	19323233	19323333	8670659	0	+	0.54	(0.526,0.57]	chr17	820395	96	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000395626.5:ENST00000571254.1:ENST00000572627.6:ENST00000585097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	3.49796	3.808715	4.11947	1.32043e-6	4.7259e-8	8.99853e-5	4.23605e-6
chr11	71877809	71877909	6635528	0	-	0.33	(0.32,0.36]	chr11	607951	116	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	3.6551	3.8086349999999998	3.96217	2.11023e-4	3.46128e-7	0.00785	2.6576e-5
chr14	58278418	58278518	7840238	0	-	0.41	(0.392,0.424]	chr14	722085	39	INTRON	INTRON	ARMH4:PSMA3-AS1	ENSG00000139971.15:ENSG00000257621.9	ENST00000554218.1:ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr15	44351515	44351615	7961234	0	+	0.41	(0.392,0.424]	chr15	736602	27	INTRON	INTRON	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr16	56770107	56770206	8396997	0	+	0.424242	(0.392,0.424]	chr16	784781	111	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr17	66398437	66398537	8779870	0	+	0.41	(0.392,0.424]	chr17	835622	585	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr3	135985897	135985996	2009741	0	+	0.414141	(0.392,0.424]	chr3	201927	197	INTRON	INTRON	PPP2R3A	ENSG00000073711.11	ENST00000264977.8:ENST00000490467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr4	109817156	109817249	2709862	0	+	0.419355	(0.392,0.424]	chr4	257873	4	INTRON	INTRON	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7:ENST00000503671.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.39796	3.807685	4.21741	0.00496616	0.00439831	0.0964485	0.0875511
chr8	73746482	73746582	5195254	0	-	0.69	(0.629,1]	chr8	465470	3	SS5_PROX	SS5_PROX:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000519818.5:ENST00000522061.5:ENST00000523160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	3.32274	3.806565	4.29039	7.60906e-4	2.19386e-7	0.0223166	1.7286e-5
chr1	45339738	45339815	597987	0	-	0.558442	(0.526,0.57]	chr1	67142	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MUTYH	ENSG00000132781.20	ENST00000529984.5:ENST00000372115.7:ENST00000672818.3:ENST00000372110.7:ENST00000481571.5:ENST00000372098.7:ENST00000355498.6:ENST00000354383.10:ENST00000475516.5:ENST00000456914.7:ENST00000372104.5:ENST00000448481.5:ENST00000488731.6:ENST00000531105.5:ENST00000672011.1:ENST00000528013.6:ENST00000673134.1:ENST00000672593.1:ENST00000672764.1:ENST00000412971.5:ENST00000470256.5:ENST00000461495.6:ENST00000435155.1:ENST00000450313.6:ENST00000467940.5:ENST00000525160.5:ENST00000479746.6:ENST00000492494.5:ENST00000671856.1:ENST00000483642.5:ENST00000481139.5:ENST00000485484.5:ENST00000476789.5:ENST00000462387.5:ENST00000474703.1:ENST00000483127.1:ENST00000534453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.22891	3.80566	4.38241	0.00393565	0.00101891	0.0798064	0.0276375
chr8	94901322	94901422	5025895	0	+	0.54	(0.526,0.57]	chr8	451360	50	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.22891	3.80566	4.38241	0.00393565	0.00101891	0.0798064	0.0276375
chr6	56614355	56614419	4092004	0	-	0.40625	(0.392,0.424]	chr6	372948	1	CDS	CDS:EXON_MRNA	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5	protein_coding	protein_coding	protein_coding	protein_coding	41	125	2	3.61946	3.805655	3.99185	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	131493179	131493279	2437029	0	-	0.46	(0.459,0.49]	chr3	233782	27	INTRON	INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5:ENST00000512877.1:ENST00000506946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	3.64423	3.805545	3.96686	6.20842e-4	5.54129e-5	0.0191195	0.00252909
chr11	110254027	110254109	6740063	0	-	0.390244	(0.36,0.392]	chr11	614676	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000529774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	114	2	3.78733	3.80546	3.82359	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	100027846	100027946	1937065	0	+	0.46	(0.459,0.49]	chr3	195327	19	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	3.63487	3.80544	3.97601	1.69661e-5	7.08572e-7	8.71289e-4	5.07254e-5
chr10	35469433	35469532	5837163	0	+	0.474747	(0.459,0.49]	chr10	524519	136	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	3.56135	3.803955	4.04656	3.80472e-5	1.37546e-6	0.00181622	9.34366e-5
chr5	132952491	132952591	3600175	0	-	0.45	(0.424,0.459]	chr5	327051	149	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	31	2	3.68817	3.8034749999999997	3.91878	5.64013e-8	4.49034e-9	5.08613e-6	4.82613e-7
chr5	64896049	64896148	3191207	0	+	0.313131	[0,0.32]	chr5	294407	22	UTR3	UTR3:EXON_MRNA:INTRON	CWC27	ENSG00000153015.17	ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1:ENST00000687101.1:ENST00000545000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	16	2	3.61847	3.803315	3.98816	2.40709e-4	6.69422e-7	0.00878409	4.83422e-5
chr10	27035082	27035177	6086683	0	-	0.357895	(0.32,0.36]	chr10	545590	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANKRD26	ENSG00000107890.17	ENST00000376087.5:ENST00000675116.1:ENST00000436985.7:ENST00000675349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	47	2	3.66398	3.80305	3.94212	4.40522e-9	1e-12	4.7358e-7	1.72912e-10
chr12	4274140	4274235	6807255	0	+	0.578947	(0.57,0.629]	chr12	621125	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	3.68887	3.8022	3.91553	0.00651627	1.98886e-4	0.114061	0.00746609
chr22	32478034	32478115	9935875	0	+	0.45679	(0.424,0.459]	chr22	987180	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1:ENST00000465418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	46	2	2.87555	3.802015	4.72848	5.29748e-9	1e-12	5.62807e-7	1.72912e-10
chr1	88755237	88755337	227283	0	+	0.36	(0.32,0.36]	chr1	22785	136	INTRON	INTRON	PKN2	ENSG00000065243.20	ENST00000316005.11:ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	3.43922	3.801965	4.16471	1.15221e-4	9.22891e-5	0.00464739	0.00388567
chr4	182173138	182173238	2795808	0	+	0.39	(0.36,0.392]	chr4	264794	280	INTRON	INTRON	TENM3	ENSG00000218336.9	ENST00000513201.1:ENST00000512480.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	25	2	3.48357	3.8005199999999997	4.11747	6.69835e-7	2.49186e-8	4.83503e-5	2.3576e-6
chr11	57309868	57309966	6607082	0	-	0.602041	(0.57,0.629]	chr11	601801	16	CDS	CDS:UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000530920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	53	272	2	3.2906	3.80018	4.30976	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	8738555	8738655	511001	0	-	0.54	(0.526,0.57]	chr1	54933	355	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr1	156489911	156490011	781810	0	-	0.55	(0.526,0.57]	chr1	86779	61	INTRON	INTRON	MEF2D	ENSG00000116604.19	ENST00000348159.9:ENST00000360595.7:ENST00000475587.2:ENST00000489057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr1	179216946	179217046	813336	0	-	0.53	(0.526,0.57]	chr1	90525	740	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr15	85475876	85475976	8070901	0	+	0.53	(0.526,0.57]	chr15	746002	604	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr17	82530190	82530290	8823458	0	+	0.57	(0.526,0.57]	chr17	841827	95	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr3	128359072	128359172	1985796	0	+	0.53	(0.526,0.57]	chr3	199773	3	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.15803	3.7998600000000002	4.44169	0.00482649	8.21639e-4	0.0920354	0.0238903
chr16	22287058	22287157	8348834	0	+	0.545455	(0.526,0.57]	chr16	778330	32	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000561791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	3.1573	3.7994950000000003	4.44169	8.21639e-4	4.45312e-4	0.0238903	0.0146627
chrX	153710847	153710947	10460848	0	-	0.56	(0.526,0.57]	chrX	1036574	55	INTRON	INTRON	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.1573	3.7994950000000003	4.44169	8.21639e-4	4.45312e-4	0.0238903	0.0146627
chr7	75206171	75206260	4733416	0	-	0.393258	(0.392,0.424]	chr7	424888	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000622399.4:ENST00000619312.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	21	2	2.97135	3.799405	4.62746	0.00130048	6.31928e-10	0.0347373	7.66375e-8
chr12	28416431	28416531	6858951	0	+	0.48	(0.459,0.49]	chr12	626451	31	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.39129	3.7988150000000003	4.20634	0.00276656	0.00244536	0.0641652	0.0587626
chr14	71393594	71393694	7686249	0	+	0.48	(0.459,0.49]	chr14	706532	136	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr16	67079707	67079782	8407618	0	+	0.48	(0.459,0.49]	chr16	786809	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr18	74667704	74667804	9149466	0	+	0.46	(0.459,0.49]	chr18	882036	262	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr4	7876978	7877078	2832360	0	-	0.47	(0.459,0.49]	chr4	268413	45	INTRON	INTRON	AFAP1	ENSG00000196526.11	ENST00000420658.6:ENST00000358461.6	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr8	118051815	118051915	5258575	0	-	0.48	(0.459,0.49]	chr8	469756	347	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr9	35232805	35232904	5372363	0	+	0.484848	(0.459,0.49]	chr9	479722	12	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1:ENST00000485086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.08436	3.798455	4.51255	0.00939464	6.3564e-4	0.161654	0.0193151
chr13	100536371	100536471	7560923	0	-	0.3	[0,0.32]	chr13	695360	22	INTRON	INTRON	GGACT	ENSG00000134864.11	ENST00000683975.1:ENST00000376250.6:ENST00000492399.5:ENST00000471912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.27638	3.7975700000000003	4.31876	0.0118823	5.15904e-5	0.184357	0.00235512
chr18	3275167	3275266	9041535	0	+	0.373737	(0.36,0.392]	chr18	874449	17	INTRON	INTRON	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	3.4283	3.79746	4.16662	9.16296e-5	5.8205e-5	0.00387303	0.0026464
chr14	21219878	21219978	7772895	0	-	0.42	(0.392,0.424]	chr14	714934	64	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	19	2	3.69229	3.797035	3.90178	7.45573e-6	3.72291e-6	4.27499e-4	2.27625e-4
chr20	8203079	8203179	9564350	0	+	0.48	(0.459,0.49]	chr20	947073	523	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	3.32099	3.7969150000000003	4.27284	0.00227779	2.2051e-4	0.0552099	0.00809052
chr20	46074712	46074811	9750843	0	-	0.444444	(0.424,0.459]	chr20	966277	38	INTRON	INTRON	NCOA5	ENSG00000124160.12	ENST00000290231.11:ENST00000372291.3	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.70259	3.796585	4.89058	0.00129645	8.77883e-9	0.0346786	9.05568e-7
chr10	27035177	27035273	6086684	0	-	0.364583	(0.36,0.392]	chr10	545590	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANKRD26	ENSG00000107890.17	ENST00000376087.5:ENST00000675116.1:ENST00000436985.7:ENST00000675349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	24	2	3.17868	3.79616	4.41364	1.02243e-4	2.01138e-10	0.00424251	2.60682e-8
chr1	151219080	151219179	297352	0	+	0.50505	(0.49,0.526]	chr1	31739	27	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chr10	35469732	35469832	5837166	0	+	0.52	(0.49,0.526]	chr10	524519	139	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chr14	59446884	59446984	7840824	0	-	0.52	(0.49,0.526]	chr14	722159	174	INTRON	INTRON	GPR135	ENSG00000181619.12	ENST00000481661.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chr17	73014894	73014994	9006644	0	-	0.52	(0.49,0.526]	chr17	868505	221	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5:ENST00000582179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chr6	31735661	31735761	4035719	0	-	0.52	(0.49,0.526]	chr6	366122	10	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chrX	37387487	37387587	10110208	0	+	0.52	(0.49,0.526]	chrX	1007942	4	INTRON	INTRON	PRRG1	ENSG00000130962.18	ENST00000491253.1:ENST00000542554.5:ENST00000543642.5:ENST00000466533.5:ENST00000378628.9:ENST00000484460.5:ENST00000449135.6:ENST00000463135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.50606	3.795495	4.08493	0.00395081	0.0010102	0.0816719	0.0282228
chr9	41141845	41141945	5619346	0	-	0.39	(0.36,0.392]	chr9	503832	2	SS5_PROX	SS5_PROX:INTRON	CBWD6	ENSG00000215126.11	ENST00000613716.4:ENST00000377391.8:ENST00000456520.5:ENST00000382436.7:ENST00000494538.6:ENST00000611553.4:ENST00000617917.4:ENST00000613125.4:ENST00000610358.4:ENST00000486387.6:ENST00000617722.4:ENST00000457288.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.28561	3.79446	4.30331	0.0015215	2.34074e-5	0.0397018	0.00116109
chr1	145778640	145778740	748438	0	-	0.46	(0.459,0.49]	chr1	80175	49	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chr12	46525801	46525901	6894242	0	+	0.46	(0.459,0.49]	chr12	628512	307	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chr14	73858330	73858427	7699688	0	+	0.484536	(0.459,0.49]	chr14	707538	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PTGR2	ENSG00000140043.12	ENST00000555661.6:ENST00000555228.5:ENST00000555976.5:ENST00000553326.5:ENST00000267568.8:ENST00000556219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chr7	32631547	32631646	4683376	0	-	0.484848	(0.459,0.49]	chr7	419920	78	INTRON	INTRON	DPY19L1P1	ENSG00000229358.3	ENST00000417811.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chr7	66749789	66749889	4402533	0	+	0.47	(0.459,0.49]	chr7	396647	86	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chrX	16601349	16601449	10283676	0	-	0.48	(0.459,0.49]	chrX	1022859	101	INTRON	INTRON	CTPS2	ENSG00000047230.15	ENST00000359276.9:ENST00000443824.5:ENST00000380241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.00648	3.79312	4.57976	0.0112903	4.98571e-4	0.181488	0.0160179
chrX	57119348	57119431	10354047	0	-	0.457831	(0.424,0.459]	chrX	1028506	2	INTRON	INTRON	SPIN2B	ENSG00000186787.10	ENST00000460948.1	protein_coding	protein_coding	protein_coding	protein_coding	5	14	2	2.2141	3.792825	5.37155	0.00829078	2.42251e-6	0.145308	1.53938e-4
chr1	156879281	156879362	311146	0	+	0.506173	(0.49,0.526]	chr1	34542	3	CDS	CDS:UTR3:EXON_MRNA	NTRK1	ENSG00000198400.13	ENST00000392302.7:ENST00000674537.1:ENST00000497019.7:ENST00000530298.5:ENST00000368196.7:ENST00000524377.7:ENST00000358660.3:ENST00000531606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	3.45225	3.7921300000000002	4.13201	8.48086e-6	1.94111e-7	4.76746e-4	1.56274e-5
chr15	61937050	61937150	8205860	0	-	0.4	(0.392,0.424]	chr15	760566	3	SS3_PROX	SS3_PROX:INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000650094.1:ENST00000645819.1:ENST00000395898.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	13	2	3.54722	3.7921249999999995	4.03703	1.52245e-4	1.48653e-4	0.0058275	0.00578975
chr4	129012455	129012555	3012320	0	-	0.39	(0.36,0.392]	chr4	281997	82	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	25	2	3.61757	3.7908749999999998	3.96418	3.41715e-7	6.15221e-8	2.60631e-5	5.48981e-6
chr3	191381612	191381703	2144224	0	+	0.373626	(0.36,0.392]	chr3	210027	3	INTRON	INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	3.49505	3.79075	4.08645	1.23682e-4	5.09823e-6	0.0049353	3.04992e-4
chr22	28557359	28557459	10006877	0	-	0.39	(0.36,0.392]	chr22	996542	1144	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	35	97	2	3.35505	3.7906750000000002	4.2263	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	39351776	39351844	7141672	0	-	0.264706	[0,0.32]	chr12	655897	1	CDS	CDS:EXON_MRNA	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	16	42	2	3.63658	3.7905100000000003	3.94444	1.26875e-9	1e-12	1.47109e-7	1.72912e-10
chr7	55160138	55160238	4391303	0	+	0.44	(0.424,0.459]	chr7	395495	1	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7	protein_coding	protein_coding	protein_coding	protein_coding	100	335	2	3.63904	3.788705	3.93837	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	70197309	70197409	5395914	0	+	0.38	(0.36,0.392]	chr9	481902	263	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	14	41	2	3.75174	3.78862	3.8255	1.02898e-10	4.01779e-12	1.38599e-8	6.47087e-10
chr5	119117525	119117624	3290412	0	+	0.525253	(0.49,0.526]	chr5	302402	8	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.41836	3.78775	4.15714	0.00319561	0.00136895	0.0699484	0.0359623
chr5	148435850	148435949	3351126	0	+	0.515152	(0.49,0.526]	chr5	307837	9	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000340253.10:ENST00000394370.7:ENST00000513826.1:ENST00000505399.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.41836	3.78775	4.15714	0.00319561	0.00136895	0.0699484	0.0359623
chr19	15332374	15332459	9449084	0	-	0.847059	(0.629,1]	chr19	928370	2	UTR5	UTR5:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000597315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	3.23526	3.7871249999999996	4.33899	0.00139352	8.51164e-4	0.037038	0.0245129
chr15	56118335	56118435	8182768	0	-	0.41	(0.392,0.424]	chr15	759035	143	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	2.71627	3.7864050000000002	4.85654	0.00513884	1.84333e-4	0.0992178	0.00688171
chr3	60129936	60130036	2302580	0	-	0.41	(0.392,0.424]	chr3	225034	492	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.71627	3.7864050000000002	4.85654	0.00513884	1.84333e-4	0.0992178	0.00688171
chr3	152361302	152361402	2044424	0	+	0.42	(0.392,0.424]	chr3	204355	257	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.71627	3.7864050000000002	4.85654	0.00513884	1.84333e-4	0.0992178	0.00688171
chr21	34087390	34087490	9808135	0	+	0.39	(0.36,0.392]	chr21	972067	133	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	3.54131	3.78609	4.03087	3.17078e-4	3.77193e-6	0.0111061	2.29843e-4
chr11	93177004	93177104	6708311	0	-	0.43	(0.424,0.459]	chr11	612821	64	INTRON	INTRON	SLC36A4	ENSG00000180773.15	ENST00000326402.9:ENST00000529184.5:ENST00000534116.1:ENST00000524875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	127	2	3.68066	3.7854799999999997	3.8903	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	22503657	22503756	8349532	0	+	0.444444	(0.424,0.459]	chr16	778519	115	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	3.1045	3.78149	4.45848	4.34131e-5	5.48586e-9	0.00200039	5.79354e-7
chr3	161429408	161429502	2481322	0	-	0.585106	(0.57,0.629]	chr3	238030	4	EXON_PSEUDO	EXON_PSEUDO	RPL23AP42	ENSG00000234851.4	ENST00000471152.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	228	1209	2	3.65362	3.7812	3.90878	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	141521222	141521322	2033533	0	+	0.41	(0.392,0.424]	chr3	203163	44	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000515549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	19	2	3.74846	3.7807250000000003	3.81299	2.36886e-5	1.33045e-6	0.00119556	9.05848e-5
chr1	16285821	16285921	523547	0	-	0.42	(0.392,0.424]	chr1	56719	287	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.63838	3.7807000000000004	4.92302	0.00636373	1.45314e-4	0.114061	0.00569484
chr22	36771719	36771816	10031115	0	-	0.412371	(0.392,0.424]	chr22	999416	33	INTRON	INTRON	IFT27	ENSG00000100360.15	ENST00000340630.9:ENST00000471809.5:ENST00000433985.7:ENST00000417951.6:ENST00000430701.5:ENST00000465023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.40795	3.78017	4.15239	0.00572894	5.07532e-4	0.105396	0.0162102
chr4	127936912	127937010	3010308	0	-	0.397959	(0.392,0.424]	chr4	281778	24	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000641869.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000642012.1:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641830.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.40795	3.78017	4.15239	0.00572894	5.07532e-4	0.105396	0.0162102
chr9	68798760	68798860	5389503	0	+	0.4	(0.392,0.424]	chr9	481448	127	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000377284.5:ENST00000437200.5:ENST00000478500.3:ENST00000440050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.40795	3.78017	4.15239	0.00572894	5.07532e-4	0.105396	0.0162102
chrX	41573043	41573143	10326766	0	-	0.4	(0.392,0.424]	chrX	1025439	29	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645937.2:ENST00000378179.9:ENST00000646087.2:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000472704.3:ENST00000643043.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	9	2	3.40795	3.78017	4.15239	0.00572894	5.07532e-4	0.105396	0.0162102
chr14	55338724	55338823	7627353	0	+	0.535354	(0.526,0.57]	chr14	701836	54	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.48083	3.77925	4.07767	0.00403601	0.00110295	0.0817225	0.0304129
chr19	52734000	52734100	9533899	0	-	0.57	(0.526,0.57]	chr19	942609	36	INTRON	INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5:ENST00000601447.5:ENST00000597566.5:ENST00000599798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.48083	3.77925	4.07767	0.00403601	0.00110295	0.0817225	0.0304129
chr2	46971487	46971586	1020354	0	+	0.555556	(0.526,0.57]	chr2	109923	126	INTRON	INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	10	2	3.48083	3.77925	4.07767	0.00403601	0.00110295	0.0817225	0.0304129
chr3	63863003	63863103	2314118	0	-	0.53	(0.526,0.57]	chr3	225135	1	SS5_PROX	SS5_PROX:INTRON	THOC7	ENSG00000163634.12	ENST00000295899.10:ENST00000469584.5:ENST00000498422.5:ENST00000464327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	3.48083	3.77925	4.07767	0.00403601	0.00110295	0.0817225	0.0304129
chr17	43264456	43264556	8938106	0	-	0.61	(0.57,0.629]	chr17	859071	343	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	21	116	2	3.62926	3.7786299999999997	3.928	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	56313674	56313771	7176916	0	-	0.608247	(0.57,0.629]	chr12	661782	4	INTRON	INTRON	CNPY2	ENSG00000257727.6	ENST00000273308.9:ENST00000553191.1:ENST00000551475.5:ENST00000551286.1:ENST00000551720.5:ENST00000551276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	3.42043	3.7779049999999996	4.13538	9.02612e-4	5.27543e-6	0.0258498	3.12112e-4
chr15	101222603	101222703	8291533	0	-	0.48	(0.459,0.49]	chr15	769715	332	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	3.27506	3.7779	4.28074	3.71826e-5	3.57604e-6	0.00178235	2.18487e-4
chr1	154236852	154236923	303451	0	+	0.394366	(0.392,0.424]	chr1	32635	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	3.37639	3.7775049999999997	4.17862	7.3655e-5	4.01331e-5	0.00317841	0.00187621
chr3	50675178	50675263	1871560	0	+	0.894118	(0.629,1]	chr3	190418	4	UTR5	UTR5:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.15981	3.777125	4.39444	0.00188809	6.41849e-4	0.0466341	0.0196462
chr8	93736213	93736310	5219310	0	-	0.402062	(0.392,0.424]	chr8	466967	29	CDS	CDS:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	80	2	3.69642	3.777095	3.85777	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	91387328	91387427	687205	0	-	0.525253	(0.49,0.526]	chr1	74744	11	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	327	1442	2	3.7045	3.7759549999999997	3.84741	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	122238868	122238968	6764609	0	-	0.41	(0.392,0.424]	chr11	617603	41	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1:ENST00000528381.1	lncRNA	lncRNA	lncRNA	lncRNA	12	27	2	2.73412	3.77585	4.81758	1.06667e-6	6.29448e-8	7.44399e-5	5.585e-6
chr1	173985812	173985911	807383	0	-	0.323232	(0.32,0.36]	chr1	89984	8	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	3.67717	3.77488	3.87259	3.96495e-5	8.39038e-6	0.00188516	4.72997e-4
chr9	6830850	6830950	5331050	0	+	0.4	(0.392,0.424]	chr9	477152	119	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.3308	3.774105	4.21741	0.00496616	6.63878e-4	0.0964485	0.0199616
chr12	88517546	88517639	7229153	0	-	0.365591	(0.36,0.392]	chr12	666564	7	INTRON	INTRON	KITLG	ENSG00000049130.16	ENST00000347404.10:ENST00000644744.1:ENST00000378535.4:ENST00000646633.1:ENST00000357116.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.28561	3.77312	4.26063	0.00451705	0.0015215	0.0875511	0.0397018
chr1	176057301	176057401	809387	0	-	0.57	(0.526,0.57]	chr1	90106	106	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	3.40949	3.772875	4.13626	0.00339748	0.00141136	0.0728314	0.0368074
chrX	9620494	9620594	10078971	0	+	0.48	(0.459,0.49]	chrX	1005254	596	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	104	2	3.76285	3.77273	3.78261	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	129554047	129554146	10222423	0	+	0.454545	(0.424,0.459]	chrX	1017784	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	OCRL	ENSG00000122126.18	ENST00000486673.1:ENST00000371113.9:ENST00000357121.5:ENST00000691455.1:ENST00000693473.1:ENST00000646010.1:ENST00000689093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	19	2	2.89055	3.77203	4.65351	3.60142e-4	1.8873e-7	0.01248	1.54537e-5
chr12	46641192	46641292	6895398	0	+	0.29	[0,0.32]	chr12	628522	694	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	3	12	2	3.35176	3.7717349999999996	4.19171	0.0102933	1.59164e-6	0.170122	1.07558e-4
chr14	71571191	71571291	7688036	0	+	0.37	(0.36,0.392]	chr14	706586	415	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5:ENST00000557712.1:ENST00000555818.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	17	2	3.51234	3.771605	4.03087	3.96166e-5	3.77193e-6	0.00188516	2.29843e-4
chr11	43718740	43718840	6380782	0	+	0.55	(0.526,0.57]	chr11	571581	370	INTRON	INTRON	HSD17B12	ENSG00000149084.13	ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	115	2	3.43331	3.7714049999999997	4.1095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	50356943	50357043	7975082	0	+	0.41	(0.392,0.424]	chr15	737694	21	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000659570.2:ENST00000670332.1:ENST00000667317.2:ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	29	87	2	3.52512	3.77102	4.01692	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	42863139	42863239	9885229	0	-	0.61	(0.57,0.629]	chr21	980564	3	SS5_PROX	SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5:ENST00000470658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	3.71277	3.7700199999999997	3.82727	2.54625e-6	4.83426e-7	1.59749e-4	3.58265e-5
chr2	48462890	48462987	1026146	0	+	0.525773	(0.49,0.526]	chr2	110374	13	INTRON	INTRON	PPP1R21	ENSG00000162869.16	ENST00000431614.5:ENST00000294952.13:ENST00000449090.6:ENST00000281394.8:ENST00000416913.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	3.63247	3.7698850000000004	3.9073	3.91053e-4	7.31994e-5	0.0131535	0.00316256
chr12	123512757	123512857	7314353	0	-	0.49	(0.459,0.49]	chr12	675726	129	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.55849	3.76915	4.97981	0.00493064	3.36273e-5	0.0964485	0.00159406
chr9	4576544	4576644	5543768	0	-	0.45	(0.424,0.459]	chr9	498995	218	INTRON	INTRON	SPATA6L	ENSG00000106686.17	ENST00000485616.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	12	2	3.23804	3.768465	4.29889	0.00649971	1.12945e-5	0.114061	6.02727e-4
chr9	137543501	137543572	5772010	0	-	0.661972	(0.629,1]	chr9	519696	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PNPLA7	ENSG00000130653.16	ENST00000406427.6:ENST00000277531.8:ENST00000434090.2:ENST00000491019.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	3.43995	3.767995	4.09604	6.49948e-6	1.74665e-9	3.75413e-4	2.00018e-7
chr6	1641683	1641782	3984978	0	-	0.434343	(0.424,0.459]	chr6	361386	156	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	3.3314	3.767505	4.20361	0.00517898	1.79381e-5	0.0992178	9.13813e-4
chr1	236802128	236802228	463324	0	+	0.38	(0.36,0.392]	chr1	49987	60	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000652435.1:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.20352	3.76736	4.3312	0.00387074	0.0019364	0.078873	0.0476694
chr10	68332216	68332235	5871245	0	+	0.421053	(0.392,0.424]	chr10	526729	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	2.71627	3.7669250000000005	4.81758	0.00513884	6.29448e-8	0.0992178	5.585e-6
chr18	23980282	23980382	9193248	0	-	0.48	(0.459,0.49]	chr18	885999	111	INTRON	INTRON	ENSG00000265752	ENSG00000265752.3	ENST00000582300.2:ENST00000664669.1	lncRNA	lncRNA	lncRNA	lncRNA	3	17	2	3.32099	3.766605	4.21222	2.2051e-4	9.25181e-6	0.00809052	5.14007e-4
chr12	46359258	46359356	7152979	0	-	0.418367	(0.392,0.424]	chr12	656680	12	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	3.54297	3.76444	3.98591	1.67511e-5	6.6292e-8	8.60936e-4	5.85414e-6
chr12	111570494	111570594	7280619	0	-	0.41	(0.392,0.424]	chr12	671163	142	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	3.37639	3.7643899999999997	4.15239	0.00572894	7.3655e-5	0.105396	0.00317841
chr15	34362472	34362572	8125762	0	-	0.58	(0.57,0.629]	chr15	751694	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LPCAT4	ENSG00000176454.15	ENST00000314891.11:ENST00000563748.5:ENST00000567507.1:ENST00000563240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	2.14758	3.76417	5.38076	0.0066476	5.85803e-7	0.116278	4.27724e-5
chr1	103559673	103559773	248518	0	+	0.32	[0,0.32]	chr1	25113	42	INTRON	INTRON	AMY2B	ENSG00000240038.7	ENST00000477657.5:ENST00000361355.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	7	2	3.12911	3.763465	4.39782	0.00484145	0.00334699	0.0964485	0.0734189
chr7	47333767	47333867	4713432	0	-	0.31	[0,0.32]	chr7	422609	284	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	3.12911	3.763465	4.39782	0.00484145	0.00334699	0.0964485	0.0734189
chr21	39348767	39348862	9882471	0	-	0.852632	(0.629,1]	chr21	980055	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000380747.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5:ENST00000479586.5:ENST00000482733.1:ENST00000463631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	3.39846	3.763445	4.12843	0.00233396	5.39652e-4	0.0563219	0.0171646
chr7	98878489	98878563	4485469	0	+	0.810811	(0.629,1]	chr7	402751	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.84021	3.76292	4.68563	0.00897489	1.13329e-4	0.155806	0.00463413
chr8	19633917	19634017	5132375	0	-	0.52	(0.49,0.526]	chr8	459338	83	INTRON	INTRON	CSGALNACT1	ENSG00000147408.16	ENST00000695898.1:ENST00000695897.1:ENST00000695896.1:ENST00000695895.1:ENST00000692225.2:ENST00000695893.1:ENST00000695894.1:ENST00000695892.1:ENST00000397998.7:ENST00000332246.10:ENST00000695900.1:ENST00000523262.5:ENST00000517494.1:ENST00000524213.5:ENST00000517651.5:ENST00000523227.5:ENST00000522573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	3.25894	3.762625	4.26631	2.88576e-4	2.32598e-6	0.010254	1.50793e-4
chr3	78890000	78890100	2351375	0	-	0.44	(0.424,0.459]	chr3	227137	1427	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.90943	3.76183	4.61423	0.00449434	4.85762e-7	0.0875511	3.605e-5
chr15	87929181	87929281	8266614	0	-	0.5	(0.49,0.526]	chr15	767654	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NTRK3	ENSG00000140538.17	ENST00000394480.6:ENST00000629765.3:ENST00000357724.6:ENST00000626019.2:ENST00000557856.5:ENST00000695462.1:ENST00000558576.5:ENST00000542733.6:ENST00000558676.5	protein_coding	protein_coding	protein_coding	protein_coding	42	190	2	3.66594	3.7615350000000003	3.85713	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	174326492	174326592	351706	0	+	0.36	(0.32,0.36]	chr1	38868	210	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	2.77086	3.761435	4.75201	0.00179457	1.17755e-9	0.0449876	1.3764e-7
chr5	59500877	59500977	3477256	0	-	0.38	(0.36,0.392]	chr5	319250	704	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	56	2	3.35959	3.759765	4.15994	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	210570107	210570207	1296032	0	+	0.37	(0.36,0.392]	chr2	134054	129	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	3.63053	3.759665	3.8888	1.09566e-6	1.9178e-8	7.63801e-5	1.85307e-6
chr19	41886871	41886969	9353494	0	+	0.540816	(0.526,0.57]	chr19	909181	20	INTRON	INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600387.5:ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000596957.1:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	3.32233	3.758825	4.19532	1.36681e-4	5.88525e-6	0.00539233	3.44579e-4
chr19	10499294	10499394	9434633	0	-	0.6	(0.57,0.629]	chr19	925244	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KEAP1	ENSG00000079999.14	ENST00000171111.10:ENST00000393623.6:ENST00000588024.1:ENST00000585845.1:ENST00000592055.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	561	2915	2	3.7479	3.75867	3.76944	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	220270271	220270367	863516	0	-	0.416667	(0.392,0.424]	chr1	95939	22	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9:ENST00000689820.1:ENST00000474178.1:ENST00000692208.1:ENST00000688281.1:ENST00000684982.1:ENST00000475769.1:ENST00000462353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	13	2	3.73536	3.7586500000000003	3.78194	7.47402e-4	3.4035e-5	0.0225125	0.0016098
chr2	235716165	235716264	1348378	0	+	0.575758	(0.57,0.629]	chr2	139213	66	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.94363	3.7586000000000004	4.57357	0.00107587	3.84418e-8	0.0288605	3.50528e-6
chr6	165893224	165893324	4269679	0	-	0.41	(0.392,0.424]	chr6	386913	194	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	62	181	2	3.68715	3.7582649999999997	3.82938	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	240406161	240406261	481865	0	+	0.7	(0.629,1]	chr1	51065	132	INTRON	INTRON	FMN2	ENSG00000155816.21	ENST00000319653.14:ENST00000681210.1:ENST00000681741.1:ENST00000681824.1:ENST00000545751.3:ENST00000679980.1:ENST00000679390.1:ENST00000681131.1:ENST00000681805.1:ENST00000681296.1:ENST00000679646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	3.14522	3.7580750000000003	4.37093	6.21098e-6	6.32275e-8	3.62793e-4	5.60675e-6
chr12	122543299	122543399	7039056	0	+	0.47	(0.459,0.49]	chr12	645214	3	SS3_PROX	SS3_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.00155	3.75705	4.51255	0.00201907	6.3564e-4	0.0510613	0.0193151
chr16	24796622	24796714	8357883	0	+	0.478261	(0.459,0.49]	chr16	779159	3	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000567232.1:ENST00000561726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.00155	3.75705	4.51255	0.00201907	6.3564e-4	0.0510613	0.0193151
chrX	9712742	9712838	10079920	0	+	0.46875	(0.459,0.49]	chrX	1005345	11	EXON_MRNA	EXON_MRNA:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	3.00155	3.75705	4.51255	0.00201907	6.3564e-4	0.0510613	0.0193151
chr19	35499957	35500029	9480861	0	-	0.486111	(0.459,0.49]	chr19	932754	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DMKN	ENSG00000161249.21	ENST00000339686.8:ENST00000462721.5:ENST00000402589.6:ENST00000488542.6:ENST00000434389.5:ENST00000460327.5:ENST00000408915.6:ENST00000490622.5:ENST00000488762.5:ENST00000436012.5:ENST00000467532.5:ENST00000414866.6:ENST00000480502.5:ENST00000469960.5:ENST00000467637.5:ENST00000419602.5:ENST00000429837.5:ENST00000462126.5:ENST00000443640.5:ENST00000597212.5:ENST00000472252.6:ENST00000593342.5:ENST00000601650.1:ENST00000602781.5:ENST00000492341.6:ENST00000460051.5:ENST00000498211.5:ENST00000483855.5:ENST00000493979.5:ENST00000464709.6:ENST00000463292.5:ENST00000465927.5:ENST00000464894.5:ENST00000493517.5:ENST00000466587.6:ENST00000602679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	11	2	2.7486	3.756805	4.76501	0.00700666	1.46149e-4	0.12393	0.00564049
chr7	92703928	92704028	4774585	0	-	0.55	(0.526,0.57]	chr7	427584	320	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	3.393	3.7562349999999998	4.11947	4.3065e-6	4.7259e-8	2.56035e-4	4.23605e-6
chrX	77652265	77652353	10383795	0	-	0.465909	(0.459,0.49]	chrX	1030476	2	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	269	1048	2	3.72261	3.7558249999999997	3.78904	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	28130922	28131017	4958745	0	+	0.494737	(0.49,0.526]	chr8	444339	9	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5:ENST00000520011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.62651	3.754735	4.88296	0.00258005	8.97943e-10	0.0617778	1.06516e-7
chr11	102322826	102322925	6480008	0	+	0.343434	(0.32,0.36]	chr11	585414	11	UTR5	UTR5:EXON_MRNA:INTRON	BIRC3	ENSG00000023445.16	ENST00000615299.4:ENST00000263464.9:ENST00000526421.6:ENST00000527309.2:ENST00000673846.1:ENST00000532808.5	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	3.75234	3.75447	3.7566	2.33916e-7	1.82232e-10	1.88178e-5	2.36584e-8
chr19	50489182	50489282	9378945	0	+	0.61	(0.57,0.629]	chr19	914400	66	UTR3	UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000334976.11	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.28948	3.753845	4.21821	0.00212278	0.00185391	0.0532704	0.0459841
chr10	27063701	27063796	6086984	0	-	0.389474	(0.36,0.392]	chr10	545664	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKRD26	ENSG00000107890.17	ENST00000376087.5:ENST00000436985.7:ENST00000676420.1:ENST00000676232.1:ENST00000675187.1:ENST00000675846.1:ENST00000674697.1:ENST00000676361.1:ENST00000676299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	9	2	2.85081	3.75377	4.65673	0.00352888	7.48315e-4	0.0751127	0.0220209
chr3	50675010	50675094	1871558	0	+	0.797619	(0.629,1]	chr3	190418	2	UTR5	UTR5:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.76554	3.753615	4.74169	0.0112307	7.88558e-5	0.181488	0.00339056
chr11	45212943	45213043	6388429	0	+	0.62	(0.57,0.629]	chr11	572158	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PRDM11	ENSG00000019485.14	ENST00000530656.5:ENST00000683152.1:ENST00000534751.3:ENST00000622142.5:ENST00000424263.6:ENST00000528980.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.03884	3.7535550000000004	4.46827	0.00676458	5.2773e-4	0.1204	0.0167673
chr9	134718992	134719092	5524489	0	+	0.6	(0.57,0.629]	chr9	496485	99	INTRON	INTRON	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	3.72371	3.753525	3.78334	3.56034e-8	8.71641e-9	3.27617e-6	9.01694e-7
chr7	123685376	123685475	4837729	0	-	0.363636	(0.36,0.392]	chr7	433188	4	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.76763	3.7534549999999998	4.73928	0.00445622	5.12952e-7	0.0875511	3.78931e-5
chr19	38251612	38251711	9343231	0	+	0.545455	(0.526,0.57]	chr19	906826	71	INTRON	INTRON	SPINT2	ENSG00000167642.13	ENST00000590510.5	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	2.85481	3.7533399999999997	4.65187	2.35719e-5	3.22664e-12	0.00119414	5.24685e-10
chr1	173441334	173441418	805328	0	-	0.571429	(0.57,0.629]	chr1	89772	2	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000367716.3:ENST00000437190.2:ENST00000659863.1:ENST00000654140.1	lncRNA	lncRNA	lncRNA	lncRNA	2	14	2	2.75803	3.7531800000000004	4.74833	0.0030545	1.07277e-4	0.0697796	0.00442346
chr1	180259122	180259221	368780	0	+	0.656566	(0.629,1]	chr1	39964	103	INTRON	INTRON	LHX4	ENSG00000121454.6	ENST00000263726.4:ENST00000561113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	3.32274	3.7530900000000003	4.18344	0.00183228	7.60906e-4	0.0469284	0.0223166
chr17	39724725	39724818	8712540	0	+	0.591398	(0.57,0.629]	chr17	826005	1	CDS	CDS:UTR3:EXON_MRNA	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000578373.5:ENST00000583038.5:ENST00000580074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	69	2	3.73692	3.75271	3.7685	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	165654975	165655065	4267283	0	-	0.5	(0.49,0.526]	chr6	386861	2	UTR5	UTR5:EXON_MRNA:INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	95	2	3.43103	3.75263	4.07423	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	30634218	30634286	7131982	0	-	0.382353	(0.36,0.392]	chr12	654892	3	CDS	CDS:EXON_MRNA	IPO8	ENSG00000133704.10	ENST00000256079.9:ENST00000544829.5:ENST00000535598.1	protein_coding	protein_coding	protein_coding	protein_coding	27	74	2	3.66343	3.75098	3.83853	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	122846039	122846139	2728547	0	+	0.46	(0.459,0.49]	chr4	259610	183	INTRON	INTRON	FGF2	ENSG00000138685.17	ENST00000264498.8:ENST00000644866.2:ENST00000608478.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.91928	3.7495200000000004	4.57976	0.00264065	4.98571e-4	0.063308	0.0160179
chr3	125235428	125235528	2418001	0	-	0.46	(0.459,0.49]	chr3	231823	7	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	50	2	3.437	3.74709	4.05718	1.97131e-11	6.02196e-12	2.90585e-9	9.53718e-10
chr10	689493	689578	6036287	0	-	0.741176	(0.629,1]	chr10	541699	1	CDS_START	CDS_START:CDS:EXON_MRNA	DIP2C	ENSG00000151240.17	ENST00000280886.12:ENST00000634311.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.47168	3.746515	5.02135	0.00639682	9.70346e-6	0.114061	5.37523e-4
chr17	38900393	38900493	8710239	0	+	0.58	(0.57,0.629]	chr17	825549	13	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.95732	3.74609	4.53486	0.00848479	3.95206e-4	0.140721	0.0135724
chr22	46089949	46090048	9964058	0	+	0.59596	(0.57,0.629]	chr22	991763	34	INTRON	INTRON	MIRLET7BHG	ENSG00000197182.15	ENST00000381051.6:ENST00000691934.1:ENST00000443490.6:ENST00000687637.1:ENST00000686767.1:ENST00000435439.5:ENST00000360737.4:ENST00000686090.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	2.95732	3.74609	4.53486	0.00848479	3.95206e-4	0.140721	0.0135724
chrX	1420385	1420481	10249740	0	-	0.59375	(0.57,0.629]	chrX	1021433	9	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.95732	3.74609	4.53486	0.00848479	3.95206e-4	0.140721	0.0135724
chr3	125020960	125021045	2417548	0	-	0.576471	(0.57,0.629]	chr3	231793	3	CDS	CDS:EXON_MRNA	HEG1	ENSG00000173706.14	ENST00000311127.9	protein_coding	protein_coding	protein_coding	protein_coding	104	537	2	3.60379	3.74582	3.88785	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	65873134	65873234	6626263	0	-	0.59	(0.57,0.629]	chr11	606133	2	SS5_PROX	SS5_PROX:INTRON	EFEMP2	ENSG00000172638.13	ENST00000527378.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.20738	3.7458	4.28422	0.00279229	0.00145677	0.064521	0.0382827
chr17	5013352	5013452	8635632	0	+	0.59	(0.57,0.629]	chr17	815770	3	SS3_PROX	SS3_PROX:INTRON	KIF1C	ENSG00000129250.12	ENST00000320785.10	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	3.20738	3.7458	4.28422	0.00279229	0.00145677	0.064521	0.0382827
chr20	62035005	62035105	9775873	0	-	0.59	(0.57,0.629]	chr20	968987	199	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.20738	3.7458	4.28422	0.00279229	0.00145677	0.064521	0.0382827
chr8	80166443	80166542	5201569	0	-	0.585859	(0.57,0.629]	chr8	465854	77	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.20738	3.7458	4.28422	0.00279229	0.00145677	0.064521	0.0382827
chr4	2900926	2901025	2549645	0	+	0.535354	(0.526,0.57]	chr4	245139	16	EXON_MRNA	EXON_MRNA:INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1:ENST00000514940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	3.54588	3.745775	3.94567	2.75366e-5	3.05141e-7	0.00135076	2.36544e-5
chr2	91633443	91633543	1509566	0	-	0.5	(0.49,0.526]	chr2	156465	41	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	15	2	3.41836	3.74548	4.0726	0.00136895	1.93553e-5	0.0359623	9.87839e-4
chr15	40060958	40061056	7947620	0	+	0.55102	(0.526,0.57]	chr15	734098	3	INTRON	INTRON	SRP14-DT	ENSG00000248508.9	ENST00000559012.2:ENST00000668306.2:ENST00000692845.1:ENST00000655221.1:ENST00000504245.7:ENST00000667323.1	lncRNA	lncRNA	lncRNA	lncRNA	5	28	2	3.2798	3.745475	4.21115	1.38764e-5	1.29171e-8	7.44411e-4	1.28568e-6
chr19	40756633	40756732	9350801	0	+	0.454545	(0.424,0.459]	chr19	908586	48	INTRON	INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	3.37907	3.745	4.11093	2.98646e-4	5.36389e-5	0.0104901	0.00243585
chr20	8480341	8480441	9567128	0	+	0.44	(0.424,0.459]	chr20	947085	1083	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	3.37907	3.745	4.11093	2.98646e-4	5.36389e-5	0.0104901	0.00243585
chr10	121496626	121496722	6274203	0	-	0.552083	(0.526,0.57]	chr10	561496	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	3.23242	3.74486	4.2573	3.23436e-4	2.46218e-6	0.0113067	1.55994e-4
chr20	44501600	44501700	9748186	0	-	0.52	(0.49,0.526]	chr20	965703	3	SS3_PROX	SS3_PROX:INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	3.69706	3.74467	3.79228	1.11151e-7	5.01041e-8	9.3162e-6	4.48358e-6
chr2	201634803	201634876	1670755	0	-	0.39726	(0.392,0.424]	chr2	171744	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM237	ENSG00000155755.20	ENST00000409444.6:ENST00000409883.7:ENST00000621467.5:ENST00000686475.1:ENST00000471318.6:ENST00000286196.9:ENST00000432684.6:ENST00000444047.6:ENST00000489550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	27	2	3.65055	3.743315	3.83608	2.34553e-7	2.9067e-8	1.88437e-5	2.74698e-6
chr9	33441620	33441712	5605801	0	-	0.630435	(0.629,1]	chr9	501875	6	UTR3	UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	3.54506	3.742535	3.94001	2.07184e-4	7.28993e-6	0.00773072	4.19849e-4
chrM	8626	8722	10480463	0	+	0.364583	(0.36,0.392]	chrM	1038999	1	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	217	553	2	3.57894	3.74206	3.90518	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	154987463	154987561	4895349	0	-	0.5	(0.49,0.526]	chr7	438403	9	INTRON	INTRON	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5:ENST00000419436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	36	2	3.52344	3.741645	3.95985	4.05917e-8	3.94049e-9	3.71894e-6	4.2522e-7
chr12	43872922	43873022	6883115	0	+	0.34	(0.32,0.36]	chr12	628125	276	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	2.98798	3.741455	4.49493	4.39493e-4	1.01106e-5	0.0145031	5.51435e-4
chr17	56950903	56950996	8968606	0	-	0.365591	(0.36,0.392]	chr17	863330	12	CDS	CDS:EXON_MRNA	COIL	ENSG00000121058.5	ENST00000240316.5:ENST00000573008.1	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	3.47539	3.739445	4.0035	1.21509e-7	8.94078e-8	1.01303e-5	7.66803e-6
chr9	124610107	124610207	5733027	0	-	0.45	(0.424,0.459]	chr9	513813	144	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	3.66528	3.739345	3.81341	4.70625e-5	2.32912e-7	0.00217308	1.87449e-5
chr7	107550537	107550636	4808244	0	-	0.40404	(0.392,0.424]	chr7	431578	14	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000605888.1	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	2.46166	3.739315	5.01697	0.00113806	7.03248e-9	0.030384	7.35448e-7
chr7	5010060	5010160	4298219	0	+	0.34	(0.32,0.36]	chr7	389291	120	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000494947.5	lncRNA	lncRNA	lncRNA	lncRNA	2	9	2	3.31131	3.73801	4.16471	0.0111187	9.22891e-5	0.179068	0.00388567
chr7	110775302	110775402	4811450	0	-	0.33	(0.32,0.36]	chr7	431911	1099	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	3.31131	3.73801	4.16471	0.0111187	9.22891e-5	0.179068	0.00388567
chr12	4276220	4276320	6807279	0	+	0.53	(0.526,0.57]	chr12	621135	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4320	18825	2	3.72697	3.736725	3.74648	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	19400986	19401086	9987129	0	-	0.58	(0.57,0.629]	chr22	994232	25	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	32	2	3.46645	3.736625	4.0068	7.18507e-7	7.44494e-8	5.19319e-5	6.46264e-6
chr3	160566453	160566553	2069398	0	+	0.29	[0,0.32]	chr3	205511	3	SS5_PROX	SS5_PROX:INTRON	KRT8P12	ENSG00000229320.3	ENST00000468527.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	9	2	2.67572	3.73568	4.79564	0.00446905	5.01883e-4	0.0902927	0.0161742
chr4	41045093	41045193	2880968	0	-	0.29	[0,0.32]	chr4	271525	114	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000506352.5:ENST00000509446.5:ENST00000508707.5:ENST00000503264.5:ENST00000508676.5:ENST00000503503.5:ENST00000506999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	9	2	2.67572	3.73568	4.79564	0.00446905	5.01883e-4	0.0902927	0.0161742
chr2	113944352	113944451	1128936	0	+	0.373737	(0.36,0.392]	chr2	120946	16	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	3.20352	3.73351	4.2635	0.0019364	4.58367e-7	0.0476694	3.4135e-5
chr11	108244866	108244946	6486254	0	+	0.3625	(0.36,0.392]	chr11	586304	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000682430.1:ENST00000684037.1:ENST00000682516.1:ENST00000684061.1:ENST00000684179.1:ENST00000682956.1:ENST00000683100.1:ENST00000683605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.59992	3.732055	3.86419	0.00266188	1.86173e-5	0.0631592	9.46472e-4
chr4	105235740	105235840	2702171	0	+	0.49	(0.459,0.49]	chr4	257133	18	CDS	CDS:EXON_MRNA	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000413648.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	3.48704	3.731525	3.97601	7.08572e-7	9.59493e-9	5.07254e-5	9.74486e-7
chr1	45607597	45607689	136819	0	+	0.456522	(0.424,0.459]	chr1	16788	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	97	310	2	3.63361	3.731235	3.82886	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	37764873	37764972	9941323	0	+	0.525253	(0.49,0.526]	chr22	988385	47	INTRON	INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10:ENST00000403663.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.07223	3.7309900000000003	4.38975	9.92102e-4	9.76018e-4	0.0276375	0.0274227
chr1	46061028	46061128	601367	0	-	0.46	(0.459,0.49]	chr1	67496	37	INTRON	INTRON	PIK3R3	ENSG00000117461.15	ENST00000372006.5:ENST00000262741.10:ENST00000420542.5:ENST00000423209.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.64423	3.7306749999999997	3.81712	0.0120499	6.20842e-4	0.184357	0.0191195
chr21	37105155	37105254	9811687	0	+	0.464646	(0.459,0.49]	chr21	972638	62	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.64423	3.7306749999999997	3.81712	0.0120499	6.20842e-4	0.184357	0.0191195
chr21	46285186	46285286	9889555	0	-	0.46	(0.459,0.49]	chr21	981494	1	CDS_START	CDS_START:CDS:EXON_MRNA	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000426537.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.64423	3.7306749999999997	3.81712	0.0120499	6.20842e-4	0.184357	0.0191195
chr6	16261819	16261919	3720923	0	+	0.46	(0.459,0.49]	chr6	338130	33	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.64423	3.7306749999999997	3.81712	0.0120499	6.20842e-4	0.184357	0.0191195
chr12	123223627	123223725	7312453	0	-	0.408163	(0.392,0.424]	chr12	675409	1	INTRON	INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	16	2	3.3308	3.729845	4.12889	6.63878e-4	1.01794e-6	0.0199616	7.14423e-5
chr6	26522207	26522307	3749232	0	+	0.61	(0.57,0.629]	chr6	339870	6	EXON_LNCRNA	EXON_LNCRNA	HCG11	ENSG00000228223.3	ENST00000411553.3	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	3.60603	3.72979	3.85355	2.87788e-4	5.98045e-5	0.0101506	0.00266913
chr7	73308141	73308237	4729712	0	-	0.625	(0.57,0.629]	chr7	424098	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN5	ENSG00000130305.17	ENST00000438747.7:ENST00000428206.5:ENST00000471461.5:ENST00000252594.10:ENST00000310326.8:ENST00000455763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	3.68887	3.72966	3.77045	1.98886e-4	9.07674e-5	0.00746609	0.00383949
chr9	14693296	14693364	5578393	0	-	0.838235	(0.629,1]	chr9	500209	2	UTR5	UTR5:EXON_MRNA	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	3.63422	3.729415	3.82461	6.96796e-8	1.04073e-8	6.11526e-6	1.0495e-6
chr2	152663654	152663712	1581725	0	-	0.293103	[0,0.32]	chr2	163806	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000472760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	69	2	3.44129	3.7286599999999996	4.01603	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	47218173	47218272	9753488	0	-	0.535354	(0.526,0.57]	chr20	966641	51	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.48083	3.7278900000000004	3.97495	0.00110295	3.21576e-5	0.0304129	0.00156852
chr6	165909943	165910034	4269848	0	-	0.351648	(0.32,0.36]	chr6	386924	5	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000649362.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	29	2	3.58813	3.727255	3.86638	4.84532e-8	4.22289e-9	4.40804e-6	4.54171e-7
chr7	67285091	67285191	4726186	0	-	0.5	(0.49,0.526]	chr7	423841	104	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	14	2	2.81323	3.7272499999999997	4.64127	8.35112e-4	2.4929e-4	0.0240064	0.0089494
chr9	127612312	127612403	5498366	0	+	0.791209	(0.629,1]	chr9	491510	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	STXBP1	ENSG00000136854.24	ENST00000637521.2:ENST00000625363.2:ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000627871.2:ENST00000630492.2:ENST00000650920.1:ENST00000476182.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	251	2	3.69187	3.7269550000000002	3.76204	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73845230	73845330	10373665	0	-	0.5	(0.49,0.526]	chrX	1029968	79	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650366.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	3	14	2	2.41199	3.7268850000000002	5.04178	0.00770591	1.57703e-5	0.135524	8.20905e-4
chr3	171140398	171140453	2491796	0	-	0.636364	(0.629,1]	chr3	238740	1	CDS	CDS:EXON_MRNA	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.61923	3.725625	4.83202	1.16343e-4	4.13761e-5	0.00468971	0.00192437
chr10	5911818	5911913	5779494	0	+	0.536842	(0.526,0.57]	chr10	520800	3	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.75687	3.725245	4.69362	0.00442955	1.98837e-4	0.0875511	0.00746609
chr19	12933696	12933714	9444224	0	-	0.555556	(0.526,0.57]	chr19	927267	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000592662.5:ENST00000587981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	2.75687	3.725245	4.69362	0.00442955	1.98837e-4	0.0875511	0.00746609
chr2	75650562	75650660	1082104	0	+	0.55102	(0.526,0.57]	chr2	115424	30	INTRON	INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000476622.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.75687	3.725245	4.69362	0.00442955	1.98837e-4	0.0875511	0.00746609
chr8	25339597	25339694	4951095	0	+	0.56701	(0.526,0.57]	chr8	443448	29	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	57	2	3.01639	3.724775	4.43316	6.33134e-11	1e-12	8.7817e-9	1.73382e-10
chr17	513947	514047	8829452	0	-	0.48	(0.459,0.49]	chr17	842532	54	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	111	2	3.69364	3.724355	3.75507	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	41170543	41170635	9653377	0	+	0.565217	(0.526,0.57]	chr20	953470	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PLCG1	ENSG00000124181.15	ENST00000244007.7:ENST00000373271.5:ENST00000685551.1:ENST00000477870.5:ENST00000483175.5:ENST00000612731.2:ENST00000599785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	45	2	3.38795	3.724335	4.06072	1.57186e-8	3.81384e-12	1.55217e-6	6.15163e-10
chr4	22388756	22388851	2862227	0	-	0.463158	(0.459,0.49]	chr4	269754	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ADGRA3	ENSG00000152990.14	ENST00000511051.5:ENST00000334304.10:ENST00000499527.6:ENST00000282943.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.56515	3.7238100000000003	3.88247	0.0104144	8.21277e-4	0.170122	0.0238805
chr17	30772143	30772242	8691936	0	+	0.555556	(0.526,0.57]	chr17	822918	18	INTRON	INTRON	SUZ12P1	ENSG00000264538.7	ENST00000578195.6:ENST00000582329.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	14	2	2.59957	3.723755	4.84794	0.00283719	6.50622e-5	0.0662445	0.00284455
chr18	54175443	54175543	9229690	0	-	0.5	(0.49,0.526]	chr18	888850	89	INTRON	INTRON	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000578272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	3.28942	3.72328	4.15714	0.00319561	1.30816e-5	0.0699484	7.02911e-4
chr22	30354457	30354556	10012466	0	-	0.515152	(0.49,0.526]	chr22	997478	10	INTRON	INTRON	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000447376.1:ENST00000463818.1:ENST00000496189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	3.70699	3.721965	3.73694	6.7032e-6	3.40684e-6	3.89775e-4	2.10826e-4
chr7	117297787	117297876	4826911	0	-	0.573034	(0.57,0.629]	chr7	432409	3	CDS	CDS:UTR3:EXON_MRNA	WNT2	ENSG00000105989.10	ENST00000647844.1:ENST00000265441.8:ENST00000449446.5:ENST00000491214.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	129	658	2	3.70679	3.7208699999999997	3.73495	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	204473673	204473773	842916	0	-	0.43	(0.424,0.459]	chr1	93787	34	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000415899.2:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	3.5463	3.720535	3.89477	0.00153741	2.5121e-4	0.0389999	0.00902798
chr1	46010329	46010429	139262	0	+	0.45	(0.424,0.459]	chr1	16931	2	SS3_PROX	SS3_PROX:INTRON	MAST2	ENSG00000086015.23	ENST00000361297.7:ENST00000372008.6:ENST00000674079.1:ENST00000482881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	3.64041	3.720275	3.80014	0.00115507	3.54639e-4	0.0316008	0.0120332
chr20	3012574	3012673	9555676	0	+	0.454545	(0.424,0.459]	chr20	946064	48	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.64041	3.720275	3.80014	0.00115507	3.54639e-4	0.0316008	0.0120332
chr8	115555036	115555136	5251852	0	-	0.43	(0.424,0.459]	chr8	469484	394	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.64041	3.720275	3.80014	0.00115507	3.54639e-4	0.0316008	0.0120332
chr8	138803434	138803532	5287256	0	-	0.346939	(0.32,0.36]	chr8	472559	1	INTRON	INTRON	COL22A1	ENSG00000169436.17	ENST00000303045.11:ENST00000435777.2	protein_coding	protein_coding	protein_coding	protein_coding	17	44	2	3.50671	3.7197899999999997	3.93287	2.86701e-10	1e-12	3.62647e-8	1.73382e-10
chr5	102983796	102983896	3266086	0	+	0.39	(0.36,0.392]	chr5	300855	90	INTRON	INTRON	PAM	ENSG00000145730.21	ENST00000510208.2:ENST00000304400.12:ENST00000684529.1:ENST00000438793.8:ENST00000455264.7:ENST00000682972.1:ENST00000682882.1:ENST00000682024.1:ENST00000348126.7:ENST00000684379.1:ENST00000684043.1:ENST00000682407.1:ENST00000345721.6:ENST00000346918.7:ENST00000379799.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	23	2	2.67997	3.718685	4.7574	4.59585e-4	2.00235e-10	0.0151123	2.59963e-8
chr2	210646762	210646862	1296832	0	+	0.42	(0.392,0.424]	chr2	134205	37	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1:ENST00000497121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	26	2	3.34508	3.718255	4.09143	1.6765e-6	1.45195e-8	1.10008e-4	1.44044e-6
chr5	132616066	132616130	3318631	0	+	0.328125	(0.32,0.36]	chr5	304448	2	CDS	CDS:UTR3:EXON_MRNA	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	50	121	2	3.70041	3.7179900000000004	3.73557	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	99635171	99635271	8098781	0	+	0.4	(0.392,0.424]	chr15	748818	16	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	10	2	3.39796	3.7174949999999995	4.03703	0.00439831	1.48653e-4	0.0875511	0.00578975
chr3	132474931	132475008	1997984	0	+	0.376623	(0.36,0.392]	chr3	201124	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJC13	ENSG00000138246.17	ENST00000260818.11:ENST00000650455.1:ENST00000464766.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.52068	3.7157999999999998	3.91092	0.00324516	5.00165e-4	0.0730386	0.0160179
chrX	73826298	73826397	10373470	0	-	0.383838	(0.36,0.392]	chrX	1029941	58	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	2	9	2	3.52068	3.7157999999999998	3.91092	0.00324516	5.00165e-4	0.0730386	0.0160179
chr12	45956492	45956592	7151704	0	-	0.38	(0.36,0.392]	chr12	656535	3	SS3_PROX	SS3_PROX:INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	9	2	3.59992	3.715525	3.83113	0.00266188	6.41601e-4	0.0631592	0.0193935
chr12	54178590	54178688	7172081	0	-	0.387755	(0.36,0.392]	chr12	660536	31	INTRON	INTRON	SMUG1	ENSG00000123415.16	ENST00000635234.1:ENST00000635546.1:ENST00000509864.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	9	2	3.59992	3.715525	3.83113	0.00266188	6.41601e-4	0.0631592	0.0193935
chr2	27438984	27439077	961584	0	+	0.387097	(0.36,0.392]	chr2	105258	13	INTRON	INTRON	NRBP1	ENSG00000115216.14	ENST00000233557.7:ENST00000379852.8:ENST00000379863.7:ENST00000460499.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.59992	3.715525	3.83113	0.00266188	6.41601e-4	0.0631592	0.0193935
chr3	107662144	107662244	1948124	0	+	0.37	(0.36,0.392]	chr3	196203	2	SS5_PROX	SS5_PROX:INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5:ENST00000413213.5:ENST00000449271.5:ENST00000425868.5:ENST00000449213.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	3.59992	3.715525	3.83113	0.00266188	6.41601e-4	0.0631592	0.0193935
chr1	6475930	6475983	504932	0	-	0.622642	(0.57,0.629]	chr1	54476	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PLEKHG5	ENSG00000171680.23	ENST00000377740.5:ENST00000673471.2:ENST00000400915.8:ENST00000377732.5:ENST00000675548.1:ENST00000377748.6:ENST00000377728.8:ENST00000340850.10:ENST00000377725.5:ENST00000400913.6:ENST00000674790.1:ENST00000535355.6:ENST00000489097.6:ENST00000675694.1:ENST00000675123.1:ENST00000537245.6:ENST00000675093.1:ENST00000676287.1:ENST00000675655.1:ENST00000676362.1:ENST00000674803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	3.17268	3.71535	4.25802	1.80485e-5	1.55189e-6	9.19279e-4	1.02479e-4
chr3	129263503	129263603	1988826	0	+	0.56	(0.526,0.57]	chr3	200095	2	SS3_PROX	SS3_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	3.57534	3.715095	3.85485	7.52975e-7	1.06198e-8	5.33699e-5	1.07574e-6
chr7	140398473	140398532	4871763	0	-	0.779661	(0.629,1]	chr7	435996	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000460560.5:ENST00000490760.5:ENST00000464865.5:ENST00000469193.5:ENST00000461089.5:ENST00000462881.1:ENST00000495257.1:ENST00000491505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	40	2	2.71102	3.714955	4.71889	3.98595e-5	5.53289e-10	0.00187459	6.76196e-8
chr19	40685651	40685750	9498895	0	-	0.474747	(0.459,0.49]	chr19	935853	12	EXON_MRNA	EXON_MRNA:INTRON	NUMBL	ENSG00000105245.9	ENST00000252891.8:ENST00000598779.5:ENST00000540131.5:ENST00000598773.5:ENST00000595741.5:ENST00000600636.5:ENST00000599594.1:ENST00000598759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	25	2	3.48645	3.71399	3.94153	6.16705e-5	1.39656e-8	0.00276144	1.38361e-6
chr3	169785561	169785649	2075232	0	+	0.397727	(0.392,0.424]	chr3	205780	5	INTRON	INTRON	MYNN	ENSG00000085274.16	ENST00000349841.10:ENST00000602751.5:ENST00000356716.8:ENST00000544106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	28	2	3.33618	3.713805	4.09143	2.59414e-7	1.45195e-8	2.01683e-5	1.44044e-6
chr20	25469107	25469202	9720075	0	-	0.673684	(0.629,1]	chr20	962090	13	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.54506	3.71343	3.8818	0.0064023	2.07184e-4	0.114061	0.00773072
chr1	220200022	220200122	862798	0	-	0.49	(0.459,0.49]	chr1	95880	28	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	3.56953	3.712875	3.85622	4.08493e-5	2.91058e-8	0.00193677	2.73209e-6
chr1	21292454	21292554	538557	0	-	0.44	(0.424,0.459]	chr1	59227	19	INTRON	INTRON	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000649812.1:ENST00000481130.6:ENST00000527991.2:ENST00000463334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	3.12644	3.7126650000000003	4.29889	2.23036e-4	1.12945e-5	0.00816414	6.02727e-4
chr12	128687535	128687635	7051805	0	+	0.62	(0.57,0.629]	chr12	646508	176	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	3.26242	3.712535	4.16265	1.01567e-5	4.96637e-9	5.53203e-4	5.3218e-7
chr1	193247732	193247832	388406	0	+	0.48	(0.459,0.49]	chr1	41752	95	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1:ENST00000477868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	3.64423	3.712085	3.77994	6.20842e-4	2.14818e-4	0.0191195	0.00789628
chr8	42909857	42909957	4976991	0	+	0.48	(0.459,0.49]	chr8	446588	32	INTRON	INTRON	HOOK3	ENSG00000168172.9	ENST00000527306.1:ENST00000307602.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.64423	3.712085	3.77994	6.20842e-4	2.14818e-4	0.0191195	0.00789628
chr17	79947644	79947737	9026334	0	-	0.526882	(0.526,0.57]	chr17	871597	1	CDS	CDS:EXON_MRNA	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000576768.5:ENST00000340848.11:ENST00000572862.5:ENST00000570373.5:ENST00000574241.6:ENST00000573782.5:ENST00000574427.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.97094	3.71181	4.45268	0.0014221	4.08411e-7	0.0370226	3.06417e-5
chr19	17835082	17835148	9456511	0	-	0.621212	(0.57,0.629]	chr19	929771	1	CDS	CDS:EXON_MRNA:INTRON	JAK3	ENSG00000105639.20	ENST00000527031.5:ENST00000458235.7:ENST00000527670.5:ENST00000534444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	36	2	2.67232	3.710275	4.74823	3.91089e-6	2.15631e-9	2.38665e-4	2.42843e-7
chr19	42251288	42251388	9503864	0	-	0.61	(0.57,0.629]	chr19	936719	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ERF	ENSG00000105722.10	ENST00000222329.9:ENST00000440177.6:ENST00000593944.5:ENST00000596818.1:ENST00000595941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	3.68887	3.7092549999999997	3.72964	1.98886e-4	1.49677e-6	0.00746609	1.01308e-4
chr10	5689443	5689542	5778474	0	+	0.575758	(0.57,0.629]	chr10	520592	39	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.50295	3.70924	3.91553	0.00651627	6.5426e-4	0.114061	0.0199608
chr16	189873	189963	8486127	0	-	0.611111	(0.57,0.629]	chr16	794108	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LUC7L	ENSG00000007392.17	ENST00000337351.8:ENST00000426094.5:ENST00000397783.5:ENST00000629543.2:ENST00000490762.5:ENST00000293872.13:ENST00000429378.5:ENST00000468732.5:ENST00000464711.5:ENST00000442701.1:ENST00000419516.5:ENST00000397780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	3.50295	3.70924	3.91553	0.00651627	6.5426e-4	0.114061	0.0199608
chr15	90598967	90599061	8080997	0	+	0.62766	(0.57,0.629]	chr15	747264	6	UTR3	UTR3:EXON_MRNA:INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000687075.1:ENST00000561119.5:ENST00000558005.1:ENST00000558496.5:ENST00000561255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	39	2	3.25415	3.7084	4.16265	5.78668e-8	4.96637e-9	5.07935e-6	5.3218e-7
chr2	11253292	11253392	1381019	0	-	0.35	(0.32,0.36]	chr2	143158	31	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000431087.1:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	7	2	3.08717	3.7083449999999996	4.32952	0.00535148	0.00388505	0.100211	0.0816719
chr9	70193912	70194012	5395880	0	+	0.35	(0.32,0.36]	chr9	481902	229	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	3.08717	3.7083449999999996	4.32952	0.00535148	0.00388505	0.100211	0.0816719
chr8	108246631	108246730	5246248	0	-	0.525253	(0.49,0.526]	chr8	469256	33	EXON_MRNA	EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	41	2	2.81721	3.7075750000000003	4.59794	4.33804e-7	1.09148e-11	3.24334e-5	1.68043e-9
chr4	165328030	165328122	2781095	0	+	0.48913	(0.459,0.49]	chr4	263777	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.91928	3.70739	4.4955	0.00264065	5.33756e-7	0.063308	3.92587e-5
chr11	95904861	95904961	6712832	0	-	0.43	(0.424,0.459]	chr11	613384	162	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.0068	3.706395	4.40599	0.00341471	0.00154565	0.0729529	0.0389999
chr17	67343529	67343625	8996556	0	-	0.4375	(0.424,0.459]	chr17	866989	9	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.0068	3.706395	4.40599	0.00341471	0.00154565	0.0729529	0.0389999
chr1	999249	999340	491052	0	-	0.813187	(0.629,1]	chr1	51978	2	CDS	CDS:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	3.68789	3.705795	3.7237	4.75614e-5	5.42566e-7	0.00218277	3.98095e-5
chr3	54401263	54401363	1887273	0	+	0.36	(0.32,0.36]	chr3	192367	141	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000492460.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	13	2	3.6551	3.705785	3.75647	2.11023e-4	6.44559e-5	0.00785	0.00284455
chr16	85782895	85782994	8613996	0	-	0.474747	(0.459,0.49]	chr16	812492	11	INTRON	INTRON	EMC8	ENSG00000131148.9	ENST00000435200.2:ENST00000253457.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	3.40387	3.704885	4.0059	1.53229e-4	3.28131e-7	0.00595859	2.53115e-5
chr12	43955239	43955339	6883939	0	+	0.46	(0.459,0.49]	chr12	628131	105	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	39	2	3.56018	3.704045	3.84791	2.77216e-9	1.07939e-9	3.07081e-7	1.27136e-7
chr3	67651407	67651507	2330691	0	-	0.47	(0.459,0.49]	chr3	225861	415	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.13407	3.703455	4.27284	0.00227779	7.72738e-4	0.0552099	0.0225969
chr5	109797320	109797419	3273354	0	+	0.363636	(0.36,0.392]	chr5	301372	27	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	14	2	3.45885	3.70299	3.94713	4.24507e-4	1.25643e-5	0.0140677	6.61709e-4
chr17	62687888	62687988	8769879	0	+	0.39	(0.36,0.392]	chr17	834590	2	SS3_PROX	SS3_PROX:INTRON	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000583597.5:ENST00000446119.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	14	2	3.54131	3.70275	3.86419	3.17078e-4	1.86173e-5	0.0111061	9.46472e-4
chr6	30329041	30329141	3751970	0	+	0.38	(0.36,0.392]	chr6	340520	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM39	ENSG00000204599.15	ENST00000396551.8:ENST00000458516.5:ENST00000440271.5:ENST00000376656.8:ENST00000428728.5:ENST00000396548.5:ENST00000428404.5:ENST00000376659.9:ENST00000428555.1:ENST00000396547.5	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	3.54131	3.70275	3.86419	3.17078e-4	1.86173e-5	0.0111061	9.46472e-4
chr22	25070516	25070616	9912795	0	+	0.43	(0.424,0.459]	chr22	984732	1	SS5_PROX	SS5_PROX:INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	3.1045	3.701695	4.29889	4.34131e-5	1.12945e-5	0.00200039	6.02727e-4
chr2	62927531	62927631	1050819	0	+	0.28	[0,0.32]	chr2	111869	459	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	3.52126	3.70158	3.8819	1.10521e-6	3.37069e-9	7.70128e-5	3.69694e-7
chr5	128080377	128080477	3586857	0	-	0.35	(0.32,0.36]	chr5	325664	29	INTRON	INTRON	SLC12A2-DT	ENSG00000245937.9	ENST00000499346.7:ENST00000514409.6:ENST00000661296.1:ENST00000657475.2:ENST00000689029.1:ENST00000687795.1:ENST00000661552.2:ENST00000660408.1:ENST00000501652.5:ENST00000501173.6:ENST00000514573.5:ENST00000508353.5:ENST00000660180.1:ENST00000659990.1:ENST00000665599.1:ENST00000501702.7:ENST00000668567.1:ENST00000657683.1:ENST00000668265.1:ENST00000508878.5:ENST00000656154.1:ENST00000656563.1:ENST00000663976.1:ENST00000664006.1:ENST00000663841.1:ENST00000655628.1:ENST00000654888.1:ENST00000606251.2	lncRNA	lncRNA	lncRNA	lncRNA	2	7	2	2.97267	3.70115	4.42963	0.00701727	0.00312289	0.122029	0.0697855
chr17	7884795	7884806	8642282	0	+	0.636364	(0.629,1]	chr17	817407	1	UTR5	UTR5:EXON_MRNA	CHD3	ENSG00000170004.18	ENST00000380358.9	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.60202	3.700985	3.79995	1.20607e-4	2.99254e-5	0.00489816	0.00144698
chr15	35339856	35339956	8129753	0	-	0.37	(0.36,0.392]	chr15	752245	84	INTRON	INTRON	DPH6	ENSG00000134146.12	ENST00000560386.5:ENST00000558973.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	22	2	3.094	3.700875	4.30775	1.4895e-4	2.53752e-9	0.00574636	2.82933e-7
chr15	63744223	63744323	8210771	0	-	0.59	(0.57,0.629]	chr15	761406	90	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	3.42043	3.700555	3.98068	0.0053729	9.02612e-4	0.100211	0.0258498
chr10	122412440	122412536	6006913	0	+	0.458333	(0.424,0.459]	chr10	539250	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PLEKHA1	ENSG00000107679.15	ENST00000494222.5:ENST00000368990.8:ENST00000368989.6:ENST00000463663.6:ENST00000392799.7:ENST00000368988.5:ENST00000433307.2:ENST00000481451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	9	2	2.90943	3.6987249999999996	4.48802	0.00449434	0.00121831	0.0875511	0.0326347
chr11	32102085	32102177	6364331	0	+	0.554348	(0.526,0.57]	chr11	570023	2	EXON_MRNA	EXON_MRNA:INTRON	RCN1	ENSG00000049449.10	ENST00000054950.4:ENST00000533898.5:ENST00000532474.5:ENST00000527337.1:ENST00000531345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	31	2	2.72589	3.6984500000000002	4.67101	3.65316e-6	2.77771e-8	2.23016e-4	2.62893e-6
chrM	1028	1124	10480392	0	+	0.395833	(0.392,0.424]	chrM	1038986	5	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	629	1729	2	3.69151	3.6979100000000003	3.70431	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	121694737	121694837	2404734	0	-	0.38	(0.36,0.392]	chr3	230482	11	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695040.1:ENST00000695108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	52	133	2	3.09389	3.696875	4.29986	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	43138664	43138764	3167306	0	+	0.33	(0.32,0.36]	chr5	292366	1	SS3_PROX	SS3_PROX:INTRON	ZNF131	ENSG00000172262.12	ENST00000515326.5:ENST00000682664.1:ENST00000510026.5:ENST00000504359.1:ENST00000509156.5:ENST00000508259.5:ENST00000507218.5:ENST00000306938.8:ENST00000505606.6:ENST00000509634.5:ENST00000509341.5:ENST00000511736.5:ENST00000509931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	13	2	3.59803	3.69663	3.79523	0.00267453	4.52264e-6	0.0637459	2.71924e-4
chr13	51711024	51711124	7386433	0	+	0.42	(0.392,0.424]	chr13	682501	70	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	3.4131	3.696335	3.97957	4.95123e-6	4.16676e-6	2.96695e-4	2.48371e-4
chr1	43423616	43423716	126505	0	+	0.58	(0.57,0.629]	chr1	15073	3	SS5_PROX	SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.10805	3.696135	4.28422	0.00145677	3.71519e-4	0.0382827	0.0125602
chr1	212734134	212734233	854119	0	-	0.333333	(0.32,0.36]	chr1	95139	71	UTR3	UTR3:EXON_MRNA:INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.65381	3.695585	4.73736	0.0110381	5.18532e-7	0.179068	3.83329e-5
chrX	73831065	73831161	10373520	0	-	0.46875	(0.459,0.49]	chrX	1029956	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	16	65	2	3.6412	3.695475	3.74975	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	33684943	33685043	3759938	0	+	0.65	(0.629,1]	chr6	343396	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITPR3	ENSG00000096433.11	ENST00000374316.9:ENST00000605930.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.05121	3.6951	4.33899	0.00356029	8.51164e-4	0.0753972	0.0245129
chr1	154242787	154242858	303513	0	+	0.394366	(0.392,0.424]	chr1	32647	2	SS3_PROX	SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	2.84278	3.694895	4.54701	0.00949728	0.00102713	0.16275	0.0276375
chr1	198315915	198316014	391193	0	+	0.414141	(0.392,0.424]	chr1	42036	183	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	8	2	2.84278	3.694895	4.54701	0.00949728	0.00102713	0.16275	0.0276375
chr5	52805242	52805341	3171379	0	+	0.424242	(0.392,0.424]	chr5	292824	13	INTRON	INTRON	ITGA1	ENSG00000213949.10	ENST00000282588.7:ENST00000650673.1:ENST00000504086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	2.84278	3.694895	4.54701	0.00949728	0.00102713	0.16275	0.0276375
chr5	453856	453953	3108708	0	+	0.474227	(0.459,0.49]	chr5	287882	6	CDS	CDS:EXON_MRNA	EXOC3	ENSG00000180104.16	ENST00000512944.6:ENST00000515601.6:ENST00000315013.9:ENST00000503889.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	151	2	3.61251	3.693675	3.77484	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	122409633	122409733	7308323	0	-	0.52	(0.49,0.526]	chr12	674854	90	INTRON	INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000620786.5:ENST00000537178.5:ENST00000539080.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.25397	3.69299	4.13201	0.00365962	8.48086e-6	0.0766409	4.76746e-4
chr7	55174820	55174920	4391461	0	+	0.56	(0.526,0.57]	chr7	395548	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	39	171	2	3.63245	3.69272	3.75299	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	1080022	1080118	9260257	0	+	0.677083	(0.629,1]	chr19	891972	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ARHGAP45	ENSG00000180448.11	ENST00000539243.6:ENST00000313093.7:ENST00000587602.5:ENST00000591293.2:ENST00000590214.5:ENST00000586866.5:ENST00000543365.5:ENST00000590577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.55191	3.6919649999999997	4.83202	0.004809	4.13761e-5	0.0964485	0.00192437
chrX	44955183	44955283	10118454	0	+	0.35	(0.32,0.36]	chrX	1008809	808	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	8	2	2.65381	3.690155	4.7265	0.0110381	6.12159e-4	0.179068	0.0189985
chr12	123511664	123511763	7314342	0	-	0.525253	(0.49,0.526]	chr12	675726	118	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	3.33171	3.690035	4.04836	1.30693e-4	1.40005e-7	0.00517526	1.16776e-5
chr1	155677340	155677434	777648	0	-	0.414894	(0.392,0.424]	chr1	85804	2	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000493625.5:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5:ENST00000466366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	8	2	2.76656	3.6897450000000003	4.61293	0.0113141	8.49057e-4	0.181488	0.0240064
chr10	87147251	87147351	5925256	0	+	0.4	(0.392,0.424]	chr10	531085	499	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	2.76656	3.6897450000000003	4.61293	0.0113141	8.49057e-4	0.181488	0.0240064
chr6	57336626	57336726	3798833	0	+	0.42	(0.392,0.424]	chr6	348632	102	INTRON	INTRON	PRIM2	ENSG00000146143.19	ENST00000419977.4:ENST00000672107.1:ENST00000615550.5:ENST00000671770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	8	2	2.76656	3.6897450000000003	4.61293	0.0113141	8.49057e-4	0.181488	0.0240064
chr7	111392019	111392119	4817623	0	-	0.35	(0.32,0.36]	chr7	431934	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	3.35769	3.68947	4.02125	3.53532e-4	3.03605e-6	0.0122629	1.89971e-4
chr12	22659154	22659251	6846374	0	+	0.247423	[0,0.32]	chr12	625348	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	3.35176	3.6882400000000004	4.02472	0.0102933	8.66912e-6	0.170122	4.85864e-4
chr3	170154890	170154990	2490398	0	-	0.44	(0.424,0.459]	chr3	238537	38	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	3.0068	3.68823	4.36966	0.00341471	3.96287e-6	0.0729529	2.39291e-4
chr5	80793543	80793643	3233657	0	+	0.48	(0.459,0.49]	chr5	298798	3	INTRON	INTRON	MSH3	ENSG00000113318.11	ENST00000265081.7:ENST00000670357.1:ENST00000667069.1:ENST00000658259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.96081	3.6880550000000003	4.4153	4.52907e-4	8.98032e-7	0.0150584	6.37943e-5
chr3	119850337	119850437	2400120	0	-	0.38	(0.36,0.392]	chr3	229991	25	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000678013.1:ENST00000676910.1:ENST00000679201.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	16	2	3.4283	3.687715	3.94713	5.8205e-5	1.25643e-5	0.0026464	6.61709e-4
chr7	73186404	73186503	4425670	0	+	0.363636	(0.36,0.392]	chr7	397365	13	INTRON	INTRON	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	16	2	3.4283	3.687715	3.94713	5.8205e-5	1.25643e-5	0.0026464	6.61709e-4
chrX	53225155	53225244	10344220	0	-	0.651685	(0.629,1]	chrX	1027210	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KDM5C	ENSG00000126012.13	ENST00000687695.1:ENST00000685641.1:ENST00000688699.1:ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000691505.1:ENST00000375379.7:ENST00000375383.7:ENST00000465402.2:ENST00000687928.1:ENST00000685539.1:ENST00000429877.5:ENST00000428012.1:ENST00000349663.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	3.16128	3.6874650000000004	4.21365	4.25699e-7	2.86088e-7	3.19936e-5	2.19976e-5
chr2	231464452	231464551	1722204	0	-	0.636364	(0.629,1]	chr2	176790	2	UTR5	UTR5:EXON_MRNA:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	58	2	3.55438	3.686935	3.81949	5.19124e-10	2.86182e-10	6.35649e-8	3.57987e-8
chr2	3286219	3286319	1372036	0	-	0.44	(0.424,0.459]	chr2	141956	35	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	3.64041	3.6866000000000003	3.73279	0.00115507	1.78903e-5	0.0316008	9.13813e-4
chr10	102145880	102145977	5961741	0	+	0.412371	(0.392,0.424]	chr10	535116	4	INTRON	INTRON	PPRC1	ENSG00000148840.11	ENST00000413464.6:ENST00000278070.7:ENST00000370012.1:ENST00000489648.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	18	2	3.62464	3.68655	3.74846	1.11057e-4	1.33045e-6	0.00448562	9.05848e-5
chr5	59128990	59129090	3473518	0	-	0.38	(0.36,0.392]	chr5	319179	375	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	11	2	3.54131	3.68622	3.83113	6.41601e-4	3.17078e-4	0.0193935	0.0111061
chr15	56969767	56969867	7983819	0	+	0.38	(0.36,0.392]	chr15	738460	483	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	11	2	3.28561	3.68603	4.08645	0.0015215	1.23682e-4	0.0397018	0.0049353
chr17	29884622	29884722	8905809	0	-	0.37	(0.36,0.392]	chr17	853496	353	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000578411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	11	2	3.28561	3.68603	4.08645	0.0015215	1.23682e-4	0.0397018	0.0049353
chr17	43258357	43258457	8938045	0	-	0.53	(0.526,0.57]	chr17	859071	282	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	38	165	2	3.53636	3.685745	3.83513	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	95928734	95928834	3552067	0	-	0.32	[0,0.32]	chr5	323467	88	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000508694.1:ENST00000635633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	10	2	3.12911	3.6854299999999998	4.24175	0.00484145	6.90565e-5	0.0964485	0.00300464
chr13	48427131	48427231	7376568	0	+	0.52	(0.49,0.526]	chr13	681714	453	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	15	65	2	3.3938	3.685305	3.97681	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	183289835	183289935	2804078	0	+	0.65	(0.629,1]	chr4	265108	2	SS5_PROX	SS5_PROX:INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5:ENST00000508747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.9761	3.68527	4.39444	0.00463564	6.41849e-4	0.089408	0.0196462
chr5	75476461	75476561	3503695	0	-	0.38	(0.36,0.392]	chr5	320936	169	INTRON	INTRON	CERT1	ENSG00000113163.19	ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1:ENST00000405807.10:ENST00000643780.2:ENST00000646511.1:ENST00000643158.1:ENST00000644377.1:ENST00000646302.1:ENST00000643773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	11	2	3.20352	3.68507	4.16662	0.0019364	9.16296e-5	0.0476694	0.00387303
chr14	75047766	75047865	7869433	0	-	0.272727	[0,0.32]	chr14	725223	15	CDS	CDS:EXON_MRNA	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7:ENST00000556257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.05093	3.684845	4.31876	0.00583312	5.15904e-5	0.107081	0.00235512
chr16	70539407	70539507	8427086	0	+	0.58	(0.57,0.629]	chr16	789661	2	SS5_PROX	SS5_PROX:INTRON	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	3.19526	3.68484	4.17442	2.48707e-4	2.71799e-6	0.0089842	1.71473e-4
chr3	99819442	99819542	1934977	0	+	0.27	[0,0.32]	chr3	195309	10	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	10	2	3.61847	3.68443	3.75039	0.00182075	2.40709e-4	0.0469284	0.00878409
chr12	4661639	4661737	6809058	0	+	0.459184	(0.424,0.459]	chr12	621446	21	INTRON	INTRON	NDUFA9	ENSG00000139180.11	ENST00000539573.5:ENST00000266544.10:ENST00000396655.6:ENST00000535726.5:ENST00000544675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	19	2	2.90943	3.683955	4.45848	0.00449434	5.48586e-9	0.0875511	5.79354e-7
chr3	136873412	136873512	2012779	0	+	0.41	(0.392,0.424]	chr3	202168	55	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	3.3308	3.683915	4.03703	6.63878e-4	1.48653e-4	0.0199616	0.00578975
chr6	52274216	52274316	4083099	0	-	0.46	(0.459,0.49]	chr6	371981	3	SS3_PROX	SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	3.32099	3.6837750000000002	4.04656	2.2051e-4	3.80472e-5	0.00809052	0.00181622
chr14	74841360	74841459	7703589	0	+	0.484848	(0.459,0.49]	chr14	708072	42	INTRON	INTRON	YLPM1	ENSG00000119596.18	ENST00000554107.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.00648	3.68364	4.3608	0.0112903	2.23014e-6	0.181488	1.43671e-4
chr12	133118393	133118493	7327652	0	-	0.38	(0.36,0.392]	chr12	677422	116	UTR3	UTR3:EXON_MRNA:INTRON	ZNF891	ENSG00000214029.6	ENST00000537226.3:ENST00000650709.1	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	3.10651	3.68357	4.26063	0.00451705	8.23373e-4	0.0875511	0.0238997
chr3	125594800	125594899	2420837	0	-	0.373737	(0.36,0.392]	chr3	232049	1	UTR5	UTR5:EXON_MRNA	OSBPL11	ENSG00000144909.8	ENST00000296220.6	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	3.10651	3.68357	4.26063	0.00451705	8.23373e-4	0.0875511	0.0238997
chr1	35192312	35192403	568169	0	-	0.802198	(0.629,1]	chr1	63821	2	CDS	CDS:EXON_MRNA	SFPQ	ENSG00000116560.12	ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.71102	3.6833799999999997	4.65574	3.98595e-5	1.50585e-9	0.00187459	1.73555e-7
chr1	219196545	219196645	433189	0	+	0.43	(0.424,0.459]	chr1	46534	29	INTRON	INTRON	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	77	2	3.56416	3.683005	3.80185	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24010284	24010384	10296510	0	-	0.46	(0.459,0.49]	chrX	1024046	32	INTRON	INTRON	KLHL15	ENSG00000174010.10	ENST00000685367.1:ENST00000689334.1:ENST00000328046.8:ENST00000693269.1:ENST00000692681.1:ENST00000684871.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.08436	3.68255	4.28074	0.00939464	3.57604e-6	0.161654	2.18487e-4
chr12	132035801	132035900	7057927	0	+	0.585859	(0.57,0.629]	chr12	647307	33	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	42	2	2.77974	3.6817450000000003	4.58375	3.15524e-6	4.81393e-12	1.97057e-4	7.70681e-10
chr4	169498928	169499028	3087023	0	-	0.42	(0.392,0.424]	chr4	285678	190	INTRON	INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000638824.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000689190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	14	2	3.10951	3.6816150000000003	4.25372	4.28069e-4	2.90267e-5	0.0141511	0.00141183
chr12	48815728	48815828	6900933	0	+	0.69	(0.629,1]	chr12	628886	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CACNB3	ENSG00000167535.8	ENST00000547693.5:ENST00000550391.5:ENST00000540990.5:ENST00000549226.5:ENST00000548860.5:ENST00000536187.6:ENST00000548874.5:ENST00000551716.5:ENST00000550168.5:ENST00000552465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.84021	3.68145	4.52269	0.00897489	3.10525e-4	0.155806	0.0106515
chr6	143450658	143450695	4221135	0	-	0.675676	(0.629,1]	chr6	383799	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000367593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.84021	3.68145	4.52269	0.00897489	3.10525e-4	0.155806	0.0106515
chr11	122406350	122406449	6766294	0	-	0.373737	(0.36,0.392]	chr11	617637	214	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	8	23	2	3.39798	3.6810799999999997	3.96418	1.18357e-6	3.41715e-7	8.11031e-5	2.60631e-5
chr5	72196229	72196327	3210398	0	+	0.571429	(0.57,0.629]	chr5	296335	25	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.8927	3.680485	4.46827	5.2773e-4	2.63329e-4	0.0167673	0.00943086
chr10	43393929	43394029	6118001	0	-	0.41	(0.392,0.424]	chr10	547977	56	INTRON	INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	3.62464	3.6799999999999997	3.73536	1.11057e-4	3.4035e-5	0.00448562	0.0016098
chr7	80880135	80880235	4756203	0	-	0.46	(0.459,0.49]	chr7	426132	324	INTRON	INTRON	SEMA3C	ENSG00000075223.14	ENST00000265361.8:ENST00000419255.6:ENST00000458729.5:ENST00000411788.5:ENST00000427167.5:ENST00000487621.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	3.31269	3.679625	4.04656	0.00308309	3.80472e-5	0.0699986	0.00181622
chr8	130440067	130440166	5278024	0	-	0.464646	(0.459,0.49]	chr8	471519	124	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.31269	3.679625	4.04656	0.00308309	3.80472e-5	0.0699986	0.00181622
chr2	187518283	187518382	1646174	0	-	0.383838	(0.36,0.392]	chr2	169068	48	EXON_MRNA	EXON_MRNA:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000481132.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	35	2	3.4645	3.679605	3.89471	1.65159e-9	6.49018e-10	1.89876e-7	7.86781e-8
chr4	151324440	151324540	3059081	0	-	0.45	(0.424,0.459]	chr4	283919	583	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	3.47733	3.6795099999999996	3.88169	2.01844e-4	4.26366e-6	0.00755335	2.53741e-4
chr9	34397498	34397533	5608944	0	-	0.542857	(0.526,0.57]	chr9	502387	1	CDS	CDS:EXON_MRNA	C9orf24	ENSG00000164972.14	ENST00000692548.1:ENST00000297623.7:ENST00000444429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	35	2	3.4246	3.6782	3.9318	2.43323e-7	3.12159e-9	1.91066e-5	3.43891e-7
chr11	35743036	35743135	6372445	0	+	0.383838	(0.36,0.392]	chr11	571053	72	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7:ENST00000532066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	16	2	3.23982	3.676895	4.11397	2.56702e-4	2.41963e-6	0.00911512	1.5318e-4
chr16	30651731	30651795	8369846	0	+	0.625	(0.57,0.629]	chr16	781330	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000563399.5:ENST00000568754.5:ENST00000569864.5:ENST00000563211.5:ENST00000564946.5:ENST00000565410.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	45	2	3.47998	3.67678	3.87358	3.51936e-9	7.09413e-10	3.85332e-7	8.55475e-8
chr1	180949791	180949885	816278	0	-	0.542553	(0.526,0.57]	chr1	90671	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000243155:KIAA1614-AS1	ENSG00000243155.1:ENSG00000232586.1	ENST00000358073.2:ENST00000415647.1	lncRNA	lncRNA	lncRNA	lncRNA	3	18	2	3.1573	3.67631	4.19532	4.45312e-4	5.88525e-6	0.0146627	3.44579e-4
chr7	32561855	32561954	4353710	0	+	0.484848	(0.459,0.49]	chr7	393214	20	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	3.56953	3.674735	3.77994	2.14818e-4	4.08493e-5	0.00789628	0.00193677
chr15	22735142	22735240	7924211	0	+	0.459184	(0.424,0.459]	chr15	731321	6	INTRON	INTRON	PDCD6IPP1	ENSG00000275325.4	ENST00000622242.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	11	2	3.23804	3.674485	4.11093	0.00649971	5.36389e-5	0.114061	0.00243585
chr13	113233617	113233706	7453227	0	+	0.47191	(0.459,0.49]	chr13	686441	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	3.32099	3.67442	4.02785	2.2051e-4	3.61681e-9	0.00809052	3.93725e-7
chr8	22606606	22606702	4947797	0	+	0.479167	(0.459,0.49]	chr8	442924	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR2	ENSG00000158941.17	ENST00000308511.9:ENST00000523801.5:ENST00000521301.5:ENST00000389279.7:ENST00000521837.5:ENST00000523349.5:ENST00000518989.1	protein_coding	protein_coding	protein_coding	protein_coding	61	230	2	3.59379	3.67392	3.75405	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	6862392	6862491	2565765	0	+	0.333333	(0.32,0.36]	chr4	246549	16	CDS	CDS:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	4	12	2	2.96554	3.67369	4.38184	0.00254567	1.66191e-5	0.0610271	8.55383e-4
chr2	95820522	95820621	1510816	0	-	0.353535	(0.32,0.36]	chr2	156604	9	INTRON	INTRON	LINC00342	ENSG00000232931.6	ENST00000662121.1	lncRNA	lncRNA	lncRNA	lncRNA	20	46	2	3.36419	3.6736449999999996	3.9831	8.82761e-12	1.11122e-12	1.36472e-9	1.90607e-10
chr11	108247036	108247136	6486277	0	+	0.35	(0.32,0.36]	chr11	586311	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000684037.1:ENST00000682516.1:ENST00000684061.1:ENST00000684179.1:ENST00000682956.1:ENST00000683100.1:ENST00000683605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	26	2	3.25361	3.672605	4.0916	1.73961e-6	3.77233e-9	1.15465e-4	4.07347e-7
chr20	58251810	58251864	9772630	0	-	0.425926	(0.424,0.459]	chr20	968463	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	PPP4R1L	ENSG00000124224.18	ENST00000650934.1:ENST00000334187.12:ENST00000493688.5:ENST00000691176.1:ENST00000690618.1:ENST00000495058.6:ENST00000244070.7:ENST00000686997.1:ENST00000691692.1:ENST00000422302.3:ENST00000687831.1:ENST00000687668.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr3	17579422	17579521	2194951	0	-	0.434343	(0.424,0.459]	chr3	214282	25	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr3	23952140	23952240	1790692	0	+	0.44	(0.424,0.459]	chr3	183508	55	INTRON	INTRON	NR1D2	ENSG00000174738.13	ENST00000312521.9:ENST00000383773.8:ENST00000492552.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr5	126788231	126788331	3306474	0	+	0.44	(0.424,0.459]	chr5	303552	100	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr7	852667	852738	4283038	0	+	0.43662	(0.424,0.459]	chr7	388159	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000480475.5:ENST00000488628.1:ENST00000463848.1:ENST00000457861.1:ENST00000459810.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr8	55895185	55895285	4986824	0	+	0.45	(0.424,0.459]	chr8	447441	147	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr9	122157152	122157250	5722491	0	-	0.459184	(0.424,0.459]	chr9	513087	44	INTRON	INTRON	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.3314	3.6724300000000003	4.01346	0.00778514	0.00517898	0.130982	0.0992178
chr6	127475586	127475684	4187198	0	-	0.704082	(0.629,1]	chr6	381173	4	CDS	CDS:EXON_MRNA	SOGA3	ENSG00000214338.10	ENST00000525778.5:ENST00000465909.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.76554	3.672015	4.57849	0.0112307	2.2493e-4	0.181488	0.00827964
chr17	43278354	43278454	8938245	0	-	0.68	(0.629,1]	chr17	859071	482	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.15981	3.6716249999999997	4.18344	0.00188809	0.00183228	0.0469284	0.0466341
chrX	74076565	74076664	10375111	0	-	0.424242	(0.392,0.424]	chrX	1030008	66	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000652609.1:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1	lncRNA	lncRNA	lncRNA	lncRNA	14	42	2	3.49385	3.671145	3.84844	1.28225e-9	1.22091e-12	1.48616e-7	2.08866e-10
chr14	67996780	67996880	7670389	0	+	0.42	(0.392,0.424]	chr14	705758	876	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	16	2	3.07609	3.67014	4.26419	0.00280132	2.06452e-7	0.0645347	1.64563e-5
chr13	36319281	36319380	7487438	0	-	0.515152	(0.49,0.526]	chr13	689442	45	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000475603.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	9	2	3.25397	3.66945	4.08493	0.00395081	0.00365962	0.0816719	0.0766409
chr14	89402362	89402462	7888705	0	-	0.52	(0.49,0.526]	chr14	726979	8	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	3.25397	3.66945	4.08493	0.00395081	0.00365962	0.0816719	0.0766409
chr19	45388979	45389079	9511029	0	-	0.51	(0.49,0.526]	chr19	938022	24	INTRON	INTRON	PPP1R13L	ENSG00000104881.16	ENST00000418234.6:ENST00000360957.10:ENST00000587270.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	3.25397	3.66945	4.08493	0.00395081	0.00365962	0.0816719	0.0766409
chr2	96732918	96733018	1514646	0	-	0.52	(0.49,0.526]	chr2	157579	194	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.25397	3.66945	4.08493	0.00395081	0.00365962	0.0816719	0.0766409
chr1	235155212	235155312	890124	0	-	0.28	[0,0.32]	chr1	99149	1	SS3_PROX	SS3_PROX:INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5:ENST00000476261.5:ENST00000468751.5:ENST00000429912.1:ENST00000475960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.27638	3.669385	4.06239	0.0118823	3.10398e-4	0.184357	0.0109114
chr6	78896329	78896429	3821681	0	+	0.28	[0,0.32]	chr6	350251	105	INTRON	INTRON	IRAK1BP1	ENSG00000146243.14	ENST00000369940.7:ENST00000606868.5:ENST00000607739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	8	2	3.27638	3.669385	4.06239	0.0118823	3.10398e-4	0.184357	0.0109114
chr22	17524187	17524257	9893176	0	+	0.514286	(0.49,0.526]	chr22	981810	2	CDS	CDS:EXON_MRNA	CECR2	ENSG00000099954.19	ENST00000400585.7:ENST00000262608.13:ENST00000342247.10:ENST00000612582.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	3.07223	3.66927	4.26631	9.76018e-4	2.32598e-6	0.0274227	1.50793e-4
chrX	81282607	81282707	10171011	0	+	0.36	(0.32,0.36]	chrX	1013480	38	INTRON	INTRON	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	23	2	3.37391	3.66804	3.96217	7.83717e-7	3.46128e-7	5.54877e-5	2.6576e-5
chr12	25227325	25227412	7121315	0	-	0.448276	(0.424,0.459]	chr12	653923	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000688228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	111	2	3.30125	3.6678050000000004	4.03436	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	5531682	5531782	3697126	0	+	0.5	(0.49,0.526]	chr6	336658	1000	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	3.61409	3.6673400000000003	3.72059	2.73826e-4	1.16311e-5	0.00975361	6.41146e-4
chr1	37909145	37909245	575272	0	-	0.45	(0.424,0.459]	chr1	64883	173	INTRON	INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr1	116053370	116053470	268894	0	+	0.43	(0.424,0.459]	chr1	27645	156	INTRON	INTRON	SLC22A15	ENSG00000163393.13	ENST00000369503.9	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr10	116935183	116935283	6266280	0	-	0.44	(0.424,0.459]	chr10	560709	48	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr13	113052753	113052848	7452159	0	+	0.442105	(0.424,0.459]	chr13	686185	1	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr14	64456617	64456717	7850851	0	-	0.43	(0.424,0.459]	chr14	722711	66	INTRON	INTRON	ZBTB25	ENSG00000089775.12	ENST00000555220.5:ENST00000555424.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr15	50330519	50330618	8164433	0	-	0.454545	(0.424,0.459]	chr15	756951	33	INTRON	INTRON	GABPB1	ENSG00000104064.18	ENST00000380877.8:ENST00000220429.12:ENST00000543881.5:ENST00000396464.7:ENST00000429662.6:ENST00000359031.8:ENST00000560825.5:ENST00000558970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr17	64498449	64498547	8985419	0	-	0.428571	(0.424,0.459]	chr17	866043	3	UTR3	UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr3	108084115	108084214	2378883	0	-	0.434343	(0.424,0.459]	chr3	228763	34	INTRON	INTRON	CD47	ENSG00000196776.17	ENST00000361309.6:ENST00000355354.13:ENST00000644850.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr5	55379495	55379595	3176856	0	+	0.45	(0.424,0.459]	chr5	293449	3	SS5_PROX	SS5_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr5	81737321	81737421	3527496	0	-	0.44	(0.424,0.459]	chr5	322143	262	INTRON	INTRON	SSBP2	ENSG00000145687.17	ENST00000320672.9:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000505980.5:ENST00000515395.5:ENST00000507655.5:ENST00000507472.5:ENST00000509013.2:ENST00000504174.5:ENST00000512098.5:ENST00000506960.5:ENST00000508912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr6	24686904	24687004	3743705	0	+	0.45	(0.424,0.459]	chr6	339169	1	SS3_PROX	SS3_PROX:INTRON	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr7	69634614	69634714	4407057	0	+	0.44	(0.424,0.459]	chr7	396944	343	INTRON	INTRON	AUTS2	ENSG00000158321.18	ENST00000644939.1:ENST00000342771.10:ENST00000406775.6:ENST00000403018.3:ENST00000643936.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr7	98196751	98196850	4484598	0	+	0.454545	(0.424,0.459]	chr7	402661	18	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chr9	7001410	7001509	5332773	0	+	0.434343	(0.424,0.459]	chr9	477229	105	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.23804	3.66615	4.09426	0.00651192	0.00649971	0.116758	0.114061
chrX	73829156	73829245	10373499	0	-	0.404494	(0.392,0.424]	chrX	1029947	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1	lncRNA	lncRNA	lncRNA	lncRNA	27	76	2	3.5147	3.663025	3.81135	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	66652971	66653071	6421765	0	+	0.5	(0.49,0.526]	chr11	578758	7	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.41836	3.66283	3.9073	0.00136895	7.31994e-5	0.0359623	0.00316256
chr18	70301857	70301956	9148041	0	+	0.50505	(0.49,0.526]	chr18	881894	48	INTRON	INTRON	SOCS6	ENSG00000170677.6	ENST00000397942.4:ENST00000578377.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.16684	3.6619900000000003	4.15714	0.00470616	0.00319561	0.0901733	0.0699484
chr6	35868111	35868210	4047296	0	-	0.494949	(0.49,0.526]	chr6	368881	104	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000507292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.16684	3.6619900000000003	4.15714	0.00470616	0.00319561	0.0901733	0.0699484
chr7	7738800	7738891	4305450	0	+	0.494505	(0.49,0.526]	chr7	390269	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.16684	3.6619900000000003	4.15714	0.00470616	0.00319561	0.0901733	0.0699484
chr21	33514912	33515010	9859962	0	-	0.489796	(0.459,0.49]	chr21	978879	31	INTRON	INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	2.55849	3.66175	4.76501	0.00493064	1.46149e-4	0.0964485	0.00564049
chr2	100566502	100566565	1103292	0	+	0.492063	(0.49,0.526]	chr2	118297	1	CDS	CDS:UTR5:EXON_MRNA	PDCL3	ENSG00000115539.14	ENST00000264254.11:ENST00000416255.5	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	3.61409	3.66054	3.70699	1.16311e-5	6.7032e-6	6.41146e-4	3.89775e-4
chr1	634029	634128	44	0	+	0.424242	(0.392,0.424]	chr1	5	6	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	28	76	2	3.26432	3.66017	4.05602	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	239912934	239912990	1733361	0	-	0.535714	(0.526,0.57]	chr2	178033	1	CDS	CDS:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	3.62355	3.659395	3.69524	4.05302e-4	3.03531e-4	0.0135138	0.0107298
chr1	211954891	211954990	852522	0	-	0.343434	(0.32,0.36]	chr1	94950	18	INTRON	INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	21	2	2.91786	3.657425	4.39699	3.31051e-5	8.67854e-8	0.00159339	7.51259e-6
chr2	235812526	235812626	1349351	0	+	0.51	(0.49,0.526]	chr2	139262	48	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	3.26127	3.657115	4.05296	2.44493e-5	8.11406e-8	0.00121977	7.06304e-6
chr12	42417155	42417255	6881883	0	+	0.38	(0.36,0.392]	chr12	627985	168	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000317560.13:ENST00000432191.6	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	3.51195	3.65686	3.80177	2.72313e-7	6.65583e-9	2.13145e-5	6.99012e-7
chr8	47947225	47947325	5166167	0	-	0.52	(0.49,0.526]	chr8	463133	28	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.9887	3.65646	4.32422	4.12431e-6	2.73466e-9	2.47672e-4	3.02192e-7
chr10	80412922	80413022	5918643	0	+	0.49	(0.459,0.49]	chr10	530548	39	INTRON	INTRON	PRXL2A	ENSG00000122378.14	ENST00000372188.5:ENST00000615554.4:ENST00000372185.5:ENST00000606162.6	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	3.53295	3.6564449999999997	3.77994	2.14818e-4	2.82514e-6	0.00789628	1.75466e-4
chr5	10385307	10385406	3120176	0	+	0.292929	[0,0.32]	chr5	288999	30	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	25	2	3.57445	3.6554349999999998	3.73642	3.24741e-6	5.05321e-9	2.02601e-4	5.38161e-7
chr18	266030	266125	9163310	0	-	0.494737	(0.49,0.526]	chr18	883029	1	INTRON	INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1:ENST00000578224.5:ENST00000580870.5:ENST00000580544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	51	2	3.33369	3.6552499999999997	3.97681	5.54642e-9	1e-12	5.85557e-7	1.73382e-10
chr22	26560994	26561088	9916794	0	+	0.414894	(0.392,0.424]	chr22	985004	6	EXON_PSEUDO	EXON_PSEUDO	HMGB1P10	ENSG00000213707.2	ENST00000395823.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	15	2	3.3308	3.655185	3.97957	6.63878e-4	4.95123e-6	0.0199616	2.96695e-4
chr5	177433346	177433410	3401980	0	+	0.5625	(0.526,0.57]	chr5	312331	1	CDS	CDS:EXON_MRNA	GRK6	ENSG00000198055.11	ENST00000506296.5:ENST00000355472.10:ENST00000507633.5:ENST00000393576.7:ENST00000528793.5:ENST00000355958.9:ENST00000515666.5:ENST00000508705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	3.23242	3.6550450000000003	4.07767	0.00403601	3.23436e-4	0.0817225	0.0113067
chr19	54456324	54456394	9386735	0	+	0.614286	(0.57,0.629]	chr19	915833	1	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	3.55213	3.654775	3.75742	1.63326e-10	1.10377e-11	2.13719e-8	1.69538e-9
chr3	142479654	142479754	2459077	0	-	0.39	(0.36,0.392]	chr3	236115	91	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000513291.2:ENST00000654170.1:ENST00000666943.1:ENST00000666447.1:ENST00000665483.1:ENST00000661310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	48	2	3.45521	3.65444	3.85367	9.13025e-10	1e-12	1.08176e-7	1.72912e-10
chr4	182243476	182243576	2796512	0	+	0.47	(0.459,0.49]	chr4	264796	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TENM3	ENSG00000218336.9	ENST00000513201.1:ENST00000512480.5:ENST00000511685.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	47	2	3.04413	3.65378	4.26343	3.25474e-8	1e-12	3.0305e-6	1.73382e-10
chr14	68367445	68367545	7674098	0	+	0.35	(0.32,0.36]	chr14	705774	751	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chr17	45554231	45554331	8947372	0	-	0.35	(0.32,0.36]	chr17	860774	28	INTRON	INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000686949.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chr22	39319594	39319597	10039667	0	-	0.333333	(0.32,0.36]	chr22	1001038	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000465618.5:ENST00000402527.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000461967.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chr6	34376165	34376265	4043335	0	-	0.34	(0.32,0.36]	chr6	368513	338	INTRON	INTRON	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chr6	56534821	56534921	4091173	0	-	0.33	(0.32,0.36]	chr6	372791	3	SS5_PROX	SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chrX	102904761	102904861	10189632	0	+	0.35	(0.32,0.36]	chrX	1014636	26	INTRON	INTRON	ENSG00000239407	ENSG00000239407.5	ENST00000426528.5:ENST00000429932.1	lncRNA	lncRNA	lncRNA	lncRNA	2	8	2	3.59803	3.6537699999999997	3.70951	0.00267453	0.00201951	0.0637459	0.0510613
chr1	120789097	120789196	278353	0	+	0.555556	(0.526,0.57]	chr1	28693	35	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr11	16818421	16818521	6573303	0	-	0.54	(0.526,0.57]	chr11	597560	7	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000637162.1:ENST00000355661.7:ENST00000696749.1:ENST00000530489.5:ENST00000532079.1	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr12	120903370	120903439	7302407	0	-	0.550725	(0.526,0.57]	chr12	673997	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5	protein_coding	protein_coding	protein_coding	protein_coding	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr16	22308395	22308481	8348972	0	+	0.569767	(0.526,0.57]	chr16	778365	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000565358.5:ENST00000418581.6:ENST00000564883.5:ENST00000359210.8:ENST00000563024.5:ENST00000561494.5:ENST00000564061.5:ENST00000563766.5:ENST00000567022.5:ENST00000564750.5:ENST00000564256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr22	41213058	41213155	9952006	0	+	0.56701	(0.526,0.57]	chr22	990035	28	INTRON	INTRON	L3MBTL2	ENSG00000100395.15	ENST00000481902.5:ENST00000489136.5:ENST00000466589.5:ENST00000216237.10:ENST00000479978.5:ENST00000452106.5:ENST00000450939.1:ENST00000449635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr8	129944468	129944568	5273360	0	-	0.53	(0.526,0.57]	chr8	471281	47	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000519142.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000517672.5:ENST00000522361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	9	2	3.22891	3.65329	4.07767	0.00403601	0.00393565	0.0817225	0.0798064
chr3	136735006	136735106	2448564	0	-	0.47	(0.459,0.49]	chr3	234921	1037	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	3.32713	3.65157	3.97601	1.35758e-6	7.08572e-7	9.23483e-5	5.07254e-5
chr19	8471325	8471376	9279372	0	+	0.568627	(0.526,0.57]	chr19	896040	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000601645.5:ENST00000598367.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	44	2	3.29717	3.651015	4.00486	9.12091e-10	7.30016e-10	1.08109e-7	8.72952e-8
chr2	210653036	210653136	1296897	0	+	0.44	(0.424,0.459]	chr2	134221	22	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	133	398	2	3.46978	3.650695	3.83161	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	633930	634029	43	0	+	0.525253	(0.49,0.526]	chr1	5	5	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	11	46	2	3.15053	3.650475	4.1504200000000004	1.61153e-9	6.85753e-11	1.85469e-7	9.44151e-9
chrM	2535	2631	10480407	0	+	0.520833	(0.49,0.526]	chrM	1038987	10	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	437	1778	2	3.52235	3.64912	3.77589	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	35502776	35502873	9636904	0	+	0.515464	(0.49,0.526]	chr20	951523	5	CDS	CDS:UTR3:EXON_MRNA	CEP250	ENSG00000126001.16	ENST00000397527.6:ENST00000425525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	46	2	3.0521	3.64902	4.24594	5.00108e-9	2.2777e-11	5.35706e-7	3.33003e-9
chr2	240497557	240497657	1734821	0	-	0.43	(0.424,0.459]	chr2	178219	149	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000407275.2	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	1.72286	3.648525	5.57419	0.0108763	1e-12	0.177281	1.73382e-10
chr1	107870717	107870817	717271	0	-	0.46	(0.459,0.49]	chr1	76660	76	INTRON	INTRON	VAV3	ENSG00000134215.16	ENST00000370056.9:ENST00000527011.5:ENST00000469325.5:ENST00000490388.2:ENST00000530671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	3.40387	3.64819	3.89251	1.53229e-4	1.23517e-6	0.00595859	8.43676e-5
chr17	29714559	29714659	8904102	0	-	0.35	(0.32,0.36]	chr17	853473	111	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	8	2	2.96554	3.6475299999999997	4.32952	0.00388505	0.00254567	0.0816719	0.0610271
chr19	35006920	35007020	9329707	0	+	0.57	(0.526,0.57]	chr19	904634	37	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	9	2	3.15803	3.647145	4.13626	0.00482649	0.00339748	0.0920354	0.0728314
chr19	10499586	10499672	9434637	0	-	0.581395	(0.57,0.629]	chr19	925247	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KEAP1	ENSG00000079999.14	ENST00000171111.10:ENST00000393623.6:ENST00000585845.1:ENST00000592055.2:ENST00000591419.2:ENST00000591039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1153	5533	2	3.59986	3.6469500000000004	3.69404	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	50733366	50733466	612283	0	-	0.41	(0.392,0.424]	chr1	68258	271	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	8	2	3.07609	3.64675	4.21741	0.00496616	0.00280132	0.0964485	0.0645347
chr1	201151160	201151260	833879	0	-	0.42	(0.392,0.424]	chr1	92568	39	INTRON	INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.07609	3.64675	4.21741	0.00496616	0.00280132	0.0964485	0.0645347
chr2	235974920	235975020	1350980	0	+	0.41	(0.392,0.424]	chr2	139292	59	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	8	2	3.07609	3.64675	4.21741	0.00496616	0.00280132	0.0964485	0.0645347
chr13	26284067	26284167	7336656	0	+	0.34	(0.32,0.36]	chr13	678267	289	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	25	2	2.27383	3.645835	5.01784	0.00148419	3.22675e-12	0.0389684	5.24685e-10
chr12	6341375	6341475	7076153	0	-	0.56	(0.526,0.57]	chr12	649588	2	SS5_PROX	SS5_PROX:INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	3.40949	3.64568	3.88187	0.00141136	8.23795e-5	0.0368074	0.00351856
chr17	36505604	36505704	8915944	0	-	0.54	(0.526,0.57]	chr17	854785	2	SS3_PROX	SS3_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000611794.1:ENST00000614416.4:ENST00000611125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	3.40949	3.64568	3.88187	0.00141136	8.23795e-5	0.0368074	0.00351856
chr6	161090878	161090978	3967879	0	+	0.53	(0.526,0.57]	chr6	360294	1	SS3_PROX	SS3_PROX:INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	3.48083	3.645375	3.80992	0.00110295	1.14789e-4	0.0304129	0.00467969
chr11	65552590	65552674	6625178	0	-	0.464286	(0.459,0.49]	chr11	605860	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP3	ENSG00000168056.18	ENST00000530866.6:ENST00000301873.11:ENST00000526825.6:ENST00000689505.1:ENST00000322147.8:ENST00000528516.5:ENST00000526927.6:ENST00000527792.5:ENST00000524798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.08436	3.64535	4.20634	0.00939464	0.00276656	0.161654	0.0641652
chr15	62608454	62608554	7998102	0	+	0.48	(0.459,0.49]	chr15	739277	183	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000636159.2:ENST00000561197.5:ENST00000561311.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.08436	3.64535	4.20634	0.00939464	0.00276656	0.161654	0.0641652
chr16	57663451	57663482	8401208	0	+	0.483871	(0.459,0.49]	chr16	785752	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADGRG1	ENSG00000205336.14	ENST00000564907.5:ENST00000568908.5:ENST00000568909.5:ENST00000567835.5:ENST00000456916.5:ENST00000388813.9:ENST00000562558.6:ENST00000673126.2:ENST00000562631.7:ENST00000672974.1:ENST00000565976.6:ENST00000565539.5:ENST00000540164.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.08436	3.64535	4.20634	0.00939464	0.00276656	0.161654	0.0641652
chr2	74154300	74154399	1494748	0	-	0.474747	(0.459,0.49]	chr2	154349	19	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.08436	3.64535	4.20634	0.00939464	0.00276656	0.161654	0.0641652
chr3	52600726	52600825	2284425	0	-	0.484848	(0.459,0.49]	chr3	223090	111	INTRON	INTRON	PBRM1	ENSG00000163939.18	ENST00000356770.8:ENST00000394830.7:ENST00000337303.8:ENST00000412587.5:ENST00000296302.11:ENST00000409057.5:ENST00000410007.5:ENST00000409114.7:ENST00000409767.5:ENST00000423351.5:ENST00000462207.1:ENST00000446103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	8	2	3.08436	3.64535	4.20634	0.00939464	0.00276656	0.161654	0.0641652
chr21	16228660	16228760	9787172	0	+	0.43	(0.424,0.459]	chr21	970574	47	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000653669.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000663510.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000658075.1:ENST00000669537.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1	lncRNA	lncRNA	lncRNA	lncRNA	13	43	2	3.45993	3.64376	3.82759	5.43418e-10	1.29384e-11	6.63622e-8	1.96019e-9
chr3	121729243	121729300	2405099	0	-	0.298246	[0,0.32]	chr3	230533	2	CDS	CDS:UTR3:EXON_MRNA	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000393667.8:ENST00000694957.1:ENST00000695107.1:ENST00000482512.6:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695040.1:ENST00000695010.1:ENST00000694975.1:ENST00000695011.1:ENST00000695020.1:ENST00000694984.1:ENST00000694985.1:ENST00000695022.1:ENST00000695110.1:ENST00000694959.1:ENST00000472829.2:ENST00000694960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	42	2	3.6323	3.641705	3.65111	2.84368e-9	1e-12	3.13486e-7	1.73382e-10
chr1	1270524	1270621	491866	0	-	0.474227	(0.459,0.49]	chr1	52200	22	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	3.00155	3.641145	4.28074	0.00201907	3.57604e-6	0.0510613	2.18487e-4
chrX	9637051	9637147	10079137	0	+	0.447917	(0.424,0.459]	chrX	1005257	9	UTR5	UTR5:EXON_MRNA:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	10	2	2.56804	3.64114	4.71424	0.00769936	3.07139e-4	0.135524	0.0105767
chr16	2759568	2759661	8304840	0	+	0.612903	(0.57,0.629]	chr16	773125	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000575870.5:ENST00000573451.5:ENST00000570655.1:ENST00000573498.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	341	1640	2	3.47712	3.64102	3.80492	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	46382377	46382461	6390506	0	+	0.666667	(0.629,1]	chr11	572556	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDK	ENSG00000110492.17	ENST00000405308.6:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	3.39846	3.64013	3.8818	0.0064023	5.39652e-4	0.114061	0.0171646
chr5	176368894	176368982	3397875	0	+	0.659091	(0.629,1]	chr5	311754	2	CDS	CDS:EXON_MRNA	ARL10	ENSG00000175414.7	ENST00000310389.6:ENST00000507151.1:ENST00000514533.1:ENST00000503175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	3.39846	3.64013	3.8818	0.0064023	5.39652e-4	0.114061	0.0171646
chr19	2128989	2129089	9405667	0	-	0.79	(0.629,1]	chr19	919652	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	3.60202	3.640075	3.67813	1.20607e-4	7.89766e-5	0.00489816	0.00339213
chr1	226996476	226996576	873948	0	-	0.49	(0.459,0.49]	chr1	97385	11	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000448940.5:ENST00000442054.5:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.91928	3.64004	4.3608	0.00264065	2.23014e-6	0.063308	1.43671e-4
chr1	52077382	52077481	145204	0	+	0.474747	(0.459,0.49]	chr1	17795	57	INTRON	INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr1	179133556	179133648	812499	0	-	0.478261	(0.459,0.49]	chr1	90518	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000344730.7:ENST00000512653.5:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000504405.5:ENST00000668691.1:ENST00000392043.4:ENST00000509520.5:ENST00000504324.1:ENST00000660584.1:ENST00000659126.1:ENST00000508127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr15	92799388	92799487	8276158	0	-	0.474747	(0.459,0.49]	chr15	768887	109	INTRON	INTRON	FAM174B	ENSG00000185442.13	ENST00000557398.2:ENST00000555971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr17	79993595	79993634	9026807	0	-	0.461538	(0.459,0.49]	chr17	871641	1	UTR5	UTR5:EXON_MRNA:INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000571872.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr2	111814869	111814969	1548153	0	-	0.49	(0.459,0.49]	chr2	160351	1	SS5_PROX	SS5_PROX:INTRON	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8:ENST00000485325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr7	72896499	72896599	4424782	0	+	0.48	(0.459,0.49]	chr7	397244	50	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr7	117155095	117155195	4525031	0	+	0.48	(0.459,0.49]	chr7	407379	162	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr9	91229684	91229783	5654222	0	-	0.484848	(0.459,0.49]	chr9	506358	83	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chrX	9476526	9476626	10077525	0	+	0.46	(0.459,0.49]	chrX	1005229	107	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chrX	37399435	37399535	10110328	0	+	0.48	(0.459,0.49]	chrX	1007942	124	INTRON	INTRON	PRRG1	ENSG00000130962.18	ENST00000491253.1:ENST00000542554.5:ENST00000543642.5:ENST00000466533.5:ENST00000378628.9:ENST00000484460.5:ENST00000449135.6:ENST00000463135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.00648	3.63966	4.27284	0.0112903	0.00227779	0.181488	0.0552099
chr5	179713425	179713523	3406913	0	+	0.367347	(0.36,0.392]	chr5	313034	30	INTRON	INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	11	2	3.52068	3.63956	3.75844	0.00324516	6.393e-5	0.0730386	0.00282504
chrX	1420096	1420192	10249737	0	-	0.53125	(0.526,0.57]	chrX	1021433	6	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	3.33292	3.6392949999999997	3.94567	8.03526e-7	3.05141e-7	5.68401e-5	2.36544e-5
chr11	120452224	120452323	6513703	0	+	0.414141	(0.392,0.424]	chr11	590004	1	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000532823.5:ENST00000525222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	17	2	3.29765	3.63861	3.97957	1.04913e-4	4.95123e-6	0.00432856	2.96695e-4
chr12	20640753	20640852	6844784	0	+	0.313131	[0,0.32]	chr12	625101	4	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	12	2	3.4411	3.638475	3.83585	9.57415e-4	4.6269e-5	0.0269423	0.00212902
chr5	34773283	34773382	3145078	0	+	0.363636	(0.36,0.392]	chr5	290393	153	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000514527.5:ENST00000510319.5:ENST00000513974.5:ENST00000512629.5:ENST00000428746.6:ENST00000514873.5:ENST00000508777.5:ENST00000503673.5:ENST00000504052.5:ENST00000512305.5:ENST00000514036.5:ENST00000515799.5:ENST00000508315.5:ENST00000515448.5:ENST00000503222.5:ENST00000512625.5:ENST00000506376.1:ENST00000507502.5:ENST00000502736.5:ENST00000507276.5:ENST00000509247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	11	2	3.59992	3.637815	3.67571	0.00266188	9.00428e-5	0.0631592	0.00381913
chr2	99170536	99170594	1522835	0	-	0.413793	(0.392,0.424]	chr2	158587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MITD1	ENSG00000158411.11	ENST00000487588.5:ENST00000422537.6:ENST00000289359.6:ENST00000413710.2:ENST00000464685.1:ENST00000483721.1:ENST00000409107.1:ENST00000466880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	25	2	3.00598	3.637575	4.26917	4.28333e-5	1.59208e-9	0.0019752	1.83363e-7
chr1	92275835	92275934	689992	0	-	0.444444	(0.424,0.459]	chr1	74988	38	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000463560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.26116	3.6373100000000003	4.01346	0.00778514	8.43922e-4	0.130982	0.0240064
chr16	88521820	88521920	8619592	0	-	0.62	(0.57,0.629]	chr16	813003	4	SS5_PROX	SS5_PROX:INTRON	ZFPM1-AS1	ENSG00000261744.1	ENST00000563243.1	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	3.50295	3.6367	3.77045	6.5426e-4	9.07674e-5	0.0199608	0.00383949
chr22	31879752	31879849	9935396	0	+	0.57732000000000006	(0.57,0.629]	chr22	987098	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DEPDC5	ENSG00000100150.20	ENST00000535622.6:ENST00000645711.1:ENST00000644331.1:ENST00000645560.1:ENST00000433147.2:ENST00000645755.1:ENST00000400246.7:ENST00000644162.1:ENST00000382112.8:ENST00000400248.7:ENST00000642771.1:ENST00000646515.1:ENST00000643751.2:ENST00000646969.1:ENST00000642696.1:ENST00000647343.1:ENST00000642684.1:ENST00000651528.2:ENST00000646998.1:ENST00000645494.1:ENST00000646465.1:ENST00000643395.1:ENST00000400249.7:ENST00000382111.6:ENST00000645407.1:ENST00000645893.1:ENST00000448753.6:ENST00000646135.1:ENST00000643097.1:ENST00000646830.1:ENST00000644690.1:ENST00000643021.1:ENST00000642956.1:ENST00000645547.1:ENST00000479261.2:ENST00000646383.1:ENST00000642212.1:ENST00000642915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	3.50295	3.6367	3.77045	6.5426e-4	9.07674e-5	0.0199608	0.00383949
chr3	158786164	158786264	2059145	0	+	0.35	(0.32,0.36]	chr3	205174	22	INTRON	INTRON	MFSD1	ENSG00000118855.21	ENST00000486568.5:ENST00000491804.1:ENST00000465739.5	protein_coding	protein_coding	protein_coding	protein_coding	43	99	2	3.61563	3.63666	3.65769	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	67082148	67082212	8407644	0	+	0.203125	[0,0.32]	chr16	786814	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000566281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	67	2	3.58281	3.6356599999999997	3.68851	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	27621039	27621139	7339462	0	+	0.7	(0.629,1]	chr13	678514	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR1D	ENSG00000186184.20	ENST00000626929.1:ENST00000627604.1:ENST00000626064.1:ENST00000637180.1:ENST00000621089.2:ENST00000693488.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.1836700000000002	3.635125	5.08658	0.00283208	5.52146e-6	0.0662445	3.23814e-4
chrX	134460535	134460635	10228279	0	+	0.62	(0.57,0.629]	chrX	1018490	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	2.40221	3.6345650000000003	4.86692	0.00185505	4.28317e-5	0.0474587	0.0019752
chr17	82526397	82526496	8823420	0	+	0.494949	(0.49,0.526]	chr17	841827	57	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	2.62651	3.63389	4.64127	0.00258005	2.4929e-4	0.0617778	0.0089494
chr16	83939452	83939552	8467348	0	+	0.52	(0.49,0.526]	chr16	791614	54	INTRON	INTRON	MLYCD:OSGIN1	ENSG00000103150.7:ENSG00000140961.14	ENST00000561562.5:ENST00000566309.2:ENST00000563312.5:ENST00000566667.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	13	2	2.41199	3.633685	4.85538	0.00770591	6.26806e-5	0.135524	0.00277665
chr11	68470808	68470908	6428592	0	+	0.48	(0.459,0.49]	chr11	579976	96	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	27	2	3.32488	3.6332050000000002	3.94153	1.69572e-5	1.39656e-8	8.71289e-4	1.38361e-6
chr20	38433916	38434000	9742904	0	-	0.547619	(0.526,0.57]	chr20	965235	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000666419.1:ENST00000413755.5:ENST00000424235.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	17	75	2	3.42181	3.6324199999999998	3.84303	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	50205031	50205129	9976264	0	+	0.530612	(0.526,0.57]	chr22	992616	31	INTRON	INTRON	SELENOO	ENSG00000073169.15	ENST00000380903.7	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	3.25461	3.63204	4.00947	1.45132e-6	1.44053e-9	9.84773e-5	1.67467e-7
chr16	14223283	14223383	8329205	0	+	0.37	(0.36,0.392]	chr16	775603	39	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574045.5:ENST00000318282.9:ENST00000572567.5:ENST00000573051.1	protein_coding	protein_coding	protein_coding	protein_coding	5	14	2	2.68866	3.6305500000000004	4.57244	0.00234853	2.92322e-6	0.0566232	1.80583e-4
chr20	35546345	35546440	9637132	0	+	0.421053	(0.392,0.424]	chr20	951573	11	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000416206.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	3.2779	3.628735	3.97957	1.70556e-5	4.95123e-6	8.75434e-4	2.96695e-4
chr11	62543965	62544065	6615445	0	-	0.62	(0.57,0.629]	chr11	603506	70	INTRON	INTRON	AHNAK	ENSG00000124942.14	ENST00000257247.11:ENST00000533365.5:ENST00000378024.9:ENST00000530285.5:ENST00000528508.5:ENST00000531324.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.03884	3.628525	4.21821	0.00676458	0.00185391	0.1204	0.0459841
chr8	233049	233118	4914187	0	+	0.57971	(0.57,0.629]	chr8	439215	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF596	ENSG00000172748.14	ENST00000320552.6:ENST00000521145.5:ENST00000523418.5:ENST00000308811.8:ENST00000640035.1:ENST00000523162.5:ENST00000522866.5:ENST00000518414.5:ENST00000521270.5:ENST00000398612.3:ENST00000518320.6:ENST00000521238.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	3.03884	3.628525	4.21821	0.00676458	0.00185391	0.1204	0.0459841
chr1	220812327	220812427	436113	0	+	0.4	(0.392,0.424]	chr1	46942	1	SS5_PROX	SS5_PROX:INTRON	MTARC1	ENSG00000186205.14	ENST00000694918.1:ENST00000366910.10:ENST00000694919.1:ENST00000694922.1:ENST00000694923.1:ENST00000407981.6:ENST00000496110.1:ENST00000694924.1:ENST00000694926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	59	2	2.86434	3.628305	4.39227	4.55487e-11	1e-12	6.37818e-9	1.73382e-10
chr4	165967598	165967698	2783591	0	+	0.43	(0.424,0.459]	chr4	263901	473	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	2.95561	3.62725	4.29889	1.5695e-4	1.12945e-5	0.00600355	6.02727e-4
chr11	12926533	12926631	6327437	0	+	0.357143	(0.32,0.36]	chr11	567919	11	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.59803	3.6265650000000003	3.6551	0.00267453	2.11023e-4	0.0637459	0.00785
chr20	35640179	35640279	9735195	0	-	0.33	(0.32,0.36]	chr20	964032	69	INTRON	INTRON	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	10	2	3.59803	3.6265650000000003	3.6551	0.00267453	2.11023e-4	0.0637459	0.00785
chr15	34362258	34362321	8125759	0	-	0.555556	(0.526,0.57]	chr15	751691	2	CDS	CDS:EXON_MRNA	LPCAT4	ENSG00000176454.15	ENST00000314891.11:ENST00000563748.5:ENST00000567507.1:ENST00000563240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	3.12998	3.6265	4.12302	8.93019e-6	8.44142e-6	4.98528e-4	4.72082e-4
chr5	93708740	93708840	3539998	0	-	0.33	(0.32,0.36]	chr5	322880	252	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	3.08717	3.62594	4.16471	0.00535148	9.22891e-5	0.100211	0.00388567
chr15	71268012	71268112	8028299	0	+	0.4	(0.392,0.424]	chr15	742025	109	INTRON	INTRON	THSD4	ENSG00000187720.15	ENST00000355327.7:ENST00000261862.8	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	2.63838	3.625655	4.61293	0.00636373	8.49057e-4	0.114061	0.0240064
chr17	47572673	47572772	8733735	0	+	0.363636	(0.36,0.392]	chr17	829906	28	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5:ENST00000527824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	10	2	2.98999	3.62531	4.26063	0.00451705	4.36075e-4	0.0875511	0.014643
chr20	34370668	34370768	9632315	0	+	0.32	[0,0.32]	chr20	950718	8	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000486883.5:ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000658310.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000665428.1:ENST00000654846.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	11	2	3.00824	3.6249949999999997	4.24175	0.00225126	6.90565e-5	0.0552099	0.00300464
chr19	57826118	57826218	9395725	0	+	0.33	(0.32,0.36]	chr19	917451	52	INTRON	INTRON	ZNF587B	ENSG00000269343.9	ENST00000651253.2:ENST00000594328.1	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.53935	3.6244300000000003	3.70951	0.00201951	3.19299e-4	0.0510613	0.010926
chr4	41497996	41498095	2611667	0	+	0.50505	(0.49,0.526]	chr4	250084	30	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	3.41836	3.6241649999999996	3.82997	0.00136895	1.86335e-6	0.0359623	1.21822e-4
chr1	107579865	107579964	714325	0	-	0.494949	(0.49,0.526]	chr1	76479	30	INTRON	INTRON	VAV3	ENSG00000134215.16	ENST00000370056.9:ENST00000527011.5:ENST00000529413.5:ENST00000525460.5:ENST00000415432.6:ENST00000343258.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	13	2	2.53273	3.6238099999999998	4.71489	0.00358171	1.81396e-4	0.0782109	0.0069054
chr5	284122	284222	3107089	0	+	0.52	(0.49,0.526]	chr5	287746	73	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	2.85771	3.62373	4.38975	0.00321931	9.92102e-4	0.0703477	0.0276375
chr22	31333500	31333600	10014853	0	-	0.42	(0.392,0.424]	chr22	997958	42	INTRON	INTRON	PATZ1	ENSG00000100105.18	ENST00000266269.10:ENST00000405309.7:ENST00000351933.8	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.63838	3.6235150000000003	4.60865	0.00636373	1.06475e-6	0.114061	7.43219e-5
chr3	142421475	142421543	2458475	0	-	0.352941	(0.32,0.36]	chr3	236015	1	CDS	CDS:UTR3:EXON_MRNA	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000472697.5:ENST00000463916.5:ENST00000486211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	15	2	2.24435	3.622495	5.00064	0.0121019	4.42887e-8	0.185048	3.9809e-6
chr1	204493659	204493757	843121	0	-	0.561224	(0.526,0.57]	chr1	93796	34	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000684373.1:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	2.61109	3.62248	4.63387	7.5896e-4	2.57391e-4	0.0225125	0.00911512
chr1	28642554	28642654	555995	0	-	0.56	(0.526,0.57]	chr1	61749	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TAF12	ENSG00000120656.14	ENST00000685589.1:ENST00000693642.1:ENST00000688108.1:ENST00000692098.1:ENST00000691563.1:ENST00000471683.6:ENST00000495422.2:ENST00000373824.9:ENST00000685312.1:ENST00000690860.1:ENST00000691050.1:ENST00000689843.1:ENST00000263974.4:ENST00000693729.1:ENST00000690492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	3.393	3.622065	3.85113	4.3065e-6	1.80251e-8	2.56035e-4	1.76838e-6
chr1	183476991	183477091	375217	0	+	0.33	(0.32,0.36]	chr1	40733	27	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	41	2	3.33328	3.621485	3.90969	4.7504e-11	4.23449e-11	6.64909e-9	5.9905e-9
chr1	174404244	174404344	352486	0	+	0.44	(0.424,0.459]	chr1	38884	97	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	3.03857	3.62109	4.20361	5.63002e-4	1.79381e-5	0.0178211	9.13813e-4
chr22	46598787	46598887	9966051	0	+	0.61	(0.57,0.629]	chr22	992036	211	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.95732	3.6207700000000003	4.28422	0.00848479	0.00145677	0.140721	0.0382827
chr5	33450970	33451066	3143689	0	+	0.572917	(0.57,0.629]	chr5	290225	19	INTRON	INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000514259.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5:ENST00000513066.3:ENST00000627006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.95732	3.6207700000000003	4.28422	0.00848479	0.00145677	0.140721	0.0382827
chr1	151574269	151574333	298343	0	+	0.546875	(0.526,0.57]	chr1	31989	1	CDS	CDS:EXON_MRNA	TUFT1	ENSG00000143367.17	ENST00000392712.7:ENST00000368848.6:ENST00000368849.8:ENST00000490156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	82	2	3.43974	3.620495	3.80125	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	31475311	31475411	5828999	0	+	0.36	(0.32,0.36]	chr10	523997	137	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	16	2	3.29536	3.62026	3.94516	6.04067e-5	1.2683e-5	0.00268261	6.82846e-4
chr15	22509408	22509507	7923037	0	+	0.282828	[0,0.32]	chr15	731075	134	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	16	2	3.40203	3.620215	3.8384	1.34002e-4	3.60007e-6	0.00529785	2.20533e-4
chr1	121342219	121342319	281481	0	+	0.43	(0.424,0.459]	chr1	28926	172	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.22652	3.61999	4.01346	0.00778514	1.43888e-4	0.130982	0.00569484
chr11	694947	695047	6533844	0	-	0.81	(0.629,1]	chr11	593081	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000685854.1:ENST00000683307.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000693164.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	3.02603	3.61984	4.21365	1.65614e-6	4.25699e-7	1.09028e-4	3.19936e-5
chr19	52204095	52204193	9380556	0	+	0.520408	(0.49,0.526]	chr19	914694	17	INTRON	INTRON	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000495876.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	2.88418	3.6197600000000003	4.35534	4.05006e-4	1.32027e-6	0.0135138	8.96115e-5
chr5	96817682	96817781	3552947	0	-	0.515152	(0.49,0.526]	chr5	323614	30	INTRON	INTRON	ENSG00000247121	ENSG00000247121.7	ENST00000501338.5:ENST00000504056.5:ENST00000665723.1:ENST00000660209.1:ENST00000502262.4	lncRNA	lncRNA	lncRNA	lncRNA	4	20	2	2.88418	3.6197600000000003	4.35534	4.05006e-4	1.32027e-6	0.0135138	8.96115e-5
chr17	80578857	80578957	8814674	0	+	0.67	(0.629,1]	chr17	840381	327	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.71511	3.6189	4.52269	0.00203575	3.10525e-4	0.0513388	0.0106515
chr1	67833243	67833343	647499	0	-	0.8	(0.629,1]	chr1	71843	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GNG12	ENSG00000172380.6	ENST00000370982.4:ENST00000494936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.55191	3.6187699999999996	4.68563	0.004809	1.13329e-4	0.0964485	0.00463413
chr5	77422785	77422884	3226154	0	+	0.484848	(0.459,0.49]	chr5	298019	4	INTRON	INTRON	PDE8B	ENSG00000113231.14	ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8:ENST00000505283.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	3.19031	3.6184350000000003	4.04656	5.81725e-5	3.80472e-5	0.0026464	0.00181622
chr10	21545145	21545244	5810634	0	+	0.363636	(0.36,0.392]	chr10	522806	34	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000377100.8:ENST00000377091.7:ENST00000650772.1:ENST00000651298.1:ENST00000652497.1:ENST00000495130.5:ENST00000377059.7:ENST00000621220.4:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	7	2	2.97461	3.61762	4.26063	0.00698532	0.00451705	0.123839	0.0875511
chr2	230448093	230448192	1328944	0	+	0.373737	(0.36,0.392]	chr2	137404	8	INTRON	INTRON	SP100	ENSG00000067066.17	ENST00000264052.9:ENST00000427101.6:ENST00000340126.9:ENST00000432979.5:ENST00000409824.5:ENST00000409341.5:ENST00000409112.5:ENST00000409897.5	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	2.97461	3.61762	4.26063	0.00698532	0.00451705	0.123839	0.0875511
chr1	240406061	240406161	481864	0	+	0.66	(0.629,1]	chr1	51065	131	INTRON	INTRON	FMN2	ENSG00000155816.21	ENST00000319653.14:ENST00000681210.1:ENST00000681741.1:ENST00000681824.1:ENST00000545751.3:ENST00000679980.1:ENST00000679390.1:ENST00000681131.1:ENST00000681805.1:ENST00000681296.1:ENST00000679646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	3.32274	3.6175100000000002	3.91228	7.60906e-4	1.12818e-5	0.0223166	6.02727e-4
chr20	63965640	63965740	9780951	0	-	0.59	(0.57,0.629]	chr20	970129	1	SS5_PROX	SS5_PROX:INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	3.59974	3.61666	3.63358	8.13785e-6	8.02021e-8	4.60466e-4	7.0037e-6
chr4	183309948	183310047	2804280	0	+	0.444444	(0.424,0.459]	chr4	265109	200	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5:ENST00000508747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	2.8224	3.614195	4.40599	0.00212808	0.00154565	0.0533203	0.0389999
chr1	633633	633732	40	0	+	0.393939	(0.392,0.424]	chr1	5	2	EXON_PSEUDO	EXON_PSEUDO	MTATP8P1:MTATP6P1	ENSG00000240409.1:ENSG00000248527.1	ENST00000467115.1:ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	27	2	2.77727	3.6125499999999997	4.44783	9.56563e-5	6.6179e-11	0.00399919	9.13193e-9
chr17	42798267	42798367	8935619	0	-	0.37	(0.36,0.392]	chr17	858586	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COA3	ENSG00000183978.8	ENST00000586680.1:ENST00000328434.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	7	2	2.89308	3.61214	4.3312	0.00845227	0.00387074	0.140721	0.078873
chr7	100365367	100365466	4490978	0	+	0.373737	(0.36,0.392]	chr7	404134	55	INTRON	INTRON	PILRB	ENSG00000121716.21	ENST00000452089.5:ENST00000448382.5:ENST00000609309.3	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	2.89308	3.61214	4.3312	0.00845227	0.00387074	0.140721	0.078873
chr16	89718062	89718155	8625266	0	-	0.537634	(0.526,0.57]	chr16	813907	9	INTRON	INTRON	VPS9D1	ENSG00000075399.14	ENST00000389386.8:ENST00000561976.5:ENST00000563798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	3.09965	3.6113350000000004	4.12302	9.3122e-5	8.93019e-6	0.00393198	4.98528e-4
chr22	17893407	17893507	9982106	0	-	0.55	(0.526,0.57]	chr22	993569	2	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000400561.6:ENST00000495076.5:ENST00000414725.6:ENST00000383094.7:ENST00000461307.5:ENST00000585038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	3.09965	3.6113350000000004	4.12302	9.3122e-5	8.93019e-6	0.00393198	4.98528e-4
chr8	43147163	43147263	4979223	0	+	0.38	(0.36,0.392]	chr8	446864	1	SS5_PROX	SS5_PROX:INTRON	HGSNAT	ENSG00000165102.15	ENST00000379644.9:ENST00000517319.1:ENST00000520704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	19	2	2.82278	3.61088	4.39898	3.30494e-4	8.56612e-8	0.0112871	7.38607e-6
chr6	170398768	170398868	3982363	0	+	0.45	(0.424,0.459]	chr6	361126	28	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.56804	3.610775	4.65351	0.00769936	1.8873e-7	0.135524	1.54537e-5
chr11	35704696	35704796	6372058	0	+	0.49	(0.459,0.49]	chr11	571037	190	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.40387	3.6104950000000002	3.81712	0.0120499	1.53229e-4	0.184357	0.00595859
chr8	81724799	81724899	5206819	0	-	0.46	(0.459,0.49]	chr8	466165	36	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000520635.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517353.5:ENST00000521885.5:ENST00000520941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	11	2	3.40387	3.6104950000000002	3.81712	0.0120499	1.53229e-4	0.184357	0.00595859
chr2	26212926	26213026	1406101	0	-	0.36	(0.32,0.36]	chr2	145788	3	SS3_PROX	SS3_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.31131	3.6101650000000003	3.90902	0.0111187	5.03152e-4	0.179068	0.0161742
chr2	239165422	239165521	1730774	0	-	0.474747	(0.459,0.49]	chr2	177950	11	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000454542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.00648	3.60935	4.21222	0.0112903	9.25181e-6	0.181488	5.14007e-4
chr5	178206110	178206170	3404351	0	+	0.466667	(0.459,0.49]	chr5	312636	1	SS5_PROX	SS5_PROX:INTRON	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5:ENST00000504796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.00648	3.60935	4.21222	0.0112903	9.25181e-6	0.181488	5.14007e-4
chr19	19534464	19534559	9311846	0	+	0.505263	(0.49,0.526]	chr19	902472	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	YJEFN3	ENSG00000250067.12	ENST00000436027.9:ENST00000458210.7:ENST00000514277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	42	171	2	3.5328	3.609235	3.68567	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	36228464	36228564	3440869	0	-	0.5	(0.49,0.526]	chr5	316401	5	INTRON	INTRON	NADK2	ENSG00000152620.13	ENST00000381937.9:ENST00000397338.5:ENST00000282512.7:ENST00000506945.5:ENST00000514504.5:ENST00000511088.1	protein_coding	protein_coding	protein_coding	protein_coding	45	181	2	3.544	3.609115	3.67423	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	37524087	37524187	3153293	0	+	0.43	(0.424,0.459]	chr5	291417	71	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	49	2	3.31696	3.6087249999999997	3.90049	7.52441e-9	1e-12	7.80218e-7	1.72912e-10
chr12	123511564	123511664	7314341	0	-	0.52	(0.49,0.526]	chr12	675726	117	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	3.26127	3.6081950000000003	3.95512	2.44493e-5	2.842e-7	0.00121977	2.21461e-5
chr17	76428248	76428348	9015555	0	-	0.34	(0.32,0.36]	chr17	870480	223	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	16	2	3.3435	3.608045	3.87259	3.96495e-5	2.33974e-5	0.00188516	0.00116109
chr17	46943704	46943803	8730288	0	+	0.545455	(0.526,0.57]	chr17	829512	18	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	11	2	2.83139	3.6069	4.38241	0.00350122	0.00101891	0.0746524	0.0276375
chr13	111228725	111228824	7447449	0	+	0.545455	(0.526,0.57]	chr13	685733	105	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.57946	3.606665	4.63387	0.0110174	2.57391e-4	0.179063	0.00911512
chr6	46653298	46653398	3789847	0	+	0.8	(0.629,1]	chr6	347689	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC25A27	ENSG00000153291.16	ENST00000411689.6:ENST00000371347.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.63461	3.6065500000000004	4.57849	0.0028169	2.2493e-4	0.0647686	0.00827964
chr13	99348442	99348542	7429551	0	+	0.48	(0.459,0.49]	chr13	684407	75	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	2.85096	3.60588	4.3608	1.61211e-4	2.23014e-6	0.00615251	1.43671e-4
chr8	9020349	9020406	4922110	0	+	0.385965	(0.36,0.392]	chr8	440145	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	18	2	2.68866	3.60574	4.52282	0.00234853	1.58282e-8	0.0566232	1.55617e-6
chr17	513648	513748	8829449	0	-	0.51	(0.49,0.526]	chr17	842532	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	104	2	3.47125	3.605085	3.73892	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	114716060	114716160	732561	0	-	0.46	(0.459,0.49]	chr1	78536	1	CDS_START	CDS_START:CDS:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	48	174	2	3.46913	3.605075	3.74102	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	38522648	38522747	4055167	0	-	0.434343	(0.424,0.459]	chr6	369512	177	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	3.47733	3.60506	3.73279	2.01844e-4	1.78903e-5	0.00755335	9.13813e-4
chr2	182409080	182409180	1636312	0	-	0.38	(0.36,0.392]	chr2	168577	1443	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	126	298	2	3.53486	3.604835	3.67481	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	77215687	77215787	3224060	0	+	0.48	(0.459,0.49]	chr5	297894	13	INTRON	INTRON	PDE8B	ENSG00000113231.14	ENST00000505926.5:ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8:ENST00000502945.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.56515	3.6046899999999997	3.64423	8.21277e-4	6.20842e-4	0.0238805	0.0191195
chr9	120646301	120646401	5714586	0	-	0.47	(0.459,0.49]	chr9	512304	232	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.56515	3.6046899999999997	3.64423	8.21277e-4	6.20842e-4	0.0238805	0.0191195
chr12	128663917	128664017	7051568	0	+	0.62	(0.57,0.629]	chr12	646502	472	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.20738	3.604355	4.00133	0.00279229	1.78261e-5	0.064521	9.13271e-4
chr1	1853177	1853276	495412	0	-	0.474747	(0.459,0.49]	chr1	53110	131	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr1	41031592	41031692	122066	0	+	0.46	(0.459,0.49]	chr1	14348	25	INTRON	INTRON	SLFNL1-AS1	ENSG00000281207.1	ENST00000626479.1	lncRNA	lncRNA	lncRNA	lncRNA	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr1	167272553	167272652	328064	0	+	0.474747	(0.459,0.49]	chr1	36841	36	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr19	3976151	3976251	9411701	0	-	0.47	(0.459,0.49]	chr19	920589	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr19	32987624	32987723	9477691	0	-	0.474747	(0.459,0.49]	chr19	932357	70	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr2	127873727	127873827	1562416	0	-	0.47	(0.459,0.49]	chr2	162219	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMMECR1L	ENSG00000144233.11	ENST00000679797.1:ENST00000681549.1:ENST00000272647.10:ENST00000393001.1:ENST00000681313.1:ENST00000679574.1:ENST00000680246.1:ENST00000680886.1:ENST00000680045.1:ENST00000680145.1:ENST00000681844.1:ENST00000680603.1:ENST00000680431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr2	190210296	190210394	1649524	0	-	0.489796	(0.459,0.49]	chr2	169557	10	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000486981.1:ENST00000410045.5:ENST00000416732.5:ENST00000489147.1:ENST00000409820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr3	65872401	65872501	2324843	0	-	0.47	(0.459,0.49]	chr3	225644	1519	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr5	64767209	64767308	3490407	0	-	0.464646	(0.459,0.49]	chr5	319698	17	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000495198.6:ENST00000510616.5:ENST00000506252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	8	2	3.39129	3.6042050000000003	3.81712	0.0120499	0.00244536	0.184357	0.0587626
chr10	46012954	46013026	6122501	0	-	0.5	(0.49,0.526]	chr10	548428	2	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	45	182	2	3.55339	3.60416	3.65493	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	65347095	65347195	1472578	0	-	0.48	(0.459,0.49]	chr2	152444	18	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	3.00155	3.603945	4.20634	0.00276656	0.00201907	0.0641652	0.0510613
chr7	24907682	24907781	4658180	0	-	0.464646	(0.459,0.49]	chr7	418640	147	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415162.5:ENST00000441059.5:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.00155	3.603945	4.20634	0.00276656	0.00201907	0.0641652	0.0510613
chr1	235161228	235161328	890191	0	-	0.68	(0.629,1]	chr1	99166	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000474086.5:ENST00000476261.5:ENST00000429912.1:ENST00000486751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.52204	3.603835	4.68563	2.64055e-4	1.13329e-4	0.00945161	0.00463413
chr8	23443055	23443153	5143347	0	-	0.530612	(0.526,0.57]	chr8	460252	6	INTRON	INTRON	ENTPD4	ENSG00000197217.13	ENST00000356206.10:ENST00000358689.9:ENST00000417069.6:ENST00000523958.5:ENST00000519839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	3.23242	3.603685	3.97495	3.23436e-4	3.21576e-5	0.0113067	0.00156852
chr2	210583505	210583604	1296173	0	+	0.444444	(0.424,0.459]	chr2	134085	4	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	25	75	2	3.41327	3.6028599999999997	3.79245	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	113409668	113409728	5699284	0	-	0.466667	(0.459,0.49]	chr9	511390	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1:ENST00000475080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	54	2	3.59345	3.60255	3.61165	6.46783e-12	1.48126e-12	1.01923e-9	2.5056e-10
chr16	501908	502007	8294945	0	+	0.59596	(0.57,0.629]	chr16	770358	46	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	3.28948	3.602505	3.91553	0.00651627	0.00212278	0.114061	0.0532704
chr16	8858165	8858263	8313682	0	+	0.622449	(0.57,0.629]	chr16	774704	19	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000683274.1:ENST00000565934.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	10	2	3.28948	3.602505	3.91553	0.00651627	0.00212278	0.114061	0.0532704
chr6	165777825	165777925	4268518	0	-	0.57	(0.526,0.57]	chr6	386882	663	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	2.87462	3.60218	4.32974	4.22914e-4	1.55497e-6	0.0140492	1.02493e-4
chr1	113013742	113013842	261939	0	+	0.55	(0.526,0.57]	chr1	27086	50	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5	lncRNA	lncRNA	lncRNA	lncRNA	3	17	2	3.32233	3.6021	3.88187	1.36681e-4	8.23795e-5	0.00539233	0.00351856
chr20	63678725	63678820	9687521	0	+	0.631579	(0.629,1]	chr20	957684	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	264	2	3.2454	3.601685	3.95797	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	111754318	111754417	10206446	0	+	0.444444	(0.424,0.459]	chrX	1016408	11	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000485371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	52	2	3.47783	3.601075	3.72432	4.32435e-11	1e-12	6.10893e-9	1.72912e-10
chr9	134774858	134774912	5525076	0	+	0.666667	(0.629,1]	chr9	496607	1	CDS	CDS:EXON_MRNA	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	29	199	2	3.03486	3.60045	4.16604	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	94966145	94966244	5026549	0	+	0.484848	(0.459,0.49]	chr8	451382	76	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.43515	3.60008	4.76501	0.00338763	1.46149e-4	0.0728314	0.00564049
chr20	58651723	58651817	9682335	0	+	0.531915	(0.526,0.57]	chr20	956380	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	54	2	3.29243	3.6000550000000002	3.90768	5.43815e-9	1e-12	5.77546e-7	1.72912e-10
chr9	137207907	137208007	5529372	0	+	0.56	(0.526,0.57]	chr9	497898	12	INTRON	INTRON	NDOR1	ENSG00000188566.15	ENST00000613750.1:ENST00000371521.8:ENST00000612145.1:ENST00000684003.1:ENST00000427047.6:ENST00000458322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	2.75687	3.5992800000000003	4.44169	0.00442955	8.21639e-4	0.0875511	0.0238903
chr6	63684864	63684961	3803088	0	+	0.412371	(0.392,0.424]	chr6	348820	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	16	2	2.30301	3.59814	4.89327	0.0122095	3.77123e-8	0.186377	3.4456e-6
chr14	34437903	34438003	7801752	0	-	0.48	(0.459,0.49]	chr14	718161	22	INTRON	INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.31269	3.5975799999999998	3.88247	0.0104144	0.00308309	0.170122	0.0699986
chr15	78455140	78455240	8047929	0	+	0.49	(0.459,0.49]	chr15	743819	149	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	8	2	3.31269	3.5975799999999998	3.88247	0.0104144	0.00308309	0.170122	0.0699986
chr2	176280097	176280197	1217139	0	+	0.47	(0.459,0.49]	chr2	127658	93	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	8	2	3.31269	3.5975799999999998	3.88247	0.0104144	0.00308309	0.170122	0.0699986
chr7	111385970	111386070	4817562	0	-	0.49	(0.459,0.49]	chr7	431926	4221	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	8	2	3.31269	3.5975799999999998	3.88247	0.0104144	0.00308309	0.170122	0.0699986
chr6	4950085	4950184	3693886	0	+	0.525253	(0.49,0.526]	chr6	336571	60	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	3.49758	3.59732	3.69706	2.1289e-6	1.11151e-7	1.38563e-4	9.3162e-6
chrM	8914	9010	10480466	0	+	0.5	(0.49,0.526]	chrM	1038999	4	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	88	349	2	3.55216	3.596845	3.64153	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	121496531	121496626	6274202	0	-	0.515789	(0.49,0.526]	chr10	561496	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5854	22841	2	3.56285	3.596145	3.6294400000000002	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	18543666	18543737	9983543	0	-	0.591549	(0.57,0.629]	chr22	993675	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PI4KAP1	ENSG00000274602.5	ENST00000652586.1:ENST00000617243.4:ENST00000618794.4:ENST00000612579.4:ENST00000612500.4:ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	10	2	3.20738	3.59403	3.98068	0.0053729	0.00279229	0.100211	0.064521
chr1	170541248	170541332	337913	0	+	0.440476	(0.424,0.459]	chr1	37700	2	INTRON	INTRON	GORAB	ENSG00000120370.14	ENST00000685976.1:ENST00000686870.1:ENST00000685515.1:ENST00000688499.1:ENST00000688688.1:ENST00000687880.1:ENST00000692875.1:ENST00000367762.2:ENST00000692234.1:ENST00000691235.1:ENST00000690898.1:ENST00000689173.1:ENST00000498166.6:ENST00000367763.8:ENST00000687370.1:ENST00000693173.1:ENST00000690124.1:ENST00000693373.1:ENST00000692855.1:ENST00000691199.1:ENST00000498600.2:ENST00000684929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	23	2	2.93356	3.59364	4.25372	6.28281e-5	5.36136e-8	0.00278285	4.85529e-6
chr1	67430058	67430129	646171	0	-	0.633803	(0.629,1]	chr1	71820	2	CDS	CDS:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	12	84	2	3.18799	3.59288	3.99777	1.56142e-12	1e-12	2.62649e-10	1.73382e-10
chr4	25181847	25181947	2585462	0	+	0.53	(0.526,0.57]	chr4	248215	207	INTRON	INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.98407	3.5917	5.19933	0.0117294	4.16513e-6	0.188071	2.48371e-4
chr8	140904852	140904952	5299472	0	-	0.34	(0.32,0.36]	chr8	473183	137	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	55	2	3.45074	3.590135	3.72953	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	95898544	95898642	7554414	0	-	0.408163	(0.392,0.424]	chr13	694741	29	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.39796	3.58995	3.78194	0.00439831	7.47402e-4	0.0875511	0.0225125
chr18	35663027	35663127	9097524	0	+	0.41	(0.392,0.424]	chr18	878930	27	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000269195.6:ENST00000591924.5:ENST00000589189.5:ENST00000591081.1:ENST00000590654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.39796	3.58995	3.78194	0.00439831	7.47402e-4	0.0875511	0.0225125
chr16	74985070	74985123	8602657	0	-	0.679245	(0.629,1]	chr16	810955	2	UTR5	UTR5:EXON_MRNA:INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000568323.5:ENST00000562331.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.05121	3.58982	4.12843	0.00356029	0.00233396	0.0753972	0.0563219
chr15	64228012	64228112	8212636	0	-	0.4	(0.392,0.424]	chr15	761637	109	INTRON	INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000635514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	3.47186	3.58968	3.7075	0.00366403	9.40427e-4	0.0766409	0.0266969
chr3	172054137	172054236	2077418	0	+	0.424242	(0.392,0.424]	chr3	206050	68	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.47186	3.58968	3.7075	0.00366403	9.40427e-4	0.0766409	0.0266969
chr1	212608722	212608818	426163	0	+	0.645833	(0.629,1]	chr1	45913	2	UTR5	UTR5:EXON_MRNA:INTRON	ATF3	ENSG00000162772.17	ENST00000366987.6:ENST00000366981.8:ENST00000613954.4:ENST00000465155.5:ENST00000341491.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.84021	3.5896	4.33899	0.00897489	8.51164e-4	0.155806	0.0245129
chr16	29107058	29107157	8365106	0	+	0.676768	(0.629,1]	chr16	780394	25	INTRON	INTRON	RRN3P2	ENSG00000103472.10	ENST00000564580.5:ENST00000427965.6	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.84021	3.5896	4.33899	0.00897489	8.51164e-4	0.155806	0.0245129
chr2	95376905	95377004	1094920	0	+	0.363636	(0.36,0.392]	chr2	117035	13	INTRON	INTRON	KCNIP3	ENSG00000115041.13	ENST00000295225.10:ENST00000377181.2:ENST00000360990.7:ENST00000468529.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	20	2	2.99634	3.58831	4.18028	2.99447e-5	7.51712e-7	0.00144726	5.41481e-5
chr9	21892843	21892943	5363718	0	+	0.35	(0.32,0.36]	chr9	478720	259	INTRON	INTRON	MTAP	ENSG00000099810.21	ENST00000580900.5:ENST00000577563.1	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	3.07269	3.588305	4.10392	5.62304e-5	2.52043e-12	0.00256405	4.14857e-10
chr5	59137183	59137283	3473600	0	-	0.4	(0.392,0.424]	chr5	319179	457	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	20	2	3.10951	3.5873600000000003	4.06521	4.28069e-4	3.68288e-8	0.0141511	3.38313e-6
chr10	110929732	110929831	5978347	0	+	0.424242	(0.392,0.424]	chr10	537281	84	INTRON	INTRON	SHOC2	ENSG00000108061.13	ENST00000688928.1:ENST00000689997.1:ENST00000689300.1:ENST00000691441.1:ENST00000451838.2:ENST00000692776.1:ENST00000685613.1:ENST00000691903.1:ENST00000687592.1:ENST00000265277.10:ENST00000691151.1:ENST00000685059.1:ENST00000489390.1:ENST00000369452.9:ENST00000691369.1:ENST00000689118.1:ENST00000489783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	14	2	3.54722	3.58593	3.62464	1.52245e-4	1.11057e-4	0.0058275	0.00448562
chr1	88833296	88833348	228085	0	+	0.346154	(0.32,0.36]	chr1	22880	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9:ENST00000495119.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	16	2	2.60111	3.585815	4.57052	5.17734e-4	2.95142e-6	0.0165312	1.84947e-4
chr12	42216871	42216970	7148473	0	-	0.474747	(0.459,0.49]	chr12	656171	40	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	3.39129	3.5856149999999998	3.77994	0.00244536	2.14818e-4	0.0587626	0.00789628
chr7	157144032	157144132	4597782	0	+	0.47	(0.459,0.49]	chr7	413969	43	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	3.39129	3.5856149999999998	3.77994	0.00244536	2.14818e-4	0.0587626	0.00789628
chr1	209834305	209834395	419260	0	+	0.422222	(0.392,0.424]	chr1	45388	6	INTRON	INTRON	UTP25	ENSG00000117597.18	ENST00000491415.7	protein_coding	protein_coding	protein_coding	protein_coding	4	10	2	2.55773	3.58533	4.61293	0.00357576	8.49057e-4	0.0781496	0.0240064
chr12	51083058	51083110	7165121	0	-	0.711538	(0.629,1]	chr12	659328	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000552899.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	3.33315	3.584525	3.8359	2.27928e-5	1.86609e-5	0.00115649	9.4788e-4
chr11	66218957	66219044	6419674	0	+	0.54023	(0.526,0.57]	chr11	578088	4	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000531298.5:ENST00000524784.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	3.04579	3.5844050000000003	4.12302	0.00107756	8.93019e-6	0.0299955	4.98528e-4
chr11	31495312	31495411	6587335	0	-	0.494949	(0.49,0.526]	chr11	599106	67	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	49	2	3.32474	3.58408	3.84342	4.52228e-8	1e-12	4.12296e-6	1.72912e-10
chr2	72420023	72420123	1487276	0	-	0.33	(0.32,0.36]	chr2	153830	398	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000464347.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	14	2	3.10453	3.5830400000000004	4.06155	8.28985e-4	7.26161e-6	0.024032	4.19717e-4
chr2	100946435	100946535	1104673	0	+	0.57	(0.526,0.57]	chr2	118362	82	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5:ENST00000448812.5:ENST00000486017.5:ENST00000492373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	3.4704	3.58282	3.69524	3.03531e-4	4.12702e-5	0.0107298	0.00192437
chr13	112558340	112558413	7567760	0	-	0.465753	(0.459,0.49]	chr13	696292	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5:ENST00000483532.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	3.19447	3.5806649999999998	3.96686	5.54129e-5	9.01543e-6	0.00252909	5.03395e-4
chr6	128287966	128288066	4190882	0	-	0.39	(0.36,0.392]	chr6	381422	450	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000490332.2:ENST00000495748.5:ENST00000429595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	15	2	3.07472	3.580585	4.08645	1.23682e-4	5.567e-5	0.0049353	0.00252666
chr14	105468749	105468849	7770054	0	+	0.71	(0.629,1]	chr14	714145	4	SS5_PROX	SS5_PROX:INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000434050.5:ENST00000552286.5:ENST00000426567.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr16	89490323	89490402	8624754	0	-	0.873418	(0.629,1]	chr16	813754	2	UTR5	UTR5:EXON_MRNA	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000642600.1:ENST00000378332.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr17	46172143	46172232	8949128	0	-	0.640449	(0.629,1]	chr17	860876	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr19	1555662	1555759	9402596	0	-	0.752577	(0.629,1]	chr19	918925	1	CDS	CDS:EXON_MRNA	MEX3D	ENSG00000181588.17	ENST00000402693.5:ENST00000605173.2	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr5	72107531	72107631	3209501	0	+	0.71	(0.629,1]	chr5	296294	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000504183.1:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr5	180618920	180619020	3683470	0	-	0.79	(0.629,1]	chr5	335570	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLT4	ENSG00000037280.16	ENST00000261937.11:ENST00000393347.7:ENST00000507059.5:ENST00000502649.5:ENST00000619105.4:ENST00000514810.1:ENST00000512795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.76554	3.5799900000000004	4.39444	0.0112307	6.41849e-4	0.181488	0.0196462
chr7	76346126	76346226	4737800	0	-	0.53	(0.526,0.57]	chr7	425376	155	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.93862	3.5785599999999995	4.2185	4.25861e-5	3.11192e-11	0.0019751	4.47645e-9
chr12	104879620	104879720	7266529	0	-	0.38	(0.36,0.392]	chr12	669300	127	INTRON	INTRON	SLC41A2	ENSG00000136052.10	ENST00000258538.8	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.89308	3.57829	4.2635	0.00845227	4.58367e-7	0.140721	3.4135e-5
chr12	120496081	120496166	7032830	0	+	0.682353	(0.629,1]	chr12	644233	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000549649.5:ENST00000548342.5:ENST00000548214.1:ENST00000392508.2:ENST00000550178.1:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000550845.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.43034	3.57702	3.7237	4.75614e-5	9.0337e-6	0.00218277	5.04153e-4
chr1	180047738	180047837	367285	0	+	0.262626	[0,0.32]	chr1	39764	32	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000418229.5:ENST00000490047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	11	2	3.40203	3.5762099999999997	3.75039	0.00182075	1.34002e-4	0.0469284	0.00529785
chr20	63678820	63678914	9687522	0	+	0.595745	(0.57,0.629]	chr20	957684	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	102	2	3.52793	3.575225	3.62252	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	57455603	57455703	8400464	0	+	0.53	(0.526,0.57]	chr16	785532	14	INTRON	INTRON	COQ9	ENSG00000088682.14	ENST00000565964.5:ENST00000262507.11:ENST00000564655.5:ENST00000568790.5:ENST00000562734.5:ENST00000564115.5:ENST00000567072.5:ENST00000567933.5:ENST00000562426.5:ENST00000563166.1:ENST00000563391.1:ENST00000567480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	95	2	3.5113	3.575055	3.63881	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	100054881	100054981	243799	0	+	0.4	(0.392,0.424]	chr1	24534	45	INTRON	INTRON	MFSD14A	ENSG00000156875.14	ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.97135	3.574985	4.17862	0.00130048	4.01331e-5	0.0347373	0.00187621
chr7	127934425	127934525	4537123	0	+	0.4	(0.392,0.424]	chr7	407900	47	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	13	2	2.97135	3.574985	4.17862	0.00130048	4.01331e-5	0.0347373	0.00187621
chr19	49103393	49103490	9373299	0	+	0.639175	(0.629,1]	chr19	912718	14	UTR3	UTR3:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	3.54506	3.57354	3.60202	2.07184e-4	1.20607e-4	0.00773072	0.00489816
chr5	179806591	179806691	3407565	0	+	0.89	(0.629,1]	chr5	313107	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SQSTM1	ENSG00000161011.20	ENST00000506042.5:ENST00000514093.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	3.54506	3.57354	3.60202	2.07184e-4	1.20607e-4	0.00773072	0.00489816
chrX	72523554	72523654	10371480	0	-	0.45	(0.424,0.459]	chrX	1029706	279	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	86	2	3.0811	3.57303	4.06496	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	59461652	59461752	7840977	0	-	0.43	(0.424,0.459]	chr14	722181	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GPR135:L3HYPDH	ENSG00000181619.12:ENSG00000126790.12	ENST00000481661.1:ENST00000466522.1:ENST00000395116.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	23	2	3.41142	3.572105	3.73279	1.78903e-5	2.97629e-7	9.13813e-4	2.28522e-5
chr6	25439402	25439502	3745633	0	+	0.45	(0.424,0.459]	chr6	339264	34	INTRON	INTRON	CARMIL1	ENSG00000079691.18	ENST00000461945.1:ENST00000329474.7	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	3.26116	3.5714249999999996	3.88169	8.43922e-4	4.26366e-6	0.0240064	2.53741e-4
chr3	14167553	14167653	2181903	0	-	0.36	(0.32,0.36]	chr3	213107	3	SS3_PROX	SS3_PROX:INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000455144.6:ENST00000452172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	21	2	2.83616	3.57095	4.30574	5.78657e-4	2.57957e-9	0.0182895	2.88765e-7
chr12	20623110	20623210	6844602	0	+	0.34	(0.32,0.36]	chr12	625071	13	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	91	196	2	3.52503	3.56944	3.61385	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	112135961	112136060	7025015	0	+	0.50505	(0.49,0.526]	chr12	642975	5	INTRON	INTRON	TRAFD1	ENSG00000135148.12	ENST00000550051.5:ENST00000257604.9:ENST00000549358.5:ENST00000547063.5:ENST00000548092.5:ENST00000412615.7:ENST00000552890.5:ENST00000552896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	3.50606	3.569265	3.63247	0.0010102	3.91053e-4	0.0282228	0.0131535
chr12	123511068	123511167	7314336	0	-	0.525253	(0.49,0.526]	chr12	675726	112	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	3.50606	3.569265	3.63247	0.0010102	3.91053e-4	0.0282228	0.0131535
chr1	155992407	155992506	779814	0	-	0.494949	(0.49,0.526]	chr1	86290	13	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000477754.2:ENST00000423422.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	2.98025	3.568695	4.15714	0.00319561	0.00137414	0.0699484	0.0360194
chr16	31074761	31074861	8372085	0	+	0.52	(0.49,0.526]	chr16	782056	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF646	ENSG00000167395.10	ENST00000300850.5:ENST00000564189.1:ENST00000428260.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.98025	3.568695	4.15714	0.00319561	0.00137414	0.0699484	0.0360194
chr3	188358616	188358716	2133052	0	+	0.5	(0.49,0.526]	chr3	209628	165	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	2.98025	3.568695	4.15714	0.00319561	0.00137414	0.0699484	0.0360194
chr9	85943182	85943282	5416178	0	+	0.38	(0.36,0.392]	chr9	483613	5	INTRON	INTRON	NAA35	ENSG00000135040.16	ENST00000361671.10:ENST00000416045.4:ENST00000376040.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	15	2	3.02295	3.56846	4.11397	0.00109343	2.41963e-6	0.029258	1.5318e-4
chr4	15644292	15644392	2842013	0	-	0.37	(0.36,0.392]	chr4	269240	4	SS5_PROX	SS5_PROX:INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5:ENST00000507700.5:ENST00000504837.1:ENST00000512066.5:ENST00000503196.5:ENST00000509314.5:ENST00000510802.5:ENST00000507899.1:ENST00000515679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	15	2	3.54131	3.5681450000000003	3.59498	3.17078e-4	1.28326e-5	0.0111061	6.90028e-4
chr12	57420846	57420946	7182128	0	-	0.46	(0.459,0.49]	chr12	663024	247	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	3.56515	3.5673399999999997	3.56953	8.21277e-4	4.08493e-5	0.0238805	0.00193677
chr14	24437035	24437110	7577518	0	+	0.546667	(0.526,0.57]	chr14	698437	1	CDS	CDS:EXON_MRNA	KHNYN	ENSG00000100441.10	ENST00000251343.9:ENST00000556842.5:ENST00000553935.6:ENST00000554268.1:ENST00000556255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	37	2	2.34533	3.567145	4.78896	2.0549e-4	1e-12	0.0075955	1.72912e-10
chr12	4673713	4673813	6809186	0	+	0.47	(0.459,0.49]	chr12	621470	35	INTRON	INTRON	NDUFA9	ENSG00000139180.11	ENST00000266544.10:ENST00000544675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	3.00155	3.566935	4.13232	0.00201907	1.41387e-5	0.0510613	7.54814e-4
chr18	9952052	9952152	9059841	0	+	0.49	(0.459,0.49]	chr18	875512	8	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	15	2	3.00155	3.566935	4.13232	0.00201907	1.41387e-5	0.0510613	7.54814e-4
chrX	53269963	53270063	10344692	0	-	0.47	(0.459,0.49]	chrX	1027311	25	INTRON	INTRON	IQSEC2	ENSG00000124313.18	ENST00000640694.1:ENST00000675719.1:ENST00000642864.1:ENST00000674510.1:ENST00000375365.2:ENST00000638630.1:ENST00000498281.2:ENST00000639161.2:ENST00000462054.6:ENST00000485377.5:ENST00000675731.1:ENST00000638583.1:ENST00000639485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	3.00155	3.566935	4.13232	0.00201907	1.41387e-5	0.0510613	7.54814e-4
chr12	120903215	120903315	7302405	0	-	0.62	(0.57,0.629]	chr12	673995	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	3.42043	3.5666	3.71277	9.02612e-4	2.54625e-6	0.0258498	1.59749e-4
chr8	55921455	55921554	4987087	0	+	0.444444	(0.424,0.459]	chr8	447441	410	INTRON	INTRON	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.23804	3.5664049999999996	3.89477	0.00649971	2.5121e-4	0.114061	0.00902798
chr8	80039332	80039431	5200276	0	-	0.434343	(0.424,0.459]	chr8	465782	7	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523395.5:ENST00000523193.5:ENST00000523319.6:ENST00000521354.5:ENST00000520877.5:ENST00000521618.1:ENST00000518517.5:ENST00000524194.5:ENST00000521241.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.23804	3.5664049999999996	3.89477	0.00649971	2.5121e-4	0.114061	0.00902798
chr1	32394414	32394441	562001	0	-	0.444444	(0.424,0.459]	chr1	63108	1	UTR5	UTR5:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1:ENST00000531222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	48	2	3.34419	3.56604	3.78789	1.89555e-11	1.11501e-11	2.80445e-9	1.71576e-9
chr3	125339810	125339909	2419056	0	-	0.353535	(0.32,0.36]	chr3	231879	5	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	14	33	2	3.48153	3.56579	3.65005	6.79025e-7	1.3452e-11	4.92095e-5	2.03226e-9
chr5	390488	390588	3108103	0	+	0.43	(0.424,0.459]	chr5	287807	134	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	16	49	2	3.54035	3.56518	3.59001	3.78476e-11	1.71529e-12	5.3978e-9	2.86139e-10
chr5	283524	283624	3107083	0	+	0.53	(0.526,0.57]	chr5	287746	67	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.04579	3.5617300000000003	4.07767	0.00403601	0.00107756	0.0817225	0.0299955
chr17	30120969	30121068	8688898	0	+	0.323232	(0.32,0.36]	chr17	822548	24	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000584423.5:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000479218.6:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	18	2	3.17667	3.5608	3.94493	1.03168e-4	8.63412e-7	0.00426307	6.08224e-5
chr3	131384340	131384439	1997340	0	+	0.50505	(0.49,0.526]	chr3	201012	10	UTR3	UTR3:EXON_MRNA	NUDT16	ENSG00000198585.12	ENST00000537561.5:ENST00000521288.2	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.76614	3.56074	4.35534	0.00430264	1.32027e-6	0.0867442	8.96115e-5
chr10	96865012	96865112	5950119	0	+	0.37	(0.36,0.392]	chr10	533659	62	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.52068	3.5603	3.59992	0.00324516	0.00266188	0.0730386	0.0631592
chr7	7867229	7867329	4306737	0	+	0.39	(0.36,0.392]	chr7	390283	651	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.52068	3.5603	3.59992	0.00324516	0.00266188	0.0730386	0.0631592
chr4	42051366	42051465	2614627	0	+	0.373737	(0.36,0.392]	chr4	250404	15	INTRON	INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	26	2	3.04602	3.5592949999999997	4.07257	1.21044e-5	1.95544e-9	6.58699e-4	2.20322e-7
chr16	680374	680449	8296637	0	+	0.826667	(0.629,1]	chr16	770887	3	UTR5	UTR5:EXON_MRNA	STUB1	ENSG00000103266.11	ENST00000565677.5:ENST00000219548.9:ENST00000569248.5:ENST00000567173.5:ENST00000563505.5:ENST00000567790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	3.23526	3.55853	3.8818	0.0064023	0.00139352	0.114061	0.037038
chr17	82463573	82463670	8823061	0	+	0.659794	(0.629,1]	chr17	841755	11	EXON_MRNA	EXON_MRNA:INTRON	NARF:ENSG00000279744	ENSG00000141562.19:ENSG00000279744.1	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2:ENST00000623828.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	13	2	3.23526	3.55853	3.8818	0.0064023	0.00139352	0.114061	0.037038
chr7	102249141	102249241	4497743	0	+	0.79	(0.629,1]	chr7	405026	2	UTR3	UTR3:EXON_MRNA:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.23526	3.55853	3.8818	0.0064023	0.00139352	0.114061	0.037038
chr9	97983340	97983411	5445859	0	+	0.647887	(0.629,1]	chr9	486155	1	UTR5	UTR5:EXON_MRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.23526	3.55853	3.8818	0.0064023	0.00139352	0.114061	0.037038
chr1	178413531	178413630	361788	0	+	0.363636	(0.36,0.392]	chr1	39135	230	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000696605.1:ENST00000462775.5:ENST00000696606.1:ENST00000696607.1	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.28561	3.55837	3.83113	0.0015215	6.41601e-4	0.0397018	0.0193935
chr12	53462667	53462767	6914961	0	+	0.39	(0.36,0.392]	chr12	631058	1	SS5_PROX	SS5_PROX:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	10	2	3.28561	3.55837	3.83113	0.0015215	6.41601e-4	0.0397018	0.0193935
chr14	69906862	69906962	7682106	0	+	0.33	(0.32,0.36]	chr14	706207	267	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000555917.1:ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	24	2	3.48805	3.558275	3.6285	1.10958e-6	1.68534e-7	7.61206e-5	1.37821e-5
chrX	54549053	54549150	10132883	0	+	0.42268	(0.392,0.424]	chrX	1010793	8	EXON_MRNA	EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674300.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	11	2	3.15287	3.55754	3.96221	0.00224427	1.96069e-4	0.0552099	0.00725539
chr2	3545784	3545871	1373305	0	-	0.436782	(0.424,0.459]	chr2	142047	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNASEH1	ENSG00000171865.10	ENST00000315212.4:ENST00000436842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	60	2	2.94772	3.5572549999999996	4.16679	7.1456e-11	1e-12	9.81999e-9	1.72912e-10
chr12	118300660	118300760	7295716	0	-	0.37	(0.36,0.392]	chr12	672987	31	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	10	2	3.20352	3.55722	3.91092	0.0019364	5.00165e-4	0.0476694	0.0160179
chr16	11768683	11768765	8510116	0	-	0.378049	(0.36,0.392]	chr16	798559	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZC3H7A	ENSG00000122299.12	ENST00000396516.6:ENST00000355758.9:ENST00000571198.5:ENST00000571676.5:ENST00000575041.5:ENST00000576009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	10	2	3.20352	3.55722	3.91092	0.0019364	5.00165e-4	0.0476694	0.0160179
chr5	17252208	17252308	3132668	0	+	0.39	(0.36,0.392]	chr5	289659	340	INTRON	INTRON	BASP1	ENSG00000176788.9	ENST00000606445.1:ENST00000616743.1:ENST00000322611.4	protein_coding	protein_coding	protein_coding	protein_coding	9	23	2	3.3697	3.5570399999999998	3.74438	2.7648e-6	3.9584e-7	1.74315e-4	2.9768e-5
chr10	68037010	68037107	6151101	0	-	0.278351	[0,0.32]	chr10	550279	25	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000463478.1:ENST00000513996.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	9	2	3.05093	3.55666	4.06239	0.00583312	3.10398e-4	0.107081	0.0109114
chr3	125362413	125362513	2419284	0	-	0.39	(0.36,0.392]	chr3	231886	47	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	12	31	2	3.39798	3.556475	3.71497	1.18357e-6	1.30483e-10	8.11031e-5	1.71449e-8
chr5	66149771	66149870	3197205	0	+	0.30303	[0,0.32]	chr5	294889	42	INTRON	INTRON	SREK1	ENSG00000153914.16	ENST00000521691.5:ENST00000612404.4:ENST00000523851.1:ENST00000334121.11:ENST00000520058.1:ENST00000520953.5:ENST00000522912.5:ENST00000524111.5:ENST00000380918.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	9	2	3.36243	3.5564099999999996	3.75039	0.00182075	0.00121149	0.0469284	0.0321344
chr17	63049473	63049573	8770786	0	+	0.41	(0.392,0.424]	chr17	834640	395	INTRON	INTRON	TANC2	ENSG00000170921.16	ENST00000689528.1:ENST00000424789.6:ENST00000389520.8	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.3308	3.5563700000000003	3.78194	7.47402e-4	6.63878e-4	0.0225125	0.0199616
chr6	100740389	100740489	4141954	0	-	0.41	(0.392,0.424]	chr6	377618	143	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	27	2	2.91954	3.554645	4.18975	9.67637e-6	3.14687e-9	5.37502e-4	3.46163e-7
chr17	60456681	60456781	8977244	0	-	0.54	(0.526,0.57]	chr17	864721	3	SS3_PROX	SS3_PROX:INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.97094	3.5536000000000003	4.13626	0.00339748	0.0014221	0.0728314	0.0370226
chrX	73829067	73829156	10373498	0	-	0.449438	(0.424,0.459]	chrX	1029947	1	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5:ENST00000445814.2:ENST00000602495.1	lncRNA	lncRNA	lncRNA	lncRNA	21	66	2	3.30121	3.55337	3.80553	3.73844e-10	1e-12	4.6718e-8	1.73382e-10
chr7	55181385	55181478	4391527	0	+	0.537634	(0.526,0.57]	chr7	395553	2	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	122	474	2	3.43907	3.55333	3.66759	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	95158935	95159035	7741816	0	+	0.53	(0.526,0.57]	chr14	710713	14	EXON_LNCRNA	EXON_LNCRNA	DICER1-AS1	ENSG00000235706.9	ENST00000554631.2:ENST00000692703.1:ENST00000671073.1:ENST00000435343.2:ENST00000439819.6:ENST00000654147.2:ENST00000693197.1:ENST00000661445.1	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	3.40949	3.552365	3.69524	0.00141136	3.03531e-4	0.0368074	0.0107298
chr15	50004111	50004211	8161808	0	-	0.55	(0.526,0.57]	chr15	756761	15	INTRON	INTRON	ATP8B4	ENSG00000104043.15	ENST00000284509.11:ENST00000559726.5:ENST00000559829.5:ENST00000558906.5:ENST00000557955.5:ENST00000674213.1:ENST00000558959.5:ENST00000560437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	3.40949	3.552365	3.69524	0.00141136	3.03531e-4	0.0368074	0.0107298
chr22	37853223	37853320	9941632	0	+	0.515464	(0.49,0.526]	chr22	988498	13	INTRON	INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	55	2	3.16644	3.55113	3.93582	5.05824e-9	1e-12	5.39084e-7	1.72912e-10
chr6	143857651	143857751	3906125	0	+	0.31	[0,0.32]	chr6	356498	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	5	13	2	3.40203	3.54975	3.69747	1.81106e-4	1.34002e-4	0.0069054	0.00529785
chr17	82244011	82244107	9034026	0	-	0.614583	(0.57,0.629]	chr17	873235	15	UTR3	UTR3:EXON_MRNA:INTRON	CSNK1D	ENSG00000141551.15	ENST00000584672.1:ENST00000398519.9:ENST00000314028.11:ENST00000581241.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.6312	3.549735	4.46827	0.00652833	5.2773e-4	0.116779	0.0167673
chr1	244853855	244853954	910788	0	-	0.363636	(0.36,0.392]	chr1	100830	37	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	8	2	2.76763	3.5494149999999998	4.3312	0.00445622	0.00387074	0.0875511	0.078873
chr11	108841314	108841395	6489364	0	+	0.45679	(0.424,0.459]	chr11	586752	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5:ENST00000533198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	102	2	3.18485	3.54903	3.91321	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	2305102	2305199	8627702	0	+	0.42268	(0.392,0.424]	chr17	814444	7	INTRON	INTRON	SRR	ENSG00000167720.13	ENST00000572709.5:ENST00000344595.10:ENST00000576848.1:ENST00000576620.5:ENST00000575840.5:ENST00000574987.1	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	3.33618	3.54861	3.76104	2.59414e-7	2.28476e-9	2.01683e-5	2.57018e-7
chr16	24759758	24759858	8357504	0	+	0.48	(0.459,0.49]	chr16	779122	10	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	27	2	2.71099	3.54779	4.38459	1.2697e-4	2.78194e-9	0.00503988	3.0689e-7
chr1	204269792	204269890	841108	0	-	0.438776	(0.424,0.459]	chr1	93537	11	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1:ENST00000672625.1	protein_coding	protein_coding	protein_coding	protein_coding	14	43	2	3.24668	3.54773	3.84878	7.45218e-9	2.9585200000000002e-12	7.73807e-7	4.88528e-10
chr16	75656006	75656106	8434146	0	+	0.39	(0.36,0.392]	chr16	790500	4	SS3_PROX	SS3_PROX:INTRON	TERF2IP	ENSG00000166848.7	ENST00000300086.5:ENST00000653858.1:ENST00000569234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	2.89308	3.547575	4.20207	0.00845227	1.31711e-8	0.140721	1.30852e-6
chr10	79710946	79711046	6180911	0	-	0.47	(0.459,0.49]	chr10	553542	185	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1	lncRNA	lncRNA	lncRNA	lncRNA	4	17	2	2.96081	3.546565	4.13232	4.52907e-4	1.41387e-5	0.0150584	7.54814e-4
chr15	48748442	48748526	8155557	0	-	0.392857	(0.392,0.424]	chr15	756164	1	CDS	CDS:EXON_MRNA:INTRON	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9	protein_coding	protein_coding	protein_coding	protein_coding	20	53	2	3.29064	3.5463899999999997	3.80214	1.96635e-11	1e-12	2.90009e-9	1.72912e-10
chr10	100237169	100237269	6235655	0	-	0.42	(0.392,0.424]	chr10	557705	2	SS3_PROX	SS3_PROX:INTRON	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	100	2	3.5108	3.5453200000000002	3.57984	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	41233444	41233528	1846301	0	+	0.392857	(0.392,0.424]	chr3	186904	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	16	2	3.54297	3.545095	3.54722	1.52245e-4	1.67511e-5	0.0058275	8.60936e-4
chr14	61787452	61787551	7647540	0	+	0.484848	(0.459,0.49]	chr14	703824	47	INTRON	INTRON	SNAPC1	ENSG00000023608.5	ENST00000216294.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.87644	3.5443300000000004	4.21222	6.44081e-4	9.25181e-6	0.0194527	5.14007e-4
chr15	90905422	90905508	8081849	0	+	0.674419	(0.629,1]	chr15	747532	3	CDS	CDS:EXON_MRNA	MAN2A2	ENSG00000196547.15	ENST00000559999.5:ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000559132.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	72	2	3.08199	3.542865	4.00374	2.18854e-11	7.30371e-12	3.20842e-9	1.13265e-9
chr2	200572415	200572513	1260926	0	+	0.346939	(0.32,0.36]	chr2	131226	15	CDS	CDS:EXON_MRNA	SGO2	ENSG00000163535.18	ENST00000357799.9	protein_coding	protein_coding	protein_coding	protein_coding	10	25	2	3.07269	3.5424100000000003	4.01213	5.62304e-5	4.73668e-10	0.00256405	5.83319e-8
chr11	10172155	10172255	6561217	0	-	0.33	(0.32,0.36]	chr11	596538	1277	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	43	92	2	3.44118	3.54181	3.64244	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	6453051	6453150	8856478	0	-	0.484848	(0.459,0.49]	chr17	846738	19	UTR3	UTR3:EXON_MRNA	PITPNM3	ENSG00000091622.16	ENST00000262483.13:ENST00000421306.7	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	2.90906	3.5415650000000003	4.17407	5.8177e-6	1.51914e-10	3.4137e-4	2.00813e-8
chr6	148782154	148782254	3920761	0	+	0.38	(0.36,0.392]	chr6	357405	341	INTRON	INTRON	UST	ENSG00000111962.8	ENST00000367463.5	protein_coding	protein_coding	protein_coding	protein_coding	7	16	2	2.99634	3.541395	4.08645	1.23682e-4	2.99447e-5	0.0049353	0.00144726
chr3	107558760	107558860	1947083	0	+	0.45	(0.424,0.459]	chr3	196164	320	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	3.44138	3.540895	3.64041	0.00115507	1.51347e-5	0.0316008	8.01855e-4
chr12	123511465	123511564	7314340	0	-	0.515152	(0.49,0.526]	chr12	675726	116	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	2.81323	3.53977	4.26631	8.35112e-4	2.32598e-6	0.0240064	1.50793e-4
chr4	13604291	13604390	2841349	0	-	0.383838	(0.36,0.392]	chr4	269119	55	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	30	72	2	2.94506	3.538725	4.13239	3.67096e-11	1e-12	5.26572e-9	1.72912e-10
chr10	121487353	121487424	6274108	0	-	0.507042	(0.49,0.526]	chr10	561486	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	78	287	2	3.31381	3.537425	3.76104	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	75347992	75348092	6653147	0	-	0.5	(0.49,0.526]	chr11	610002	360	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	3.16684	3.53707	3.9073	0.00470616	7.31994e-5	0.0901733	0.00316256
chr14	31314972	31315071	7795099	0	-	0.494949	(0.49,0.526]	chr14	717860	14	INTRON	INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.16684	3.53707	3.9073	0.00470616	7.31994e-5	0.0901733	0.00316256
chrX	1420289	1420385	10249739	0	-	0.510417	(0.49,0.526]	chrX	1021433	8	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	3.16684	3.53707	3.9073	0.00470616	7.31994e-5	0.0901733	0.00316256
chr9	113408910	113408983	5699274	0	-	0.452055	(0.424,0.459]	chr9	511384	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1:ENST00000475080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	146	395	2	3.2198	3.536765	3.85373	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	149728868	149728966	4232915	0	-	0.44898	(0.424,0.459]	chr6	384551	13	INTRON	INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	3.15825	3.5362549999999997	3.91426	1.12148e-7	9.9248e-8	9.48939e-6	8.34671e-6
chr17	63765993	63766075	8981469	0	-	0.402439	(0.392,0.424]	chr17	865401	2	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000584112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	87	2	3.4631	3.53575	3.6084	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59123395	59123495	3473462	0	-	0.31	[0,0.32]	chr5	319179	319	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	65	2	3.33786	3.53559	3.73332	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	102599845	102599945	10186720	0	+	0.6	(0.57,0.629]	chrX	1014451	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ARMCX5:ARMCX5-GPRASP2	ENSG00000125962.16:ENSG00000271147.8	ENST00000246174.6:ENST00000602463.5:ENST00000473968.7:ENST00000465548.1:ENST00000604957.1:ENST00000477663.6:ENST00000460026.6:ENST00000602366.5:ENST00000466616.5:ENST00000475738.5:ENST00000486740.6:ENST00000476910.6:ENST00000479502.2:ENST00000460793.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	28	2	3.51202	3.53424	3.55646	1.40194e-5	3.507e-7	7.50732e-4	2.66915e-5
chr2	43563112	43563211	1436852	0	-	0.333333	(0.32,0.36]	chr2	148923	10	UTR3	UTR3:EXON_MRNA:INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000402360.6:ENST00000404790.5:ENST00000474159.6:ENST00000403856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	3.31131	3.5338900000000004	3.75647	0.0111187	6.44559e-5	0.179068	0.00284455
chr17	43269356	43269456	8938155	0	-	0.5	(0.49,0.526]	chr17	859071	392	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	13	53	2	3.46963	3.5333699999999997	3.59711	4.25637e-10	1.66889e-12	5.26252e-8	2.78542e-10
chrX	64957230	64957330	10361244	0	-	0.43	(0.424,0.459]	chrX	1028930	346	INTRON	INTRON	ZC4H2	ENSG00000126970.16	ENST00000447788.6:ENST00000374839.8:ENST00000337990.2:ENST00000488608.5:ENST00000492653.5:ENST00000488831.5:ENST00000476032.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	3.3314	3.532095	3.73279	0.00517898	1.78903e-5	0.0992178	9.13813e-4
chr15	92945015	92945091	8086908	0	+	0.447368	(0.424,0.459]	chr15	747967	1	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000420239.7:ENST00000628375.2:ENST00000625990.3:ENST00000626782.2:ENST00000637572.1:ENST00000637613.1:ENST00000636881.1:ENST00000625243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	24	2	2.70457	3.5318300000000002	4.35909	1.39147e-4	1.2237e-8	0.00558305	1.23286e-6
chr11	34106574	34106668	6368771	0	+	0.425532	(0.424,0.459]	chr11	570585	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NAT10	ENSG00000135372.10	ENST00000531159.6:ENST00000532503.5:ENST00000257829.8:ENST00000531723.1:ENST00000529523.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	12	2	3.26116	3.5306499999999996	3.80014	8.43922e-4	3.54639e-4	0.0240064	0.0120332
chr5	59641382	59641482	3478665	0	-	0.45	(0.424,0.459]	chr5	319265	550	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	3.26116	3.5306499999999996	3.80014	8.43922e-4	3.54639e-4	0.0240064	0.0120332
chr3	123936053	123936153	2415282	0	-	0.38	(0.36,0.392]	chr3	231536	19	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5:ENST00000485949.5:ENST00000471054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	10	2	2.97461	3.53053	4.08645	0.00698532	1.23682e-4	0.123839	0.0049353
chr3	125363012	125363112	2419290	0	-	0.46	(0.459,0.49]	chr3	231886	53	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	13	48	2	3.46565	3.52955	3.59345	8.19744e-10	6.46783e-12	9.80199e-8	1.01923e-9
chr19	52724862	52724961	9533803	0	-	0.383838	(0.36,0.392]	chr19	942593	3	INTRON	INTRON	ZNF611	ENSG00000213020.10	ENST00000540744.5:ENST00000543227.5:ENST00000453741.6:ENST00000652185.1:ENST00000595001.5:ENST00000602162.5:ENST00000319783.5:ENST00000595798.5:ENST00000601249.5:ENST00000601643.5:ENST00000600943.5:ENST00000598639.5:ENST00000597343.6:ENST00000598723.5:ENST00000640952.1:ENST00000596702.5:ENST00000601447.5:ENST00000597566.5:ENST00000599798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	10	2	3.45885	3.529385	3.59992	0.00266188	4.24507e-4	0.0631592	0.0140677
chr20	34104154	34104243	9727530	0	-	0.41573	(0.392,0.424]	chr20	963016	2	INTRON	INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	12	33	2	3.05808	3.52933	4.00058	1.18812e-6	5.15975e-11	8.13398e-5	7.21265e-9
chr21	14135214	14135314	9782394	0	+	0.44	(0.424,0.459]	chr21	970300	107	INTRON	INTRON	ENSG00000224905	ENSG00000224905.8	ENST00000428809.5:ENST00000432621.5	lncRNA	lncRNA	lncRNA	lncRNA	3	12	2	3.16328	3.529025	3.89477	0.0011776	2.5121e-4	0.0313499	0.00902798
chr12	132035900	132035998	7057928	0	+	0.581633	(0.57,0.629]	chr12	647307	34	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	64	2	3.45002	3.528745	3.60747	1.00068e-10	1e-12	1.34674e-8	1.73382e-10
chr7	7577766	7577865	4304134	0	+	0.464646	(0.459,0.49]	chr7	390179	32	INTRON	INTRON	MIOS	ENSG00000164654.16	ENST00000405785.5:ENST00000340080.9	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.47473	3.527245	4.57976	0.00637649	4.98571e-4	0.114061	0.0160179
chr16	18351858	18351943	8522700	0	-	0.658824	(0.629,1]	chr16	800061	2	EXON_PSEUDO	EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	16	2	2.36786	3.526745	4.68563	0.011144	1.13329e-4	0.179068	0.00463413
chr19	38304653	38304753	9492164	0	-	0.67	(0.629,1]	chr19	934172	12	UTR3	UTR3:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.36786	3.526745	4.68563	0.011144	1.13329e-4	0.179068	0.00463413
chr8	80071743	80071842	5200619	0	-	0.50505	(0.49,0.526]	chr8	465838	40	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000520795.5:ENST00000520741.1:ENST00000521561.1:ENST00000523783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.41199	3.52663	4.64127	0.00770591	2.4929e-4	0.135524	0.0089494
chrX	53087384	53087482	10131709	0	+	0.520408	(0.49,0.526]	chrX	1010647	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TSPYL2	ENSG00000184205.14	ENST00000375442.8:ENST00000556808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	2.41199	3.52663	4.64127	0.00770591	2.4929e-4	0.135524	0.0089494
chr20	1325982	1326082	9551443	0	+	0.52	(0.49,0.526]	chr20	945668	2	SS5_PROX	SS5_PROX:INTRON	SDCBP2-AS1	ENSG00000234684.8	ENST00000665859.2:ENST00000609470.6:ENST00000609745.1:ENST00000658491.1:ENST00000607947.1:ENST00000670879.1:ENST00000609285.6:ENST00000446423.2:ENST00000653665.1	lncRNA	lncRNA	lncRNA	lncRNA	5	21	2	2.78678	3.5265449999999996	4.26631	2.22218e-4	2.32598e-6	0.00825054	1.50793e-4
chrX	53083305	53083405	10131662	0	+	0.55	(0.526,0.57]	chrX	1010632	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TSPYL2	ENSG00000184205.14	ENST00000375442.8:ENST00000553557.5:ENST00000579390.1:ENST00000578306.5:ENST00000556808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	47	2	3.23607	3.52616	3.81625	2.37657e-8	4.0401e-12	2.28421e-6	6.50906e-10
chr10	130155700	130155800	6023866	0	+	0.5	(0.49,0.526]	chr10	540450	100	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	3.33171	3.5261500000000003	3.72059	2.73826e-4	1.30693e-4	0.00975361	0.00517526
chr2	164674292	164674392	1597816	0	-	0.5	(0.49,0.526]	chr2	165438	80	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000495084.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	16	2	3.33171	3.5261500000000003	3.72059	2.73826e-4	1.30693e-4	0.00975361	0.00517526
chr21	32771487	32771568	9859318	0	-	0.851852	(0.629,1]	chr21	978762	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PAXBP1	ENSG00000159086.15	ENST00000331923.9:ENST00000443785.5:ENST00000290178.4:ENST00000472588.5:ENST00000464256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	3.25188	3.525915	3.79995	3.84594e-5	2.99254e-5	0.0018139	0.00144698
chr6	32121848	32121947	4037819	0	-	0.484848	(0.459,0.49]	chr6	366932	1	INTRON	INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	2.68952	3.52516	4.3608	0.00206127	2.23014e-6	0.0505307	1.43671e-4
chr7	55095827	55095927	4390647	0	+	0.45	(0.424,0.459]	chr7	395429	519	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	28	2	2.8224	3.524525	4.22665	0.00212808	2.87415e-12	0.0533203	4.74858e-10
chr5	116203250	116203350	3286864	0	+	0.44	(0.424,0.459]	chr5	302259	687	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	3.47733	3.5220399999999996	3.56675	2.01844e-4	7.38392e-5	0.00755335	0.0032006
chr12	112243435	112243519	7283997	0	-	0.607143	(0.57,0.629]	chr12	671719	2	CDS	CDS:EXON_MRNA	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	3.03884	3.5217599999999996	4.00468	0.00676458	4.9499e-8	0.1204	4.50044e-6
chr12	31252077	31252164	7133811	0	-	0.54023	(0.526,0.57]	chr12	655197	2	EXON_PSEUDO	EXON_PSEUDO	ENSG00000243517	ENSG00000243517.1	ENST00000495623.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	19	2	2.78619	3.521745	4.2573	9.32195e-4	2.46218e-6	0.0262648	1.55994e-4
chrM	1314	1410	10480395	0	+	0.4375	(0.424,0.459]	chrM	1038986	8	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	609	1666	2	3.51792	3.521675	3.52543	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	165836195	165836295	4269108	0	-	0.44	(0.424,0.459]	chr6	386909	71	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	23	2	3.46451	3.5204250000000004	3.57634	3.8234e-6	1.6041e-6	2.3279e-4	1.05645e-4
chr12	51053100	51053188	6911475	0	+	0.397727	(0.392,0.424]	chr12	630192	5	INTRON	INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	18	2	3.49288	3.52005	3.54722	1.52245e-4	2.56494e-6	0.0058275	1.60796e-4
chr6	104751071	104751171	4143614	0	-	0.44	(0.424,0.459]	chr6	377703	2	INTRON	INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000518402.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	21	2	3.22652	3.519965	3.81341	1.43888e-4	2.32912e-7	0.00569484	1.87449e-5
chr8	42169446	42169543	4975518	0	+	0.391753	(0.36,0.392]	chr8	446274	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP3M2	ENSG00000070718.12	ENST00000174653.3:ENST00000518421.5:ENST00000396926.8:ENST00000520689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	40	2	3.04602	3.51964	3.99326	1.21044e-5	1e-12	6.58699e-4	1.72912e-10
chr12	20669659	20669758	6845080	0	+	0.484848	(0.459,0.49]	chr12	625129	151	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	69	232	2	3.44967	3.519565	3.58946	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	66522760	66522850	6421200	0	+	0.366667	(0.36,0.392]	chr11	578599	2	SS3_PROX	SS3_PROX:INTRON	BBS1	ENSG00000174483.20	ENST00000526760.5:ENST00000533644.5:ENST00000318312.12:ENST00000533557.5:ENST00000525809.5:ENST00000529955.5:ENST00000455748.6:ENST00000526035.5:ENST00000532908.5:ENST00000529766.5:ENST00000393994.4:ENST00000630659.2:ENST00000524458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	25	2	3.3697	3.5194549999999998	3.66921	4.11281e-7	3.9584e-7	3.09732e-5	2.9768e-5
chr16	89516699	89516796	8481895	0	+	0.505155	(0.49,0.526]	chr16	793024	23	INTRON	INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000643307.1:ENST00000566371.6:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000642436.1:ENST00000644210.1:ENST00000564047.2:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000341316.6:ENST00000645533.1:ENST00000646958.1:ENST00000642371.1:ENST00000643105.1:ENST00000645354.1:ENST00000643957.1:ENST00000642334.1:ENST00000647227.1:ENST00000562775.2:ENST00000568151.1:ENST00000646445.1:ENST00000564409.2:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000643178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	3.42424	3.519165	3.61409	8.36246e-5	1.16311e-5	0.00356417	6.41146e-4
chr15	78895104	78895204	8049753	0	+	0.42	(0.392,0.424]	chr15	744114	2	SS5_PROX	SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	18	2	3.4131	3.5188699999999997	3.62464	1.11057e-4	4.16676e-6	0.00448562	2.48371e-4
chr12	132679853	132679953	7325078	0	-	0.5	(0.49,0.526]	chr12	676988	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	2.31862	3.516755	4.71489	0.0101596	1.81396e-4	0.166645	0.0069054
chrX	54811573	54811653	10133670	0	+	0.4375	(0.424,0.459]	chrX	1010866	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000463787.5:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1:ENST00000487482.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	10	2	2.93877	3.516515	4.09426	0.00651192	8.23195e-4	0.116758	0.0239037
chr13	27620940	27621039	7339461	0	+	0.656566	(0.629,1]	chr13	678514	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	POLR1D	ENSG00000186184.20	ENST00000626929.1:ENST00000627604.1:ENST00000626064.1:ENST00000637180.1:ENST00000621089.2:ENST00000693488.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	3.43034	3.5161800000000003	3.60202	1.20607e-4	9.0337e-6	0.00489816	5.04153e-4
chr2	62879601	62879700	1050339	0	+	0.424242	(0.392,0.424]	chr2	111865	47	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000462441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	23	2	3.49288	3.51479	3.5367	2.56494e-6	9.9735e-7	1.60796e-4	7.00342e-5
chr17	46169605	46169705	8949102	0	-	0.39	(0.36,0.392]	chr17	860870	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	12	2	3.4283	3.51411	3.59992	0.00266188	5.8205e-5	0.0631592	0.0026464
chr5	146162141	146162238	3634250	0	-	0.360825	(0.36,0.392]	chr5	330136	13	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	12	2	3.4283	3.51411	3.59992	0.00266188	5.8205e-5	0.0631592	0.0026464
chr10	101694822	101694913	6238002	0	-	0.725275	(0.629,1]	chr10	558196	3	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	FBXW4	ENSG00000107829.15	ENST00000331272.9:ENST00000664783.1:ENST00000457105.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	96	2	3.46012	3.513715	3.56731	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	103557790	103557889	248499	0	+	0.252525	[0,0.32]	chr1	25113	23	INTRON	INTRON	AMY2B	ENSG00000240038.7	ENST00000477657.5:ENST00000361355.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	7	2	3.27638	3.513385	3.75039	0.0118823	0.00182075	0.184357	0.0469284
chr12	28246572	28246672	6857232	0	+	0.29	[0,0.32]	chr12	626376	200	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	7	2	3.27638	3.513385	3.75039	0.0118823	0.00182075	0.184357	0.0469284
chr20	58351387	58351486	9681533	0	+	0.272727	[0,0.32]	chr20	956315	55	INTRON	INTRON	RAB22A	ENSG00000124209.4	ENST00000244040.4	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	3.27638	3.513385	3.75039	0.0118823	0.00182075	0.184357	0.0469284
chrX	108664508	108664608	10200230	0	+	0.26	[0,0.32]	chrX	1015890	87	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	3.27638	3.513385	3.75039	0.0118823	0.00182075	0.184357	0.0469284
chr11	47842180	47842280	6606864	0	-	0.48	(0.459,0.49]	chr11	601756	12	INTRON	INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000694867.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	49	2	3.06079	3.513365	3.96594	2.11746e-9	1.46683e-12	2.38829e-7	2.47125e-10
chr16	28203993	28204093	8539889	0	-	0.44	(0.424,0.459]	chr16	802974	226	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000569951.1:ENST00000566073.1	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	3.22652	3.51333	3.80014	3.54639e-4	1.43888e-4	0.0120332	0.00569484
chr16	67091017	67091117	8407734	0	+	0.44	(0.424,0.459]	chr16	786818	83	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000566281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	14	2	2.8224	3.513005	4.20361	0.00212808	1.79381e-5	0.0533203	9.13813e-4
chr8	94968932	94969032	5026577	0	+	0.43	(0.424,0.459]	chr8	451382	104	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	3.47733	3.511815	3.5463	0.00153741	2.01844e-4	0.0389999	0.00755335
chr3	196478496	196478595	2531394	0	-	0.454545	(0.424,0.459]	chr3	242672	28	INTRON	INTRON	RNF168	ENSG00000163961.4	ENST00000318037.3:ENST00000437070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	3.0068	3.51172	4.01664	0.00341471	1.00233e-6	0.0729529	7.01342e-5
chr17	29279304	29279404	8902636	0	-	0.29	[0,0.32]	chr17	853230	114	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	3.18466	3.51153	3.8384	6.2959e-4	3.60007e-6	0.0193151	2.20533e-4
chrX	111754417	111754516	10206447	0	+	0.414141	(0.392,0.424]	chrX	1016408	12	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000485371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	2.84278	3.5107	4.17862	0.00949728	4.01331e-5	0.16275	0.00187621
chr14	74689258	74689358	7868173	0	-	0.42	(0.392,0.424]	chr14	724974	32	INTRON	INTRON	AREL1	ENSG00000119682.18	ENST00000557401.5:ENST00000356357.9:ENST00000681099.1:ENST00000681535.1:ENST00000681599.1:ENST00000680030.1:ENST00000556202.5:ENST00000469797.5:ENST00000556589.5:ENST00000555249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	2.76656	3.5101400000000003	4.25372	0.0113141	2.90267e-5	0.181488	0.00141183
chr5	50717290	50717390	3169870	0	+	0.41	(0.392,0.424]	chr5	292639	479	INTRON	INTRON	PARP8	ENSG00000151883.19	ENST00000511363.6:ENST00000505697.6:ENST00000503790.6:ENST00000507812.5:ENST00000503888.5:ENST00000510303.6:ENST00000502524.5:ENST00000281631.10:ENST00000515175.6:ENST00000514342.6:ENST00000503707.6:ENST00000503665.5:ENST00000513738.5:ENST00000514067.6:ENST00000503046.5:ENST00000503193.5:ENST00000515166.5:ENST00000505554.5:ENST00000505180.5:ENST00000503561.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	11	2	2.76656	3.5101400000000003	4.25372	0.0113141	2.90267e-5	0.181488	0.00141183
chr11	118382682	118382776	6507273	0	+	0.457447	(0.424,0.459]	chr11	588788	2	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.0068	3.51013	4.01346	0.00778514	0.00341471	0.130982	0.0729529
chr17	37404961	37405061	8919659	0	-	0.44	(0.424,0.459]	chr17	855289	351	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000615229.4:ENST00000617548.1:ENST00000616352.4:ENST00000618351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	8	2	3.0068	3.51013	4.01346	0.00778514	0.00341471	0.130982	0.0729529
chr1	35351213	35351311	104455	0	+	0.469388	(0.459,0.49]	chr1	11737	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZMYM4:RPL5P4	ENSG00000146463.12:ENSG00000229994.1	ENST00000314607.11:ENST00000441447.1:ENST00000434805.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	8	28	2	2.90906	3.5100450000000003	4.11103	5.8177e-6	8.64387e-8	3.4137e-4	7.5e-6
chr2	23765505	23765566	1394304	0	-	0.278689	[0,0.32]	chr2	144486	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	23	2	3.15439	3.50981	3.86523	3.74707e-5	8.69375e-9	0.00177006	8.94358e-7
chr6	157314283	157314382	4245667	0	-	0.535354	(0.526,0.57]	chr6	386012	209	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	2.38516	3.509515	4.63387	0.00834853	2.57391e-4	0.145988	0.00911512
chr4	106072627	106072727	2983110	0	-	0.47	(0.459,0.49]	chr4	279495	256	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	3.44795	3.50874	3.56953	4.08493e-5	4.86333e-6	0.00193677	2.86966e-4
chr6	43770210	43770309	3784594	0	+	0.727273	(0.629,1]	chr6	347116	1	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	90	2	3.46131	3.50854	3.55577	1.12343e-12	1e-12	1.92599e-10	1.73382e-10
chr19	40356341	40356441	9348458	0	+	0.57	(0.526,0.57]	chr19	907990	6	EXON_MRNA	EXON_MRNA:INTRON	PLD3:ENSG00000279759	ENSG00000105223.20:ENSG00000279759.1	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000622968.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC:processed_transcript	4	20	2	3.4704	3.50814	3.54588	4.12702e-5	2.75366e-5	0.00192437	0.00135076
chr11	8701876	8701973	6551546	0	-	0.57732000000000006	(0.57,0.629]	chr11	595644	15	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000534278.5:ENST00000530438.5:ENST00000526062.5:ENST00000532871.3:ENST00000533081.5:ENST00000526701.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	3.50295	3.507485	3.51202	6.5426e-4	1.40194e-5	0.0199608	7.50732e-4
chr7	27571090	27571190	4666209	0	-	0.26	[0,0.32]	chr7	419176	276	INTRON	INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2:ENST00000425715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	12	2	3.25782	3.504105	3.75039	0.00182075	7.16188e-5	0.0469284	0.0031125
chr6	30671114	30671194	4033801	0	-	0.4875	(0.459,0.49]	chr6	365360	2	CDS	CDS:EXON_MRNA	DHX16	ENSG00000204560.10	ENST00000376442.8:ENST00000415603.1	protein_coding	protein_coding	protein_coding	protein_coding	34	113	2	3.3319	3.502875	3.67385	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	152330731	152330799	3060134	0	-	0.426471	(0.424,0.459]	chr4	284039	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000296555.11:ENST00000393956.9:ENST00000603841.1:ENST00000647183.1:ENST00000604069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	50	2	2.99486	3.50271	4.01056	4.72949e-10	1e-12	5.79226e-8	1.72912e-10
chr4	22399141	22399240	2862335	0	-	0.424242	(0.392,0.424]	chr4	269767	44	INTRON	INTRON	ADGRA3	ENSG00000152990.14	ENST00000511051.5:ENST00000334304.10:ENST00000282943.9:ENST00000504617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	37	2	3.48415	3.5022	3.52025	1.71668e-7	1.47152e-11	1.4146e-5	2.21582e-9
chr11	11898683	11898781	6319910	0	+	0.367347	(0.36,0.392]	chr11	567351	6	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	14	33	2	2.86437	3.502015	4.13966	2.20046e-6	1.17436e-11	1.43122e-4	1.79779e-9
chr8	47462637	47462737	4981850	0	+	0.33	(0.32,0.36]	chr8	447053	217	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	27	2	2.80347	3.50176	4.20005	1.94746e-6	1.33735e-8	1.27217e-4	1.33922e-6
chr2	61178695	61178790	1044927	0	+	0.410526	(0.392,0.424]	chr2	111685	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHSA2P	ENSG00000173209.23	ENST00000357022.6:ENST00000463681.1:ENST00000394457.7:ENST00000489653.6:ENST00000642732.1:ENST00000643913.1:ENST00000647519.1:ENST00000642505.1:ENST00000471542.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	5	14	2	2.63664	3.501705	4.36677	0.00277883	8.10105e-6	0.0657788	4.57465e-4
chr13	97361235	97361335	7423395	0	+	0.43	(0.424,0.459]	chr13	683878	32	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	56	2	3.22482	3.5013449999999997	3.77787	2.65958e-10	1e-12	3.3747e-8	1.73382e-10
chr20	53063011	53063111	9673509	0	+	0.34	(0.32,0.36]	chr20	955958	893	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	6	13	2	2.83616	3.5004350000000004	4.16471	5.78657e-4	9.22891e-5	0.0182895	0.00388567
chrX	149940287	149940387	10234341	0	+	0.64	(0.629,1]	chrX	1019333	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000425602.2:ENST00000449111.5:ENST00000690321.1:ENST00000458274.1:ENST00000444489.5:ENST00000669126.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	3.32274	3.500435	3.67813	7.60906e-4	7.89766e-5	0.0223166	0.00339213
chr14	91293473	91293572	7897142	0	-	0.686869	(0.629,1]	chr14	727475	20	INTRON	INTRON	CCDC88C	ENSG00000015133.20	ENST00000389857.11	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.39846	3.50024	3.60202	5.39652e-4	1.20607e-4	0.0171646	0.00489816
chr1	231554620	231554694	455437	0	+	0.378378	(0.36,0.392]	chr1	49427	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TSNAX	ENSG00000116918.15	ENST00000413309.3:ENST00000602825.5:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	12	2	3.45885	3.50008	3.54131	4.24507e-4	3.17078e-4	0.0140677	0.0111061
chr2	96191571	96191670	1512932	0	-	0.373737	(0.36,0.392]	chr2	157135	36	INTRON	INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000462501.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	12	2	3.45885	3.50008	3.54131	4.24507e-4	3.17078e-4	0.0140677	0.0111061
chr3	155828209	155828309	2476370	0	-	0.34	(0.32,0.36]	chr3	237465	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC33A1	ENSG00000169359.16	ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	9	2	3.39891	3.49847	3.59803	0.00267453	0.00108651	0.0637459	0.0301638
chr17	37000071	37000171	8706072	0	+	0.48	(0.459,0.49]	chr17	824944	32	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000610798.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	3.21669	3.498315	3.77994	5.63284e-4	2.14818e-4	0.0178211	0.00789628
chrX	46465788	46465887	10120268	0	+	0.484848	(0.459,0.49]	chrX	1008991	21	INTRON	INTRON	KRBOX4	ENSG00000147121.16	ENST00000298190.10:ENST00000377919.6:ENST00000478600.5:ENST00000344302.9:ENST00000487081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.21669	3.498315	3.77994	5.63284e-4	2.14818e-4	0.0178211	0.00789628
chr3	185608551	185608648	2128812	0	+	0.350515	(0.32,0.36]	chr3	209299	17	INTRON	INTRON	SENP2	ENSG00000163904.13	ENST00000430355.5:ENST00000453532.5:ENST00000296257.10:ENST00000413407.5:ENST00000473760.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	21	2	2.67794	3.49829	4.31864	4.63564e-4	5.41613e-9	0.0152502	5.73495e-7
chr6	57121642	57121741	3797916	0	+	0.333333	(0.32,0.36]	chr6	348500	121	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000515290.5:ENST00000510483.5:ENST00000357489.7:ENST00000370702.5:ENST00000444273.6:ENST00000370711.9:ENST00000370706.9:ENST00000491832.6:ENST00000502749.1:ENST00000504603.1:ENST00000509071.5:ENST00000509251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	9	2	3.08717	3.498095	3.90902	0.00535148	5.03152e-4	0.100211	0.0161742
chr4	57104279	57104379	2909410	0	-	0.48	(0.459,0.49]	chr4	273659	388	INTRON	INTRON	IGFBP7	ENSG00000163453.11	ENST00000295666.6:ENST00000514062.2	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	3.32909	3.497785	3.66648	3.84332e-7	1.84393e-7	2.9216e-5	1.4886e-5
chr14	63712410	63712510	7847319	0	-	0.52	(0.49,0.526]	chr14	722525	134	INTRON	INTRON	SGPP1	ENSG00000126821.8	ENST00000247225.7	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	2.60562	3.497685	4.38975	0.0102832	9.92102e-4	0.170122	0.0276375
chr11	95892761	95892861	6712711	0	-	0.4	(0.392,0.424]	chr11	613384	41	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	7	2	2.84278	3.497585	4.15239	0.00949728	0.00572894	0.16275	0.105396
chr3	65978531	65978631	2325907	0	-	0.4	(0.392,0.424]	chr3	225654	710	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	7	2	2.84278	3.497585	4.15239	0.00949728	0.00572894	0.16275	0.105396
chr9	70193812	70193912	5395879	0	+	0.36	(0.32,0.36]	chr9	481902	228	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	2.97267	3.49696	4.02125	0.00701727	3.53532e-4	0.122029	0.0122629
chr7	35879181	35879279	4365916	0	+	0.346939	(0.32,0.36]	chr7	393767	30	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000634600.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000473201.2:ENST00000399035.7:ENST00000425198.1:ENST00000635420.1:ENST00000634591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	9	2	3.28365	3.49658	3.70951	0.00201951	0.00153031	0.0510613	0.0389999
chr16	30655018	30655116	8369885	0	+	0.72449	(0.629,1]	chr16	781352	5	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000564946.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2:ENST00000567322.1:ENST00000571654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.9761	3.4962999999999997	4.0165	0.00463564	4.23477e-6	0.089408	2.57151e-4
chr8	143711215	143711315	5100532	0	+	0.64	(0.629,1]	chr8	456728	4	SS5_PROX	SS5_PROX:INTRON	ZNF707	ENSG00000181135.16	ENST00000527561.5:ENST00000508587.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	28	2	2.47168	3.496085	4.52049	0.00639682	1.11072e-8	0.114061	1.11903e-6
chr1	145073446	145073546	746895	0	-	0.51	(0.49,0.526]	chr1	79985	779	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	3.41836	3.495445	3.57253	0.00136895	2.38382e-5	0.0359623	0.00119556
chr9	136807942	136808026	5527558	0	+	0.77381	(0.629,1]	chr9	497307	1	UTR5	UTR5:EXON_MRNA	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.904	3.49529	5.08658	0.0125401	5.52146e-6	0.199657	3.23814e-4
chr1	8878337	8878408	512313	0	-	0.704225	(0.629,1]	chr1	55046	2	SS5_PROX	SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000646680.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.86171	3.49507	4.12843	0.00233396	8.48224e-4	0.0563219	0.0240064
chr16	57755118	57755178	8401684	0	+	0.683333	(0.629,1]	chr16	785894	1	CDS	CDS:EXON_MRNA	KATNB1	ENSG00000140854.13	ENST00000379661.8:ENST00000566611.5:ENST00000563462.1:ENST00000569018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.86171	3.49507	4.12843	0.00233396	8.48224e-4	0.0563219	0.0240064
chr21	39499822	39499915	9815828	0	+	0.516129	(0.49,0.526]	chr21	973210	1	CDS	CDS:EXON_MRNA:INTRON	SH3BGR	ENSG00000185437.15	ENST00000380637.7:ENST00000380634.5:ENST00000458295.5:ENST00000440288.6:ENST00000380631.5:ENST00000333634.10:ENST00000452550.5:ENST00000423596.5:ENST00000447939.1	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	3.4798	3.4929300000000003	3.50606	0.0010102	3.92552e-5	0.0282228	0.00184909
chrX	154444140	154444235	10244293	0	+	0.852632	(0.629,1]	chrX	1020684	1	UTR5	UTR5:EXON_MRNA	FAM50A	ENSG00000071859.15	ENST00000393600.8:ENST00000464419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	3.14777	3.492455	3.83714	9.25723e-5	8.12471e-8	0.00389429	7.02618e-6
chr3	44639699	44639799	1855934	0	+	0.45	(0.424,0.459]	chr3	187776	67	INTRON	INTRON	ZNF197	ENSG00000186448.15	ENST00000383744.8:ENST00000344387.9:ENST00000383745.6:ENST00000334075.6:ENST00000396058.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	18	2	3.08995	3.4923599999999997	3.89477	2.5121e-4	8.61234e-6	0.00902798	4.83499e-4
chr1	205739290	205739389	846226	0	-	0.414141	(0.392,0.424]	chr1	94185	93	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	2.76656	3.491985	4.21741	0.0113141	0.00496616	0.181488	0.0964485
chr12	57420347	57420447	7182123	0	-	0.42	(0.392,0.424]	chr12	663024	242	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	2.76656	3.491985	4.21741	0.0113141	0.00496616	0.181488	0.0964485
chr21	29354318	29354417	9796886	0	+	0.40404	(0.392,0.424]	chr21	971203	83	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	7	2	2.76656	3.491985	4.21741	0.0113141	0.00496616	0.181488	0.0964485
chr10	12109510	12109610	5790358	0	+	0.54	(0.526,0.57]	chr10	521517	11	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000448829.1	protein_coding	protein_coding	protein_coding	protein_coding	22	86	2	3.4514	3.49184	3.53228	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	21721649	21721706	539590	0	-	0.333333	(0.32,0.36]	chr1	59345	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000487880.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	7	2	2.65381	3.491665	4.32952	0.0110381	0.00388505	0.179068	0.0816719
chr3	108648380	108648469	1950247	0	+	0.337079	(0.32,0.36]	chr3	196428	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DZIP3	ENSG00000198919.13	ENST00000495008.5:ENST00000361582.8:ENST00000463306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	7	2	2.65381	3.491665	4.32952	0.0110381	0.00388505	0.179068	0.0816719
chr18	23975115	23975214	9193196	0	-	0.343434	(0.32,0.36]	chr18	885999	59	INTRON	INTRON	ENSG00000265752	ENSG00000265752.3	ENST00000582300.2:ENST00000664669.1	lncRNA	lncRNA	lncRNA	lncRNA	20	43	2	3.38346	3.4892849999999997	3.59511	8.73426e-11	1.19822e-11	1.1854e-8	1.83811e-9
chr12	51137949	51138049	7165596	0	-	0.44	(0.424,0.459]	chr12	659421	124	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	26	2	3.20588	3.488955	3.77203	2.52272e-5	1.30209e-8	0.00124164	1.30611e-6
chr5	71517386	71517452	3208136	0	+	0.318182	[0,0.32]	chr5	296055	2	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	47	2	3.47531	3.488945	3.50258	6.86384e-12	1.32006e-12	1.07164e-9	2.25108e-10
chr13	113233152	113233245	7453222	0	+	0.333333	(0.32,0.36]	chr13	686439	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	13	2	3.10453	3.48856	3.87259	8.28985e-4	3.96495e-5	0.024032	0.00188516
chr12	101738881	101738981	6999689	0	+	0.45	(0.424,0.459]	chr12	639797	79	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000546873.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	9	2	2.56804	3.487015	4.40599	0.00769936	0.00154565	0.135524	0.0389999
chr18	6820362	6820462	9043639	0	+	0.47	(0.459,0.49]	chr18	874575	283	INTRON	INTRON	ARHGAP28	ENSG00000088756.13	ENST00000383472.9:ENST00000583410.1:ENST00000584387.1:ENST00000532723.5:ENST00000262227.7	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	3.32713	3.48679	3.64645	1.35758e-6	7.61714e-7	9.23483e-5	5.39655e-5
chr4	56192461	56192560	2625497	0	+	0.353535	(0.32,0.36]	chr4	251824	127	INTRON	INTRON	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000629263.3:ENST00000636006.1:ENST00000646253.1:ENST00000264229.11	protein_coding	protein_coding	protein_coding	protein_coding	7	17	2	3.29536	3.486265	3.67717	6.04067e-5	8.39038e-6	0.00268261	4.72997e-4
chr11	47326901	47326996	6394634	0	+	0.494737	(0.49,0.526]	chr11	573150	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MADD	ENSG00000110514.19	ENST00000342922.8:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000395344.7:ENST00000395336.7:ENST00000402192.6:ENST00000634938.1:ENST00000460452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	56	2	3.08975	3.485815	3.88188	5.03982e-9	1e-12	5.3754e-7	1.73382e-10
chr15	75360475	75360564	8237850	0	-	0.662921	(0.629,1]	chr15	764954	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2C1	ENSG00000140400.18	ENST00000267978.10:ENST00000563622.5:ENST00000565683.5:ENST00000569482.5:ENST00000564785.5:ENST00000563441.5:ENST00000563596.5:ENST00000566634.5:ENST00000562461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	69	2	2.79836	3.4851900000000002	4.17202	5.013e-9	1e-12	5.3679e-7	1.72912e-10
chr4	41572760	41572860	2612419	0	+	0.43	(0.424,0.459]	chr4	250104	210	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1:ENST00000503057.6:ENST00000511496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	20	2	3.29249	3.484725	3.67696	5.87704e-5	2.06956e-6	0.00266966	1.34728e-4
chr17	31094926	31095019	8694524	0	+	0.655914	(0.629,1]	chr17	823252	1	UTR5	UTR5:EXON_MRNA	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.84021	3.48432	4.12843	0.00897489	0.00233396	0.155806	0.0563219
chr5	1473068	1473165	3413791	0	-	0.670103	(0.629,1]	chr5	314177	18	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.84021	3.48432	4.12843	0.00897489	0.00233396	0.155806	0.0563219
chr1	246226024	246226124	915716	0	-	0.35	(0.32,0.36]	chr1	100961	324	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	35	2	3.46244	3.48218	3.50192	2.3727e-9	1.68528e-9	2.65753e-7	1.92412e-7
chr1	7970001	7970099	22691	0	+	0.469388	(0.459,0.49]	chr1	2200	2	INTRON	INTRON	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000460192.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000465354.5:ENST00000377491.5:ENST00000377488.5:ENST00000497113.1:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	26	2	2.66261	3.48169	4.30077	2.50961e-4	5.87352e-9	0.00902798	6.19811e-7
chr6	169668439	169668524	4279793	0	-	0.552941	(0.526,0.57]	chr6	387631	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000496752.1:ENST00000650296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	26	2	3.01669	3.48118	3.94567	2.67638e-5	3.05141e-7	0.00131425	2.36544e-5
chr7	72954097	72954177	4729157	0	-	0.55	(0.526,0.57]	chr7	423996	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	26	2	3.01669	3.48118	3.94567	2.67638e-5	3.05141e-7	0.00131425	2.36544e-5
chr12	1475743	1475843	6793164	0	+	0.36	(0.32,0.36]	chr12	620254	306	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000588412.5:ENST00000691140.1:ENST00000543151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	8	2	2.63272	3.4811199999999998	4.32952	0.00503554	0.00388505	0.0976839	0.0816719
chr1	236562738	236562835	897827	0	-	0.371134	(0.36,0.392]	chr1	100045	11	INTRON	INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	4	12	2	3.20352	3.4809799999999997	3.75844	0.0019364	6.393e-5	0.0476694	0.00282504
chr1	13753677	13753776	39669	0	+	0.535354	(0.526,0.57]	chr1	4735	38	INTRON	INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000502727.5:ENST00000502724.5:ENST00000413440.5:ENST00000343137.8:ENST00000491815.1:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	2.57946	3.480935	4.38241	0.0110174	0.00101891	0.179063	0.0276375
chr1	164630980	164631048	323471	0	+	0.544118	(0.526,0.57]	chr1	36564	1	UTR5	UTR5:EXON_MRNA:INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000498497.2:ENST00000559578.1:ENST00000560469.5:ENST00000496120.6:ENST00000468104.5:ENST00000560641.5:ENST00000474046.1:ENST00000482110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	10	2	2.57946	3.480935	4.38241	0.0110174	0.00101891	0.179063	0.0276375
chr18	23163448	23163548	9078944	0	+	0.58	(0.57,0.629]	chr18	877166	71	INTRON	INTRON	CABLES1	ENSG00000134508.13	ENST00000579963.5:ENST00000400473.6:ENST00000580153.5:ENST00000256925.12:ENST00000582882.5:ENST00000583220.5:ENST00000580644.5:ENST00000578052.1:ENST00000585061.1:ENST00000420687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	3.10805	3.4808	3.85355	3.71519e-4	5.98045e-5	0.0125602	0.00266913
chr15	39994126	39994224	7946950	0	+	0.367347	(0.36,0.392]	chr15	733948	9	INTRON	INTRON	EIF2AK4	ENSG00000128829.12	ENST00000263791.10:ENST00000560855.5:ENST00000558629.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	12	2	3.28561	3.4806600000000003	3.67571	0.0015215	9.00428e-5	0.0397018	0.00381913
chr3	141420127	141420226	2032885	0	+	0.535354	(0.526,0.57]	chr3	203118	145	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	3.15697	3.480105	3.80324	4.40938e-5	2.21846e-6	0.00203144	1.43493e-4
chr16	89285150	89285250	8622662	0	-	0.38	(0.36,0.392]	chr16	813613	62	CDS	CDS:UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000562194.1:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1:ENST00000568100.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	55	2	2.96884	3.48001	3.99118	5.8652e-12	1e-12	9.29384e-10	1.72912e-10
chr11	46953157	46953257	6391360	0	+	0.45	(0.424,0.459]	chr11	572741	46	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000522712.6:ENST00000527234.5:ENST00000531648.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	17	2	3.12644	3.4789950000000003	3.83155	2.23036e-4	1.07528e-5	0.00816414	5.78423e-4
chr11	126401730	126401829	6526062	0	+	0.464646	(0.459,0.49]	chr11	591646	81	INTRON	INTRON	ST3GAL4	ENSG00000110080.20	ENST00000534733.6:ENST00000531217.5:ENST00000227495.10:ENST00000676867.1:ENST00000678865.1:ENST00000676545.1:ENST00000444328.7:ENST00000677503.1:ENST00000677721.1:ENST00000530591.5:ENST00000534083.5:ENST00000356132.9:ENST00000528605.5:ENST00000526311.5:ENST00000528858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.31269	3.47846	3.64423	0.00308309	6.20842e-4	0.0699986	0.0191195
chr12	116983519	116983618	7030121	0	+	0.282828	[0,0.32]	chr12	643787	48	INTRON	INTRON	FBXW8	ENSG00000174989.13	ENST00000652555.1:ENST00000455858.2:ENST00000309909.10:ENST00000551773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	14	2	2.93209	3.4784050000000004	4.02472	0.00104757	8.66912e-6	0.0292314	4.85864e-4
chr19	41864354	41864445	9353364	0	+	0.494505	(0.49,0.526]	chr19	909152	3	UTR3	UTR3:EXON_MRNA:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	2.88418	3.47839	4.0726	4.05006e-4	1.93553e-5	0.0135138	9.87839e-4
chr4	41438976	41439076	2611075	0	+	0.49	(0.459,0.49]	chr4	250072	198	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.39129	3.4782200000000003	3.56515	0.00244536	8.21277e-4	0.0587626	0.0238805
chrX	47976266	47976361	10338071	0	-	0.410526	(0.392,0.424]	chrX	1026178	1	CDS	CDS:EXON_MRNA	ZNF182	ENSG00000147118.12	ENST00000376943.8:ENST00000396965.5	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	3.3308	3.4777199999999997	3.62464	6.63878e-4	1.11057e-4	0.0199616	0.00448562
chr19	52922475	52922573	9535498	0	-	0.418367	(0.392,0.424]	chr19	942857	32	INTRON	INTRON	ZNF888	ENSG00000213793.6	ENST00000638862.2:ENST00000596623.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	13	2	3.40795	3.477585	3.54722	5.07532e-4	1.52245e-4	0.0162102	0.0058275
chr11	77635890	77635990	6658661	0	-	0.45	(0.424,0.459]	chr11	610570	56	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	30	2	3.3727	3.4773	3.5819	2.06503e-7	5.55423e-8	1.66936e-5	4.89622e-6
chr12	23538059	23538158	7108487	0	-	0.393939	(0.392,0.424]	chr12	653528	10	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000396007.6:ENST00000545921.5:ENST00000367206.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	19	2	2.69037	3.4772800000000004	4.26419	5.7925e-4	2.06452e-7	0.0183593	1.64563e-5
chr7	50595136	50595236	4717179	0	-	0.59	(0.57,0.629]	chr7	422855	3	SS5_PROX	SS5_PROX:INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6:ENST00000644879.1:ENST00000406641.5:ENST00000402497.6:ENST00000357271.9:ENST00000643299.1:ENST00000407526.6:ENST00000461886.1:ENST00000645075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	9	2	3.03884	3.477185	3.91553	0.00676458	0.00651627	0.1204	0.114061
chr3	136943783	136943883	2013488	0	+	0.37	(0.36,0.392]	chr3	202187	128	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000488930.5:ENST00000496489.5:ENST00000469404.1:ENST00000467911.1	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	3.4100799999999998	3.475695	3.54131	3.17078e-4	8.21595e-6	0.0111061	4.63602e-4
chr14	75429006	75429106	7704848	0	+	0.66	(0.629,1]	chr14	708280	4	SS5_PROX	SS5_PROX:INTRON	JDP2	ENSG00000140044.13	ENST00000419727.6:ENST00000559773.5:ENST00000651602.1:ENST00000559060.5:ENST00000558068.1:ENST00000437176.5:ENST00000435893.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.76554	3.4744900000000003	4.18344	0.0112307	0.00183228	0.181488	0.0469284
chr22	20858725	20858811	9992917	0	-	0.790698	(0.629,1]	chr22	995200	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.76554	3.4744900000000003	4.18344	0.0112307	0.00183228	0.181488	0.0469284
chr3	12840333	12840429	2176537	0	-	0.572917	(0.57,0.629]	chr3	212661	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	125	2	3.46399	3.474095	3.4842	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	364707	364807	3107841	0	+	0.34	(0.32,0.36]	chr5	287793	104	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10:ENST00000652417.2:ENST00000515206.6	protein_coding	protein_coding	protein_coding	protein_coding	9	21	2	3.3435	3.472465	3.60143	2.33974e-5	3.02355e-7	0.00116109	2.31985e-5
chr7	36362740	36362839	4688599	0	-	0.464646	(0.459,0.49]	chr7	420461	48	INTRON	INTRON	KIAA0895	ENSG00000164542.13	ENST00000440378.6:ENST00000297063.10:ENST00000338533.9:ENST00000317020.10:ENST00000436884.5:ENST00000453212.5:ENST00000483360.5:ENST00000480192.5:ENST00000483526.1:ENST00000431396.1:ENST00000415803.2:ENST00000493327.1:ENST00000429651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	20	2	2.66261	3.471675	4.28074	2.50961e-4	3.57604e-6	0.00902798	2.18487e-4
chrX	53376628	53376728	10345238	0	-	0.47	(0.459,0.49]	chrX	1027334	26	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	3.30796	3.471415	3.63487	1.69661e-5	2.57785e-6	8.71289e-4	1.6148e-4
chr16	89717970	89718062	8625265	0	-	0.684783	(0.629,1]	chr16	813907	8	INTRON	INTRON	VPS9D1	ENSG00000075399.14	ENST00000389386.8:ENST00000561976.5:ENST00000563798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	90	2	3.04095	3.471045	3.90114	2.33535e-12	1e-12	3.88206e-10	1.72912e-10
chr5	59667575	59667675	3478927	0	-	0.4	(0.392,0.424]	chr5	319265	812	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	17	2	2.96229	3.47093	3.97957	2.64732e-4	4.95123e-6	0.00936619	2.96695e-4
chr14	71615367	71615466	7688483	0	+	0.363636	(0.36,0.392]	chr14	706612	167	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	3.4283	3.47032	3.51234	5.8205e-5	3.96166e-5	0.0026464	0.00188516
chr5	71509860	71509960	3208053	0	+	0.44	(0.424,0.459]	chr5	296025	5	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	74	2	2.998	3.470295	3.94259	2.15298e-11	1e-12	3.14887e-9	1.72912e-10
chr15	31719768	31719868	8119263	0	-	0.48	(0.459,0.49]	chr15	751207	299	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	2.66682	3.46983	4.27284	0.00873764	0.00227779	0.144342	0.0552099
chr15	90219207	90219304	8078559	0	+	0.463918	(0.459,0.49]	chr15	746887	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SEMA4B	ENSG00000185033.15	ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000411539.7:ENST00000560089.5:ENST00000558051.2:ENST00000558848.1:ENST00000558065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	2.66682	3.46983	4.27284	0.00873764	0.00227779	0.144342	0.0552099
chr2	127845136	127845235	1562143	0	-	0.474747	(0.459,0.49]	chr2	162142	17	UTR3	UTR3:EXON_MRNA	POLR2D	ENSG00000144231.11	ENST00000272645.9	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	2.66682	3.46983	4.27284	0.00873764	0.00227779	0.144342	0.0552099
chr16	23508621	23508721	8534861	0	-	0.53	(0.526,0.57]	chr16	802117	125	INTRON	INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000570111.5:ENST00000568799.1:ENST00000563494.5:ENST00000569300.5:ENST00000569189.2:ENST00000563047.1:ENST00000562944.5:ENST00000562117.1:ENST00000566547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	59	2	3.46457	3.46973	3.47489	1.74743e-10	1e-12	2.28358e-8	1.72912e-10
chr2	87195335	87195432	1090197	0	+	0.329897	(0.32,0.36]	chr2	116569	14	INTRON	INTRON	ENSG00000204745	ENSG00000204745.4	ENST00000454465.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	11	2	3.28365	3.4693750000000003	3.6551	0.00153031	2.11023e-4	0.0389999	0.00785
chr19	49811362	49811414	9526006	0	-	0.615385	(0.57,0.629]	chr19	941292	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FUZ	ENSG00000010361.14	ENST00000313777.9:ENST00000525130.5:ENST00000533418.5:ENST00000528094.5:ENST00000525370.5:ENST00000377092.8:ENST00000528043.5:ENST00000531017.5:ENST00000527585.5:ENST00000534008.5:ENST00000529302.1:ENST00000526575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	9	2	2.95732	3.4690000000000003	3.98068	0.00848479	0.0053729	0.140721	0.100211
chr2	1656898	1656997	1370149	0	-	0.616162	(0.57,0.629]	chr2	141796	20	INTRON	INTRON	PXDN	ENSG00000130508.11	ENST00000252804.9:ENST00000478155.5:ENST00000433670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	9	2	2.95732	3.4690000000000003	3.98068	0.00848479	0.0053729	0.140721	0.100211
chr4	165903040	165903140	2782943	0	+	0.58	(0.57,0.629]	chr4	263894	276	INTRON	INTRON	TLL1	ENSG00000038295.8	ENST00000061240.7:ENST00000509505.5:ENST00000507499.5:ENST00000504560.5:ENST00000513213.5:ENST00000506144.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	2.95732	3.4690000000000003	3.98068	0.00848479	0.0053729	0.140721	0.100211
chr8	98670703	98670803	5226722	0	-	0.6	(0.57,0.629]	chr8	467723	191	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	9	2	2.95732	3.4690000000000003	3.98068	0.00848479	0.0053729	0.140721	0.100211
chr14	66590758	66590858	7660460	0	+	0.38	(0.36,0.392]	chr14	705173	392	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	11	2	2.85081	3.46863	4.08645	0.00352888	1.23682e-4	0.0751127	0.0049353
chr8	38426183	38426245	5159807	0	-	0.532258	(0.526,0.57]	chr8	462179	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000526570.5:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000674235.1:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000682770.1:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000532386.5:ENST00000474970.1:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	64	2	3.10878	3.46833	3.82788	6.86273e-12	1e-12	1.07306e-9	1.73382e-10
chr6	135428759	135428859	4207651	0	-	0.26	[0,0.32]	chr6	382740	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AHI1	ENSG00000135541.22	ENST00000681022.1:ENST00000681841.1:ENST00000680965.1:ENST00000681522.1:ENST00000681365.1:ENST00000681332.1:ENST00000680826.1:ENST00000679711.1:ENST00000527681.2:ENST00000367800.8:ENST00000265602.11:ENST00000681718.1:ENST00000679672.1:ENST00000681828.1:ENST00000679668.1:ENST00000680840.1:ENST00000457866.6:ENST00000679925.1:ENST00000680561.1:ENST00000679742.1:ENST00000681860.1:ENST00000680119.1:ENST00000681340.1:ENST00000679589.1:ENST00000679890.1:ENST00000679434.1:ENST00000475846.6:ENST00000679943.1:ENST00000681057.1:ENST00000681301.1:ENST00000681488.1:ENST00000679450.1:ENST00000681756.1:ENST00000681670.1:ENST00000679476.1:ENST00000679622.1:ENST00000367799.7:ENST00000680656.1:ENST00000680278.1:ENST00000680184.1:ENST00000531788.5:ENST00000681945.1:ENST00000327035.10:ENST00000681477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	3.18466	3.467525	3.75039	0.00182075	6.2959e-4	0.0469284	0.0193151
chr3	142474770	142474869	2459028	0	-	0.383838	(0.36,0.392]	chr3	236115	42	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000513291.2:ENST00000654170.1:ENST00000666943.1:ENST00000666447.1:ENST00000665483.1:ENST00000661310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	11	2	2.76763	3.4671250000000002	4.16662	0.00445622	9.16296e-5	0.0875511	0.00387303
chr4	1805844	1805940	2544564	0	+	0.645833	(0.629,1]	chr4	244508	2	CDS	CDS:UTR3:EXON_MRNA	FGFR3	ENSG00000068078.20	ENST00000412135.7:ENST00000440486.8:ENST00000481110.7:ENST00000340107.8:ENST00000260795.8:ENST00000352904.6:ENST00000469068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.91389	3.4651949999999996	4.0165	5.22361e-4	4.23477e-6	0.0167376	2.57151e-4
chr8	47468136	47468236	4981905	0	+	0.37	(0.36,0.392]	chr8	447053	272	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	32	2	2.95613	3.465115	3.9741	5.06808e-8	9.72537e-9	4.59808e-6	9.91923e-7
chr19	49772982	49773082	9376572	0	+	0.65	(0.629,1]	chr19	913765	54	INTRON	INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	3.32274	3.4648950000000003	3.60705	7.60906e-4	1.39283e-6	0.0223166	9.42381e-5
chr1	174430544	174430644	352749	0	+	0.34	(0.32,0.36]	chr1	38884	360	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	16	2	2.84883	3.4646850000000002	4.08054	0.00354866	1.61702e-7	0.0776459	1.33079e-5
chr17	37604383	37604483	8920610	0	-	0.41	(0.392,0.424]	chr17	855428	35	INTRON	INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000619976.1:ENST00000620424.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	9	2	2.38155	3.46428	4.54701	0.00993679	0.00102713	0.169739	0.0276375
chr7	11152829	11152929	4310879	0	+	0.42	(0.392,0.424]	chr7	390497	410	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000634607.2:ENST00000423760.6:ENST00000470665.5:ENST00000493922.5:ENST00000469407.5:ENST00000473050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	9	2	2.38155	3.46428	4.54701	0.00993679	0.00102713	0.169739	0.0276375
chr12	132036097	132036195	7057930	0	+	0.55102	(0.526,0.57]	chr12	647307	36	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	55	2	3.2906	3.463725	3.63685	7.25746e-11	5.31331e-12	9.96319e-9	8.43726e-10
chr17	39711927	39711993	8712394	0	+	0.575758	(0.57,0.629]	chr17	825950	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000578199.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000582788.5:ENST00000582648.5:ENST00000578373.5:ENST00000584908.5:ENST00000583038.5:ENST00000578502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	58	251	2	3.2922	3.46317	3.63414	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	89559095	89559195	1508830	0	-	0.5	(0.49,0.526]	chr2	156432	41	INTRON	INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	12	2	3.41836	3.46221	3.50606	0.00136895	0.0010102	0.0359623	0.0282228
chr3	4752974	4753073	1753768	0	+	0.575758	(0.57,0.629]	chr3	179682	148	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1:ENST00000648212.1:ENST00000648016.1:ENST00000648390.1:ENST00000649144.1:ENST00000649694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	29	2	2.8722	3.46206	4.05192	8.80882e-6	1.47383e-6	4.93044e-4	9.84149e-5
chrX	24763638	24763737	10106654	0	+	0.464646	(0.459,0.49]	chrX	1007701	143	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	43	2	2.88854	3.46138	4.03422	8.28966e-8	1.45449e-11	7.16497e-6	2.20404e-9
chr15	65009373	65009473	8214969	0	-	0.41	(0.392,0.424]	chr15	761905	28	INTRON	INTRON	MTFMT	ENSG00000103707.10	ENST00000220058.9:ENST00000558460.5:ENST00000560717.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	15	2	3.10951	3.46125	3.81299	4.28069e-4	2.36886e-5	0.0141511	0.00119556
chr10	119162614	119162714	6272456	0	-	0.56	(0.526,0.57]	chr10	561182	2	SS3_PROX	SS3_PROX:INTRON	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5:ENST00000419372.5:ENST00000462913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.87462	3.460855	4.04709	4.22914e-4	2.21154e-5	0.0140492	0.00112425
chr16	69329423	69329496	8577826	0	-	0.547945	(0.526,0.57]	chr16	808763	3	SS3_PROX	SS3_PROX:INTRON	COG8:PDF	ENSG00000213380.16:ENSG00000258429.2	ENST00000562595.5:ENST00000306875.10:ENST00000288022.2	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.87462	3.460855	4.04709	4.22914e-4	2.21154e-5	0.0140492	0.00112425
chr20	63965740	63965840	9780952	0	-	0.56	(0.526,0.57]	chr20	970129	2	SS5_PROX	SS5_PROX:INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.87462	3.460855	4.04709	4.22914e-4	2.21154e-5	0.0140492	0.00112425
chr6	21596845	21596944	3732813	0	+	0.555556	(0.526,0.57]	chr6	338678	10	UTR3	UTR3:EXON_MRNA	SOX4	ENSG00000124766.7	ENST00000244745.4	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.87462	3.460855	4.04709	4.22914e-4	2.21154e-5	0.0140492	0.00112425
chr6	10576586	10576685	3705688	0	+	0.484848	(0.459,0.49]	chr6	337152	189	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	42	2	2.81976	3.4603450000000002	4.10093	1.57088e-8	5.70955e-10	1.54679e-6	6.95257e-8
chr12	105183807	105183906	7268350	0	-	0.40404	(0.392,0.424]	chr12	669513	62	INTRON	INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000553109.1:ENST00000548425.1:ENST00000547809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	35	2	2.91994	3.46026	4.00058	4.65827e-7	5.15975e-11	3.49127e-5	7.21265e-9
chr17	54941294	54941393	8743514	0	+	0.383838	(0.36,0.392]	chr17	832445	19	INTRON	INTRON	TOM1L1	ENSG00000141198.16	ENST00000445275.6:ENST00000348161.8:ENST00000576932.5:ENST00000572158.5:ENST00000575882.6:ENST00000571319.5:ENST00000536554.5:ENST00000572905.1:ENST00000574653.1:ENST00000574318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	30	2	3.20396	3.459975	3.71599	1.29838e-7	1.36784e-8	1.08605e-5	1.36518e-6
chr11	110253945	110254027	6740062	0	-	0.451219	(0.424,0.459]	chr11	614676	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000529774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	80	211	2	3.29231	3.45987	3.62743	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	42564175	42564265	8717816	0	+	0.622222	(0.57,0.629]	chr17	827227	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COASY	ENSG00000068120.15	ENST00000421097.6:ENST00000393818.3:ENST00000591779.5:ENST00000590958.5:ENST00000591753.1:ENST00000588353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.6312	3.4592650000000003	4.28733	0.00652833	8.34421e-7	0.116779	5.98026e-5
chr12	132035407	132035506	7057923	0	+	0.494949	(0.49,0.526]	chr12	647307	29	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	24	2	2.4154	3.458885	4.50237	3.98466e-4	1.72026e-7	0.0136799	1.41598e-5
chr12	19283558	19283651	6837893	0	+	0.44086	(0.424,0.459]	chr12	624828	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000424268.5:ENST00000536974.5:ENST00000510738.2:ENST00000538677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	22	2	3.23946	3.45821	3.67696	1.17245e-5	2.06956e-6	6.46173e-4	1.34728e-4
chr12	122620566	122620608	7039903	0	+	0.452381	(0.424,0.459]	chr12	645497	1	CDS_START	CDS_START:CDS:EXON_MRNA	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000534995.1	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	3.23804	3.4574999999999996	3.67696	0.00649971	2.06956e-6	0.114061	1.34728e-4
chr22	38314157	38314169	10035356	0	-	0.583333	(0.57,0.629]	chr22	1000300	1	UTR5	UTR5:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000403904.5:ENST00000413574.6:ENST00000405675.7:ENST00000430335.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.6558	3.45691	4.25802	0.0011074	1.55189e-6	0.0296131	1.02479e-4
chr12	112418906	112418974	7025214	0	+	0.779412	(0.629,1]	chr12	643031	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PTPN11	ENSG00000179295.19	ENST00000531326.1:ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.9761	3.45615	3.9362	0.0052327	0.00463564	0.0992178	0.089408
chr17	43269256	43269356	8938154	0	-	0.55	(0.526,0.57]	chr17	859071	391	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	30	114	2	3.18647	3.4558299999999997	3.72519	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	122517730	122517830	7308927	0	-	0.34	(0.32,0.36]	chr12	674973	3	SS3_PROX	SS3_PROX:INTRON	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000525335.6:ENST00000344591.8:ENST00000528263.1:ENST00000527399.3:ENST00000527796.6:ENST00000526560.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	7	2	3.31131	3.45467	3.59803	0.0111187	0.00267453	0.179068	0.0637459
chr3	65932159	65932259	2325443	0	-	0.36	(0.32,0.36]	chr3	225654	246	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	7	2	3.31131	3.45467	3.59803	0.0111187	0.00267453	0.179068	0.0637459
chr3	120090849	120090948	2402582	0	-	0.323232	(0.32,0.36]	chr3	230182	46	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	7	2	3.31131	3.45467	3.59803	0.0111187	0.00267453	0.179068	0.0637459
chr17	30259426	30259526	8906384	0	-	0.57	(0.526,0.57]	chr17	853515	93	INTRON	INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	2.83139	3.45453	4.07767	0.00403601	0.00350122	0.0817225	0.0746524
chr21	46256338	46256437	9835094	0	+	0.616162	(0.57,0.629]	chr21	975881	46	INTRON	INTRON	MCM3AP-AS1	ENSG00000215424.10	ENST00000590829.5	lncRNA	lncRNA	lncRNA	lncRNA	7	37	2	2.80669	3.4539549999999997	4.10122	9.15468e-5	3.13459e-11	0.00387303	4.5174e-9
chr11	73729927	73730020	6646554	0	-	0.526882	(0.526,0.57]	chr11	609099	6	EXON_MRNA	EXON_MRNA:INTRON	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	18	2	2.70959	3.4524549999999996	4.19532	0.00126833	5.88525e-6	0.0335079	3.44579e-4
chr1	12599599	12599699	520819	0	-	0.49	(0.459,0.49]	chr1	56283	34	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr1	117477693	117477792	272424	0	+	0.484848	(0.459,0.49]	chr1	28115	109	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr1	150304547	150304647	293431	0	+	0.47	(0.459,0.49]	chr1	30971	97	INTRON	INTRON	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr10	32705246	32705345	5832222	0	+	0.474747	(0.459,0.49]	chr10	524238	99	INTRON	INTRON	CCDC7	ENSG00000216937.14	ENST00000639629.2:ENST00000375025.10:ENST00000302316.12:ENST00000639290.1:ENST00000375028.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr10	51164929	51165029	5850396	0	+	0.46	(0.459,0.49]	chr10	526055	112	INTRON	INTRON	PRKG1	ENSG00000185532.20	ENST00000401604.8:ENST00000645324.1:ENST00000373980.11:ENST00000643582.1:ENST00000643704.1:ENST00000373976.9	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr10	102368217	102368296	5963231	0	+	0.481013	(0.459,0.49]	chr10	535403	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678585.1:ENST00000679305.1:ENST00000678007.1:ENST00000678453.1:ENST00000677917.1:ENST00000678604.1:ENST00000677607.1:ENST00000677098.1:ENST00000678722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr11	134172431	134172531	6782882	0	-	0.49	(0.459,0.49]	chr11	619382	30	INTRON	INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688834.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000530396.2:ENST00000525432.2:ENST00000687155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr12	42338454	42338553	6881073	0	+	0.464646	(0.459,0.49]	chr12	627917	21	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000549774.5:ENST00000551723.5:ENST00000552429.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000550535.5:ENST00000546750.5:ENST00000547847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr12	62559324	62559421	6931646	0	+	0.484536	(0.459,0.49]	chr12	634472	28	INTRON	INTRON	MON2	ENSG00000061987.16	ENST00000641654.1:ENST00000546600.5:ENST00000393630.8:ENST00000547095.5:ENST00000552738.5:ENST00000393629.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr12	105039712	105039806	7267536	0	-	0.478723	(0.459,0.49]	chr12	669388	1	CDS	CDS:UTR3:EXON_MRNA	ALDH1L2	ENSG00000136010.14	ENST00000549335.5:ENST00000258494.14:ENST00000652515.1:ENST00000552270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr15	49013610	49013708	8156480	0	-	0.469388	(0.459,0.49]	chr15	756337	4	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr17	9459664	9459764	8868702	0	-	0.48	(0.459,0.49]	chr17	848803	219	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr17	57641466	57641566	8752328	0	+	0.48	(0.459,0.49]	chr17	833081	84	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr2	11220697	11220797	1380685	0	-	0.47	(0.459,0.49]	chr2	143117	1	SS5_PROX	SS5_PROX:INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5:ENST00000261535.7:ENST00000484951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr2	159144654	159144754	1190286	0	+	0.47	(0.459,0.49]	chr2	125142	80	INTRON	INTRON	TANC1	ENSG00000115183.15	ENST00000263635.8:ENST00000464096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr5	140250349	140250449	3622027	0	-	0.47	(0.459,0.49]	chr5	328838	39	INTRON	INTRON	PFDN1	ENSG00000113068.10	ENST00000261813.9:ENST00000514611.1:ENST00000510217.1:ENST00000512707.1:ENST00000524074.1:ENST00000512925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr6	3744126	3744225	3995203	0	-	0.464646	(0.459,0.49]	chr6	361887	46	INTRON	INTRON	PXDC1	ENSG00000168994.14	ENST00000477592.2:ENST00000380283.5:ENST00000485986.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr6	56892033	56892133	4094841	0	-	0.46	(0.459,0.49]	chr6	373154	401	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000680361.1:ENST00000449297.6:ENST00000650917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr7	100548022	100548122	4491617	0	+	0.48	(0.459,0.49]	chr7	404255	81	INTRON	INTRON	AGFG2	ENSG00000106351.13	ENST00000300176.9:ENST00000430857.5:ENST00000477022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chrX	74128310	74128410	10375631	0	-	0.49	(0.459,0.49]	chrX	1030018	161	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1	lncRNA	lncRNA	lncRNA	lncRNA	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chrX	154416564	154416663	10244054	0	+	0.464646	(0.459,0.49]	chrX	1020572	20	INTRON	INTRON	TAFAZZIN	ENSG00000102125.16	ENST00000613634.4:ENST00000601016.6:ENST00000612460.5:ENST00000613002.4:ENST00000652682.1:ENST00000475699.6:ENST00000615986.4:ENST00000617701.5:ENST00000620808.4:ENST00000615658.5:ENST00000614595.2:ENST00000612012.5:ENST00000652476.1:ENST00000369776.8:ENST00000652685.1:ENST00000439735.2:ENST00000616020.5:ENST00000652358.1:ENST00000652390.1:ENST00000483674.3:ENST00000426231.5:ENST00000483780.5:ENST00000476679.5:ENST00000652354.1:ENST00000470127.2:ENST00000652644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	7	2	3.08436	3.45074	3.81712	0.0120499	0.00939464	0.184357	0.161654
chr3	172664496	172664596	2497710	0	-	0.5	(0.49,0.526]	chr3	239091	160	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	2.51181	3.4504850000000005	4.38916	5.23243e-4	6.34142e-7	0.0167021	4.61699e-5
chr6	87255344	87255443	3830215	0	+	0.353535	(0.32,0.36]	chr6	350945	8	CDS	CDS:EXON_MRNA:INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	3.10453	3.4498800000000003	3.79523	8.28985e-4	4.52264e-6	0.024032	2.71924e-4
chr11	65121591	65121644	6624680	0	-	0.584906	(0.57,0.629]	chr11	605674	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAU	ENSG00000149806.11	ENST00000529639.6:ENST00000531743.5:ENST00000527548.5:ENST00000525297.5:ENST00000531357.1:ENST00000279259.7:ENST00000529259.1:ENST00000526555.5:ENST00000434372.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	3.42043	3.448765	3.4771	9.02612e-4	2.57549e-5	0.0258498	0.00126626
chr4	183886119	183886219	2805988	0	+	0.5	(0.49,0.526]	chr4	265321	319	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	35	2	3.11399	3.4486049999999997	3.78322	1.84284e-7	3.29587e-8	1.48809e-5	3.08405e-6
chr6	56614419	56614484	4092005	0	-	0.338462	(0.32,0.36]	chr6	372948	2	CDS	CDS:EXON_MRNA	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5	protein_coding	protein_coding	protein_coding	protein_coding	25	52	2	3.27499	3.44822	3.62145	4.8187e-11	1e-12	6.77519e-9	1.72912e-10
chr19	43971955	43972054	9356010	0	+	0.343434	(0.32,0.36]	chr19	909825	35	INTRON	INTRON	ZNF155	ENSG00000204920.11	ENST00000590411.5	protein_coding	protein_coding	protein_coding	protein_coding	12	27	2	2.91786	3.4482	3.97854	3.31051e-5	2.91328e-10	0.00159339	3.64272e-8
chr15	88905733	88905833	8270827	0	-	0.62	(0.57,0.629]	chr15	767943	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	MFGE8	ENSG00000140545.16	ENST00000268150.13:ENST00000558018.5:ENST00000558029.6:ENST00000695566.1:ENST00000268151.11:ENST00000566497.5:ENST00000695774.1:ENST00000542878.5:ENST00000613965.1:ENST00000695567.1:ENST00000695568.1:ENST00000695569.1:ENST00000695570.1:ENST00000559259.1:ENST00000559997.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	3.20738	3.448125	3.68887	0.00279229	1.98886e-4	0.064521	0.00746609
chr17	43255158	43255258	8938013	0	-	0.61	(0.57,0.629]	chr17	859071	250	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.20738	3.448125	3.68887	0.00279229	1.98886e-4	0.064521	0.00746609
chr10	84146194	84146291	5919774	0	+	0.463918	(0.459,0.49]	chr10	530678	8	INTRON	INTRON	GHITM	ENSG00000165678.22	ENST00000691609.1:ENST00000372134.6:ENST00000690587.1:ENST00000686583.1:ENST00000690067.1:ENST00000691751.1:ENST00000687085.1:ENST00000692871.1:ENST00000691155.1:ENST00000690920.1:ENST00000688802.1:ENST00000686247.1:ENST00000690283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	3.12648	3.447955	3.76943	1.31261e-4	4.60418e-6	0.00527452	2.71998e-4
chr8	144620193	144620293	5310630	0	-	0.59	(0.57,0.629]	chr8	475266	141	INTRON	INTRON	ARHGAP39	ENSG00000147799.12	ENST00000377307.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	3.28948	3.447755	3.60603	0.00212278	2.87788e-4	0.0532704	0.0101506
chr6	130051328	130051408	3882525	0	+	0.4375	(0.424,0.459]	chr6	354835	2	CDS	CDS:EXON_MRNA	L3MBTL3	ENSG00000198945.8	ENST00000361794.7:ENST00000526087.5:ENST00000533560.5:ENST00000528385.5:ENST00000368139.6:ENST00000526019.5:ENST00000368136.3	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	3.22652	3.4467999999999996	3.66708	1.43888e-4	2.93273e-9	0.00569484	3.24282e-7
chr22	25354395	25354495	9997862	0	-	0.55	(0.526,0.57]	chr22	996036	4	SS5_PROX	SS5_PROX:INTRON	LRP5L	ENSG00000100068.14	ENST00000467672.5:ENST00000444995.7:ENST00000650168.1:ENST00000402785.2:ENST00000650500.2:ENST00000474163.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	10	2	2.75687	3.446565	4.13626	0.00442955	0.00339748	0.0875511	0.0728314
chr16	21435150	21435250	8529961	0	-	0.46	(0.459,0.49]	chr16	801362	37	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	17	2	3.32099	3.44526	3.56953	2.2051e-4	4.08493e-5	0.00809052	0.00193677
chr19	7839332	7839432	9277421	0	+	0.56	(0.526,0.57]	chr19	895571	86	INTRON	INTRON	EVI5L	ENSG00000142459.9	ENST00000538904.7:ENST00000270530.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	3.40949	3.44516	3.48083	0.00141136	0.00110295	0.0368074	0.0304129
chrX	73821044	73821143	10373417	0	-	0.40404	(0.392,0.424]	chrX	1029941	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1	lncRNA	lncRNA	lncRNA	lncRNA	7	19	2	3.26478	3.4447099999999997	3.62464	1.11057e-4	2.82806e-6	0.00448562	1.7804e-4
chr1	170541525	170541621	337916	0	+	0.416667	(0.392,0.424]	chr1	37701	3	EXON_MRNA	EXON_MRNA:INTRON	GORAB	ENSG00000120370.14	ENST00000685976.1:ENST00000686870.1:ENST00000685515.1:ENST00000688499.1:ENST00000688688.1:ENST00000687880.1:ENST00000692875.1:ENST00000367762.2:ENST00000692234.1:ENST00000691235.1:ENST00000690898.1:ENST00000689173.1:ENST00000498166.6:ENST00000367763.8:ENST00000687370.1:ENST00000693173.1:ENST00000690124.1:ENST00000693373.1:ENST00000692855.1:ENST00000691199.1:ENST00000498600.2:ENST00000684929.1:ENST00000691051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	13	2	3.07609	3.44454	3.81299	0.00280132	2.36886e-5	0.0645347	0.00119556
chr1	21085843	21085943	536851	0	-	0.49	(0.459,0.49]	chr1	59072	205	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000463775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr14	103561505	103561598	7918141	0	-	0.483871	(0.459,0.49]	chr14	730162	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG5	ENSG00000166170.12	ENST00000445922.2:ENST00000299204.6:ENST00000337322.5	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr16	15722554	15722649	8336318	0	+	0.484211	(0.459,0.49]	chr16	776505	5	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000572967.1:ENST00000572503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr17	2295950	2296049	8843431	0	-	0.474747	(0.459,0.49]	chr17	844190	26	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr17	39473662	39473762	8710729	0	+	0.48	(0.459,0.49]	chr17	825622	15	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr2	46971586	46971686	1020355	0	+	0.48	(0.459,0.49]	chr2	109923	127	INTRON	INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr21	41178875	41178975	9816727	0	+	0.49	(0.459,0.49]	chr21	973271	99	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr3	175232138	175232237	2098636	0	+	0.474747	(0.459,0.49]	chr3	206545	137	INTRON	INTRON	NAALADL2	ENSG00000177694.16	ENST00000485853.5:ENST00000454872.6:ENST00000473253.5:ENST00000489299.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr6	656298	656389	3984391	0	-	0.483516	(0.459,0.49]	chr6	361347	2	CDS	CDS:EXON_MRNA:INTRON	EXOC2:HUS1B	ENSG00000112685.14:ENSG00000188996.5	ENST00000230449.9:ENST00000443083.5:ENST00000380907.3	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr7	121371299	121371361	4829800	0	-	0.467742	(0.459,0.49]	chr7	432685	1	CDS	CDS:EXON_MRNA	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	1	7	2	3.00648	3.4444749999999997	3.88247	0.0112903	0.0104144	0.181488	0.170122
chr10	91449451	91449551	5934030	0	+	0.41	(0.392,0.424]	chr10	532109	237	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	3.15287	3.444115	3.73536	0.00224427	3.4035e-5	0.0552099	0.0016098
chr1	153981905	153982001	770104	0	-	0.427083	(0.424,0.459]	chr1	84479	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAB13	ENSG00000143545.10	ENST00000614713.4:ENST00000368575.5:ENST00000462680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	27	2	3.41142	3.44398	3.47654	8.06573e-7	2.97629e-7	5.78931e-5	2.28522e-5
chr15	22558190	22558290	7923544	0	+	0.51	(0.49,0.526]	chr15	731159	7	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	12	2	3.16684	3.443715	3.72059	0.00470616	2.73826e-4	0.0901733	0.00975361
chr3	31696601	31696701	2223430	0	-	0.45	(0.424,0.459]	chr3	215309	121	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1:ENST00000467598.5:ENST00000472175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	27	2	3.20362	3.4436799999999996	3.68374	2.36675e-6	9.50035e-8	1.53369e-4	8.12845e-6
chr2	111460916	111461016	1545454	0	-	0.52	(0.49,0.526]	chr2	160173	132	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	2	12	2	3.25397	3.44322	3.63247	0.00365962	3.91053e-4	0.0766409	0.0131535
chr10	114136147	114136246	6256740	0	-	0.353535	(0.32,0.36]	chr10	560095	1	CDS	CDS:EXON_MRNA	CCDC186	ENSG00000165813.20	ENST00000369287.8:ENST00000648613.1:ENST00000428953.1	protein_coding	protein_coding	protein_coding	protein_coding	7	17	2	3.28365	3.44254	3.60143	0.00153031	3.02355e-7	0.0389999	2.31985e-5
chr3	4802386	4802485	1754282	0	+	0.484848	(0.459,0.49]	chr3	179744	14	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1:ENST00000648212.1:ENST00000648016.1:ENST00000648390.1:ENST00000649144.1:ENST00000649694.1:ENST00000467545.6:ENST00000650139.1:ENST00000649767.1:ENST00000650074.1:ENST00000463980.6:ENST00000493491.6:ENST00000490572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	21	2	2.77363	3.44233	4.11103	0.00152008	8.64387e-8	0.0397018	7.5e-6
chr1	151267243	151267343	297829	0	+	0.54	(0.526,0.57]	chr1	31878	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000445776.1:ENST00000427779.5:ENST00000453615.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	54	2	2.88691	3.441735	3.99656	6.4906e-7	1e-12	4.6956e-5	1.73382e-10
chr9	120489583	120489679	5713197	0	-	0.270833	[0,0.32]	chr9	512184	18	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	29	2	3.04867	3.4409099999999997	3.83315	2.98198e-6	4.31845e-10	1.84037e-4	5.33708e-8
chr3	111082267	111082367	1950864	0	+	0.44	(0.424,0.459]	chr3	196552	46	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000491525.5:ENST00000461477.5:ENST00000485303.6:ENST00000319792.7:ENST00000486596.5:ENST00000493615.5:ENST00000488016.1:ENST00000470618.1:ENST00000481766.1:ENST00000478327.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	3.23804	3.439225	3.64041	0.00649971	0.00115507	0.114061	0.0316008
chr7	6389455	6389553	4301381	0	+	0.44898	(0.424,0.459]	chr7	389824	18	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000696666.1:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	9	2	3.23804	3.439225	3.64041	0.00649971	0.00115507	0.114061	0.0316008
chr7	133594946	133595046	4554200	0	+	0.45	(0.424,0.459]	chr7	409410	177	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	9	2	3.23804	3.439225	3.64041	0.00649971	0.00115507	0.114061	0.0316008
chrX	73828967	73829067	10373497	0	-	0.44	(0.424,0.459]	chrX	1029946	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5:ENST00000445814.2	lncRNA	lncRNA	lncRNA	lncRNA	2	9	2	3.23804	3.439225	3.64041	0.00649971	0.00115507	0.114061	0.0316008
chr9	70214396	70214496	5396085	0	+	0.47	(0.459,0.49]	chr9	481902	434	INTRON	INTRON	MAMDC2	ENSG00000165072.10	ENST00000377182.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.39129	3.43887	3.48645	0.00244536	6.16705e-5	0.0587626	0.00276144
chr22	29545338	29545436	10009930	0	-	0.459184	(0.424,0.459]	chr22	997004	3	INTRON	INTRON	THOC5	ENSG00000100296.14	ENST00000490103.6:ENST00000397871.5:ENST00000397872.5:ENST00000442555.5:ENST00000358079.8:ENST00000397873.6:ENST00000475187.5:ENST00000440771.5:ENST00000428374.5:ENST00000414902.5:ENST00000418021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.3314	3.43885	3.5463	0.00517898	0.00153741	0.0992178	0.0389999
chr3	197920971	197921070	2537696	0	-	0.434343	(0.424,0.459]	chr3	243470	47	INTRON	INTRON	IQCG	ENSG00000114473.14	ENST00000265239.11:ENST00000455191.5:ENST00000490748.5:ENST00000453254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.3314	3.43885	3.5463	0.00517898	0.00153741	0.0992178	0.0389999
chr1	236835346	236835446	463672	0	+	0.5	(0.49,0.526]	chr1	50069	4	SS3_PROX	SS3_PROX:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	12	2	2.71913	3.438135	4.15714	0.00319561	0.00122099	0.0699484	0.0323167
chr7	131449088	131449188	4550270	0	+	0.36	(0.32,0.36]	chr7	409285	28	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	2.96554	3.43728	3.90902	0.00254567	5.03152e-4	0.0610271	0.0161742
chr17	5431289	5431386	8637782	0	+	0.525773	(0.49,0.526]	chr17	816021	32	UTR3	UTR3:EXON_MRNA:INTRON	RPAIN	ENSG00000129197.15	ENST00000573577.5:ENST00000571558.5:ENST00000575599.5:ENST00000571043.5:ENST00000571613.5:ENST00000539417.6:ENST00000381208.9:ENST00000536255.6:ENST00000327154.10:ENST00000381209.8:ENST00000575112.5:ENST00000573126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	3.16684	3.436915	3.70699	0.00470616	6.7032e-6	0.0901733	3.89775e-4
chr19	50384296	50384390	9378426	0	+	0.723404	(0.629,1]	chr19	914220	2	UTR5	UTR5:EXON_MRNA	POLD1	ENSG00000062822.16	ENST00000600859.5:ENST00000600746.2:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.53295	3.43597	4.33899	0.00110765	8.51164e-4	0.0305163	0.0245129
chr1	108610199	108610298	249360	0	+	0.414141	(0.392,0.424]	chr1	25206	36	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr1	204438534	204438634	842529	0	-	0.4	(0.392,0.424]	chr1	93652	2	SS5_PROX	SS5_PROX:INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000683234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr1	227096391	227096491	874976	0	-	0.41	(0.392,0.424]	chr1	97517	40	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000442054.5:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr10	96557058	96557158	6218385	0	-	0.4	(0.392,0.424]	chr10	556171	36	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr18	63418049	63418149	9247844	0	-	0.41	(0.392,0.424]	chr18	890245	61	INTRON	INTRON	VPS4B	ENSG00000119541.10	ENST00000238497.10:ENST00000588059.5:ENST00000591475.5:ENST00000589604.5:ENST00000591519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr5	130114450	130114550	3313579	0	+	0.4	(0.392,0.424]	chr5	304020	619	INTRON	INTRON	CHSY3	ENSG00000198108.4	ENST00000305031.5:ENST00000507545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	8	2	3.39796	3.43491	3.47186	0.00439831	0.00366403	0.0875511	0.0766409
chr1	116053470	116053570	268895	0	+	0.44	(0.424,0.459]	chr1	27645	157	INTRON	INTRON	SLC22A15	ENSG00000163393.13	ENST00000369503.9	protein_coding	protein_coding	protein_coding	protein_coding	14	40	2	3.23979	3.4349	3.63001	2.75112e-8	4.33539e-11	2.5922e-6	6.10806e-9
chr12	49402285	49402384	6903288	0	+	0.424242	(0.392,0.424]	chr12	629135	148	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	8	2	2.71627	3.43433	4.15239	0.00572894	0.00513884	0.105396	0.0992178
chr10	14541485	14541584	6061597	0	-	0.636364	(0.629,1]	chr10	543662	63	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000378470.5:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000481209.5:ENST00000492700.5:ENST00000496330.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000494865.5:ENST00000475786.5:ENST00000488576.5:ENST00000474143.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	3.32274	3.4339	3.54506	7.60906e-4	2.07184e-4	0.0223166	0.00773072
chr4	56505790	56505862	2627613	0	+	0.763889	(0.629,1]	chr4	252084	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ARL9	ENSG00000196503.5	ENST00000360096.3:ENST00000640821.3	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.39846	3.433795	3.46913	5.39652e-4	3.04018e-4	0.0171646	0.0105767
chr5	10250993	10251093	3119681	0	+	0.56	(0.526,0.57]	chr5	288919	1	SS5_PROX	SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000508451.1:ENST00000423695.6:ENST00000512975.5:ENST00000510326.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	100	2	3.43029	3.43357	3.43685	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	237603107	237603207	470209	0	+	0.42	(0.392,0.424]	chr1	50403	6	INTRON	INTRON	RYR2	ENSG00000198626.18	ENST00000366574.7	protein_coding	protein_coding	protein_coding	protein_coding	93	215	2	3.38409	3.4332849999999997	3.48248	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	44477590	44477670	2252742	0	-	0.8	(0.629,1]	chr3	217476	1	UTR5	UTR5:EXON_MRNA	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.47168	3.4330600000000002	4.39444	0.00639682	6.41849e-4	0.114061	0.0196462
chrX	43858411	43858511	10331232	0	-	0.48	(0.459,0.49]	chrX	1025638	134	INTRON	INTRON	MAOB	ENSG00000069535.14	ENST00000378069.5:ENST00000487544.1:ENST00000468431.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.00648	3.432925	3.85937	0.0112903	1.54766e-4	0.181488	0.00599593
chr20	321581	321679	9690331	0	-	0.489796	(0.459,0.49]	chr20	958270	49	EXON_LNCRNA	EXON_LNCRNA:INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1:ENST00000414676.6:ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	2	11	2	3.08436	3.43215	3.77994	0.00939464	2.14818e-4	0.161654	0.00789628
chr12	123511763	123511863	7314343	0	-	0.51	(0.49,0.526]	chr12	675726	119	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	3.12681	3.431875	3.73694	8.09548e-5	3.40684e-6	0.00346783	2.10826e-4
chr13	48427431	48427531	7376571	0	+	0.51	(0.49,0.526]	chr13	681714	456	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	19	67	2	2.71894	3.431385	4.14383	1.12373e-9	1e-12	1.3178e-7	1.72912e-10
chr9	136504844	136504931	5767760	0	-	0.62069	(0.57,0.629]	chr9	518586	3	CDS	CDS:UTR3:EXON_MRNA	NOTCH1	ENSG00000148400.13	ENST00000679595.1:ENST00000651671.1:ENST00000681454.1:ENST00000680668.1:ENST00000681135.1:ENST00000680218.1:ENST00000680778.1:ENST00000680924.1:ENST00000680133.1:ENST00000681298.1:ENST00000645828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	51	2	3.40915	3.43121	3.45327	2.16493e-9	1.14385e-10	2.43244e-7	1.53864e-8
chr14	102084998	102085098	7914958	0	-	0.45	(0.424,0.459]	chr14	729699	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AA1	ENSG00000080824.19	ENST00000216281.13:ENST00000334701.11:ENST00000554401.1:ENST00000553585.5:ENST00000555662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	121	311	2	3.3376	3.4311	3.5246	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	28158033	28158133	6356362	0	+	0.48	(0.459,0.49]	chr11	569643	124	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.91928	3.4304050000000004	3.94153	0.00264065	1.39656e-8	0.063308	1.38361e-6
chr13	102862907	102863005	7442863	0	+	0.387755	(0.36,0.392]	chr13	685231	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ERCC5	ENSG00000134899.24	ENST00000651002.1:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1:ENST00000651387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	13	2	3.26068	3.4303	3.59992	0.00266188	3.54851e-5	0.0631592	0.00167759
chr3	183060018	183060117	2506146	0	-	0.353535	(0.32,0.36]	chr3	239815	22	INTRON	INTRON	MCCC1	ENSG00000078070.14	ENST00000492597.5:ENST00000265594.9:ENST00000629669.2:ENST00000497830.5:ENST00000497959.5:ENST00000495767.5:ENST00000476176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	19	2	2.98798	3.42983	3.87168	4.39493e-4	1.02944e-7	0.0145031	8.74275e-6
chr4	15536919	15536997	2578193	0	+	0.371795	(0.36,0.392]	chr4	247489	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CC2D2A	ENSG00000048342.18	ENST00000503292.6:ENST00000676337.1:ENST00000512702.6:ENST00000424120.6:ENST00000513811.5:ENST00000389652.11:ENST00000506643.5:ENST00000674945.1:ENST00000650860.2:ENST00000651385.1:ENST00000634028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	12	2	2.77286	3.4296550000000003	4.08645	0.00178276	1.23682e-4	0.0462639	0.0049353
chr1	215596570	215596670	431156	0	+	0.37	(0.36,0.392]	chr1	46389	7	INTRON	INTRON	KCTD3	ENSG00000136636.13	ENST00000259154.9	protein_coding	protein_coding	protein_coding	protein_coding	19	44	2	2.91521	3.4290599999999998	3.94291	3.32952e-7	1e-12	2.56701e-5	1.72912e-10
chr12	51143042	51143142	7165647	0	-	0.43	(0.424,0.459]	chr12	659421	175	INTRON	INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	26	2	3.2807	3.42852	3.57634	3.8234e-6	2.14921e-7	2.3279e-4	1.7005e-5
chr15	23033324	23033423	8107325	0	-	0.545455	(0.526,0.57]	chr15	749874	1	INTRON	INTRON	TUBGCP5	ENSG00000275835.5	ENST00000614508.4:ENST00000615383.5:ENST00000620435.4:ENST00000612085.4:ENST00000622507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	3.04579	3.427855	3.80992	0.00107756	1.14789e-4	0.0299955	0.00467969
chr12	23427	23526	7062142	0	-	0.555556	(0.526,0.57]	chr12	648008	46	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	12	2	3.15803	3.426635	3.69524	0.00482649	3.03531e-4	0.0920354	0.0107298
chrX	73820747	73820846	10373414	0	-	0.383838	(0.36,0.392]	chrX	1029941	2	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1	lncRNA	lncRNA	lncRNA	lncRNA	6	15	2	2.90552	3.4263250000000003	3.94713	6.04072e-4	1.25643e-5	0.0189985	6.61709e-4
chr13	114324526	114324623	7456903	0	+	0.556701	(0.526,0.57]	chr13	687022	7	CDS	CDS:EXON_MRNA:INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000361283.4:ENST00000646155.1:ENST00000643483.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	3.1573	3.42627	3.69524	4.45312e-4	3.03531e-4	0.0146627	0.0107298
chr1	197159736	197159828	829412	0	-	0.347826	(0.32,0.36]	chr1	92093	4	CDS	CDS:UTR3:EXON_MRNA	ZBTB41	ENSG00000177888.8	ENST00000367405.5:ENST00000467322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	9	2	3.31131	3.42533	3.53935	0.0111187	3.19299e-4	0.179068	0.010926
chr9	113409609	113409668	5699283	0	-	0.508475	(0.49,0.526]	chr9	511390	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1:ENST00000475080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	35	126	2	3.41264	3.4249650000000003	3.43729	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	36296582	36296676	109288	0	+	0.382979	(0.36,0.392]	chr1	12501	1	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	46	96	2	3.28125	3.42438	3.56751	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	220627223	220627323	434975	0	+	0.47	(0.459,0.49]	chr1	46756	81	INTRON	INTRON	MARK1	ENSG00000116141.17	ENST00000366917.6:ENST00000402574.5:ENST00000611084.4:ENST00000366918.8:ENST00000677505.1:ENST00000677041.1:ENST00000678353.1:ENST00000677173.1:ENST00000678922.1:ENST00000676500.1:ENST00000679033.1:ENST00000678435.1:ENST00000678409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	41	2	3.21854	3.424165	3.62979	1.17678e-8	7.93982e-10	1.18336e-6	9.49775e-8
chr11	65440846	65440946	6416049	0	+	0.36	(0.32,0.36]	chr11	577189	182	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000691530.1:ENST00000693747.1	lncRNA	lncRNA	lncRNA	lncRNA	169	325	2	3.33726	3.4240250000000003	3.51079	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	143574087	143574140	2463961	0	-	0.584906	(0.57,0.629]	chr3	236440	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC9A9	ENSG00000181804.15	ENST00000316549.11:ENST00000483124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	63	2	3.35434	3.42368	3.49302	1.84591e-11	1.54476e-12	2.73328e-9	2.59983e-10
chrX	119659303	119659403	10415661	0	-	0.43	(0.424,0.459]	chrX	1033258	59	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	19	2	2.70259	3.421315	4.14004	0.00129645	2.32947e-7	0.0346786	1.87449e-5
chr17	19965420	19965519	8893984	0	-	0.414141	(0.392,0.424]	chr17	851704	20	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5:ENST00000571858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	17	2	3.37639	3.42023	3.46407	7.3655e-5	2.50033e-5	0.00317841	0.0012382
chr22	21417370	21417465	9900204	0	+	0.778947	(0.629,1]	chr22	983045	1	UTR5	UTR5:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.15981	3.41897	3.67813	0.00188809	7.89766e-5	0.0466341	0.00339213
chr19	48990412	48990509	9524151	0	-	0.546392	(0.526,0.57]	chr19	940796	27	INTRON	INTRON	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8:ENST00000457974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	45	2	2.8391	3.4184400000000004	3.99778	4.09991e-6	1e-12	2.46356e-4	1.72912e-10
chr3	123862783	123862883	2414669	0	-	0.54	(0.526,0.57]	chr3	231502	265	INTRON	INTRON	MYLK	ENSG00000065534.20	ENST00000360304.8:ENST00000360772.7:ENST00000693689.1:ENST00000464489.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.57946	3.41838	4.2573	0.0110174	2.46218e-6	0.179063	1.55994e-4
chr15	20490887	20490987	8105440	0	-	0.33	(0.32,0.36]	chr15	749546	70	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000414804.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	20	41	2	3.32825	3.4174800000000003	3.50671	2.86701e-10	8.25852e-11	3.62647e-8	1.12407e-8
chr21	41180575	41180675	9816744	0	+	0.37	(0.36,0.392]	chr21	973271	116	INTRON	INTRON	BACE2	ENSG00000182240.16	ENST00000347667.5:ENST00000328735.10:ENST00000330333.11	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	3.20352	3.4170249999999998	3.63053	0.0019364	1.09566e-6	0.0476694	7.63801e-5
chr17	29079927	29080025	8901318	0	-	0.581633	(0.57,0.629]	chr17	852959	2	CDS	CDS:EXON_MRNA:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000636100.1:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	34	2	3.03121	3.4159	3.80059	7.39885e-6	1.12273e-8	4.2522e-4	1.13018e-6
chr1	229300767	229300866	451144	0	+	0.444444	(0.424,0.459]	chr1	48944	13	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	105	2	3.40563	3.415165	3.4247	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	59144971	59145069	6399575	0	+	0.612245	(0.57,0.629]	chr11	573886	16	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM111A	ENSG00000166801.17	ENST00000528737.5:ENST00000676459.1:ENST00000675163.1:ENST00000532790.5:ENST00000684135.1:ENST00000682018.1:ENST00000675806.2:ENST00000529985.3:ENST00000676340.1:ENST00000674617.1:ENST00000361723.7:ENST00000527629.6:ENST00000531408.6:ENST00000420244.6:ENST00000529358.1:ENST00000533703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	2.54498	3.4146	4.28422	0.00846131	0.00145677	0.140721	0.0382827
chr11	95826351	95826446	6472278	0	+	0.473684	(0.459,0.49]	chr11	584970	8	EXON_MRNA	EXON_MRNA:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000539855.5:ENST00000540830.5:ENST00000541150.5:ENST00000537093.5:ENST00000535224.1:ENST00000538158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	12	2	2.62233	3.414335	4.20634	0.00276656	0.0010962	0.0641652	0.030375
chr7	111217108	111217208	4815873	0	-	0.42	(0.392,0.424]	chr7	431926	2532	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	21	2	2.89309	3.4137750000000002	3.93446	0.00168714	6.33922e-9	0.0424371	6.67285e-7
chr8	144430470	144430537	5309131	0	-	0.552239	(0.526,0.57]	chr8	474990	2	CDS	CDS:EXON_MRNA	TONSL	ENSG00000160949.18	ENST00000409379.8:ENST00000497613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	36	2	3.39397	3.41317	3.43237	1.43292e-7	2.34953e-8	1.18998e-5	2.25889e-6
chr18	8620741	8620841	9053191	0	+	0.56	(0.526,0.57]	chr18	874937	104	INTRON	INTRON	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.44587	3.413005	4.38014	0.00220059	6.74826e-7	0.0550857	4.89646e-5
chr15	59225515	59225611	8194292	0	-	0.520833	(0.49,0.526]	chr15	759838	3	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559269.5:ENST00000558814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	36	2	2.87038	3.41275	3.95512	2.842e-7	4.14462e-8	2.21461e-5	3.74528e-6
chr15	57625892	57625992	7989380	0	+	0.45	(0.424,0.459]	chr15	738824	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYZAP	ENSG00000263155.6	ENST00000267853.10:ENST00000380565.8	protein_coding	protein_coding	protein_coding	protein_coding	43	113	2	3.21275	3.4125500000000004	3.61235	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	336334	336434	9690481	0	-	0.49	(0.459,0.49]	chr20	958281	112	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	20	66	2	3.28124	3.41	3.53876	1.94932e-11	1e-12	2.87925e-9	1.72912e-10
chr5	79303520	79303618	3228344	0	+	0.479592	(0.459,0.49]	chr5	298180	23	INTRON	INTRON	JMY	ENSG00000152409.9	ENST00000396137.5:ENST00000412001.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	3.21669	3.40991	3.60313	5.63284e-4	3.24494e-8	0.0178211	3.03829e-6
chr1	16595113	16595213	524931	0	-	0.48	(0.459,0.49]	chr1	56971	1	SS3_PROX	SS3_PROX:INTRON	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000392963.5:ENST00000420513.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.00155	3.409335	3.81712	0.0120499	0.00201907	0.184357	0.0510613
chr3	40465210	40465310	1844903	0	+	0.46	(0.459,0.49]	chr3	186728	31	UTR3	UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.00155	3.409335	3.81712	0.0120499	0.00201907	0.184357	0.0510613
chr11	247278	247363	6291747	0	+	0.4	(0.392,0.424]	chr11	563273	1	CDS	CDS:UTR3:EXON_MRNA	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	28	2	3.14992	3.40644	3.66296	1.8547e-6	2.12583e-8	1.21588e-4	2.06917e-6
chr17	42795146	42795237	8935583	0	-	0.604396	(0.57,0.629]	chr17	858573	1	UTR3	UTR3:EXON_MRNA	COA3	ENSG00000183978.8	ENST00000586680.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	14	2	2.95732	3.4054349999999998	3.85355	0.00848479	5.98045e-5	0.140721	0.00266913
chr12	131779125	131779224	7056070	0	+	0.606061	(0.57,0.629]	chr12	646906	4	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	57	2	3.36885	3.40419	3.43953	3.8051e-8	1e-12	3.51532e-6	1.72912e-10
chr19	1021087	1021179	9401147	0	-	0.76087	(0.629,1]	chr19	918513	2	UTR5	UTR5:EXON_MRNA	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000333175.9:ENST00000356663.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	57	2	2.98829	3.40389	3.81949	2.11181e-8	2.86182e-10	2.05739e-6	3.57987e-8
chr3	47136253	47136353	2261931	0	-	0.44	(0.424,0.459]	chr3	218501	92	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000409792.4:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.26116	3.40373	3.5463	0.00153741	8.43922e-4	0.0389999	0.0240064
chr10	14843108	14843189	5797689	0	+	0.45679	(0.424,0.459]	chr10	522047	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000284024:HSPA14	ENSG00000284024.4:ENSG00000187522.16	ENST00000645667.1:ENST00000378372.8:ENST00000640019.3:ENST00000441647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	11	2	3.0068	3.40347	3.80014	0.00341471	3.54639e-4	0.0729529	0.0120332
chr11	62609696	62609796	6616123	0	-	0.55	(0.526,0.57]	chr11	603754	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.83139	3.4031700000000003	3.97495	0.00350122	3.21576e-5	0.0746524	0.00156852
chr15	101222504	101222603	8291532	0	-	0.424242	(0.392,0.424]	chr15	769715	331	INTRON	INTRON	CHSY1	ENSG00000131873.7	ENST00000254190.4:ENST00000543813.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	3.39796	3.402955	3.40795	0.00439831	5.07532e-4	0.0875511	0.0162102
chr9	125946582	125946682	5489625	0	+	0.37	(0.36,0.392]	chr9	490753	106	INTRON	INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000447726.6:ENST00000673571.1:ENST00000538998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	9	2	2.97461	3.40287	3.83113	0.00698532	6.41601e-4	0.123839	0.0193935
chr16	30654229	30654284	8369876	0	+	0.6	(0.57,0.629]	chr16	781348	1	CDS	CDS:EXON_MRNA	PRR14	ENSG00000156858.12	ENST00000568754.5:ENST00000564946.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2:ENST00000567322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.6312	3.4028099999999997	4.17442	0.00652833	2.71799e-6	0.116779	1.71473e-4
chr22	38293419	38293513	10035129	0	-	0.617021	(0.57,0.629]	chr22	1000243	1	SS3_PROX	SS3_PROX:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000366216.6:ENST00000431632.5:ENST00000495232.5:ENST00000403904.5:ENST00000431611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.6312	3.4028099999999997	4.17442	0.00652833	2.71799e-6	0.116779	1.71473e-4
chr7	56063537	56063627	4393757	0	+	0.4	(0.392,0.424]	chr7	395872	6	UTR3	UTR3:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000466479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	10	2	2.84278	3.402495	3.96221	0.00949728	1.96069e-4	0.16275	0.00725539
chr15	45418982	45419082	7964822	0	+	0.41	(0.392,0.424]	chr15	737134	3	SS5_PROX	SS5_PROX:INTRON	SPATA5L1	ENSG00000171763.20	ENST00000305560.11:ENST00000531970.5:ENST00000531624.1:ENST00000533841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	10	2	2.76656	3.401795	4.03703	0.0113141	1.48653e-4	0.181488	0.00578975
chr10	89730828	89730927	5931436	0	+	0.383838	(0.36,0.392]	chr10	531858	12	INTRON	INTRON	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	9	2	3.20352	3.40172	3.59992	0.00266188	0.0019364	0.0631592	0.0476694
chr11	61411205	61411268	6612306	0	-	0.412698	(0.392,0.424]	chr11	603066	1	SS3_PROX	SS3_PROX:INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	10	2	3.3308	3.4013299999999997	3.47186	0.00366403	6.63878e-4	0.0766409	0.0199616
chr1	44766525	44766625	135868	0	+	0.51	(0.49,0.526]	chr1	16478	3	SS3_PROX	SS3_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000472235.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	11	2	2.41199	3.4008700000000003	4.38975	0.00770591	9.92102e-4	0.135524	0.0276375
chr14	69767087	69767185	7681509	0	+	0.571429	(0.57,0.629]	chr14	706155	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	3.19526	3.400645	3.60603	2.87788e-4	2.48707e-4	0.0101506	0.0089842
chr1	111681737	111681837	258491	0	+	0.43	(0.424,0.459]	chr1	26658	538	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	20	2	2.96654	3.399045	3.83155	3.06931e-5	1.07528e-5	0.00150487	5.78423e-4
chr13	48396239	48396339	7376259	0	+	0.36	(0.32,0.36]	chr13	681714	144	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	5	11	2	2.63272	3.398715	4.16471	0.00503554	9.22891e-5	0.0976839	0.00388567
chr14	103521529	103521625	7918030	0	-	0.791667	(0.629,1]	chr14	730144	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000553528.5:ENST00000553652.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1:ENST00000555659.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.88499	3.398635	3.91228	6.26713e-5	1.12818e-5	0.00277665	6.02727e-4
chr6	71359883	71359982	4100015	0	-	0.383838	(0.36,0.392]	chr6	373557	109	INTRON	INTRON	LINC00472	ENSG00000233237.8	ENST00000651778.1:ENST00000413945.6:ENST00000436803.6:ENST00000652655.1:ENST00000650942.1	lncRNA	lncRNA	lncRNA	lncRNA	21	46	2	2.64918	3.3985000000000003	4.14782	7.4768e-7	1e-12	5.39228e-5	1.72912e-10
chrX	73826695	73826794	10373474	0	-	0.535354	(0.526,0.57]	chrX	1029941	62	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2	lncRNA	lncRNA	lncRNA	lncRNA	25	91	2	3.38242	3.3984750000000004	3.41453	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	69767282	69767380	7681511	0	+	0.591837	(0.57,0.629]	chr14	706155	13	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	3.10805	3.39846	3.68887	3.71519e-4	1.98886e-4	0.0125602	0.00746609
chr6	100585137	100585237	4140373	0	-	0.45	(0.424,0.459]	chr6	377473	444	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	3.12644	3.39586	3.66528	2.23036e-4	4.70625e-5	0.00816414	0.00217308
chr13	20066577	20066668	7329328	0	+	0.494505	(0.49,0.526]	chr13	677662	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	2.88418	3.39574	3.9073	4.05006e-4	7.31994e-5	0.0135138	0.00316256
chr14	102703011	102703109	7760847	0	+	0.357143	(0.32,0.36]	chr14	712577	13	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	12	23	2	2.59058	3.395315	4.20005	1.18258e-4	1.33735e-8	0.00476512	1.33922e-6
chr16	1455191	1455250	8490290	0	-	0.440678	(0.424,0.459]	chr16	795024	2	CDS	CDS:EXON_MRNA	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	3.08786	3.3937999999999997	3.69974	9.50281e-7	1.02416e-7	6.73936e-5	8.70478e-6
chr3	152421477	152421576	2045030	0	+	0.424242	(0.392,0.424]	chr3	204369	60	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	38	2	2.94811	3.3912199999999997	3.83433	1.41315e-7	2.31922e-11	1.1711e-5	3.38703e-9
chr3	101737149	101737249	1942104	0	+	0.37	(0.36,0.392]	chr3	195832	41	INTRON	INTRON	CEP97	ENSG00000182504.11	ENST00000489172.5:ENST00000341893.8:ENST00000494050.5:ENST00000467655.1:ENST00000462076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	13	2	3.10651	3.3911100000000003	3.67571	8.23373e-4	9.00428e-5	0.0238997	0.00381913
chr1	36227658	36227758	108586	0	+	0.42	(0.392,0.424]	chr1	12451	18	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	16	38	2	3.16857	3.390895	3.61322	3.44162e-9	1.60535e-9	3.76949e-7	1.83357e-7
chr3	12840813	12840909	2176542	0	-	0.5625	(0.526,0.57]	chr3	212661	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	51	2	3.05422	3.3907249999999998	3.72723	6.22206e-10	5.64635e-11	7.56739e-8	7.86892e-9
chr8	94965547	94965647	5026543	0	+	0.47	(0.459,0.49]	chr8	451382	70	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	3.13407	3.38915	3.64423	7.72738e-4	6.20842e-4	0.0225969	0.0191195
chr5	295794	295894	3107206	0	+	0.47	(0.459,0.49]	chr5	287746	190	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	11	2	2.96081	3.388965	3.81712	0.0120499	4.52907e-4	0.184357	0.0150584
chr1	631073	631169	16	0	+	0.46875	(0.459,0.49]	chr1	3	1	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	14	45	2	2.8701	3.38883	3.90756	6.36768e-8	5.98188e-12	5.62819e-6	9.52923e-10
chr18	44952153	44952252	9111706	0	+	0.50505	(0.49,0.526]	chr18	879676	24	CDS	CDS:EXON_MRNA	SETBP1	ENSG00000152217.20	ENST00000677068.1:ENST00000649279.2:ENST00000677699.1:ENST00000678152.1:ENST00000677077.1:ENST00000677130.1	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	2.1842	3.387925	4.59165	0.00170135	8.79223e-8	0.0427802	7.5628e-6
chr5	108084368	108084468	3558914	0	-	0.4	(0.392,0.424]	chr5	324054	630	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	16	2	2.96229	3.38764	3.81299	2.64732e-4	2.36886e-5	0.00936619	0.00119556
chr13	48979512	48979611	7378349	0	+	0.444444	(0.424,0.459]	chr13	681783	22	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	56	2	3.34852	3.387125	3.42573	2.58171e-11	1e-12	3.76424e-9	1.73382e-10
chr9	106948206	106948306	5460334	0	+	0.43	(0.424,0.459]	chr9	487745	87	INTRON	INTRON	ZNF462	ENSG00000148143.13	ENST00000277225.10:ENST00000374686.6:ENST00000441147.6:ENST00000469433.5:ENST00000479166.1:ENST00000427098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	13	2	3.22652	3.3864099999999997	3.5463	0.00153741	1.43888e-4	0.0389999	0.00569484
chr10	119038371	119038439	6271771	0	-	0.529412	(0.526,0.57]	chr10	561018	3	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	193	665	2	3.28314	3.3859500000000002	3.48876	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	61586024	61586123	5179034	0	-	0.414141	(0.392,0.424]	chr8	464202	16	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000524173.5:ENST00000521499.5:ENST00000522349.5:ENST00000523897.5:ENST00000523927.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	12	2	3.29765	3.384755	3.47186	0.00366403	1.04913e-4	0.0766409	0.00432856
chr22	39319191	39319271	10039661	0	-	0.55	(0.526,0.57]	chr22	1001033	2	SS5_PROX	SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000465618.5:ENST00000402527.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5:ENST00000461967.1:ENST00000498462.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	2.38516	3.383785	4.38241	0.00834853	0.00101891	0.145988	0.0276375
chr5	71510059	71510158	3208055	0	+	0.464646	(0.459,0.49]	chr5	296025	7	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	109	2	2.36215	3.3837	4.40525	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	129008565	129008665	3012281	0	-	0.26	[0,0.32]	chr4	281997	43	INTRON	INTRON	SCLT1	ENSG00000151466.12	ENST00000651532.1:ENST00000281142.10:ENST00000503215.5:ENST00000439369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	13	2	2.85158	3.3833349999999998	3.91509	0.00137297	3.31414e-5	0.0360194	0.00159339
chr15	49006523	49006623	8156404	0	-	0.37	(0.36,0.392]	chr15	756319	47	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	13	27	2	3.17035	3.3826650000000003	3.59498	1.28326e-5	1.00061e-8	6.90028e-4	1.01215e-6
chr1	247138957	247139057	920477	0	-	0.46	(0.459,0.49]	chr1	101323	2	SS3_PROX	SS3_PROX:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000476312.1:ENST00000491356.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	30	2	2.82204	3.381785	3.94153	1.06091e-5	1.39656e-8	5.90817e-4	1.38361e-6
chr2	158658222	158658314	1188257	0	+	0.358696	(0.32,0.36]	chr2	125053	2	CDS	CDS:UTR3:EXON_MRNA	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000492496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	12	2	3.22173	3.38054	3.53935	5.53769e-4	3.19299e-4	0.0175806	0.010926
chr10	96937109	96937209	5950846	0	+	0.46	(0.459,0.49]	chr10	533684	290	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000493486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	19	2	3.0419	3.38001	3.71812	1.95784e-4	1.07121e-5	0.00725539	5.77005e-4
chr9	92271658	92271755	5661442	0	-	0.340206	(0.32,0.36]	chr9	506791	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	12	2	3.10453	3.379815	3.6551	8.28985e-4	2.11023e-4	0.024032	0.00785
chr21	43745392	43745485	9823581	0	+	0.494624	(0.49,0.526]	chr21	974210	9	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	3.12681	3.37964	3.63247	3.91053e-4	8.09548e-5	0.0131535	0.00346783
chr9	127468195	127468287	5497650	0	+	0.576087	(0.57,0.629]	chr9	491389	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LRSAM1	ENSG00000148356.15	ENST00000675224.1:ENST00000373324.8:ENST00000674771.1:ENST00000675641.1:ENST00000498513.6:ENST00000675572.1:ENST00000300417.11:ENST00000674784.1:ENST00000675789.1:ENST00000676349.1:ENST00000676336.1:ENST00000676170.1:ENST00000675448.1:ENST00000323301.8:ENST00000675141.1:ENST00000472068.2:ENST00000674516.1:ENST00000675883.1:ENST00000676014.1:ENST00000674970.1:ENST00000675253.1:ENST00000675657.1:ENST00000676318.1:ENST00000675945.1:ENST00000675213.1:ENST00000373322.1:ENST00000675445.1:ENST00000674621.1:ENST00000675198.1:ENST00000676399.1:ENST00000675662.1:ENST00000676137.1:ENST00000675012.1:ENST00000674511.1:ENST00000676409.1:ENST00000675521.1:ENST00000676106.1:ENST00000676035.1:ENST00000675364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	17	2	3.25564	3.379295	3.50295	6.5426e-4	1.26225e-4	0.0199608	0.00501499
chrX	73833324	73833411	10373544	0	-	0.45977	(0.459,0.49]	chrX	1029963	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000648991.1:ENST00000648927.2:ENST00000666309.1:ENST00000665247.1:ENST00000602495.1:ENST00000602863.2	lncRNA	lncRNA	lncRNA	lncRNA	12	36	2	2.81536	3.37892	3.94248	2.60399e-7	7.90681e-9	2.02399e-5	8.19016e-7
chr6	36087195	36087295	3766207	0	+	0.46	(0.459,0.49]	chr6	344238	102	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	17	2	2.788	3.37743	3.96686	3.42937e-4	5.54129e-5	0.0119676	0.00252909
chr5	177458047	177458141	3670957	0	-	0.670213	(0.629,1]	chr5	333985	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DBN1	ENSG00000113758.14	ENST00000309007.9:ENST00000393565.6:ENST00000292385.9:ENST00000472831.5:ENST00000512501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	57	2	2.70836	3.37735	4.04634	1.40501e-6	2.97196e-12	9.50224e-5	4.90203e-10
chr5	426428	426525	3108469	0	+	0.463918	(0.459,0.49]	chr5	287832	21	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000316418.10:ENST00000506456.1	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	3.23727	3.37707	3.51687	6.4056e-7	1.13902e-7	4.63619e-5	9.53605e-6
chr19	806154	806238	9258693	0	+	0.785714	(0.629,1]	chr19	891466	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5:ENST00000589883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	3.32274	3.3765400000000003	3.43034	7.60906e-4	9.0337e-6	0.0223166	5.04153e-4
chr7	110935538	110935638	4813054	0	-	0.44	(0.424,0.459]	chr7	431917	485	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	44	112	2	3.32986	3.3739600000000003	3.41806	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	19534274	19534369	9311844	0	+	0.484211	(0.459,0.49]	chr19	902472	12	UTR3	UTR3:EXON_MRNA:INTRON	YJEFN3	ENSG00000250067.12	ENST00000436027.9:ENST00000458210.7:ENST00000514277.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	70	2	3.04065	3.37232	3.70399	1.39969e-11	1e-12	2.13074e-9	1.72912e-10
chr17	60486867	60486967	8977556	0	-	0.41	(0.392,0.424]	chr17	864765	72	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000588668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	13	2	2.84278	3.37228	3.90178	0.00949728	7.45573e-6	0.16275	4.27499e-4
chr2	44468960	44469060	1008418	0	+	0.45	(0.424,0.459]	chr2	109402	118	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	20	2	2.72297	3.3713450000000003	4.01972	0.00293552	2.56149e-8	0.0672936	2.43432e-6
chr2	204807468	204807568	1277152	0	+	0.35	(0.32,0.36]	chr2	132846	1208	INTRON	INTRON	PARD3B	ENSG00000116117.19	ENST00000406610.7:ENST00000415947.1:ENST00000349953.7:ENST00000351153.5:ENST00000358768.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	3.3435	3.371205	3.39891	0.00108651	2.33974e-5	0.0301638	0.00116109
chr9	112441298	112441398	5463565	0	+	0.47	(0.459,0.49]	chr9	488083	2	SS3_PROX	SS3_PROX:INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000488101.5:ENST00000398805.8:ENST00000467434.5:ENST00000480881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	2.96081	3.370375	3.77994	4.52907e-4	2.14818e-4	0.0150584	0.00789628
chr10	110584253	110584324	5975682	0	+	0.323944	(0.32,0.36]	chr10	537030	2	CDS	CDS:EXON_MRNA	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000691297.1:ENST00000361804.5:ENST00000691527.1:ENST00000692792.1:ENST00000687823.1:ENST00000689932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	56	106	2	3.32249	3.369575	3.41666	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	28800360	28800424	10008760	0	-	0.765625	(0.629,1]	chr22	996723	2	CDS	CDS:EXON_MRNA	XBP1	ENSG00000100219.17	ENST00000216037.10:ENST00000403532.7:ENST00000344347.5:ENST00000482720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	25	2	1.71746	3.369405	5.02135	0.00475041	9.70346e-6	0.0909977	5.37523e-4
chr11	122372880	122372980	6765958	0	-	0.32	[0,0.32]	chr11	617631	50	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	17	33	2	2.78652	3.3691050000000002	3.95169	5.12915e-6	4.41691e-12	3.02233e-4	7.09592e-10
chr16	57174797	57174886	8563326	0	-	0.404494	(0.392,0.424]	chr16	806226	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566403.5:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000564424.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	3.18804	3.36763	3.54722	3.14916e-4	1.52245e-4	0.0110581	0.0058275
chr7	101946105	101946205	4494689	0	+	0.54	(0.526,0.57]	chr7	404888	131	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	23	2	2.52322	3.367185	4.21115	0.00370126	1.29171e-8	0.0806443	1.28568e-6
chrX	54550105	54550185	10132894	0	+	0.3875	(0.36,0.392]	chrX	1010794	2	SS3_PROX	SS3_PROX:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	17	2	2.90552	3.367115	3.82871	6.04072e-4	1.70072e-6	0.0189985	1.11415e-4
chr1	151165550	151165648	765131	0	-	0.55102	(0.526,0.57]	chr1	83264	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LYSMD1	ENSG00000163155.12	ENST00000368908.10:ENST00000440902.2	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.61109	3.367055	4.12302	7.5896e-4	8.93019e-6	0.0225125	4.98528e-4
chr2	29197599	29197698	973225	0	+	0.484848	(0.459,0.49]	chr2	106422	7	UTR3	UTR3:EXON_MRNA	CLIP4	ENSG00000115295.21	ENST00000689605.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.62233	3.36668	4.11103	0.0010962	8.64387e-8	0.030375	7.5e-6
chr3	40346175	40346275	2238251	0	-	0.49	(0.459,0.49]	chr3	216718	316	INTRON	INTRON	ENTPD3-AS1	ENSG00000223797.7	ENST00000439293.5	lncRNA	lncRNA	lncRNA	lncRNA	6	22	2	2.62233	3.36668	4.11103	0.0010962	8.64387e-8	0.030375	7.5e-6
chr9	123540978	123541078	5727521	0	-	0.33	(0.32,0.36]	chr9	513607	791	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	14	2	3.22173	3.366035	3.51034	5.53769e-4	3.99831e-5	0.0175806	0.00187621
chr10	12556855	12556955	5793568	0	+	0.44	(0.424,0.459]	chr10	521729	31	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	44	2	3.1122	3.3651	3.618	8.83055e-10	1.90434e-10	1.04662e-7	2.48103e-8
chr11	47326807	47326901	6394633	0	+	0.5	(0.49,0.526]	chr11	573150	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MADD	ENSG00000110514.19	ENST00000342922.8:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000395344.7:ENST00000395336.7:ENST00000402192.6:ENST00000634938.1:ENST00000460452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	32	2	2.54983	3.364695	4.17956	2.9786e-4	8.31535e-11	0.0104885	1.13093e-8
chr20	50894415	50894512	9765061	0	-	0.43299	(0.424,0.459]	chr20	967775	5	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	49	2	3.15825	3.36432	3.57039	9.9248e-8	1e-12	8.34671e-6	1.72912e-10
chr15	92800980	92801080	8276174	0	-	0.46	(0.459,0.49]	chr15	768887	125	INTRON	INTRON	FAM174B	ENSG00000185442.13	ENST00000557398.2:ENST00000555971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	3.32099	3.36243	3.40387	2.2051e-4	1.53229e-4	0.00809052	0.00595859
chr3	47886823	47886923	2266085	0	-	0.4	(0.392,0.424]	chr3	219073	89	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000497735.1:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	32	2	2.95256	3.3623700000000003	3.77218	4.41516e-6	1.79821e-10	2.61401e-4	2.33701e-8
chr7	35902975	35903075	4366164	0	+	0.32	[0,0.32]	chr7	393805	47	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000635175.1:ENST00000399035.7:ENST00000425198.1:ENST00000485569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	17	2	3.14971	3.3620799999999997	3.57445	2.32754e-4	3.24741e-6	0.00843063	2.02601e-4
chr11	12767833	12767933	6325836	0	+	0.41	(0.392,0.424]	chr11	567860	30	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	15	36	2	3.15611	3.361645	3.56718	1.02149e-7	3.13807e-10	8.68898e-6	3.91722e-8
chr10	100374272	100374367	5956846	0	+	0.526316	(0.526,0.57]	chr10	534483	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OLMALINC	ENSG00000235823.4	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000686136.1:ENST00000690014.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1:ENST00000454935.1:ENST00000654288.1:ENST00000669693.1:ENST00000664225.1:ENST00000664516.1	lncRNA	lncRNA	lncRNA	lncRNA	4	17	2	2.59957	3.361295	4.12302	0.00283719	8.93019e-6	0.0662445	4.98528e-4
chr10	7408801	7408901	6044861	0	-	0.71	(0.629,1]	chr10	542626	1	SS5_PROX	SS5_PROX:INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000682043.1:ENST00000682180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.84021	3.361005	3.8818	0.00897489	0.0064023	0.155806	0.114061
chr19	58305381	58305445	9397551	0	+	0.671875	(0.629,1]	chr19	917689	2	UTR5	UTR5:EXON_MRNA	ERVK3-1	ENSG00000142396.10	ENST00000413518.5:ENST00000427361.5:ENST00000610038.5:ENST00000609864.5:ENST00000608070.5:ENST00000434052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.84021	3.361005	3.8818	0.00897489	0.0064023	0.155806	0.114061
chr6	111873355	111873452	4170194	0	-	0.690722	(0.629,1]	chr6	379694	5	UTR5	UTR5:EXON_MRNA	FYN	ENSG00000010810.17	ENST00000354650.7:ENST00000368678.8:ENST00000523238.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.84021	3.361005	3.8818	0.00897489	0.0064023	0.155806	0.114061
chr18	48859855	48859954	9119204	0	+	0.646465	(0.629,1]	chr18	880045	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1:ENST00000592658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	3.32274	3.3606	3.39846	7.60906e-4	5.39652e-4	0.0223166	0.0171646
chr17	46151511	46151610	8948918	0	-	0.333333	(0.32,0.36]	chr17	860854	29	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	12	2	3.32165	3.36028	3.39891	0.00108651	1.85259e-4	0.0301638	0.00691112
chr5	59279716	59279816	3475041	0	-	0.35	(0.32,0.36]	chr5	319239	37	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	12	2	3.32165	3.36028	3.39891	0.00108651	1.85259e-4	0.0301638	0.00691112
chr16	4036855	4036955	8499881	0	-	0.55	(0.526,0.57]	chr16	796870	213	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000571889.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	3.32233	3.35999	3.39765	1.36681e-4	9.51513e-5	0.00539233	0.00399331
chr8	25354503	25354602	4951251	0	+	0.515152	(0.49,0.526]	chr8	443476	23	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000467709.6:ENST00000481728.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	33	2	3.11399	3.359715	3.60544	3.71754e-7	1.84284e-7	2.84996e-5	1.48809e-5
chr1	1871869	1871969	495599	0	-	0.48	(0.459,0.49]	chr1	53110	318	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	3.08436	3.359615	3.63487	0.00939464	1.69661e-5	0.161654	8.71289e-4
chr15	72541520	72541620	8035180	0	+	0.27	[0,0.32]	chr15	742156	230	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	8	2	3.27638	3.35874	3.4411	0.0118823	9.57415e-4	0.184357	0.0269423
chr8	127897271	127897370	5088981	0	+	0.50505	(0.49,0.526]	chr8	455278	47	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	12	40	2	2.93384	3.35853	3.78322	3.29587e-8	1.38009e-8	3.08405e-6	1.36941e-6
chr5	77380871	77380971	3225722	0	+	0.49	(0.459,0.49]	chr5	297957	271	INTRON	INTRON	PDE8B	ENSG00000113231.14	ENST00000264917.10:ENST00000340978.7:ENST00000346042.7:ENST00000342343.8:ENST00000333194.8	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	2.43515	3.357945	4.28074	0.00338763	3.57604e-6	0.0728314	2.18487e-4
chr17	61111583	61111683	8764367	0	+	0.44	(0.424,0.459]	chr17	834177	242	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	11	2	3.23804	3.357685	3.47733	0.00649971	2.01844e-4	0.114061	0.00755335
chr9	130805453	130805553	5515983	0	+	0.29	[0,0.32]	chr9	495051	906	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	8	2	3.35176	3.357095	3.36243	0.0102933	0.00121149	0.170122	0.0321344
chr1	35192494	35192585	568171	0	-	0.78022	(0.629,1]	chr1	63821	4	CDS	CDS:EXON_MRNA	SFPQ	ENSG00000116560.12	ENST00000696553.1:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.91389	3.3569199999999997	3.79995	5.22361e-4	2.99254e-5	0.0167376	0.00144698
chr5	59501177	59501277	3477259	0	-	0.32	[0,0.32]	chr5	319250	707	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	19	2	2.79853	3.3569199999999997	3.91531	6.68468e-4	7.60334e-8	0.0200896	6.5948e-6
chr16	30380004	30380103	8368777	0	+	0.474747	(0.459,0.49]	chr16	781098	12	INTRON	INTRON	ZNF48	ENSG00000180035.13	ENST00000495929.3:ENST00000528032.5:ENST00000622647.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.66682	3.3566900000000004	4.04656	0.00873764	3.80472e-5	0.144342	0.00181622
chr11	12711027	12711127	6325266	0	+	0.45	(0.424,0.459]	chr11	567852	351	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.3314	3.355235	3.37907	0.00517898	2.98646e-4	0.0992178	0.0104901
chr7	111439073	111439173	4818097	0	-	0.44	(0.424,0.459]	chr7	431941	463	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	3.3314	3.355235	3.37907	0.00517898	2.98646e-4	0.0992178	0.0104901
chr5	154941210	154941265	3366261	0	+	0.581818	(0.57,0.629]	chr5	309557	1	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	3.20738	3.355165	3.50295	0.00279229	6.5426e-4	0.064521	0.0199608
chr11	62642665	62642765	6616455	0	-	0.51	(0.49,0.526]	chr11	603909	22	INTRON	INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	2.76614	3.35472	3.9433	0.00430264	5.12922e-7	0.0867442	3.78931e-5
chr19	2128689	2128789	9405664	0	-	0.82	(0.629,1]	chr19	919651	2	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.9665	3.354095	4.74169	0.00835666	7.88558e-5	0.14021	0.00339056
chr10	35331247	35331347	6114488	0	-	0.42	(0.392,0.424]	chr10	547698	104	INTRON	INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	5	14	2	2.89309	3.35304	3.81299	0.00168714	2.36886e-5	0.0424371	0.00119556
chr1	161854919	161855019	318712	0	+	0.51	(0.49,0.526]	chr1	36110	12	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1:ENST00000476437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	3.07223	3.35235	3.63247	9.76018e-4	3.91053e-4	0.0274227	0.0131535
chr8	86471493	86471593	5018961	0	+	0.33	(0.32,0.36]	chr8	450286	31	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000520798.5	protein_coding	protein_coding	protein_coding	protein_coding	5	11	2	3.10641	3.35222	3.59803	0.00267453	2.76345e-4	0.0637459	0.00984115
chr1	16565632	16565718	524598	0	-	0.476744	(0.459,0.49]	chr1	56830	1	CDS	CDS:UTR3:EXON_MRNA	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000392963.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	10	2	3.31269	3.35199	3.39129	0.00308309	0.00244536	0.0699986	0.0587626
chr9	98110434	98110534	5677660	0	-	0.48	(0.459,0.49]	chr9	508519	2	SS3_PROX	SS3_PROX:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000341469.7:ENST00000342043.3:ENST00000475147.1:ENST00000478401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	10	2	3.31269	3.35199	3.39129	0.00308309	0.00244536	0.0699986	0.0587626
chr3	4753073	4753173	1753769	0	+	0.53	(0.526,0.57]	chr3	179682	149	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13:ENST00000648038.1:ENST00000647717.1:ENST00000648431.1:ENST00000648212.1:ENST00000648016.1:ENST00000648390.1:ENST00000649144.1:ENST00000649694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	3.15803	3.3519550000000002	3.54588	0.00482649	2.75366e-5	0.0920354	0.00135076
chr6	31749317	31749416	3755310	0	+	0.474747	(0.459,0.49]	chr6	341672	15	INTRON	INTRON	MSH5	ENSG00000204410.16	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	3.13407	3.3518	3.56953	7.72738e-4	4.08493e-5	0.0225969	0.00193677
chr9	37974765	37974837	5617014	0	-	0.472222	(0.459,0.49]	chr9	503732	3	CDS	CDS:EXON_MRNA	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	3.13407	3.3518	3.56953	7.72738e-4	4.08493e-5	0.0225969	0.00193677
chr5	146488923	146489023	3350319	0	+	0.32	[0,0.32]	chr5	307657	49	INTRON	INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	14	2	3.12911	3.3517799999999998	3.57445	0.00484145	3.24741e-6	0.0964485	2.02601e-4
chr10	63438721	63438821	6148650	0	-	0.48	(0.459,0.49]	chr10	550098	579	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	3.21669	3.3515699999999997	3.48645	5.63284e-4	6.16705e-5	0.0178211	0.00276144
chr12	132656735	132656835	7324804	0	-	0.35	(0.32,0.36]	chr12	676870	2	SS5_PROX	SS5_PROX:INTRON	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5:ENST00000536445.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	20	2	2.71717	3.351495	3.98582	9.10347e-4	1.98562e-8	0.0260463	1.9421e-6
chr9	132318042	132318141	5754482	0	-	0.40404	(0.392,0.424]	chr9	516416	58	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	21	51	2	3.00646	3.35145	3.69644	1.28233e-7	1e-12	1.06819e-5	1.72912e-10
chr18	9559511	9559604	9179141	0	-	0.44086	(0.424,0.459]	chr18	884484	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000584754.1:ENST00000577667.1:ENST00000583438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	16	2	3.26116	3.35127	3.44138	8.43922e-4	1.51347e-5	0.0240064	8.01855e-4
chr12	9293744	9293827	6819710	0	+	0.53012	(0.526,0.57]	chr12	623527	2	EXON_PSEUDO	EXON_PSEUDO	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	14	2	2.2577	3.349695	4.44169	0.00230987	8.21639e-4	0.0562688	0.0238903
chr17	586269	586364	8830204	0	-	0.431579	(0.424,0.459]	chr17	842622	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681897.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	35	2	3.3432	3.349665	3.35613	3.56799e-8	1.04265e-8	3.30959e-6	1.05111e-6
chr6	2075105	2075205	3989322	0	-	0.33	(0.32,0.36]	chr6	361429	318	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	5	11	2	2.98798	3.348745	3.70951	0.00201951	4.39493e-4	0.0510613	0.0145031
chrX	132449102	132449202	10434757	0	-	0.39	(0.36,0.392]	chrX	1034956	84	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	54	106	2	3.15722	3.3476350000000004	3.53805	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	122980703	122980795	7040570	0	+	0.793478	(0.629,1]	chr12	645727	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARL6IP4	ENSG00000182196.14	ENST00000543566.6:ENST00000539770.6:ENST00000453766.7:ENST00000392435.7:ENST00000542099.5:ENST00000413381.6:ENST00000426960.6:ENST00000454885.6:ENST00000315580.10:ENST00000539576.5:ENST00000442210.2:ENST00000412505.6:ENST00000540708.5:ENST00000536502.5:ENST00000540382.5:ENST00000439686.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.781	3.34664	3.91228	0.00122107	1.12818e-5	0.0323167	6.02727e-4
chr9	134809182	134809236	5525439	0	+	0.703704	(0.629,1]	chr9	496695	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4:ENST00000463925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.781	3.34664	3.91228	0.00122107	1.12818e-5	0.0323167	6.02727e-4
chr12	62654617	62654717	7184469	0	-	0.5	(0.49,0.526]	chr12	663709	56	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551214.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	2.60562	3.345275	4.08493	0.0102832	0.00395081	0.170122	0.0816719
chr20	58891641	58891726	9683490	0	+	0.941176	(0.629,1]	chr20	956570	5	UTR5	UTR5:EXON_MRNA:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	46	2	3.3135	3.34441	3.37532	4.14498e-7	2.07951e-8	3.10839e-5	1.99532e-6
chr2	36403482	36403582	989839	0	+	0.47	(0.459,0.49]	chr2	107814	63	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	3.12648	3.343915	3.56135	1.31261e-4	1.37546e-6	0.00527452	9.34366e-5
chr5	94041339	94041439	3543338	0	-	0.53	(0.526,0.57]	chr5	322930	765	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000506398.6:ENST00000504768.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	2.38516	3.34386	4.30256	0.00834853	1.99821e-9	0.145988	2.2589e-7
chr2	37213863	37213961	1417276	0	-	0.336735	(0.32,0.36]	chr2	147429	1	CDS	CDS:EXON_MRNA	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	36	67	2	3.28754	3.34306	3.39858	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	50739805	50739905	8741861	0	+	0.34	(0.32,0.36]	chr17	832125	1	SS3_PROX	SS3_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000513025.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	19	2	3.07269	3.3424	3.61211	5.62304e-5	2.61769e-6	0.00256405	1.63848e-4
chr18	21573789	21573885	9188164	0	-	0.34375	(0.32,0.36]	chr18	885523	6	CDS	CDS:EXON_MRNA	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	41	72	2	2.87352	3.34158	3.80964	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	99950167	99950170	2966352	0	-	0.333333	(0.32,0.36]	chr4	278549	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	17	2	3.08717	3.34137	3.59557	0.00535148	1.48732e-7	0.100211	1.23002e-5
chr11	9968745	9968845	6559156	0	-	0.36	(0.32,0.36]	chr11	596437	2	SS3_PROX	SS3_PROX:INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000688344.1:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000689597.1:ENST00000530741.2:ENST00000689674.1:ENST00000690003.1:ENST00000693181.1:ENST00000533770.6:ENST00000420722.3:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000690234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	3.28365	3.3412800000000002	3.39891	0.00153031	0.00108651	0.0389999	0.0301638
chr17	31339804	31339904	8697056	0	+	0.36	(0.32,0.36]	chr17	823545	11	EXON_MRNA	EXON_MRNA:INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000687863.1:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1:ENST00000684998.1:ENST00000584328.1:ENST00000471572.6:ENST00000581790.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	3.28365	3.3412800000000002	3.39891	0.00153031	0.00108651	0.0389999	0.0301638
chrX	73820846	73820945	10373415	0	-	0.323232	(0.32,0.36]	chrX	1029941	3	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000416330.2:ENST00000429829.6:ENST00000648829.1:ENST00000666954.1:ENST00000417942.5:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1	lncRNA	lncRNA	lncRNA	lncRNA	4	10	2	3.28365	3.3412800000000002	3.39891	0.00153031	0.00108651	0.0389999	0.0301638
chr12	20447708	20447808	6842841	0	+	0.32	[0,0.32]	chr12	625044	771	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	9	2	3.00824	3.34122	3.6742	0.00225126	0.00220802	0.0552099	0.053911
chr2	168617091	168617191	1198414	0	+	0.31	[0,0.32]	chr2	125662	554	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	4	9	2	3.00824	3.34122	3.6742	0.00225126	0.00220802	0.0552099	0.053911
chr18	21569084	21569182	9188116	0	-	0.336735	(0.32,0.36]	chr18	885520	6	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	8	2	2.97267	3.34109	3.70951	0.00701727	0.00201951	0.122029	0.0510613
chr6	32976169	32976249	3757907	0	+	0.375	(0.36,0.392]	chr6	342715	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	10	2	2.85081	3.34097	3.83113	0.00352888	6.41601e-4	0.0751127	0.0193935
chr3	37040294	37040394	1827965	0	+	0.5	(0.49,0.526]	chr3	184991	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	71	2	3.02555	3.340385	3.65522	1.79216e-10	1e-12	2.3359e-8	1.72912e-10
chr10	101695005	101695105	6238004	0	-	0.79	(0.629,1]	chr10	558197	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	FBXW4	ENSG00000107829.15	ENST00000331272.9:ENST00000664783.1:ENST00000457105.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.55191	3.3401699999999996	4.12843	0.004809	0.00233396	0.0964485	0.0563219
chr17	82588364	82588463	8824055	0	+	0.686869	(0.629,1]	chr17	841885	7	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.55191	3.3401699999999996	4.12843	0.004809	0.00233396	0.0964485	0.0563219
chr7	139359845	139359928	4567656	0	+	0.746988	(0.629,1]	chr7	410435	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.55191	3.3401699999999996	4.12843	0.004809	0.00233396	0.0964485	0.0563219
chr14	103520215	103520310	7918009	0	-	0.536842	(0.526,0.57]	chr14	730129	2	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5:ENST00000555039.1:ENST00000555366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	3.32233	3.33967	3.35701	1.36681e-4	8.61246e-6	0.00539233	4.81312e-4
chr9	132317543	132317643	5754477	0	-	0.3	[0,0.32]	chr9	516416	53	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	4	9	2	2.92861	3.3395	3.75039	0.00282946	0.00182075	0.0650221	0.0469284
chr1	632423	632519	30	0	+	0.322917	(0.32,0.36]	chr1	3	15	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	19	36	2	2.9641	3.3385100000000003	3.71292	6.23159e-8	1.33333e-10	5.42989e-6	1.78706e-8
chr21	14042984	14043084	9781469	0	+	0.25	[0,0.32]	chr21	970280	150	INTRON	INTRON	ENSG00000224905	ENSG00000224905.8	ENST00000690295.1:ENST00000448463.3:ENST00000653756.2:ENST00000428809.5:ENST00000432621.5	lncRNA	lncRNA	lncRNA	lncRNA	8	15	2	2.65227	3.338495	4.02472	9.28687e-4	8.66912e-6	0.0261843	4.85864e-4
chr3	133624113	133624175	2438923	0	-	0.419355	(0.392,0.424]	chr3	234151	2	CDS	CDS:EXON_MRNA	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1:ENST00000513818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	38	2	2.82789	3.338165	3.84844	1.65943e-6	1.22091e-12	1.11432e-4	2.08866e-10
chr10	5699517	5699587	5778577	0	+	0.285714	[0,0.32]	chr10	520598	2	UTR5	UTR5:EXON_MRNA:INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	75	132	2	3.25511	3.3377100000000004	3.42031	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	114509950	114510050	731364	0	-	0.47	(0.459,0.49]	chr1	78340	452	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6	protein_coding	protein_coding	protein_coding	protein_coding	13	43	2	2.54665	3.3373749999999998	4.1281	1.89556e-5	1e-12	9.62356e-4	1.72912e-10
chr22	50798654	50798752	9979065	0	+	0.520408	(0.49,0.526]	chr22	993141	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL23AP82	ENSG00000184319.17	ENST00000467796.5:ENST00000462238.6:ENST00000651346.2:ENST00000687913.1:ENST00000480246.2:ENST00000690684.1:ENST00000687360.1:ENST00000427528.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	14	2	2.76614	3.33672	3.9073	0.00430264	7.31994e-5	0.0867442	0.00316256
chr2	36539033	36539132	991211	0	+	0.515152	(0.49,0.526]	chr2	107892	11	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.16684	3.33645	3.50606	0.00470616	0.0010102	0.0901733	0.0282228
chrX	53272063	53272163	10344713	0	-	0.52	(0.49,0.526]	chrX	1027311	46	INTRON	INTRON	IQSEC2	ENSG00000124313.18	ENST00000640694.1:ENST00000675719.1:ENST00000642864.1:ENST00000674510.1:ENST00000375365.2:ENST00000638630.1:ENST00000498281.2:ENST00000639161.2:ENST00000462054.6:ENST00000485377.5:ENST00000675731.1:ENST00000638583.1:ENST00000639485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.25397	3.336165	3.41836	0.00365962	0.00136895	0.0766409	0.0359623
chr20	63823812	63823911	9780545	0	-	0.494949	(0.49,0.526]	chr20	970001	327	INTRON	INTRON	ZBTB46	ENSG00000130584.12	ENST00000245663.9:ENST00000302995.2:ENST00000650966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	9	2	2.51463	3.335885	4.15714	0.0130492	0.00319561	0.198111	0.0699484
chr7	6397692	6397786	4301467	0	+	0.521277	(0.49,0.526]	chr7	389832	8	INTRON	INTRON	RAC1	ENSG00000136238.19	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	2.51463	3.335885	4.15714	0.0130492	0.00319561	0.198111	0.0699484
chr7	26198904	26198999	4661353	0	-	0.263158	[0,0.32]	chr7	418809	12	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	13	2	3.18466	3.333445	3.48223	6.2959e-4	9.66779e-5	0.0193151	0.00402002
chr7	110931543	110931642	4813014	0	-	0.474747	(0.459,0.49]	chr7	431917	445	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	23	2	2.94746	3.33279	3.71812	1.30182e-5	1.07121e-5	0.00069975600000000005	5.77005e-4
chr13	60505948	60506048	7391014	0	+	0.41	(0.392,0.424]	chr13	682875	110	INTRON	INTRON	TDRD3	ENSG00000083544.16	ENST00000196169.7:ENST00000484389.6:ENST00000377894.6:ENST00000377881.8:ENST00000648252.1:ENST00000621840.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	17	2	1.98288	3.33263	4.68238	0.00758873	3.20208e-7	0.133909	2.47387e-5
chr6	170353669	170353768	3981908	0	+	0.343434	(0.32,0.36]	chr6	361102	50	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	10	21	2	2.67794	3.33188	3.98582	4.63564e-4	1.98562e-8	0.0152502	1.9421e-6
chr9	28640302	28640402	5601590	0	-	0.42	(0.392,0.424]	chr9	501393	1639	INTRON	INTRON	LINGO2	ENSG00000174482.10	ENST00000379992.6:ENST00000613945.3:ENST00000308675.5	protein_coding	protein_coding	protein_coding	protein_coding	8	19	2	2.35343	3.3316049999999997	4.30978	0.00278175	7.17587e-8	0.0657948	6.27925e-6
chr13	110543570	110543670	7565576	0	-	0.36	(0.32,0.36]	chr13	695961	190	INTRON	INTRON	RAB20	ENSG00000139832.5	ENST00000267328.5	protein_coding	protein_coding	protein_coding	protein_coding	8	17	2	2.83616	3.33143	3.8267	5.78657e-4	1.7206e-6	0.0182895	1.14305e-4
chr17	61069928	61070028	8763947	0	+	0.54	(0.526,0.57]	chr17	834155	287	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000592827.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	104	2	3.02843	3.33102	3.63361	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	1739701	1739778	2544361	0	+	0.61039	(0.57,0.629]	chr4	244438	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000651817.1:ENST00000470808.1:ENST00000404054.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	287	1107	2	3.25476	3.3303700000000003	3.40598	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	145003496	145003594	5103983	0	+	0.581633	(0.57,0.629]	chr8	457692	8	EXON_LNCRNA	EXON_LNCRNA	ZNF252P-AS1	ENSG00000255559.1	ENST00000527067.1	lncRNA	lncRNA	lncRNA	lncRNA	3	13	2	2.74492	3.330225	3.91553	0.00651627	7.5309e-4	0.114061	0.0225125
chr5	81250202	81250302	3523711	0	-	0.33	(0.32,0.36]	chr5	322026	1	SS5_PROX	SS5_PROX:INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	12	25	2	2.76816	3.33003	3.8919	1.33623e-4	1.41333e-9	0.00536744	1.63618e-7
chr1	150304447	150304547	293430	0	+	0.53	(0.526,0.57]	chr1	30971	96	INTRON	INTRON	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.52322	3.32974	4.13626	0.00370126	0.00339748	0.0806443	0.0728314
chr8	79767574	79767663	5199100	0	-	0.606742	(0.57,0.629]	chr8	465740	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HEY1	ENSG00000164683.18	ENST00000674177.1:ENST00000354724.8:ENST00000337919.9:ENST00000521111.2:ENST00000523531.2:ENST00000674160.1:ENST00000674439.1:ENST00000674358.1:ENST00000519075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	41	2	3.03121	3.3297100000000004	3.62821	7.39885e-6	7.62589e-11	4.2522e-4	1.04245e-8
chr6	36525590	36525642	4049043	0	-	0.384615	(0.36,0.392]	chr6	369104	1	CDS	CDS:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	64	126	2	3.28469	3.32863	3.37257	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	1853077	1853177	495411	0	-	0.57	(0.526,0.57]	chr1	53110	130	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	2.57946	3.328565	4.07767	0.0110174	0.00403601	0.179063	0.0817225
chr6	52284674	52284709	4083215	0	-	0.6	(0.57,0.629]	chr6	372024	1	CDS	CDS:UTR5:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.6558	3.328565	4.00133	0.0011074	1.78261e-5	0.0296131	9.13271e-4
chr17	30835857	30835952	8692182	0	+	0.357895	(0.32,0.36]	chr17	822951	19	CDS	CDS:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	67	123	2	3.15581	3.328445	3.50108	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	71509960	71510059	3208054	0	+	0.434343	(0.424,0.459]	chr5	296025	6	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	111	2	3.23145	3.328075	3.4247	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	694077	694147	9165446	0	-	0.414286	(0.392,0.424]	chr18	883153	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	20	2	2.34464	3.32721	4.30978	0.00149241	7.17587e-8	0.0391745	6.27925e-6
chr19	663177	663233	9400553	0	-	0.767857	(0.629,1]	chr19	918328	2	UTR5	UTR5:EXON_MRNA	RNF126	ENSG00000070423.18	ENST00000292363.10:ENST00000605891.5:ENST00000589762.5:ENST00000591394.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.9761	3.327115	3.67813	0.00463564	7.89766e-5	0.089408	0.00339213
chr10	101818376	101818465	6238402	0	-	0.651685	(0.629,1]	chr10	558318	5	UTR5	UTR5:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding	89	500	2	3.27141	3.3269450000000003	3.38248	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	20402625	20402725	3724857	0	+	0.78	(0.629,1]	chr6	338526	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.05121	3.3266150000000003	3.60202	0.00356029	1.20607e-4	0.0753972	0.00489816
chr12	39342033	39342124	7141573	0	-	0.384615	(0.36,0.392]	chr12	655885	1	CDS	CDS:EXON_MRNA	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	40	80	2	3.24391	3.32647	3.40903	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	7060	7156	10480448	0	+	0.416667	(0.392,0.424]	chrM	1038991	12	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	38	83	2	2.76227	3.3254799999999998	3.88869	1.26987e-12	1e-12	2.17019e-10	1.72912e-10
chr3	195948645	195948741	2528417	0	-	0.489583	(0.459,0.49]	chr3	242239	8	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	10	2	3.00648	3.325355	3.64423	0.0112903	6.20842e-4	0.181488	0.0191195
chr12	11000780	11000880	7086336	0	-	0.28	[0,0.32]	chr12	651836	26	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	46	2	2.98705	3.3252800000000002	3.66351	6.19841e-10	1e-12	7.52104e-8	1.73382e-10
chr9	137040898	137040984	5769179	0	-	0.755814	(0.629,1]	chr9	519110	2	CDS	CDS:EXON_MRNA	NPDC1	ENSG00000107281.10	ENST00000371601.5:ENST00000371600.7:ENST00000488145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	3.25188	3.32517	3.39846	5.39652e-4	3.84594e-5	0.0171646	0.0018139
chr1	246153271	246153371	914987	0	-	0.46	(0.459,0.49]	chr1	100951	570	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	3.08436	3.324755	3.56515	0.00939464	8.21277e-4	0.161654	0.0238805
chr7	151640670	151640770	4889373	0	-	0.46	(0.459,0.49]	chr7	437927	76	INTRON	INTRON	PRKAG2	ENSG00000106617.15	ENST00000287878.9:ENST00000492843.6:ENST00000651303.1:ENST00000652159.1:ENST00000650948.1:ENST00000652136.1:ENST00000651764.1:ENST00000651836.1:ENST00000651378.1:ENST00000650858.1:ENST00000651188.1:ENST00000392801.6:ENST00000652047.1:ENST00000488258.5:ENST00000652707.1:ENST00000652321.1:ENST00000487375.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	10	2	3.08436	3.324755	3.56515	0.00939464	8.21277e-4	0.161654	0.0238805
chr6	41894823	41894923	4060601	0	-	0.54	(0.526,0.57]	chr6	370128	1	SS5_PROX	SS5_PROX:INTRON	USP49	ENSG00000164663.15	ENST00000682992.1:ENST00000373006.5	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	3.14943	3.323695	3.49796	1.32043e-6	7.88666e-7	8.99853e-5	5.58258e-5
chr9	17311650	17311749	5343151	0	+	0.575758	(0.57,0.629]	chr9	477736	20	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.95732	3.3230950000000004	3.68887	0.00848479	1.98886e-4	0.140721	0.00746609
chr20	46376603	46376703	9751327	0	-	0.49	(0.459,0.49]	chr20	966400	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ELMO2	ENSG00000062598.18	ENST00000290246.11:ENST00000372176.5:ENST00000396391.5:ENST00000352077.6:ENST00000425546.5:ENST00000462491.5:ENST00000481852.5:ENST00000488853.5:ENST00000450812.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	25	2	3.0419	3.322475	3.60305	1.95784e-4	5.53598e-8	0.00725539	4.89622e-6
chr17	82891343	82891435	8826372	0	+	0.619565	(0.57,0.629]	chr17	842166	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	28	2	3.27739	3.32231	3.36723	6.22568e-6	3.34118e-6	3.59946e-4	2.05457e-4
chr13	40942951	40943047	7499637	0	-	0.416667	(0.392,0.424]	chr13	690260	1	CDS	CDS:UTR3:EXON_MRNA	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000498824.4:ENST00000625359.1:ENST00000635415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	24	2	2.91247	3.321485	3.7305	2.63771e-5	1.31505e-7	0.00130428	1.09942e-5
chr13	114291488	114291544	7456649	0	+	0.285714	[0,0.32]	chr13	686982	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5:ENST00000481131.5:ENST00000479712.1:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	54	2	3.29401	3.3213150000000002	3.34862	7.51577e-12	1e-12	1.17402e-9	1.73382e-10
chr9	35553079	35553178	5374775	0	+	0.565657	(0.526,0.57]	chr9	479964	42	INTRON	INTRON	RUSC2	ENSG00000198853.12	ENST00000361226.8:ENST00000455600.1	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	3.23242	3.3209549999999997	3.40949	0.00141136	3.23436e-4	0.0368074	0.0113067
chr4	87045065	87045165	2681644	0	+	0.54	(0.526,0.57]	chr4	255323	373	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.83139	3.320655	3.80992	0.00350122	1.14789e-4	0.0746524	0.00467969
chr11	66655667	66655767	6421792	0	+	0.49	(0.459,0.49]	chr11	578758	34	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.7486	3.320555	3.89251	0.00700666	1.23517e-6	0.12393	8.43676e-5
chr17	514346	514445	8829456	0	-	0.464646	(0.459,0.49]	chr17	842532	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS53	ENSG00000141252.21	ENST00000681866.1:ENST00000437048.7:ENST00000681160.1:ENST00000679447.1:ENST00000680465.1:ENST00000681217.1:ENST00000681570.1:ENST00000681578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	47	2	2.88059	3.320135	3.75968	5.04701e-9	6.35646e-11	5.38128e-7	8.81514e-9
chr17	40087089	40087177	8713386	0	+	0.443182	(0.424,0.459]	chr17	826272	2	SS5_PROX	SS5_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	3.26116	3.320115	3.37907	8.43922e-4	2.98646e-4	0.0240064	0.0104901
chr14	102019892	102019974	7756736	0	+	0.463415	(0.459,0.49]	chr14	712142	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	28	2	2.63427	3.3200849999999997	4.0059	1.01659e-5	3.28131e-7	5.53516e-4	2.53115e-5
chr11	95808132	95808231	6472085	0	+	0.40404	(0.392,0.424]	chr11	584934	84	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	36	2	2.94811	3.3196649999999996	3.69122	1.41315e-7	4.16937e-10	1.1711e-5	5.1571e-8
chr10	125066918	125067017	6284615	0	-	0.565657	(0.526,0.57]	chr10	562374	274	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.15803	3.31943	3.48083	0.00482649	0.00110295	0.0920354	0.0304129
chr19	13772662	13772757	9294643	0	+	0.536842	(0.526,0.57]	chr19	898809	5	UTR3	UTR3:EXON_MRNA	MRI1	ENSG00000037757.14	ENST00000040663.8:ENST00000319545.12	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.15803	3.31943	3.48083	0.00482649	0.00110295	0.0920354	0.0304129
chr19	49601090	49601190	9375534	0	+	0.55	(0.526,0.57]	chr19	913433	2	SS3_PROX	SS3_PROX:INTRON	PRR12	ENSG00000126464.15	ENST00000418929.7	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.15803	3.31943	3.48083	0.00482649	0.00110295	0.0920354	0.0304129
chr17	1669998	1670098	8839244	0	-	0.37	(0.36,0.392]	chr17	843828	75	INTRON	INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	13	28	2	2.97277	3.3194	3.66603	6.90961e-6	4.32563e-9	3.9887e-4	4.65065e-7
chr5	61344542	61344642	3181512	0	+	0.42	(0.392,0.424]	chr5	293789	112	INTRON	INTRON	ZSWIM6	ENSG00000130449.6	ENST00000252744.6	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.85679	3.3193650000000003	3.78194	7.47402e-4	1.60143e-4	0.0225125	0.0061196
chr7	111216108	111216208	4815863	0	-	0.42	(0.392,0.424]	chr7	431926	2522	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	37	2	2.98793	3.3192399999999997	3.65055	2.34553e-7	3.58994e-10	1.88437e-5	4.49495e-8
chr1	21858180	21858278	540669	0	-	0.530612	(0.526,0.57]	chr1	59659	4	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.22891	3.3192	3.40949	0.00393565	0.00141136	0.0798064	0.0368074
chr14	104780151	104780216	7919850	0	-	0.553846	(0.526,0.57]	chr14	730444	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	11	2	3.22891	3.3192	3.40949	0.00393565	0.00141136	0.0798064	0.0368074
chr19	2786078	2786178	9264434	0	+	0.55	(0.526,0.57]	chr19	893124	4	SS5_PROX	SS5_PROX:INTRON	THOP1	ENSG00000172009.15	ENST00000307741.11:ENST00000585673.5:ENST00000585338.1:ENST00000586780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	3.22891	3.3192	3.40949	0.00393565	0.00141136	0.0798064	0.0368074
chr3	48436695	48436792	2268631	0	-	0.536082	(0.526,0.57]	chr3	219376	12	INTRON	INTRON	CCDC51	ENSG00000164051.14	ENST00000447018.5:ENST00000412398.6:ENST00000395694.7:ENST00000442740.1:ENST00000446140.1:ENST00000438370.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	3.22891	3.3192	3.40949	0.00393565	0.00141136	0.0798064	0.0368074
chr16	1752983	1753082	8300536	0	+	0.555556	(0.526,0.57]	chr16	771930	1	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000567849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	3.1573	3.319065	3.48083	0.00110295	4.45312e-4	0.0304129	0.0146627
chr5	150393371	150393461	3357107	0	+	0.555556	(0.526,0.57]	chr5	308639	1	CDS	CDS:EXON_MRNA:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000674413.1:ENST00000514442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	3.1573	3.319065	3.48083	0.00110295	4.45312e-4	0.0304129	0.0146627
chr1	155008967	155009066	305549	0	+	0.636364	(0.629,1]	chr1	33125	57	INTRON	INTRON	ZBTB7B	ENSG00000160685.14	ENST00000417934.6:ENST00000368426.3:ENST00000535420.6:ENST00000483226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.95334	3.3180699999999996	3.6828	3.94379e-6	4.33119e-7	2.40581e-4	3.25139e-5
chr14	37248007	37248107	7603909	0	+	0.43	(0.424,0.459]	chr14	699649	1	SS5_PROX	SS5_PROX:INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	15	2	2.43027	3.3169400000000002	4.20361	0.00260728	1.79381e-5	0.0623742	9.13813e-4
chrX	72423473	72423573	10370460	0	-	0.34	(0.32,0.36]	chrX	1029654	6	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	23	2	3.00453	3.316515	3.6285	3.97238e-6	1.10958e-6	2.42142e-4	7.61206e-5
chr6	30284786	30284883	4032777	0	-	0.463918	(0.459,0.49]	chr6	365102	26	EXON_MRNA	EXON_MRNA:INTRON	HCG17:ENSG00000280128	ENSG00000270604.5:ENSG00000280128.1	ENST00000453558.1:ENST00000624252.1	TEC	TEC	TEC:lncRNA	TEC:lncRNA	12	38	2	3.14536	3.3162000000000003	3.48704	3.96249e-8	9.59493e-9	3.61112e-6	9.74486e-7
chr1	31921343	31921442	561155	0	-	0.30303	[0,0.32]	chr1	62907	13	INTRON	INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	6	2	3.27638	3.31407	3.35176	0.0118823	0.0102933	0.184357	0.170122
chr1	243209116	243209216	906054	0	-	0.28	[0,0.32]	chr1	100534	79	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5	protein_coding	protein_coding	protein_coding	protein_coding	2	6	2	3.27638	3.31407	3.35176	0.0118823	0.0102933	0.184357	0.170122
chr9	4828517	4828616	5324128	0	+	0.262626	[0,0.32]	chr9	476533	11	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	6	2	3.27638	3.31407	3.35176	0.0118823	0.0102933	0.184357	0.170122
chr9	100001027	100001126	5680038	0	-	0.272727	[0,0.32]	chr9	508820	109	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	6	2	3.27638	3.31407	3.35176	0.0118823	0.0102933	0.184357	0.170122
chr3	8821623	8821723	2161607	0	-	0.39	(0.36,0.392]	chr3	211405	456	INTRON	INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5	protein_coding	protein_coding	protein_coding	protein_coding	4	10	2	3.10651	3.3135950000000003	3.52068	0.00324516	8.23373e-4	0.0730386	0.0238997
chr5	14224342	14224442	3122516	0	+	0.37	(0.36,0.392]	chr5	289176	400	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	3.10651	3.3135950000000003	3.52068	0.00324516	8.23373e-4	0.0730386	0.0238997
chr20	63965840	63965940	9780953	0	-	0.58	(0.57,0.629]	chr20	970129	3	SS5_PROX	SS5_PROX:INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.8927	3.3111699999999997	3.72964	2.63329e-4	1.49677e-6	0.00943086	1.01308e-4
chr10	101818199	101818287	6238400	0	-	0.704545	(0.629,1]	chr10	558318	3	UTR5	UTR5:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.43738	3.31041	4.18344	0.00183228	4.28276e-4	0.0469284	0.0141533
chr1	86947786	86947886	224330	0	+	0.42	(0.392,0.424]	chr1	22669	316	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	2.71627	3.309025	3.90178	0.00513884	7.45573e-6	0.0992178	4.27499e-4
chr20	63964916	63965016	9780943	0	-	0.59	(0.57,0.629]	chr20	970127	2	SS3_PROX	SS3_PROX:INTRON	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.84467	3.3075599999999996	3.77045	0.00224807	9.07674e-5	0.0552099	0.00383949
chr16	14919428	14919528	8331330	0	+	0.69	(0.629,1]	chr16	775989	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	16	2	2.09009	3.30639	4.52269	0.0122043	3.10525e-4	0.194706	0.0106515
chr12	25225613	25225687	7121296	0	-	0.378378	(0.36,0.392]	chr12	653915	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KRAS	ENSG00000133703.14	ENST00000256078.10:ENST00000311936.8:ENST00000690406.1:ENST00000686877.1:ENST00000685328.1:ENST00000693229.1:ENST00000687356.1:ENST00000692768.1:ENST00000688940.1:ENST00000690804.1:ENST00000557334.6:ENST00000688228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	44	2	2.95138	3.3061249999999998	3.66087	4.4828e-9	2.53797e-12	4.81747e-7	4.16121e-10
chr1	41167995	41168095	580692	0	-	0.39	(0.36,0.392]	chr1	65835	51	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	9	21	2	2.63429	3.304195	3.9741	0.00124124	9.72537e-9	0.032836	9.91923e-7
chr1	116916944	116917044	269708	0	+	0.52	(0.49,0.526]	chr1	27829	63	INTRON	INTRON	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	3.03227	3.3024	3.57253	1.31336e-4	2.38382e-5	0.00519725	0.00119556
chr5	112892800	112892900	3278898	0	+	0.46	(0.459,0.49]	chr5	301813	13	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	SRP19:ZRSR2P1	ENSG00000153037.15:ENSG00000212643.3	ENST00000506997.2:ENST00000391338.3:ENST00000512790.6	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	13	36	2	2.74812	3.3021700000000003	3.85622	1.96619e-7	2.91058e-8	1.58254e-5	2.73209e-6
chr1	53006194	53006293	149518	0	+	0.414141	(0.392,0.424]	chr1	18163	98	INTRON	INTRON	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	36	2	3.25024	3.3019999999999996	3.35376	1.19931e-7	6.56023e-10	1.00212e-5	7.89457e-8
chr12	4340449	4340549	6807915	0	+	0.29	[0,0.32]	chr12	621196	29	INTRON	INTRON	TIGAR	ENSG00000078237.7	ENST00000635110.1:ENST00000179259.6:ENST00000537251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	13	2	2.92861	3.299945	3.67128	0.00282946	1.892e-5	0.0650221	9.68233e-4
chr16	87708466	87708548	8618489	0	-	0.609756	(0.57,0.629]	chr16	812842	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000569487.1:ENST00000562155.5:ENST00000622456.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	50	2	3.29776	3.29993	3.3021	1.71529e-8	1.22393e-10	1.66972e-6	1.61545e-8
chr5	59247878	59247978	3474721	0	-	0.5	(0.49,0.526]	chr5	319234	312	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	55	2	2.95427	3.29936	3.64445	4.77037e-9	1e-12	5.12466e-7	1.72912e-10
chr1	32394315	32394403	561999	0	-	0.625	(0.57,0.629]	chr1	63106	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1:ENST00000531222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	3.25564	3.2993449999999998	3.34305	1.26225e-4	8.05796e-5	0.00501499	0.00345544
chr12	122604946	122605016	7039732	0	+	0.457143	(0.424,0.459]	chr12	645441	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000377192.6:ENST00000436959.7:ENST00000541466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	34	2	3.17777	3.2990950000000003	3.42042	4.82575e-7	2.69075e-9	3.58077e-5	2.98805e-7
chr7	151134483	151134568	4582501	0	+	0.705882	(0.629,1]	chr7	413120	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGAP3	ENSG00000133612.19	ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000485904.5:ENST00000494808.1:ENST00000478320.1:ENST00000461065.1:ENST00000467250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.71511	3.298455	3.8818	0.0064023	0.00203575	0.114061	0.0513388
chr1	110407620	110407693	722557	0	-	0.671233	(0.629,1]	chr1	77347	1	CDS	CDS:UTR5:EXON_MRNA	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000531779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	64	2	2.5495	3.29792	4.04634	1.18115e-7	2.97196e-12	9.98371e-6	4.90203e-10
chr20	44885701	44885793	9658603	0	+	0.771739	(0.629,1]	chr20	954162	1	UTR5	UTR5:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000428262.1:ENST00000445830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.65478	3.297395	3.94001	4.80586e-4	7.28993e-6	0.015761	4.19849e-4
chr3	72931585	72931684	1920267	0	+	0.363636	(0.36,0.392]	chr3	194370	21	INTRON	INTRON	GXYLT2	ENSG00000172986.13	ENST00000389617.9:ENST00000498315.1	protein_coding	protein_coding	protein_coding	protein_coding	14	29	2	3.20396	3.29666	3.38936	1.73158e-7	1.29838e-7	1.42451e-5	1.08605e-5
chr21	16589252	16589352	9790803	0	+	0.34	(0.32,0.36]	chr21	970685	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000663661.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000656642.2:ENST00000660908.1:ENST00000667804.1:ENST00000400178.7:ENST00000456342.6:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000663933.1:ENST00000670290.1:ENST00000668830.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1:ENST00000654245.1:ENST00000665504.1:ENST00000441820.5:ENST00000602659.2:ENST00000659483.1:ENST00000661939.1:ENST00000666305.1:ENST00000653518.1:ENST00000666704.1:ENST00000602323.1:ENST00000660609.1:ENST00000655790.1:ENST00000660035.1	lncRNA	lncRNA	lncRNA	lncRNA	10	20	2	2.96464	3.29657	3.6285	6.73055e-5	1.10958e-6	0.00292244	7.61206e-5
chr9	123042316	123042416	5483721	0	+	0.33	(0.32,0.36]	chr9	490121	82	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	14	2	2.83616	3.296315	3.75647	5.78657e-4	6.44559e-5	0.0182895	0.00284455
chr17	82272990	82273090	9034342	0	-	0.7	(0.629,1]	chr17	873302	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000585026.1:ENST00000579308.1:ENST00000581655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.91389	3.29601	3.67813	5.22361e-4	7.89766e-5	0.0167376	0.00339213
chr6	2199566	2199666	3990571	0	-	0.5	(0.49,0.526]	chr6	361452	237	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.60562	3.2947699999999998	3.98392	0.0102832	3.07012e-5	0.170122	0.00150487
chr1	148434869	148434966	756353	0	-	0.628866	(0.57,0.629]	chr1	81641	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01138	ENSG00000274020.4	ENST00000640832.1:ENST00000622328.1:ENST00000639181.1:ENST00000653634.1:ENST00000639159.1:ENST00000658866.1:ENST00000613452.1:ENST00000658938.1:ENST00000614292.1	lncRNA	lncRNA	lncRNA	lncRNA	7	31	2	3.03121	3.293835	3.55646	7.39885e-6	3.507e-7	4.2522e-4	2.66915e-5
chr6	150949030	150949081	3930564	0	+	0.431373	(0.424,0.459]	chr6	357907	1	CDS	CDS:EXON_MRNA	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.90943	3.293195	3.67696	0.00449434	2.06956e-6	0.0875511	1.34728e-4
chr8	143975475	143975575	5307550	0	-	0.63	(0.629,1]	chr8	474457	1	SS3_PROX	SS3_PROX:INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	3.1166	3.292865	3.46913	3.04018e-4	1.41787e-4	0.0105767	0.00568047
chr12	57418253	57418353	7182102	0	-	0.45	(0.424,0.459]	chr12	663024	221	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	4	12	2	3.03857	3.2924350000000002	3.5463	0.00153741	5.63002e-4	0.0389999	0.0178211
chr5	65402178	65402278	3492983	0	-	0.44	(0.424,0.459]	chr5	319825	677	INTRON	INTRON	ADAMTS6	ENSG00000049192.15	ENST00000381055.8:ENST00000381052.8:ENST00000470597.5:ENST00000464680.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	12	2	3.03857	3.2924350000000002	3.5463	0.00153741	5.63002e-4	0.0389999	0.0178211
chr16	57455703	57455803	8400465	0	+	0.47	(0.459,0.49]	chr16	785532	15	INTRON	INTRON	COQ9	ENSG00000088682.14	ENST00000565964.5:ENST00000262507.11:ENST00000564655.5:ENST00000568790.5:ENST00000562734.5:ENST00000564115.5:ENST00000567072.5:ENST00000567933.5:ENST00000562426.5:ENST00000563166.1:ENST00000563391.1:ENST00000567480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	92	2	2.82902	3.29187	3.75472	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	37508209	37508307	9741084	0	-	0.285714	[0,0.32]	chr20	964938	44	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	15	2	2.67572	3.291625	3.90753	0.00446905	1.07493e-6	0.0902927	7.38792e-5
chr12	57519133	57519231	7182459	0	-	0.438776	(0.424,0.459]	chr12	663127	10	INTRON	INTRON	DDIT3	ENSG00000175197.13	ENST00000623876.2:ENST00000547303.5:ENST00000551116.5:ENST00000346473.8:ENST00000552740.5:ENST00000547526.1	protein_coding	protein_coding	protein_coding	protein_coding	3	8	2	2.56804	3.29075	4.01346	0.00778514	0.00769936	0.135524	0.130982
chrX	17562100	17562200	10092925	0	+	0.43	(0.424,0.459]	chrX	1006577	1854	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	3	8	2	2.56804	3.29075	4.01346	0.00778514	0.00769936	0.135524	0.130982
chrX	67545340	67545435	10146507	0	+	0.642105	(0.629,1]	chrX	1011531	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AR	ENSG00000169083.18	ENST00000612452.5:ENST00000374690.9:ENST00000504326.5:ENST00000514029.5:ENST00000613054.2:ENST00000513847.5:ENST00000396044.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	3.03556	3.29031	3.54506	2.20964e-4	2.07184e-4	0.00809923	0.00773072
chr1	1008193	1008279	1110	0	+	0.534884	(0.526,0.57]	chr1	218	1	UTR5	UTR5:EXON_MRNA	ISG15	ENSG00000187608.10	ENST00000624697.4:ENST00000624652.1	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	3.23406	3.290145	3.34623	2.85504e-5	4.5846e-7	0.00139623	3.43779e-5
chr12	49386753	49386853	6903132	0	+	0.44	(0.424,0.459]	chr12	629130	3	SS3_PROX	SS3_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	12	2	2.93877	3.28959	3.64041	0.00115507	8.23195e-4	0.0316008	0.0239037
chr6	73521110	73521209	4102058	0	-	0.626263	(0.57,0.629]	chr6	373695	12	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	64	2	3.28076	3.2892599999999996	3.29776	1.71529e-8	1e-12	1.66972e-6	1.72912e-10
chr3	22382239	22382338	1785754	0	+	0.424242	(0.392,0.424]	chr3	183374	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HMGB1P5	ENSG00000132967.9	ENST00000255320.6:ENST00000451497.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	12	2	2.84278	3.2890699999999997	3.73536	0.00949728	3.4035e-5	0.16275	0.0016098
chr6	30067874	30067971	3751565	0	+	0.360825	(0.36,0.392]	chr6	340463	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5	protein_coding	protein_coding	protein_coding	protein_coding	7	13	2	2.49128	3.2888650000000004	4.08645	0.00169055	1.23682e-4	0.0439489	0.0049353
chr12	46238780	46238880	7152648	0	-	0.42	(0.392,0.424]	chr12	656646	88	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	34	2	3.24267	3.2888200000000003	3.33497	2.58386e-8	2.06449e-8	2.45413e-6	1.98282e-6
chr10	50092061	50092161	5847226	0	+	0.41	(0.392,0.424]	chr10	525843	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	71	2	3.10216	3.288755	3.47535	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	53034518	53034618	9673224	0	+	0.32	[0,0.32]	chr20	955958	608	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	8	16	2	3.06895	3.28742	3.50589	3.20306e-4	1.0194e-5	0.010958	5.54952e-4
chr22	31577184	31577284	9933615	0	+	0.46	(0.459,0.49]	chr22	986727	14	INTRON	INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000476010.5:ENST00000484806.1:ENST00000452250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	36	2	2.97095	3.28704	3.60313	1.05785e-7	3.24494e-8	8.97695e-6	3.03829e-6
chr8	140903954	140904053	5299463	0	-	0.424242	(0.392,0.424]	chr8	473183	128	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	34	2	3.24301	3.286265	3.32952	4.06342e-8	1.39486e-8	3.68224e-6	1.38703e-6
chr5	149496852	149496860	3636054	0	-	0.25	[0,0.32]	chr5	330304	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	24	2	3.18619	3.28589	3.38559	5.31777e-6	2.91374e-7	3.14501e-4	2.2646e-5
chr2	44636211	44636311	1010095	0	+	0.45	(0.424,0.459]	chr2	109418	46	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr2	174655483	174655583	1619967	0	-	0.45	(0.424,0.459]	chr2	167358	210	INTRON	INTRON	WIPF1	ENSG00000115935.18	ENST00000272746.9:ENST00000359761.7:ENST00000409415.7	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr3	4566460	4566560	1751840	0	+	0.45	(0.424,0.459]	chr3	179435	450	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr3	37393518	37393617	1829483	0	+	0.444444	(0.424,0.459]	chr3	185204	68	INTRON	INTRON	APRG1	ENSG00000198590.12	ENST00000654228.1:ENST00000665000.1:ENST00000654714.1:ENST00000662797.1:ENST00000425932.5	lncRNA	lncRNA	lncRNA	lncRNA	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr3	158772683	158772782	2059009	0	+	0.444444	(0.424,0.459]	chr3	205168	17	INTRON	INTRON	MFSD1:ENSG00000240207	ENSG00000118855.21:ENSG00000240207.7	ENST00000486568.5:ENST00000465477.5:ENST00000491804.1:ENST00000465739.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr7	77927815	77927914	4443964	0	+	0.444444	(0.424,0.459]	chr7	399769	38	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000275575.11:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr8	38381289	38381389	5159507	0	-	0.45	(0.424,0.459]	chr8	462093	3	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.23804	3.28472	3.3314	0.00649971	0.00517898	0.114061	0.0992178
chr7	131024159	131024259	4848361	0	-	0.41	(0.392,0.424]	chr7	434475	140	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1	lncRNA	lncRNA	lncRNA	lncRNA	6	16	2	2.30301	3.2836	4.26419	0.0122095	2.06452e-7	0.186377	1.64563e-5
chr12	132788427	132788522	7325759	0	-	0.642105	(0.629,1]	chr12	677148	13	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.84021	3.281955	3.7237	0.00897489	4.75614e-5	0.155806	0.00218277
chr5	93667160	93667260	3539581	0	-	0.38	(0.36,0.392]	chr5	322878	457	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	3.23982	3.2817350000000003	3.32365	2.56702e-4	1.83783e-4	0.00911512	0.00698635
chr6	145907350	145907450	4226809	0	-	0.39	(0.36,0.392]	chr6	384046	42	UTR3	UTR3:EXON_MRNA:INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	3.23982	3.2817350000000003	3.32365	2.56702e-4	1.83783e-4	0.00911512	0.00698635
chr10	27021561	27021660	6086541	0	-	0.323232	(0.32,0.36]	chr10	545552	34	INTRON	INTRON	ANKRD26	ENSG00000107890.17	ENST00000675936.1:ENST00000376087.5:ENST00000676280.1:ENST00000675116.1:ENST00000436985.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	9	2	2.65381	3.281415	3.90902	0.0110381	5.03152e-4	0.179068	0.0161742
chr6	35885523	35885623	4047480	0	-	0.34	(0.32,0.36]	chr6	368915	108	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	9	2	2.65381	3.281415	3.90902	0.0110381	5.03152e-4	0.179068	0.0161742
chr11	32893334	32893434	6365289	0	+	0.74	(0.629,1]	chr11	570142	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.15981	3.279135	3.39846	0.00188809	5.39652e-4	0.0466341	0.0171646
chr17	50719564	50719648	8741649	0	+	0.642857	(0.629,1]	chr17	832089	1	UTR5	UTR5:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	3.15981	3.279135	3.39846	0.00188809	5.39652e-4	0.0466341	0.0171646
chr6	31540021	31540121	4034927	0	-	0.51	(0.49,0.526]	chr6	365745	3	SS5_PROX	SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	12	2	2.4732	3.279065	4.08493	0.00395081	0.00197937	0.0816719	0.0505186
chr7	27801935	27802031	4335240	0	+	0.447917	(0.424,0.459]	chr7	392054	15	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	20	2	2.44709	3.27901	4.11093	6.086e-5	5.36389e-5	0.0027377	0.00243585
chr7	107296051	107296151	4805687	0	-	0.49	(0.459,0.49]	chr7	431522	120	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	2.788	3.278715	3.76943	3.42937e-4	4.60418e-6	0.0119676	2.71998e-4
chr5	146144650	146144709	3634062	0	-	0.440678	(0.424,0.459]	chr5	330092	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	69	2	3.18295	3.278145	3.37334	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	37245975	37246063	8918026	0	-	0.443182	(0.424,0.459]	chr17	855121	4	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	10	2	3.0068	3.2765500000000003	3.5463	0.00341471	0.00153741	0.0729529	0.0389999
chr10	91959154	91959218	5935775	0	+	0.3125	[0,0.32]	chr10	532412	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12:ENST00000471217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	64	2	2.97809	3.275915	3.57374	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	67283901	67284000	4726174	0	-	0.535354	(0.526,0.57]	chr7	423841	92	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	8	30	2	2.61857	3.275185	3.9318	2.07935e-4	3.12159e-9	0.00775513	3.43891e-7
chr7	130637210	130637309	4846809	0	-	0.40404	(0.392,0.424]	chr7	434382	198	INTRON	INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	2.84278	3.27514	3.7075	0.00949728	9.40427e-4	0.16275	0.0266969
chr17	67096674	67096774	8994958	0	-	0.46	(0.459,0.49]	chr17	866784	92	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	8	2	2.66682	3.274645	3.88247	0.0104144	0.00873764	0.170122	0.144342
chr4	88773222	88773321	2952458	0	-	0.424242	(0.392,0.424]	chr4	277785	48	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5:ENST00000513837.5:ENST00000504836.5:ENST00000507352.1:ENST00000502459.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	9	2	2.76656	3.2742500000000003	3.78194	0.0113141	7.47402e-4	0.181488	0.0225125
chr6	165872268	165872365	4269469	0	-	0.412371	(0.392,0.424]	chr6	386910	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	9	2	2.76656	3.2742500000000003	3.78194	0.0113141	7.47402e-4	0.181488	0.0225125
chr4	13603697	13603796	2841343	0	-	0.353535	(0.32,0.36]	chr4	269119	49	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	44	78	2	2.94838	3.274075	3.59977	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	50707554	50707654	8964037	0	-	0.65	(0.629,1]	chr17	862724	1	CDS_START	CDS_START:CDS:EXON_MRNA	ANKRD40	ENSG00000154945.7	ENST00000285243.7:ENST00000507114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	37	2	2.94095	3.274	3.60705	3.40484e-6	1.39283e-6	2.10826e-4	9.42381e-5
chr1	164567805	164567905	322835	0	+	0.4	(0.392,0.424]	chr1	36544	39	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000498497.2:ENST00000559578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	9	2	3.07609	3.273975	3.47186	0.00366403	0.00280132	0.0766409	0.0645347
chr7	7866629	7866729	4306731	0	+	0.42	(0.392,0.424]	chr7	390283	645	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	9	2	3.07609	3.273975	3.47186	0.00366403	0.00280132	0.0766409	0.0645347
chr22	32859872	32859971	9936685	0	+	0.50505	(0.49,0.526]	chr22	987255	6	UTR3	UTR3:EXON_MRNA	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.19165	3.273495	4.35534	0.00771297	1.32027e-6	0.130982	8.96115e-5
chr16	501610	501710	8294942	0	+	0.58	(0.57,0.629]	chr16	770358	43	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	2.6312	3.273365	3.91553	0.00652833	0.00651627	0.116779	0.114061
chr15	34583583	34583651	8127083	0	-	0.602941	(0.57,0.629]	chr15	751976	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000564575.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	3.25564	3.2725600000000004	3.28948	0.00212278	1.26225e-4	0.0532704	0.00501499
chr11	8660332	8660432	6551212	0	-	0.47	(0.459,0.49]	chr11	595560	16	INTRON	INTRON	TRIM66	ENSG00000166436.17	ENST00000402157.7:ENST00000646038.2:ENST00000531498.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	18	2	2.68952	3.2711699999999997	3.85282	0.00206127	2.77093e-6	0.0505307	1.73137e-4
chr8	143919138	143919236	5306930	0	-	0.653061	(0.629,1]	chr8	474285	30	CDS	CDS:EXON_MRNA	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000687971.1:ENST00000693060.1	protein_coding	protein_coding	protein_coding	protein_coding	25	139	2	3.02963	3.2703249999999997	3.51102	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	38651153	38651251	10037599	0	-	0.489796	(0.459,0.49]	chr22	1000660	5	INTRON	INTRON	FAM227A	ENSG00000184949.18	ENST00000535113.7:ENST00000540952.6:ENST00000355830.11:ENST00000544346.5:ENST00000608409.5:ENST00000424706.5:ENST00000484582.1:ENST00000490082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	15	2	3.21669	3.26884	3.32099	5.63284e-4	2.2051e-4	0.0178211	0.00809052
chr16	20734247	20734345	8528063	0	-	0.408163	(0.392,0.424]	chr16	801157	7	UTR3	UTR3:EXON_MRNA:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	15	2	2.55773	3.26865	3.97957	0.00357576	4.95123e-6	0.0781496	2.96695e-4
chr1	16625734	16625824	525203	0	-	0.588889	(0.57,0.629]	chr1	57024	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639481.1:ENST00000639594.1:ENST00000640476.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	23	2	2.93727	3.268505	3.59974	1.46034e-4	8.13785e-6	0.00564049	4.60466e-4
chr11	72817776	72817876	6437793	0	+	0.61	(0.57,0.629]	chr11	581558	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATG16L2	ENSG00000168010.11	ENST00000534905.5:ENST00000321297.10:ENST00000435507.6:ENST00000439504.6:ENST00000542908.5:ENST00000537143.5:ENST00000544490.5:ENST00000540567.1:ENST00000451353.2:ENST00000538842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	23	2	3.05977	3.268435	3.4771	5.16962e-5	2.57549e-5	0.00236852	0.00126626
chrX	77633619	77633712	10383603	0	-	0.397849	(0.392,0.424]	chrX	1030457	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000675908.1:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	62	2	3.26072	3.266715	3.27271	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	46268425	46268525	7152949	0	-	0.58	(0.57,0.629]	chr12	656672	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	73	2	2.84599	3.2663450000000003	3.6867	3.2504e-12	1e-12	5.2986e-10	1.73382e-10
chr18	62574354	62574454	9136516	0	+	0.48	(0.459,0.49]	chr18	881526	4	CDS	CDS:EXON_MRNA	ZCCHC2	ENSG00000141664.10	ENST00000269499.10:ENST00000585873.5:ENST00000586834.1:ENST00000585949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	12	2	3.21669	3.26469	3.31269	0.00308309	5.63284e-4	0.0699986	0.0178211
chr8	85185003	85185102	5015694	0	+	0.383838	(0.36,0.392]	chr8	449922	70	INTRON	INTRON	E2F5	ENSG00000133740.11	ENST00000416274.7:ENST00000418930.6:ENST00000256117.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	23	2	2.63429	3.2641150000000003	3.89394	0.00124124	1.38753e-9	0.032836	1.61538e-7
chr16	70118187	70118285	8425375	0	+	0.489796	(0.459,0.49]	chr16	789209	29	INTRON	INTRON	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000561920.5:ENST00000568530.5:ENST00000398122.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	3.13407	3.26268	3.39129	0.00244536	7.72738e-4	0.0587626	0.0225969
chrX	72712857	72712937	10373369	0	-	0.4875	(0.459,0.49]	chrX	1029928	2	CDS	CDS:EXON_MRNA	PHKA1	ENSG00000067177.15	ENST00000373545.7:ENST00000373542.9:ENST00000339490.7:ENST00000541944.5:ENST00000373539.3	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	3.13407	3.26268	3.39129	0.00244536	7.72738e-4	0.0587626	0.0225969
chrX	53403776	53403834	10345524	0	-	0.465517	(0.459,0.49]	chrX	1027386	1	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	85	239	2	3.17649	3.261935	3.34738	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	39719786	39719834	8712485	0	+	0.666667	(0.629,1]	chr17	825987	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000578373.5:ENST00000583038.5:ENST00000582818.5:ENST00000578630.1:ENST00000584684.1:ENST00000580074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	195	2	3.03533	3.2617700000000003	3.48821	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	8817958	8818058	9570554	0	+	0.3	[0,0.32]	chr20	947300	154	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000378641.7:ENST00000338037.11:ENST00000617005.4:ENST00000612075.4:ENST00000487210.5:ENST00000635929.1:ENST00000637935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	14	2	2.93209	3.261495	3.5909	0.00104757	2.75424e-5	0.0292314	0.00135919
chr15	52678511	52678594	8175514	0	-	0.686747	(0.629,1]	chr15	758361	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM214A	ENSG00000047346.13	ENST00000619572.5:ENST00000534964.6:ENST00000261844.11:ENST00000399202.8:ENST00000562135.5:ENST00000566768.5:ENST00000561490.5:ENST00000561543.5:ENST00000562351.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	3.05121	3.26017	3.46913	0.00356029	3.04018e-4	0.0753972	0.0105767
chr2	119892453	119892553	1131655	0	+	0.42	(0.392,0.424]	chr2	121257	62	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000433888.5:ENST00000430976.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.97135	3.259285	3.54722	0.00130048	1.52245e-4	0.0347373	0.0058275
chr6	111415683	111415782	4166801	0	-	0.40404	(0.392,0.424]	chr6	379441	38	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.97135	3.259285	3.54722	0.00130048	1.52245e-4	0.0347373	0.0058275
chr18	57651447	57651547	9127797	0	+	0.36	(0.32,0.36]	chr18	880663	90	INTRON	INTRON	ENSG00000267040:ENSG00000267787	ENSG00000267040.7:ENSG00000267787.7	ENST00000591854.5:ENST00000592201.1:ENST00000588925.5:ENST00000619899.1	lncRNA	lncRNA	lncRNA	lncRNA	9	18	2	2.90586	3.258985	3.61211	2.30802e-4	2.61769e-6	0.00844011	1.63848e-4
chr6	150976651	150976751	3930846	0	+	0.32	[0,0.32]	chr6	357934	42	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000478643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	12	2	3.06895	3.255025	3.4411	9.57415e-4	3.20306e-4	0.0269423	0.010958
chr2	20735079	20735179	1393039	0	-	0.29	[0,0.32]	chr2	144392	331	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1:ENST00000626491.2:ENST00000432947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	16	2	2.93209	3.25327	3.57445	0.00104757	3.24741e-6	0.0292314	2.02601e-4
chr2	177342098	177342188	1628823	0	-	0.411111	(0.392,0.424]	chr2	168077	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	NFE2L2:ENSG00000213963	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000447413.1:ENST00000611493.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	14	2	2.54178	3.251995	3.96221	8.19729e-4	1.96069e-4	0.0238903	0.00725539
chr20	35869437	35869494	9638345	0	+	0.385965	(0.36,0.392]	chr20	951764	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000486408.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	26	2	3.10549	3.251735	3.39798	1.18357e-6	5.3574e-7	8.11031e-5	3.93507e-5
chr12	12875933	12876020	6826275	0	+	0.528736	(0.526,0.57]	chr12	624048	6	EXON_PSEUDO	EXON_PSEUDO	RPL13AP20	ENSG00000234498.3	ENST00000459725.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	47	2	2.63304	3.2506399999999998	3.86824	1.3384e-6	1.30862e-12	9.08227e-5	2.23129e-10
chr1	246238323	246238423	915839	0	-	0.31	[0,0.32]	chr1	100961	447	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	22	2	2.74204	3.249965	3.75789	5.5075e-6	5.50419e-6	3.25602e-4	3.23814e-4
chr4	53047548	53047648	2899279	0	-	0.44	(0.424,0.459]	chr4	272927	1263	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	4	9	2	2.48643	3.2499450000000003	4.01346	0.00778514	0.00447569	0.130982	0.0903474
chr14	23549150	23549250	7778965	0	-	0.44	(0.424,0.459]	chr14	716321	8	INTRON	INTRON	ZFHX2	ENSG00000136367.15	ENST00000419474.5:ENST00000412565.2	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.23804	3.2496	3.26116	0.00649971	8.43922e-4	0.114061	0.0240064
chr15	88511508	88511586	8270190	0	-	0.448718	(0.424,0.459]	chr15	767831	2	UTR3	UTR3:EXON_MRNA	DET1	ENSG00000140543.15	ENST00000557842.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	19	2	3.20588	3.2491849999999998	3.29249	5.87704e-5	2.52272e-5	0.00266966	0.00124164
chr14	21259731	21259830	7773304	0	-	0.272727	[0,0.32]	chr14	714975	48	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	13	2	2.87966	3.249065	3.61847	4.89226e-4	2.40709e-4	0.0160179	0.00878409
chrX	53374346	53374445	10345215	0	-	0.484848	(0.459,0.49]	chrX	1027334	3	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	2.93658	3.248965	3.56135	1.04307e-4	1.37546e-6	0.00432201	9.34366e-5
chr2	218265830	218265888	1696034	0	-	0.62069	(0.57,0.629]	chr2	173997	1	CDS	CDS:EXON_MRNA	AAMP	ENSG00000127837.10	ENST00000444053.5:ENST00000248450.9:ENST00000475678.5:ENST00000420660.5:ENST00000494720.5:ENST00000489767.5:ENST00000422731.1:ENST00000465442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	3.20738	3.24843	3.28948	0.00279229	0.00212278	0.064521	0.0532704
chr7	30459970	30460041	4674857	0	-	0.507042	(0.49,0.526]	chr7	419574	2	UTR5	UTR5:EXON_MRNA	NOD1	ENSG00000106100.11	ENST00000222823.9:ENST00000434755.5:ENST00000419799.5:ENST00000411552.5:ENST00000413433.5:ENST00000419601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	24	2	2.64626	3.248205	3.85015	1.79577e-4	9.88149e-7	0.0069054	6.99627e-5
chr15	70049903	70049999	8226751	0	-	0.697917	(0.629,1]	chr15	763322	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000557815.1:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000559608.1:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.36786	3.248145	4.12843	0.011144	0.00233396	0.179068	0.0563219
chr2	176117485	176117578	1216558	0	+	0.634409	(0.629,1]	chr2	127570	7	CDS	CDS:EXON_MRNA:INTRON	HOXD10	ENSG00000128710.6	ENST00000490088.2:ENST00000549469.1:ENST00000249501.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.36786	3.248145	4.12843	0.011144	0.00233396	0.179068	0.0563219
chr5	119363010	119363110	3292722	0	+	0.43	(0.424,0.459]	chr5	302636	65	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1:ENST00000503646.1:ENST00000504642.1:ENST00000504771.3:ENST00000415806.2	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.16328	3.24734	3.3314	0.00517898	0.0011776	0.0992178	0.0313499
chr6	21199081	21199176	3732444	0	+	0.431579	(0.424,0.459]	chr6	338659	6	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.16328	3.24734	3.3314	0.00517898	0.0011776	0.0992178	0.0313499
chr8	74314160	74314260	5197416	0	-	0.43	(0.424,0.459]	chr8	465604	543	INTRON	INTRON	JPH1	ENSG00000104369.5	ENST00000342232.5:ENST00000519947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	10	2	3.16328	3.24734	3.3314	0.00517898	0.0011776	0.0992178	0.0313499
chr17	43125092	43125181	8937149	0	-	0.629214	(0.629,1]	chr17	858992	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000493919.5:ENST00000354071.7:ENST00000634433.1:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000642945.1:ENST00000476777.5:ENST00000461798.5:ENST00000489037.1:ENST00000644555.1:ENST00000618469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	47	2	2.94344	3.2468199999999996	3.5502	4.37805e-7	2.5596e-8	3.27173e-5	2.41939e-6
chr19	51694292	51694384	9379661	0	+	0.554348	(0.526,0.57]	chr19	914562	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SPACA6	ENSG00000182310.15	ENST00000646845.1:ENST00000637797.2:ENST00000576093.5:ENST00000573266.5:ENST00000571328.1:ENST00000574072.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	32	2	2.97888	3.24484	3.5108	4.42989e-6	7.29042e-8	2.62117e-4	6.33192e-6
chr10	828601	828695	6036521	0	-	0.382979	(0.36,0.392]	chr10	541738	15	INTRON	INTRON	LARP4B	ENSG00000107929.16	ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	10	2	3.20352	3.244565	3.28561	0.0019364	0.0015215	0.0476694	0.0397018
chr7	80519463	80519563	4450577	0	+	0.39	(0.36,0.392]	chr7	399980	313	INTRON	INTRON	CD36	ENSG00000135218.19	ENST00000435819.5	protein_coding	protein_coding	protein_coding	protein_coding	4	10	2	3.20352	3.244565	3.28561	0.0019364	0.0015215	0.0476694	0.0397018
chrX	149944995	149945070	10234396	0	+	0.56	(0.526,0.57]	chrX	1019360	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EOLA2-DT	ENSG00000235703.7	ENST00000670799.1:ENST00000654890.1:ENST00000425602.2:ENST00000449111.5:ENST00000444489.5:ENST00000669126.1	lncRNA	lncRNA	lncRNA	lncRNA	6	22	2	2.6815	3.24237	3.80324	3.72283e-4	2.21846e-6	0.0125803	1.43493e-4
chr16	70509968	70510021	8581776	0	-	0.54717	(0.526,0.57]	chr16	809499	2	CDS	CDS:UTR3:EXON_MRNA	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000562200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	2.89374	3.2421800000000003	3.59062	8.33799e-5	1.36164e-8	0.00355751	1.35989e-6
chr2	36884475	36884575	1414505	0	-	0.41	(0.392,0.424]	chr2	147033	4	SS3_PROX	SS3_PROX:INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	11	2	3.07609	3.24202	3.40795	0.00280132	5.07532e-4	0.0645347	0.0162102
chr6	165895737	165895837	4269705	0	-	0.57	(0.526,0.57]	chr6	386915	20	EXON_MRNA	EXON_MRNA:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000672224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	60	2	3.18664	3.2419450000000003	3.29725	7.16711e-11	2.52121e-12	9.84335e-9	4.18867e-10
chr19	32422527	32422626	9323827	0	+	0.393939	(0.392,0.424]	chr19	903646	95	INTRON	INTRON	DPY19L3	ENSG00000178904.19	ENST00000592503.5:ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000586427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	16	2	2.58183	3.2418050000000003	3.90178	0.00150665	7.45573e-6	0.0395097	4.27499e-4
chr10	24584710	24584810	6082406	0	-	0.51	(0.49,0.526]	chr10	545194	3	CDS	CDS:UTR3:EXON_MRNA	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	26	2	3.12681	3.2413999999999996	3.35599	8.09548e-5	4.23918e-7	0.00346783	3.18839e-5
chr4	48556877	48556977	2893852	0	-	0.35	(0.32,0.36]	chr4	272473	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000507873.7:ENST00000503238.6:ENST00000514617.5:ENST00000507711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	10	2	2.77086	3.240185	3.70951	0.00201951	0.00179457	0.0510613	0.0449876
chr11	108841395	108841476	6489365	0	+	0.345679	(0.32,0.36]	chr11	586752	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5:ENST00000533198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	58	2	3.12651	3.23984	3.35317	1.33105e-12	1e-12	2.26502e-10	1.73382e-10
chr8	47773785	47773882	5164325	0	-	0.474227	(0.459,0.49]	chr8	462690	8	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	2.62233	3.239275	3.85622	0.0010962	2.91058e-8	0.030375	2.73209e-6
chrX	47462529	47462629	10337007	0	-	0.53	(0.526,0.57]	chrX	1025990	57	INTRON	INTRON	ZNF41	ENSG00000147124.13	ENST00000684689.1:ENST00000377065.8:ENST00000313116.11:ENST00000432977.1:ENST00000465311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	154	2	3.04114	3.23888	3.43662	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	89437417	89437517	8624223	0	-	0.56	(0.526,0.57]	chr16	813747	57	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	37	2	2.96391	3.23879	3.51367	2.15148e-7	4.43614e-8	1.70146e-5	4.04814e-6
chr1	186344510	186344578	824346	0	-	0.411765	(0.392,0.424]	chr1	91587	3	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	23	48	2	2.78133	3.2386150000000002	3.6959	1.16247e-8	1e-12	1.17396e-6	1.72912e-10
chr10	113044923	113045023	5984585	0	+	0.51	(0.49,0.526]	chr10	537575	44	INTRON	INTRON	TCF7L2	ENSG00000148737.17	ENST00000355995.9:ENST00000627217.3:ENST00000534894.5:ENST00000536810.5:ENST00000538897.5:ENST00000542695.5:ENST00000543371.5:ENST00000369397.8:ENST00000355717.9:ENST00000352065.10:ENST00000369395.6:ENST00000545257.6:ENST00000629706.2:ENST00000346198.5	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.31862	3.23788	4.15714	0.0101596	0.00319561	0.166645	0.0699484
chr17	58007205	58007273	8970278	0	-	0.661765	(0.629,1]	chr17	863524	2	UTR5	UTR5:EXON_MRNA	SRSF1	ENSG00000136450.13	ENST00000258962.5:ENST00000582730.6:ENST00000581979.5:ENST00000584773.5:ENST00000585096.1:ENST00000583741.1:ENST00000578430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	48	2	3.16128	3.23739	3.3135	2.86088e-7	2.07951e-8	2.19976e-5	1.99532e-6
chr17	63557186	63557286	8774930	0	+	0.35	(0.32,0.36]	chr17	834932	41	INTRON	INTRON	DCAF7	ENSG00000136485.16	ENST00000431926.7:ENST00000690417.1:ENST00000688972.1:ENST00000686337.1:ENST00000614556.5:ENST00000690481.1:ENST00000693226.1:ENST00000686787.1:ENST00000691063.1:ENST00000415273.2:ENST00000688437.1:ENST00000615512.2:ENST00000688888.1:ENST00000691458.1:ENST00000692877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	17	2	2.79759	3.23738	3.67717	2.77506e-4	8.39038e-6	0.00987376	4.72997e-4
chr2	169746027	169746127	1202413	0	+	0.5	(0.49,0.526]	chr2	126060	41	INTRON	INTRON	KLHL23	ENSG00000213160.10	ENST00000498202.6:ENST00000272797.8:ENST00000602521.1:ENST00000392647.7:ENST00000437875.1:ENST00000494387.1:ENST00000448589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	2.76614	3.2365649999999997	3.70699	0.00430264	6.7032e-6	0.0867442	3.89775e-4
chr11	122349439	122349539	6765723	0	-	0.5	(0.49,0.526]	chr11	617629	401	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000649216.1:ENST00000670396.1:ENST00000649293.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000527474.5:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000648084.1:ENST00000528381.1:ENST00000656868.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	4	17	2	2.85771	3.2359	3.61409	0.00321931	1.16311e-5	0.0703477	6.41146e-4
chr7	100367831	100367926	4491004	0	+	0.578947	(0.57,0.629]	chr7	404139	1	SS5_PROX	SS5_PROX:INTRON	PILRA	ENSG00000085514.16	ENST00000432297.6	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.84467	3.2348	3.62493	0.00224807	4.60022e-6	0.0552099	2.71925e-4
chrM	15224	15319	10480522	0	+	0.452632	(0.424,0.459]	chrM	1039012	5	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	12	27	2	2.65605	3.23473	3.81341	9.68887e-6	2.32912e-7	5.37523e-4	1.87449e-5
chr7	100096080	100096167	4788619	0	-	0.609195	(0.57,0.629]	chr7	429129	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	37	2	3.02308	3.231305	3.43953	1.43101e-6	3.8051e-8	9.66998e-5	3.51532e-6
chr5	390588	390688	3108104	0	+	0.62	(0.57,0.629]	chr5	287807	135	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	2.17523	3.23128	4.28733	0.00131222	8.34421e-7	0.0350189	5.98026e-5
chr6	56618862	56618960	4092053	0	-	0.418367	(0.392,0.424]	chr6	372957	10	CDS	CDS:EXON_MRNA:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5:ENST00000370765.11:ENST00000522360.5	protein_coding	protein_coding	protein_coding	protein_coding	13	27	2	2.81085	3.2306999999999997	3.65055	3.24e-6	2.34553e-7	1.99502e-4	1.88437e-5
chr11	70302112	70302212	6434064	0	+	0.61	(0.57,0.629]	chr11	580702	293	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.95732	3.2301349999999998	3.50295	0.00848479	6.5426e-4	0.140721	0.0199608
chr22	38293748	38293819	10035133	0	-	0.605634	(0.57,0.629]	chr22	1000244	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000366216.6:ENST00000431632.5:ENST00000495232.5:ENST00000403904.5:ENST00000431611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.95732	3.2301349999999998	3.50295	0.00848479	6.5426e-4	0.140721	0.0199608
chr19	2128490	2128589	9405662	0	-	0.79798	(0.629,1]	chr19	919650	9	INTRON	INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	2.88499	3.229355	3.57372	6.26713e-5	2.632e-8	0.00277665	2.49837e-6
chr3	121696534	121696633	2404752	0	-	0.484848	(0.459,0.49]	chr3	230482	29	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695040.1:ENST00000695108.1:ENST00000695009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	55	2	3.22909	3.229145	3.2292	6.42291e-11	1.73563e-11	8.88826e-9	2.57971e-9
chr11	62887600	62887689	6408893	0	+	0.561798	(0.526,0.57]	chr11	575486	1	SS3_PROX	SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	3.04579	3.22764	3.40949	0.00141136	0.00107756	0.0368074	0.0299955
chr5	173004490	173004589	3393384	0	+	0.393939	(0.392,0.424]	chr5	311332	93	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	8	19	2	2.96229	3.227585	3.49288	2.64732e-4	2.56494e-6	0.00936619	1.60796e-4
chr17	75252492	75252591	9009378	0	-	0.444444	(0.424,0.459]	chr17	869027	31	INTRON	INTRON	GGA3	ENSG00000125447.18	ENST00000621217.4:ENST00000537686.6:ENST00000538886.5:ENST00000621870.4:ENST00000613421.4:ENST00000649398.1:ENST00000578348.5:ENST00000582486.5:ENST00000582717.5:ENST00000580799.2:ENST00000582821.5:ENST00000584243.5:ENST00000577435.5:ENST00000582376.1:ENST00000579743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	16	2	2.78956	3.22742	3.66528	5.51568e-4	4.70625e-5	0.0175042	0.00217308
chr4	98366456	98366556	2695456	0	+	0.49	(0.459,0.49]	chr4	256550	135	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000380158.8:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000511379.5:ENST00000514122.5:ENST00000453712.6:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9:ENST00000503745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	23	2	2.70254	3.2271	3.75166	5.05409e-4	2.02903e-7	0.0162415	1.62135e-5
chr5	43074207	43074307	3166646	0	+	0.56	(0.526,0.57]	chr5	292320	56	INTRON	INTRON	ZNF131	ENSG00000172262.12	ENST00000503599.5:ENST00000499046.1:ENST00000508795.1:ENST00000507393.1:ENST00000514169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	13	2	2.75687	3.226055	3.69524	0.00442955	3.03531e-4	0.0875511	0.0107298
chr19	17843379	17843435	9456613	0	-	0.571429	(0.57,0.629]	chr19	929826	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JAK3	ENSG00000105639.20	ENST00000527031.5:ENST00000458235.7:ENST00000527670.5:ENST00000534444.1:ENST00000526008.5:ENST00000528293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	15	2	3.03059	3.22551	3.42043	9.02612e-4	7.55212e-4	0.0258498	0.0225125
chr14	50458088	50458187	7822006	0	-	0.414141	(0.392,0.424]	chr14	720361	11	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000682126.1:ENST00000013125.9:ENST00000557390.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	3.15287	3.22526	3.29765	0.00224427	1.04913e-4	0.0552099	0.00432856
chr17	57456128	57456227	8750463	0	+	0.515152	(0.49,0.526]	chr17	833037	110	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	17	2	2.54311	3.225205	3.9073	0.00102077	7.31994e-5	0.0276375	0.00316256
chr13	50046914	50047013	7527260	0	-	0.313131	[0,0.32]	chr13	692368	13	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1:ENST00000458725.7:ENST00000692504.1:ENST00000443587.6:ENST00000686700.1:ENST00000691340.1:ENST00000433070.7:ENST00000659339.1	lncRNA	lncRNA	lncRNA	lncRNA	18	33	2	2.68798	3.224555	3.76113	3.90532e-5	1.50979e-12	0.00184045	2.54231e-10
chr15	50929008	50929088	7976379	0	+	0.35	(0.32,0.36]	chr15	737868	1	CDS	CDS:EXON_MRNA	AP4E1	ENSG00000081014.11	ENST00000561441.5:ENST00000561393.5:ENST00000558439.5:ENST00000261842.10:ENST00000560508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	17	2	2.24435	3.224425	4.2045	0.0121019	2.9798e-8	0.185048	2.81358e-6
chr4	109143542	109143642	2991557	0	-	0.34	(0.32,0.36]	chr4	280109	930	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	25	2	2.96429	3.2229099999999997	3.48153	1.98765e-6	6.79025e-7	1.29763e-4	4.92095e-5
chr9	132317343	132317443	5754475	0	-	0.35	(0.32,0.36]	chr9	516416	51	INTRON	INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	14	25	2	2.96429	3.2229099999999997	3.48153	1.98765e-6	6.79025e-7	1.29763e-4	4.92095e-5
chr7	138584796	138584851	4565980	0	+	0.363636	(0.36,0.392]	chr7	410193	2	CDS	CDS:EXON_MRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.85081	3.2228950000000003	3.59498	0.00352888	1.28326e-5	0.0751127	6.90028e-4
chr6	165654212	165654312	4267275	0	-	0.5	(0.49,0.526]	chr6	386857	429	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	15	2	2.81323	3.22285	3.63247	8.35112e-4	3.91053e-4	0.0240064	0.0131535
chr6	38138967	38139066	3773783	0	+	0.444444	(0.424,0.459]	chr6	345102	219	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000373389.5:ENST00000440482.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	21	2	3.1045	3.22274	3.34098	4.34131e-5	6.42672e-6	0.00200039	3.74918e-4
chr5	38986689	38986788	3447520	0	-	0.40404	(0.392,0.424]	chr5	317384	43	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	28	2	2.77897	3.220965	3.66296	9.65911e-6	2.12583e-8	5.38715e-4	2.06917e-6
chr18	23784457	23784557	9081566	0	+	0.47	(0.459,0.49]	chr18	877485	3	SS5_PROX	SS5_PROX:INTRON	LAMA3	ENSG00000053747.17	ENST00000313654.14:ENST00000585600.5:ENST00000399516.7	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	6	17	2	2.57643	3.2179	3.85937	3.83201e-4	1.54766e-4	0.0129331	0.00599593
chr17	30868232	30868332	8692516	0	+	0.31	[0,0.32]	chr17	823010	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	17	31	2	2.41291	3.21725	4.02159	2.49254e-4	1e-12	0.0089494	1.72912e-10
chr1	164740031	164740131	324570	0	+	0.35	(0.32,0.36]	chr1	36599	552	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000559578.1:ENST00000560469.5:ENST00000496120.6:ENST00000468104.5:ENST00000560641.5:ENST00000482110.5:ENST00000558796.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	11	2	2.83616	3.217095	3.59803	0.00267453	5.78657e-4	0.0637459	0.0182895
chr12	55966868	55966938	6919688	0	+	0.714286	(0.629,1]	chr12	631907	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000555357.1:ENST00000554619.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.55191	3.216855	3.8818	0.0064023	0.004809	0.114061	0.0964485
chr2	131726096	131726194	1147428	0	+	0.367347	(0.36,0.392]	chr2	122821	31	INTRON	INTRON	NBEAP2	ENSG00000197927.13	ENST00000623058.3	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	4	10	2	2.97461	3.21673	3.45885	0.00698532	4.24507e-4	0.123839	0.0140677
chr2	200957472	200957544	1668754	0	-	0.402778	(0.392,0.424]	chr2	171468	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000467605.5:ENST00000410039.5:ENST00000457595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	56	2	2.74445	3.21657	3.68869	5.62882e-9	1e-12	5.93866e-7	1.73382e-10
chr16	87709264	87709344	8618499	0	-	0.65	(0.629,1]	chr16	812848	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000569487.1:ENST00000562155.5:ENST00000622456.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	85	441	2	3.08072	3.21579	3.35086	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	25354602	25354701	4951252	0	+	0.414141	(0.392,0.424]	chr8	443476	24	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000467709.6:ENST00000481728.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	42	2	3.12282	3.215635	3.30845	1.59349e-9	6.26207e-10	1.83459e-7	7.59746e-8
chr13	48428031	48428131	7376577	0	+	0.5	(0.49,0.526]	chr13	681714	462	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	2.89086	3.214665	3.53847	1.23424e-5	5.72919e-8	6.65348e-4	5.03026e-6
chr1	155187140	155187224	774153	0	-	0.571429	(0.57,0.629]	chr1	85172	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MUC1	ENSG00000185499.17	ENST00000620103.4:ENST00000338684.9:ENST00000610359.4:ENST00000614519.4:ENST00000615517.4:ENST00000462317.5:ENST00000485118.5:ENST00000368392.7:ENST00000368393.7:ENST00000438413.5:ENST00000457295.6:ENST00000462215.5:ENST00000610468.4:ENST00000337604.6:ENST00000342482.8:ENST00000343256.9:ENST00000368389.6:ENST00000368390.7:ENST00000368396.8:ENST00000368398.7:ENST00000467134.5:ENST00000471283.5:ENST00000498431.5:ENST00000468978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	14	2	1.96082	3.214545	4.46827	0.0095418	5.2773e-4	0.163443	0.0167673
chr1	26473205	26473297	82875	0	+	0.717391	(0.629,1]	chr1	8688	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000468388.5:ENST00000479815.5:ENST00000460563.5:ENST00000464888.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5:ENST00000466194.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	2.09009	3.21454	4.33899	0.0122043	8.51164e-4	0.194706	0.0245129
chr6	169519237	169519337	4278268	0	-	0.34	(0.32,0.36]	chr6	387493	604	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	12	2	2.88892	3.214135	3.53935	0.00121159	3.19299e-4	0.0326347	0.010926
chr10	63512743	63512843	6149392	0	-	0.35	(0.32,0.36]	chr10	550104	469	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	14	2	2.98798	3.2136	3.43922	4.39493e-4	1.15221e-4	0.0145031	0.00464739
chr17	82155478	82155577	9033365	0	-	0.616162	(0.57,0.629]	chr17	873109	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000327026.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	30	2	3.19526	3.2133900000000004	3.23152	2.48707e-4	4.89299e-8	0.0089842	4.45006e-6
chr3	171140453	171140509	2491797	0	-	0.642857	(0.629,1]	chr3	238740	2	CDS	CDS:EXON_MRNA	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.904	3.213345	4.52269	0.0125401	3.10525e-4	0.199657	0.0106515
chr2	196525951	196526051	1657807	0	-	0.49	(0.459,0.49]	chr2	170344	322	INTRON	INTRON	HECW2	ENSG00000138411.13	ENST00000644978.2:ENST00000260983.8:ENST00000644030.1:ENST00000644256.1:ENST00000645770.1:ENST00000427457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	10	2	2.22001	3.2131749999999997	4.20634	0.0100465	0.00276656	0.170122	0.0641652
chr12	57419849	57419948	7182118	0	-	0.494949	(0.49,0.526]	chr12	663024	237	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.71913	3.2130599999999996	3.70699	0.00122099	6.7032e-6	0.0323167	3.89775e-4
chr3	129901804	129901903	1990582	0	+	0.525253	(0.49,0.526]	chr3	200497	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMCC1-DT	ENSG00000271270.8	ENST00000605830.6:ENST00000686063.1:ENST00000690344.1:ENST00000605698.2:ENST00000603884.5:ENST00000671446.1:ENST00000653304.1:ENST00000604747.1	lncRNA	lncRNA	lncRNA	lncRNA	3	13	2	3.16684	3.21289	3.25894	0.00470616	2.88576e-4	0.0901733	0.010254
chr1	211816169	211816269	852223	0	-	0.5	(0.49,0.526]	chr1	94912	226	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.60562	3.2122450000000002	3.81887	0.0102832	1.1017e-4	0.170122	0.00452792
chr1	88807377	88807443	227816	0	+	0.424242	(0.392,0.424]	chr1	22837	2	CDS	CDS:EXON_MRNA	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	12	24	2	2.2514	3.2110950000000003	4.17079	6.49696e-4	7.69772e-9	0.0196104	7.98016e-7
chr20	63966140	63966231	9780956	0	-	0.56044	(0.526,0.57]	chr20	970131	1	CDS	CDS:EXON_MRNA	ZNF512B	ENSG00000196700.9	ENST00000369888.6	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	3.09965	3.21099	3.32233	1.36681e-4	9.3122e-5	0.00539233	0.00393198
chr15	42696679	42696779	7957602	0	+	0.52	(0.49,0.526]	chr15	735937	4	INTRON	INTRON	STARD9	ENSG00000159433.12	ENST00000290607.12:ENST00000562619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	13	2	2.51463	3.210965	3.9073	0.0130492	7.31994e-5	0.198111	0.00316256
chr8	213622	213710	5104168	0	-	0.522727	(0.49,0.526]	chr8	457723	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL23AP53	ENSG00000223508.5	ENST00000606975.1:ENST00000521854.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	13	2	2.51463	3.210965	3.9073	0.0130492	7.31994e-5	0.198111	0.00316256
chr10	100407840	100407939	5957191	0	+	0.494949	(0.49,0.526]	chr10	534513	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	OLMALINC	ENSG00000235823.4	ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000664100.1:ENST00000657262.1:ENST00000658059.1:ENST00000664516.1	lncRNA	lncRNA	lncRNA	lncRNA	2	10	2	3.16684	3.2104049999999997	3.25397	0.00470616	0.00365962	0.0901733	0.0766409
chr11	10508226	10508322	6562553	0	-	0.5	(0.49,0.526]	chr11	596560	1	UTR5	UTR5:EXON_MRNA	MTRNR2L8	ENSG00000255823.5	ENST00000536684.3	protein_coding	protein_coding	protein_coding	protein_coding	2	10	2	3.16684	3.2104049999999997	3.25397	0.00470616	0.00365962	0.0901733	0.0766409
chr2	37235107	37235204	991747	0	+	0.505155	(0.49,0.526]	chr2	108021	25	INTRON	INTRON	NDUFAF7	ENSG00000003509.16	ENST00000455230.5:ENST00000002125.9:ENST00000474154.5:ENST00000336237.10:ENST00000431821.5:ENST00000469831.1:ENST00000416653.5:ENST00000483999.5:ENST00000439218.5:ENST00000432075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	3.16657	3.21027	3.25397	0.00365962	4.17868e-5	0.0766409	0.00194135
chr6	1938590	1938690	3987952	0	-	0.46	(0.459,0.49]	chr6	361413	77	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000531690.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	19	2	2.85096	3.210245	3.56953	1.61211e-4	4.08493e-5	0.00615251	0.00193677
chr1	214296700	214296800	430429	0	+	0.41	(0.392,0.424]	chr1	46272	149	INTRON	INTRON	SMYD2	ENSG00000143499.14	ENST00000491455.5:ENST00000471645.5:ENST00000366957.10:ENST00000460580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	10	2	2.63838	3.21016	3.78194	0.00636373	7.47402e-4	0.114061	0.0225125
chrM	1124	1219	10480393	0	+	0.494737	(0.49,0.526]	chrM	1038986	6	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	361	1077	2	3.16995	3.209515	3.24908	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	8237274	8237374	8862900	0	-	0.51	(0.49,0.526]	chr17	848214	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTC1	ENSG00000178971.16	ENST00000651323.1:ENST00000449476.7:ENST00000643543.1:ENST00000581671.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	23	2	2.81323	3.2093350000000003	3.60544	8.35112e-4	3.71754e-7	0.0240064	2.84996e-5
chr8	47318495	47318595	4980397	0	+	0.44	(0.424,0.459]	chr8	447010	241	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000523814.5:ENST00000518074.5:ENST00000522900.5:ENST00000297423.9:ENST00000521550.5:ENST00000517824.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522222.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	14	2	2.2141	3.2088550000000002	4.20361	0.00829078	1.79381e-5	0.145308	9.13813e-4
chr1	180011928	180012001	366913	0	+	0.383562	(0.36,0.392]	chr1	39690	1	CDS	CDS:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	33	61	2	3.19771	3.208425	3.21914	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43648733	43648832	8939120	0	-	0.515152	(0.49,0.526]	chr17	859128	47	INTRON	INTRON	MEOX1	ENSG00000005102.14	ENST00000318579.9:ENST00000549132.2:ENST00000393661.2	protein_coding	protein_coding	protein_coding	protein_coding	12	40	2	3.01644	3.208255	3.40007	4.32743e-7	1.6923e-9	3.25066e-5	1.94002e-7
chr11	65112067	65112156	6414340	0	+	0.606742	(0.57,0.629]	chr11	576794	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM7SF2	ENSG00000149809.17	ENST00000526809.5:ENST00000524986.5:ENST00000279263.14:ENST00000534371.5:ENST00000533766.5:ENST00000528026.5:ENST00000533646.1:ENST00000529601.5:ENST00000525385.5:ENST00000345348.9:ENST00000531321.5:ENST00000529292.5:ENST00000529414.5:ENST00000526085.5:ENST00000530650.5:ENST00000530750.5:ENST00000524690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	22	2	3.02675	3.208135	3.38952	9.03508e-5	4.23084e-5	0.00384169	0.00196405
chr1	10416986	10417051	30210	0	+	0.430769	(0.424,0.459]	chr1	3239	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000493288.1:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	14	2	2.93877	3.20805	3.47733	8.23195e-4	2.01844e-4	0.0239037	0.00755335
chr19	55092544	55092598	9539811	0	-	0.833333	(0.629,1]	chr19	943858	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8:ENST00000590268.1:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	96	2	2.82503	3.20431	3.58359	1.30331e-11	1e-12	1.97361e-9	1.73382e-10
chr17	9353998	9354098	8867643	0	-	0.27	[0,0.32]	chr17	848794	807	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	7	2	3.12911	3.202745	3.27638	0.0118823	0.00484145	0.184357	0.0964485
chr6	143311900	143312000	3902124	0	+	0.28	[0,0.32]	chr6	356268	273	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	3	7	2	3.12911	3.202745	3.27638	0.0118823	0.00484145	0.184357	0.0964485
chrX	24789235	24789335	10106911	0	+	0.32	[0,0.32]	chrX	1007707	135	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	7	2	3.12911	3.202745	3.27638	0.0118823	0.00484145	0.184357	0.0964485
chr9	113486093	113486193	5468239	0	+	0.38	(0.36,0.392]	chr9	488392	4	SS5_PROX	SS5_PROX:INTRON	RGS3	ENSG00000138835.23	ENST00000374140.6:ENST00000350696.9:ENST00000695401.1:ENST00000478599.5:ENST00000317613.10:ENST00000488259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	12	2	2.89308	3.2027099999999997	3.51234	0.00845227	3.96166e-5	0.140721	0.00188516
chr15	92031219	92031319	8084203	0	+	0.32	[0,0.32]	chr15	747793	893	INTRON	INTRON	SLCO3A1	ENSG00000176463.14	ENST00000318445.11:ENST00000553653.5:ENST00000424469.2:ENST00000555769.5:ENST00000556649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	7	2	3.05093	3.201345	3.35176	0.0102933	0.00583312	0.170122	0.107081
chr19	7991815	7991831	9426487	0	-	0.125	[0,0.32]	chr19	923434	1	UTR5	UTR5:EXON_MRNA	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	3	7	2	3.05093	3.201345	3.35176	0.0102933	0.00583312	0.170122	0.107081
chr14	100372890	100372988	7914253	0	-	0.469388	(0.459,0.49]	chr14	729584	20	INTRON	INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5:ENST00000553934.1:ENST00000553581.1:ENST00000555464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	15	2	2.43515	3.2010050000000003	3.96686	0.00338763	5.54129e-5	0.0728314	0.00252909
chr12	47749389	47749462	7154814	0	-	0.493151	(0.49,0.526]	chr12	657101	1	CDS	CDS:UTR3:EXON_MRNA	RAPGEF3	ENSG00000079337.16	ENST00000449771.7:ENST00000405493.6:ENST00000547856.5:ENST00000549151.5:ENST00000479866.5:ENST00000482843.5:ENST00000389212.7:ENST00000548919.5:ENST00000395358.7:ENST00000495465.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	2.76925	3.20086	3.63247	3.91053e-4	6.0183e-5	0.0131535	0.00268144
chr6	30671035	30671114	4033800	0	-	0.481013	(0.459,0.49]	chr6	365360	1	CDS	CDS:EXON_MRNA	DHX16	ENSG00000204560.10	ENST00000376442.8:ENST00000415603.1	protein_coding	protein_coding	protein_coding	protein_coding	73	196	2	2.96751	3.2005850000000002	3.43366	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	108165183	108165283	718539	0	-	0.41	(0.392,0.424]	chr1	76724	35	INTRON	INTRON	SLC25A24	ENSG00000085491.17	ENST00000565488.6:ENST00000264128.13:ENST00000370041.4:ENST00000648874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	2.77414	3.19939	3.62464	9.93591e-4	1.11057e-4	0.0276375	0.00448562
chr5	146459737	146459837	3350008	0	+	0.41	(0.392,0.424]	chr5	307588	4	SS5_PROX	SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000513298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	14	2	2.77414	3.19939	3.62464	9.93591e-4	1.11057e-4	0.0276375	0.00448562
chr1	231563464	231563546	455528	0	+	0.463415	(0.459,0.49]	chr1	49437	1	EXON_MRNA	EXON_MRNA:INTRON	TSNAX	ENSG00000116918.15	ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr12	101711495	101711595	6999399	0	+	0.48	(0.459,0.49]	chr12	639733	130	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr19	3562961	3563060	9410276	0	-	0.484848	(0.459,0.49]	chr19	920270	55	INTRON	INTRON	MFSD12	ENSG00000161091.14	ENST00000585814.1:ENST00000592652.1:ENST00000591878.1:ENST00000588626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr21	16295160	16295260	9787842	0	+	0.46	(0.459,0.49]	chr21	970598	31	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6	lncRNA	lncRNA	lncRNA	lncRNA	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr3	44347086	44347185	1854414	0	+	0.464646	(0.459,0.49]	chr3	187600	58	INTRON	INTRON	TCAIM	ENSG00000179152.20	ENST00000417237.5:ENST00000383746.7:ENST00000494638.5:ENST00000396078.7:ENST00000462230.5:ENST00000412611.6:ENST00000444602.2:ENST00000342649.9:ENST00000431657.5:ENST00000417768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr7	99087713	99087812	4785888	0	-	0.464646	(0.459,0.49]	chr7	428727	64	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	9	2	3.00648	3.1988849999999998	3.39129	0.0112903	0.00244536	0.181488	0.0587626
chr1	17419817	17419916	526437	0	-	0.484848	(0.459,0.49]	chr1	57340	28	INTRON	INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chr1	51781909	51781983	144798	0	+	0.459459	(0.459,0.49]	chr1	17723	2	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chr14	88834321	88834420	7734398	0	+	0.464646	(0.459,0.49]	chr14	709680	2	INTRON	INTRON	TTC8	ENSG00000165533.19	ENST00000556077.5:ENST00000622513.4:ENST00000380656.7:ENST00000556567.5:ENST00000338104.10:ENST00000346301.8:ENST00000354441.10:ENST00000555057.5:ENST00000556651.5:ENST00000554686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chr15	78888142	78888239	8049673	0	+	0.474227	(0.459,0.49]	chr15	744089	4	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chr3	50118550	50118644	1869747	0	+	0.478723	(0.459,0.49]	chr3	190016	2	UTR3	UTR3:EXON_MRNA	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6:ENST00000464988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chrX	48983870	48983970	10340178	0	-	0.48	(0.459,0.49]	chrX	1026627	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GRIPAP1	ENSG00000068400.13	ENST00000619149.4:ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	9	2	3.08436	3.198525	3.31269	0.00939464	0.00308309	0.161654	0.0699986
chr1	43164723	43164805	589373	0	-	0.463415	(0.459,0.49]	chr1	66251	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBNA1BP2	ENSG00000117395.13	ENST00000431635.6:ENST00000236051.3:ENST00000463906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	23	2	2.28388	3.197455	4.11103	0.00155474	8.64387e-8	0.0405296	7.5e-6
chr10	68789709	68789777	5873469	0	+	0.338235	(0.32,0.36]	chr10	526977	1	CDS	CDS:UTR3:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000265872.11:ENST00000540210.5:ENST00000480627.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	21	2	2.90586	3.196955	3.48805	2.30802e-4	1.68534e-7	0.00844011	1.37821e-5
chr17	5379470	5379569	8854163	0	-	0.565657	(0.526,0.57]	chr17	846369	80	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573169.1:ENST00000576708.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	13	43	2	3.037	3.196425	3.3558500000000002	7.04464e-8	1.74187e-9	6.12176e-6	1.98797e-7
chr19	44748128	44748228	9358345	0	+	0.55	(0.526,0.57]	chr19	910288	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCL3	ENSG00000069399.15	ENST00000403534.7:ENST00000487394.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	5	19	2	3.1573	3.1956800000000003	3.23406	4.45312e-4	2.85504e-5	0.0146627	0.00139623
chr3	132587548	132587647	2437442	0	-	0.40404	(0.392,0.424]	chr3	233852	76	INTRON	INTRON	ACAD11	ENSG00000240303.8	ENST00000496418.5:ENST00000264990.11:ENST00000485198.5:ENST00000469042.5:ENST00000510100.1:ENST00000477604.5:ENST00000507705.5:ENST00000487024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	11	2	2.76656	3.1955999999999998	3.62464	0.0113141	1.11057e-4	0.181488	0.00448562
chr8	54064561	54064659	5171107	0	-	0.408163	(0.392,0.424]	chr8	463677	8	INTRON	INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	11	2	2.84278	3.195	3.54722	0.00949728	1.52245e-4	0.16275	0.0058275
chr10	35469532	35469632	5837164	0	+	0.56	(0.526,0.57]	chr10	524519	137	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.57946	3.19469	3.80992	0.0110174	1.14789e-4	0.179063	0.00467969
chr17	64900681	64900779	8987962	0	-	0.326531	(0.32,0.36]	chr17	866429	17	INTRON	INTRON	LRRC37A3	ENSG00000176809.11	ENST00000584306.6:ENST00000339474.9:ENST00000581368.5:ENST00000577487.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	12	2	2.63272	3.194595	3.75647	0.00503554	6.44559e-5	0.0976839	0.00284455
chr12	120469609	120469678	7300531	0	-	0.869565	(0.629,1]	chr12	673842	1	UTR5	UTR5:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	46	2	3.08542	3.19402	3.30262	1.02829e-6	3.61748e-8	7.21054e-5	3.35029e-6
chr17	60230689	60230788	8975163	0	-	0.444444	(0.424,0.459]	chr17	864599	41	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5:ENST00000590133.5:ENST00000589335.5	protein_coding	protein_coding	protein_coding	protein_coding	5	14	2	3.12644	3.1938	3.26116	8.43922e-4	2.23036e-4	0.0240064	0.00816414
chr5	14855014	14855114	3424271	0	-	0.54	(0.526,0.57]	chr5	314923	669	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	10	2	3.15803	3.19347	3.22891	0.00482649	0.00393565	0.0920354	0.0798064
chr8	60744095	60744195	4992704	0	+	0.56	(0.526,0.57]	chr8	447797	6	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000695849.1:ENST00000695848.1:ENST00000524602.5:ENST00000525508.1:ENST00000527825.1:ENST00000527900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	10	2	3.15803	3.19347	3.22891	0.00482649	0.00393565	0.0920354	0.0798064
chr5	644217	644298	3109320	0	+	0.358025	(0.32,0.36]	chr5	288023	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	12	2	2.98798	3.1934449999999996	3.39891	0.00108651	4.39493e-4	0.0301638	0.0145031
chr2	25246671	25246723	1399762	0	-	0.557692	(0.526,0.57]	chr2	145333	2	CDS	CDS:UTR3:EXON_MRNA	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380746.8:ENST00000380756.7:ENST00000683760.1:ENST00000683393.1:ENST00000402667.1:ENST00000474807.5:ENST00000484184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	3.1573	3.193105	3.22891	0.00393565	4.45312e-4	0.0798064	0.0146627
chr5	402464	402564	3108223	0	+	0.6	(0.57,0.629]	chr5	287807	254	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	3.12264	3.19253	3.26242	1.01567e-5	2.62875e-6	5.53203e-4	1.66335e-4
chr13	72980243	72980343	7394014	0	+	0.38	(0.36,0.392]	chr13	683096	61	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000615625.1:ENST00000489922.5:ENST00000469712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	13	2	3.17868	3.1911	3.20352	0.0019364	1.02243e-4	0.0476694	0.00424251
chr1	112956881	112956974	261360	0	+	0.612903	(0.57,0.629]	chr1	27045	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000428411.6:ENST00000416193.5:ENST00000664314.1:ENST00000435800.6:ENST00000662044.1:ENST00000654334.1:ENST00000420168.2:ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	13	49	2	3.02072	3.190905	3.36109	5.97006e-9	3.25989e-9	6.29552e-7	3.5741e-7
chr12	20510679	20510779	6843471	0	+	0.39	(0.36,0.392]	chr12	625044	1401	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	13	2	2.29451	3.19048	4.08645	0.00292151	1.23682e-4	0.0671315	0.0049353
chr1	171575060	171575128	341001	0	+	0.485294	(0.459,0.49]	chr1	38136	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	15	43	2	3.18022	3.190365	3.20051	8.67511e-9	2.97132e-9	8.97975e-7	3.26885e-7
chr10	100529851	100529925	6236568	0	-	0.594595	(0.57,0.629]	chr10	557967	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB8	ENSG00000166136.16	ENST00000299166.9:ENST00000370322.5:ENST00000370320.4:ENST00000528425.5:ENST00000466088.5:ENST00000529437.1:ENST00000531418.5:ENST00000531189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	53	2	2.93535	3.18744	3.43953	3.8051e-8	6.25396e-11	3.51532e-6	8.67812e-9
chr1	243208717	243208817	906050	0	-	0.46	(0.459,0.49]	chr1	100534	75	INTRON	INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522191.5:ENST00000523424.5	protein_coding	protein_coding	protein_coding	protein_coding	9	24	2	2.60541	3.18742	3.76943	4.25044e-5	4.60418e-6	0.00199812	2.71998e-4
chrX	53413058	53413138	10345630	0	-	0.525	(0.49,0.526]	chrX	1027424	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	148	2	3.05404	3.186965	3.31989	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	6846661	6846761	12510	0	+	0.35	(0.32,0.36]	chr1	1865	211	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	9	2	2.97267	3.18579	3.39891	0.00701727	0.00108651	0.122029	0.0301638
chr4	173156100	173156200	3089928	0	-	0.36	(0.32,0.36]	chr4	286015	102	INTRON	INTRON	GALNT7-DT	ENSG00000245213.7	ENST00000663396.1:ENST00000500914.6:ENST00000661589.1:ENST00000499322.7:ENST00000659700.1:ENST00000666327.1	lncRNA	lncRNA	lncRNA	lncRNA	4	9	2	2.97267	3.18579	3.39891	0.00701727	0.00108651	0.122029	0.0301638
chr5	64725657	64725754	3489986	0	-	0.360825	(0.36,0.392]	chr5	319671	7	INTRON	INTRON	SREK1IP1	ENSG00000153006.16	ENST00000513458.9:ENST00000651194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	9	2	2.85081	3.185745	3.52068	0.00352888	0.00324516	0.0751127	0.0730386
chr9	124609807	124609907	5733024	0	-	0.39	(0.36,0.392]	chr9	513813	141	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	11	20	2	2.54035	3.18453	3.82871	1.87242e-4	1.70072e-6	0.00697985	1.11415e-4
chr16	81040708	81040801	8449114	0	+	0.451613	(0.424,0.459]	chr16	790939	3	UTR5	UTR5:EXON_MRNA:INTRON	ATMIN	ENSG00000166454.10	ENST00000299575.5:ENST00000562969.1:ENST00000539819.5:ENST00000564241.5:ENST00000565237.1:ENST00000566488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	11	2	2.8224	3.1843500000000002	3.5463	0.00212808	0.00153741	0.0533203	0.0389999
chr4	163819229	163819329	3072428	0	-	0.37	(0.36,0.392]	chr4	284865	1180	INTRON	INTRON	MARCHF1	ENSG00000145416.14	ENST00000274056.11:ENST00000503008.5:ENST00000514618.6:ENST00000507270.5:ENST00000510696.1:ENST00000503104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	15	2	3.02295	3.184235	3.34552	0.00109343	2.31596e-5	0.029258	0.00117436
chr13	114301828	114301926	7456756	0	+	0.581633	(0.57,0.629]	chr13	686997	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000480362.5:ENST00000475218.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	161	2	3.01644	3.184205	3.35197	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	71378816	71378915	1070751	0	+	0.444444	(0.424,0.459]	chr2	113773	26	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9	protein_coding	protein_coding	protein_coding	protein_coding	4	11	2	2.56804	3.18409	3.80014	0.00769936	3.54639e-4	0.135524	0.0120332
chr11	20483327	20483427	6346672	0	+	0.39	(0.36,0.392]	chr11	569206	184	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	9	2	2.76763	3.183775	3.59992	0.00445622	0.00266188	0.0875511	0.0631592
chr15	41767673	41767771	7953264	0	+	0.387755	(0.36,0.392]	chr15	735113	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MGA	ENSG00000174197.18	ENST00000566586.6:ENST00000219905.13:ENST00000568255.2:ENST00000682598.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	9	2	2.76763	3.183775	3.59992	0.00445622	0.00266188	0.0875511	0.0631592
chr1	92374239	92374338	233057	0	+	0.434343	(0.424,0.459]	chr1	23273	280	INTRON	INTRON	RPAP2	ENSG00000122484.9	ENST00000610020.2:ENST00000477322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	16	2	2.38609	3.1833549999999997	3.98062	0.00610401	2.41657e-6	0.111745	1.5318e-4
chr12	26009746	26009846	6848479	0	+	0.43	(0.424,0.459]	chr12	625655	143	INTRON	INTRON	RASSF8	ENSG00000123094.16	ENST00000689434.1:ENST00000688511.1:ENST00000689635.1:ENST00000381352.7:ENST00000405154.6:ENST00000535907.5:ENST00000538081.5:ENST00000615708.4:ENST00000542865.5:ENST00000541490.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	11	2	2.46913	3.1819499999999996	3.89477	0.0100222	2.5121e-4	0.164581	0.00902798
chr9	137797048	137797145	5531886	0	+	0.43299	(0.424,0.459]	chr9	498335	15	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000493484.5:ENST00000482340.5:ENST00000486164.5:ENST00000637277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	11	2	2.72297	3.18169	3.64041	0.00293552	0.00115507	0.0672936	0.0316008
chr1	173761652	173761751	349012	0	+	0.363636	(0.36,0.392]	chr1	38619	41	INTRON	INTRON	KLHL20	ENSG00000076321.11	ENST00000209884.5	protein_coding	protein_coding	protein_coding	protein_coding	8	18	2	2.85081	3.18138	3.51195	0.00352888	2.72313e-7	0.0751127	2.13145e-5
chrX	53403834	53403893	10345525	0	-	0.440678	(0.424,0.459]	chrX	1027386	2	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	66	145	2	2.932	3.1799850000000003	3.42797	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	27534134	27534234	6853711	0	+	0.49	(0.459,0.49]	chr12	626063	94	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000541633.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	3	9	2	2.47473	3.1786000000000003	3.88247	0.0104144	0.00637649	0.170122	0.114061
chr1	174437644	174437744	352820	0	+	0.42	(0.392,0.424]	chr1	38884	431	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	52	102	2	3.13885	3.177085	3.21532	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	30651189	30651280	8369839	0	+	0.604396	(0.57,0.629]	chr16	781328	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000563399.5:ENST00000568754.5:ENST00000569864.5:ENST00000563211.5:ENST00000564946.5:ENST00000565410.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	2.74492	3.175475	3.60603	7.5309e-4	2.87788e-4	0.0225125	0.0101506
chr14	103560396	103560492	7918128	0	-	0.427083	(0.424,0.459]	chr14	730157	6	CDS	CDS:EXON_MRNA	BAG5	ENSG00000166170.12	ENST00000445922.2:ENST00000299204.6:ENST00000337322.5	protein_coding	protein_coding	protein_coding	protein_coding	25	57	2	3.04711	3.175055	3.303	8.68312e-11	1e-12	1.17995e-8	1.73382e-10
chr4	150838349	150838448	3055018	0	-	0.474747	(0.459,0.49]	chr4	283620	60	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	22	2	3.0419	3.17493	3.30796	1.95784e-4	2.57785e-6	0.00725539	1.6148e-4
chr3	15747373	15747472	2187441	0	-	0.373737	(0.36,0.392]	chr3	213943	98	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000476472.5:ENST00000460278.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	20	2	2.98946	3.174595	3.35973	8.45696e-5	2.99856e-6	0.00359824	1.84954e-4
chr1	178838943	178839043	363723	0	+	0.37	(0.36,0.392]	chr1	39289	50	INTRON	INTRON	RALGPS2	ENSG00000116191.19	ENST00000495034.5:ENST00000367634.7:ENST00000367635.8:ENST00000324778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	10	2	2.51716	3.174145	3.83113	0.00691076	6.41601e-4	0.12284	0.0193935
chr11	10281622	10281722	6562315	0	-	0.39	(0.36,0.392]	chr11	596549	873	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	10	2	2.51716	3.174145	3.83113	0.00691076	6.41601e-4	0.12284	0.0193935
chr4	26695389	26695489	2592143	0	+	0.47	(0.459,0.49]	chr4	248736	66	INTRON	INTRON	TBC1D19	ENSG00000109680.11	ENST00000264866.9:ENST00000502873.5:ENST00000511789.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	15	2	2.13538	3.1738	4.21222	0.0128493	9.25181e-6	0.195714	5.14007e-4
chr2	36355777	36355862	989355	0	+	0.776471	(0.629,1]	chr2	107789	1	UTR5	UTR5:EXON_MRNA	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.904	3.17379	4.44358	0.0125401	2.42913e-8	0.199657	2.30117e-6
chr2	241057809	241057908	1361611	0	+	0.313131	[0,0.32]	chr2	140545	41	INTRON	INTRON	SNED1	ENSG00000162804.14	ENST00000310397.13:ENST00000405547.7:ENST00000401884.5	protein_coding	protein_coding	protein_coding	protein_coding	5	9	2	2.59553	3.17296	3.75039	0.00557929	0.00182075	0.105396	0.0469284
chr7	2242349	2242441	4285009	0	+	0.73913	(0.629,1]	chr7	388415	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUDT1	ENSG00000106268.16	ENST00000356714.6:ENST00000397046.5:ENST00000397048.5:ENST00000454650.1	protein_coding	protein_coding	protein_coding	protein_coding	10	48	2	2.65898	3.17089	3.6828	4.33119e-7	9.28644e-8	3.25139e-5	7.95177e-6
chr3	47315655	47315755	1862791	0	+	0.41	(0.392,0.424]	chr3	188675	176	INTRON	INTRON	KLHL18	ENSG00000114648.12	ENST00000433449.5:ENST00000232766.6:ENST00000461084.5:ENST00000437353.5:ENST00000442272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	11	2	2.30301	3.17002	4.03703	0.0122095	1.48653e-4	0.186377	0.00578975
chr8	120349746	120349845	5078567	0	+	0.414141	(0.392,0.424]	chr8	454381	38	INTRON	INTRON	COL14A1	ENSG00000187955.13	ENST00000297848.8:ENST00000309791.8:ENST00000440844.5	protein_coding	protein_coding	protein_coding	protein_coding	5	11	2	2.30301	3.17002	4.03703	0.0122095	1.48653e-4	0.186377	0.00578975
chr8	90001561	90001661	5020146	0	+	0.72	(0.629,1]	chr8	450512	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000520859.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	69	2	2.96758	3.16951	3.37144	2.84212e-10	2.17987e-10	3.59781e-8	2.80568e-8
chr11	12769333	12769433	6325851	0	+	0.46	(0.459,0.49]	chr11	567860	45	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.55849	3.169215	3.77994	0.00493064	2.14818e-4	0.0964485	0.00789628
chr9	137209205	137209305	5529385	0	+	0.58	(0.57,0.629]	chr9	497898	25	INTRON	INTRON	NDOR1	ENSG00000188566.15	ENST00000613750.1:ENST00000371521.8:ENST00000612145.1:ENST00000684003.1:ENST00000427047.6:ENST00000458322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	39	2	2.78241	3.16742	3.55243	2.40946e-7	1.91123e-7	1.93468e-5	1.53946e-5
chr10	5696877	5696976	5778550	0	+	0.313131	[0,0.32]	chr10	520597	36	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	38	2	2.95581	3.1668149999999997	3.37782	1.70715e-7	2.75555e-11	1.40752e-5	3.99597e-9
chr3	56737184	56737269	2291532	0	-	0.517647	(0.49,0.526]	chr3	224310	1	CDS	CDS:UTR3:EXON_MRNA	ARHGEF3	ENSG00000163947.12	ENST00000338458.8:ENST00000296315.8:ENST00000413728.6:ENST00000465659.5:ENST00000496106.5:ENST00000497267.5:ENST00000495373.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	45	2	2.69435	3.162645	3.63094	1.00165e-7	4.71003e-10	8.42146e-6	5.80703e-8
chr10	5696778	5696877	5778549	0	+	0.252525	[0,0.32]	chr10	520597	35	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	15	2	2.96183	3.16213	3.36243	0.00121149	2.60792e-5	0.0321344	0.00128181
chr16	83939552	83939651	8467349	0	+	0.535354	(0.526,0.57]	chr16	791614	55	INTRON	INTRON	MLYCD:OSGIN1	ENSG00000103150.7:ENSG00000140961.14	ENST00000561562.5:ENST00000566309.2:ENST00000563312.5:ENST00000566667.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	42	2	3.0835	3.159945	3.23639	1.56888e-7	2.31998e-9	1.29603e-5	2.59939e-7
chr4	6880786	6880866	2565951	0	+	0.4625	(0.459,0.49]	chr4	246567	1	CDS	CDS:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	20	51	2	2.66781	3.15805	3.64829	6.67157e-9	1.97639e-11	7.00436e-7	2.91345e-9
chr1	228404830	228404927	878182	0	-	0.268041	[0,0.32]	chr1	97739	28	UTR5	UTR5:EXON_MRNA:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.69624	3.157355	3.61847	0.0100202	2.40709e-4	0.170122	0.00878409
chr1	167276720	167276820	328106	0	+	0.32	[0,0.32]	chr1	36847	18	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	10	2	2.61711	3.1572899999999997	3.69747	0.0119953	1.81106e-4	0.184357	0.0069054
chr17	43276155	43276255	8938223	0	-	0.48	(0.459,0.49]	chr17	859071	460	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	3.07128	3.156805	3.24233	3.09793e-5	3.74549e-7	0.0014948	2.86917e-5
chr9	133417844	133417928	5759797	0	-	0.821429	(0.629,1]	chr9	517293	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	REXO4	ENSG00000148300.12	ENST00000371935.6:ENST00000371942.8:ENST00000454825.1:ENST00000494045.5:ENST00000478037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.91389	3.156175	3.39846	5.39652e-4	5.22361e-4	0.0171646	0.0167376
chr15	28322126	28322179	8112747	0	-	0.811321	(0.629,1]	chr15	750662	2	UTR5	UTR5:EXON_MRNA	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	17	2	2.1836700000000002	3.15605	4.12843	0.00283208	0.00233396	0.0662445	0.0563219
chr3	51310231	51310326	1877938	0	+	0.463158	(0.459,0.49]	chr3	190577	1	CDS	CDS:EXON_MRNA	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.66682	3.155525	3.64423	0.00873764	6.20842e-4	0.144342	0.0191195
chr6	71359783	71359883	4100014	0	-	0.42	(0.392,0.424]	chr6	373557	108	INTRON	INTRON	LINC00472	ENSG00000233237.8	ENST00000651778.1:ENST00000413945.6:ENST00000436803.6:ENST00000652655.1:ENST00000650942.1	lncRNA	lncRNA	lncRNA	lncRNA	21	42	2	3.07233	3.1555	3.23867	2.42046e-9	9.77151e-10	2.7126e-7	1.1522e-7
chr12	297040	297120	7062715	0	-	0.4625	(0.459,0.49]	chr12	648152	1	CDS	CDS:EXON_MRNA	KDM5A	ENSG00000073614.13	ENST00000399788.7	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.91928	3.155285	3.39129	0.00264065	0.00244536	0.063308	0.0587626
chr3	149969139	149969228	2471937	0	-	0.483146	(0.459,0.49]	chr3	237094	2	INTRON	INTRON	PFN2	ENSG00000070087.15	ENST00000649949.1:ENST00000452853.6:ENST00000239940.12:ENST00000423691.2:ENST00000481767.5:ENST00000460404.5:ENST00000468323.5:ENST00000494827.5:ENST00000490975.1:ENST00000497148.5:ENST00000498169.1:ENST00000475518.5:ENST00000481275.5:ENST00000498307.5:ENST00000489155.1:ENST00000461930.1:ENST00000461868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	18	2	2.7486	3.1549750000000003	3.56135	0.00700666	1.37546e-6	0.12393	9.34366e-5
chr7	73522203	73522293	4730565	0	-	0.6	(0.57,0.629]	chr7	424215	4	UTR5	UTR5:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.39432	3.154925	3.91553	0.00651627	0.00573141	0.114061	0.106459
chr1	93226332	93226390	234573	0	+	0.362069	(0.36,0.392]	chr1	23533	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000692873.1:ENST00000455267.1:ENST00000421014.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	28	49	2	2.91851	3.154735	3.39096	1.36231e-10	2.11471e-11	1.78201e-8	3.09898e-9
chr17	20205607	20205701	8674580	0	+	0.382979	(0.36,0.392]	chr17	820857	14	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6:ENST00000681564.1:ENST00000681116.1:ENST00000681875.1:ENST00000680604.1:ENST00000680572.1:ENST00000679058.1:ENST00000395529.7:ENST00000261503.9:ENST00000581973.7:ENST00000580934.2:ENST00000680740.1:ENST00000579688.2:ENST00000395530.6:ENST00000581399.6:ENST00000679819.1:ENST00000681545.1:ENST00000680373.1:ENST00000679801.1:ENST00000681731.1:ENST00000679740.1:ENST00000395522.6:ENST00000395525.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	34	2	2.92613	3.1545199999999998	3.38291	4.75931e-8	2.56495e-8	4.26481e-6	2.42368e-6
chr1	20878323	20878423	534745	0	-	0.37	(0.36,0.392]	chr1	58945	127	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	11	2	3.02295	3.15428	3.28561	0.0015215	0.00109343	0.0397018	0.029258
chr8	115445328	115445428	5250752	0	-	0.38	(0.36,0.392]	chr8	469475	265	INTRON	INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000518018.1	protein_coding	protein_coding	protein_coding	protein_coding	5	11	2	3.02295	3.15428	3.28561	0.0015215	0.00109343	0.0397018	0.029258
chr17	61261958	61262058	8765873	0	+	0.36	(0.32,0.36]	chr17	834189	162	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1:ENST00000585812.5:ENST00000587294.5:ENST00000592702.5:ENST00000588569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	23	2	3.12977	3.1536	3.17743	7.35725e-6	1.83832e-6	4.23318e-4	1.20283e-4
chr9	20660423	20660522	5359368	0	+	0.353535	(0.32,0.36]	chr9	478343	12	INTRON	INTRON	FOCAD	ENSG00000188352.13	ENST00000380249.5	protein_coding	protein_coding	protein_coding	protein_coding	9	15	2	2.19467	3.1533299999999995	4.11199	0.00665607	2.44546e-6	0.118959	1.55199e-4
chr1	31911760	31911826	561052	0	-	0.424242	(0.392,0.424]	chr1	62877	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6:ENST00000528253.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	12	2	2.97135	3.151075	3.3308	0.00130048	6.63878e-4	0.0347373	0.0199616
chr5	112368740	112368840	3568533	0	-	0.43	(0.424,0.459]	chr5	324420	609	INTRON	INTRON	EPB41L4A	ENSG00000129595.14	ENST00000261486.6:ENST00000512395.5:ENST00000305368.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	14	2	3.0068	3.149645	3.29249	0.00341471	5.87704e-5	0.0729529	0.00266966
chr11	66522850	66522930	6421201	0	+	0.425	(0.424,0.459]	chr11	578600	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BBS1	ENSG00000174483.20	ENST00000526760.5:ENST00000533644.5:ENST00000318312.12:ENST00000533557.5:ENST00000525809.5:ENST00000529955.5:ENST00000455748.6:ENST00000526035.5:ENST00000532908.5:ENST00000529766.5:ENST00000393994.4:ENST00000630659.2:ENST00000524458.5:ENST00000524884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	23	2	2.51665	3.14933	3.78201	0.00118296	2.26374e-8	0.0314755	2.17772e-6
chr2	23866952	23867047	1395340	0	-	0.431579	(0.424,0.459]	chr2	144601	17	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000366438.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	15	2	2.96654	3.1489700000000003	3.3314	0.00517898	3.06931e-5	0.0992178	0.00150487
chr19	43973541	43973640	9356026	0	+	0.424242	(0.392,0.424]	chr19	909825	51	INTRON	INTRON	ZNF155	ENSG00000204920.11	ENST00000590411.5	protein_coding	protein_coding	protein_coding	protein_coding	10	22	2	2.54178	3.148925	3.75607	8.19729e-4	5.43226e-8	0.0238903	4.91801e-6
chr3	142376536	142376594	2458007	0	-	0.431034	(0.424,0.459]	chr3	235932	2	CDS	CDS:EXON_MRNA	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	13	2	3.05681	3.147425	3.23804	0.00649971	9.66812e-5	0.114061	0.00402002
chr9	123184134	123184222	5725036	0	-	0.375	(0.36,0.392]	chr9	513495	1	UTR5	UTR5:EXON_MRNA	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6:ENST00000479114.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	40	2	2.5973	3.1471600000000004	3.69702	8.57352e-6	1e-12	4.81682e-4	1.72912e-10
chr1	178413630	178413730	361789	0	+	0.38	(0.36,0.392]	chr1	39135	231	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000696605.1:ENST00000462775.5:ENST00000696606.1:ENST00000696607.1	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.77286	3.14677	3.52068	0.00324516	0.00178276	0.0730386	0.0462639
chr9	77407537	77407637	5408278	0	+	0.32	[0,0.32]	chr9	482969	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000484581.6:ENST00000376646.3:ENST00000467124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	11	2	2.85158	3.14634	3.4411	0.00137297	9.57415e-4	0.0360194	0.0269423
chr7	80678284	80678383	4452195	0	+	0.323232	(0.32,0.36]	chr7	400102	23	UTR3	UTR3:EXON_MRNA	CD36	ENSG00000135218.19	ENST00000447544.7:ENST00000464213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	18	2	2.79759	3.1453100000000003	3.49303	2.77506e-4	5.15679e-6	0.00987376	3.03741e-4
chr22	32477935	32478034	9935874	0	+	0.424242	(0.392,0.424]	chr22	987179	16	INTRON	INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	28	2	2.90922	3.143925	3.37863	8.87359e-7	7.03152e-7	6.24546e-5	5.08591e-5
chr3	11846401	11846501	2175532	0	-	0.63	(0.629,1]	chr3	212487	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TAMM41	ENSG00000144559.11	ENST00000273037.9:ENST00000455809.6:ENST00000457498.5:ENST00000444133.6:ENST00000411947.1:ENST00000417723.1:ENST00000494388.1:ENST00000630288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	493	2417	2	3.02239	3.142685	3.26298	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	10087198	10087264	1760982	0	+	0.333333	(0.32,0.36]	chr3	181106	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	7	2	2.97267	3.14199	3.31131	0.0111187	0.00701727	0.179068	0.122029
chr6	36503985	36504084	4048819	0	-	0.353535	(0.32,0.36]	chr6	369065	36	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	3	7	2	2.97267	3.14199	3.31131	0.0111187	0.00701727	0.179068	0.122029
chr17	50737186	50737286	8741829	0	+	0.3	[0,0.32]	chr17	832111	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5:ENST00000513025.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	8	2	2.92861	3.140185	3.35176	0.0102933	0.00282946	0.170122	0.0650221
chrX	107083956	107084055	10400601	0	-	0.383838	(0.36,0.392]	chrX	1032145	132	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	13	2	2.76763	3.1399850000000002	3.51234	0.00445622	3.96166e-5	0.0875511	0.00188516
chr13	48427531	48427631	7376572	0	+	0.53	(0.526,0.57]	chr13	681714	457	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	22	64	2	2.89436	3.1399299999999997	3.3855	6.25321e-11	1.63192e-12	8.69617e-9	2.73649e-10
chr16	3519902	3519969	8307609	0	+	0.41791	(0.392,0.424]	chr16	773737	1	CDS	CDS:UTR3:EXON_MRNA	CLUAP1	ENSG00000103351.13	ENST00000574369.5:ENST00000574592.5:ENST00000576634.6:ENST00000575134.1:ENST00000341633.9:ENST00000571025.5:ENST00000572600.5:ENST00000574551.1:ENST00000572632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	25	2	3.05808	3.139735	3.22139	6.91878e-6	1.18812e-6	4.01658e-4	8.13398e-5
chr20	41470422	41470522	9745562	0	-	0.49	(0.459,0.49]	chr20	965496	126	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000440697.5	protein_coding	protein_coding	protein_coding	protein_coding	16	44	2	2.80049	3.139735	3.47898	1.93375e-7	8.23835e-11	1.56578e-5	1.12141e-8
chrX	41110882	41110982	10114909	0	+	0.45	(0.424,0.459]	chrX	1008344	244	INTRON	INTRON	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	4	11	2	3.03857	3.138305	3.23804	0.00649971	5.63002e-4	0.114061	0.0178211
chr6	131063231	131063322	4199099	0	-	0.67033	(0.629,1]	chr6	381836	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	3.1166	3.138205	3.15981	0.00188809	1.41787e-4	0.0466341	0.00568047
chr15	28159206	28159306	8111033	0	-	0.44	(0.424,0.459]	chr15	750305	60	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	26	2	3.08995	3.13619	3.18243	8.61234e-6	8.18126e-7	4.83499e-4	5.77714e-5
chr6	43628488	43628588	4067207	0	-	0.49	(0.459,0.49]	chr6	371129	3	SS5_PROX	SS5_PROX:INTRON	GTPBP2	ENSG00000172432.19	ENST00000307126.10:ENST00000442748.5:ENST00000452781.1	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	2.48044	3.136165	3.79189	2.84436e-4	1.6066e-12	0.0100538	2.69826e-10
chr5	131373549	131373649	3315944	0	+	0.44	(0.424,0.459]	chr5	304092	136	INTRON	INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	2.96319	3.1360900000000003	3.30899	1.11911e-5	6.38655e-7	6.01197e-4	4.64531e-5
chr16	84709620	84709720	8468383	0	+	0.51	(0.49,0.526]	chr16	791792	4	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000569511.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	18	2	2.54983	3.13521	3.72059	2.9786e-4	2.73826e-4	0.0104885	0.00975361
chr5	123608953	123609053	3304584	0	+	0.43	(0.424,0.459]	chr5	303390	32	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000512718.7:ENST00000511130.6:ENST00000521364.5:ENST00000510842.6:ENST00000360683.6:ENST00000361991.6:ENST00000515322.2	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	2.70259	3.13467	3.56675	0.00129645	7.38392e-5	0.0346786	0.0032006
chr12	45770686	45770786	6891410	0	+	0.5	(0.49,0.526]	chr12	628366	148	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	21	2	2.88418	3.13422	3.38426	4.05006e-4	7.26508e-6	0.0135138	4.19717e-4
chr14	103521625	103521721	7918031	0	-	0.760417	(0.629,1]	chr14	730144	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000553528.5:ENST00000553652.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1:ENST00000555659.5:ENST00000554705.5:ENST00000555770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	41	2	2.82692	3.133435	3.43995	6.49948e-6	2.67293e-7	3.75413e-4	2.07658e-5
chr20	53355958	53356058	9676442	0	+	0.4	(0.392,0.424]	chr20	955971	990	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10:ENST00000603338.2:ENST00000605656.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	25	2	3.03607	3.1333349999999998	3.2306	7.07788e-6	1.05897e-6	4.08189e-4	7.4144e-5
chr3	149924322	149924421	2041348	0	+	0.414141	(0.392,0.424]	chr3	204111	27	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000361785.10:ENST00000482083.7:ENST00000468289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	18	2	2.85333	3.133215	3.4131	7.37124e-4	4.16676e-6	0.0223835	2.48371e-4
chr3	196353411	196353511	2530490	0	-	0.31	[0,0.32]	chr3	242580	59	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	12	20	2	2.96183	3.13293	3.30403	2.60792e-5	8.41122e-6	0.00128181	4.73993e-4
chr19	10391650	10391706	9434196	0	-	0.589286	(0.57,0.629]	chr19	925165	1	CDS	CDS:EXON_MRNA	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.84467	3.13255	3.42043	0.00224807	9.02612e-4	0.0552099	0.0258498
chr7	55064840	55064940	4390337	0	+	0.45	(0.424,0.459]	chr7	395429	209	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	38	2	2.7704	3.13206	3.49372	4.00385e-7	6.86133e-10	3.03898e-5	8.23717e-8
chr1	156789469	156789568	310367	0	+	0.424242	(0.392,0.424]	chr1	34427	19	INTRON	INTRON	PRCC	ENSG00000143294.15	ENST00000491853.5:ENST00000271526.9:ENST00000526188.5:ENST00000454659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	12	2	2.71627	3.131745	3.54722	0.00513884	1.52245e-4	0.0992178	0.0058275
chr2	239134843	239134943	1730461	0	-	0.41	(0.392,0.424]	chr2	177914	2	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000461113.5:ENST00000445704.1:ENST00000553145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	12	2	2.71627	3.131745	3.54722	0.00513884	1.52245e-4	0.0992178	0.0058275
chr5	59001429	59001528	3472237	0	-	0.383838	(0.36,0.392]	chr5	319164	16	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000358923.10:ENST00000503258.5:ENST00000405755.6:ENST00000515011.5:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	21	2	2.68866	3.1312550000000003	3.57385	0.00234853	1.98269e-8	0.0566232	1.94041e-6
chr11	35704297	35704396	6372054	0	+	0.454545	(0.424,0.459]	chr11	571037	186	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	2.78449	3.130515	3.47654	2.25298e-4	8.06573e-7	0.00827964	5.78931e-5
chr17	17181069	17181169	8663059	0	+	0.47	(0.459,0.49]	chr17	819253	4	SS5_PROX	SS5_PROX:INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000395811.9:ENST00000341712.8:ENST00000584067.5:ENST00000579832.1:ENST00000313485.10:ENST00000414263.5:ENST00000429184.7:ENST00000578209.5:ENST00000579361.1	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	2.98552	3.13029	3.27506	5.02154e-5	3.71826e-5	0.00230209	0.00178235
chr11	20486524	20486624	6346704	0	+	0.46	(0.459,0.49]	chr11	569206	216	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	16	2	3.12648	3.130275	3.13407	7.72738e-4	1.31261e-4	0.0225969	0.00527452
chr14	73107825	73107899	7697047	0	+	0.351351	(0.32,0.36]	chr14	707110	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	75	2	2.87915	3.13024	3.38133	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	37832274	37832368	6115150	0	-	0.37234	(0.36,0.392]	chr10	547729	7	CDS	CDS:EXON_MRNA:INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000494133.1:ENST00000374648.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	26	2	3.08674	3.129835	3.17293	1.76136e-6	9.64929e-7	1.16856e-4	6.784e-5
chr14	49633677	49633775	7817331	0	-	0.632653	(0.629,1]	chr14	719539	5	CDS	CDS:EXON_MRNA	DNAAF2	ENSG00000165506.15	ENST00000298292.13:ENST00000406043.3	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.53295	3.1283250000000002	3.7237	0.00110765	4.75614e-5	0.0305163	0.00218277
chr12	64630733	64630833	6938180	0	+	0.49	(0.459,0.49]	chr12	635121	192	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	10	2	2.43515	3.126135	3.81712	0.0120499	0.00338763	0.184357	0.0728314
chr17	13863479	13863579	8877009	0	-	0.36	(0.32,0.36]	chr17	849473	701	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000577798.6:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	4	8	2	2.65381	3.12592	3.59803	0.0110381	0.00267453	0.179068	0.0637459
chr2	63550486	63550586	1465791	0	-	0.34	(0.32,0.36]	chr2	152123	572	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000418148.5:ENST00000490935.5:ENST00000431065.1:ENST00000467687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	8	2	2.65381	3.12592	3.59803	0.0110381	0.00267453	0.179068	0.0637459
chrX	81213914	81214014	10170322	0	+	0.36	(0.32,0.36]	chrX	1013464	108	INTRON	INTRON	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	8	2	2.65381	3.12592	3.59803	0.0110381	0.00267453	0.179068	0.0637459
chr15	82540425	82540428	8259760	0	-	0.333333	(0.32,0.36]	chr15	766791	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS17	ENSG00000182774.13	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000560639.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	9	17	2	2.61867	3.123585	3.6285	0.00233389	1.10958e-6	0.0565058	7.61206e-5
chr16	18377487	18377572	8522744	0	-	0.576471	(0.57,0.629]	chr16	800088	1	EXON_PSEUDO	EXON_PSEUDO	PKD1P5	ENSG00000254681.6	ENST00000532415.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	2	11	2	2.95732	3.1234	3.28948	0.00848479	0.00212278	0.140721	0.0532704
chr12	108810675	108810759	7274196	0	-	0.571429	(0.57,0.629]	chr12	670193	6	INTRON	INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000326470.9:ENST00000547862.6:ENST00000548522.5:ENST00000547381.1:ENST00000546697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	3.03884	3.12311	3.20738	0.00676458	0.00279229	0.1204	0.064521
chr1	93876457	93876552	698716	0	-	0.368421	(0.36,0.392]	chr1	75537	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNTTIP2	ENSG00000067334.14	ENST00000436063.7:ENST00000359208.6:ENST00000460191.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	16	2	2.41743	3.1230700000000002	3.82871	0.00444188	1.70072e-6	0.0875511	1.11415e-4
chr1	32819021	32819114	100548	0	+	0.430108	(0.424,0.459]	chr1	11332	3	INTRON	INTRON	S100PBP	ENSG00000116497.18	ENST00000530710.5:ENST00000373476.5:ENST00000529027.5:ENST00000531123.5:ENST00000356689.7:ENST00000373475.10:ENST00000526230.1:ENST00000531256.1:ENST00000482212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	9	2	3.0068	3.12242	3.23804	0.00649971	0.00341471	0.114061	0.0729529
chr11	118384634	118384684	6507293	0	+	0.44	(0.424,0.459]	chr11	588794	1	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	3.0068	3.12242	3.23804	0.00649971	0.00341471	0.114061	0.0729529
chr11	130877024	130877123	6781568	0	-	0.444444	(0.424,0.459]	chr11	619120	109	UTR3	UTR3:EXON_MRNA	SNX19	ENSG00000120451.11	ENST00000265909.9	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	3.0068	3.12242	3.23804	0.00649971	0.00341471	0.114061	0.0729529
chrX	63379684	63379784	10355702	0	-	0.43	(0.424,0.459]	chrX	1028584	285	INTRON	INTRON	LINC01278	ENSG00000235437.9	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5	lncRNA	lncRNA	lncRNA	lncRNA	3	9	2	3.0068	3.12242	3.23804	0.00649971	0.00341471	0.114061	0.0729529
chr15	65010069	65010168	8214976	0	-	0.494949	(0.49,0.526]	chr15	761905	35	INTRON	INTRON	MTFMT	ENSG00000103707.10	ENST00000220058.9:ENST00000558460.5:ENST00000560717.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	24	2	2.54311	3.1218399999999997	3.70057	0.00102077	1.7655e-7	0.0276375	1.4303e-5
chr15	25067788	25067884	7927928	0	+	0.4375	(0.424,0.459]	chr15	731706	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000551077.2:ENST00000658769.1:ENST00000667925.1:ENST00000653407.1	lncRNA	lncRNA	lncRNA	lncRNA	8	20	2	2.32897	3.1216150000000003	3.91426	0.00372414	1.12148e-7	0.0811072	9.48939e-6
chr4	1956119	1956188	2545485	0	+	0.623188	(0.57,0.629]	chr4	244656	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	158	2	3.11992	3.120805	3.12169	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	5184776	5184875	8853890	0	-	0.40404	(0.392,0.424]	chr17	846344	1	INTRON	INTRON	ZNF594	ENSG00000180626.10	ENST00000575779.2:ENST00000576772.1	protein_coding	protein_coding	protein_coding	protein_coding	3	8	2	2.84278	3.12037	3.39796	0.00949728	0.00439831	0.16275	0.0875511
chr3	129867100	129867198	2435396	0	-	0.285714	[0,0.32]	chr3	233502	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000512902.5:ENST00000508869.5:ENST00000503256.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	12	2	2.32511	3.1201	3.91509	0.00978561	3.31414e-5	0.160953	0.00159339
chr1	245089430	245089530	487097	0	+	0.52	(0.49,0.526]	chr1	51401	17	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000487845.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	37	2	2.99203	3.119905	3.24778	1.66279e-7	1.42103e-7	1.36401e-5	1.18109e-5
chr19	44177079	44177178	9357584	0	+	0.494949	(0.49,0.526]	chr19	910137	17	CDS	CDS:UTR3:EXON_MRNA	ZNF226	ENSG00000167380.17	ENST00000337433.10:ENST00000588883.5:ENST00000590089.5:ENST00000454662.6	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	2.81712	3.11949	3.42186	1.17708e-6	1.79978e-8	8.07137e-5	1.76678e-6
chr1	234403040	234403138	888775	0	-	0.397959	(0.392,0.424]	chr1	98911	14	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000483404.5:ENST00000462259.5:ENST00000468077.5:ENST00000481183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	8	2	2.76656	3.11921	3.47186	0.0113141	0.00366403	0.181488	0.0766409
chr17	9844313	9844413	8646671	0	+	0.53	(0.526,0.57]	chr17	818118	13	INTRON	INTRON	GLP2R	ENSG00000065325.13	ENST00000574745.5:ENST00000458005.2:ENST00000262441.10:ENST00000304773.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	12	2	2.75687	3.11885	3.48083	0.00442955	0.00110295	0.0875511	0.0304129
chr7	39999345	39999422	4373361	0	+	0.402597	(0.392,0.424]	chr7	394135	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000647518.1:ENST00000642660.1:ENST00000646437.1:ENST00000484589.2:ENST00000643915.1:ENST00000647453.1:ENST00000642213.1:ENST00000645470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	34	2	2.70362	3.117975	3.53233	6.09958e-7	7.26124e-9	4.42565e-5	7.53453e-7
chr1	1310633	1310688	1848	0	+	0.509091	(0.49,0.526]	chr1	485	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PUSL1	ENSG00000169972.12	ENST00000379031.10:ENST00000470520.5:ENST00000467712.1:ENST00000493657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	12	2	2.51463	3.11761	3.72059	0.0130492	2.73826e-4	0.198111	0.00975361
chr5	72195441	72195539	3210390	0	+	0.408163	(0.392,0.424]	chr5	296335	17	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	8	17	2	2.93676	3.1172050000000002	3.29765	1.09179e-4	1.04913e-4	0.00442392	0.00432856
chr1	20971442	20971539	535691	0	-	0.350515	(0.32,0.36]	chr1	59013	15	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	45	2	3.04253	3.11715	3.19177	1.4159e-9	3.3733e-11	1.63851e-7	4.84162e-9
chr6	130956287	130956385	4198021	0	-	0.530612	(0.526,0.57]	chr6	381796	4	CDS	CDS:EXON_MRNA:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000639623.1:ENST00000530148.5:ENST00000528179.5:ENST00000526333.1:ENST00000529709.1:ENST00000532499.1:ENST00000526983.1:ENST00000531356.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	66	2	2.61018	3.117075	3.62397	9.59376e-9	1e-12	9.74486e-7	1.72912e-10
chr3	172380965	172381029	2080722	0	+	0.390625	(0.36,0.392]	chr3	206209	1	CDS	CDS:EXON_MRNA	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding	6	12	2	2.77286	3.115855	3.45885	0.00178276	4.24507e-4	0.0462639	0.0140677
chr4	102730696	102730796	2977610	0	-	0.39	(0.36,0.392]	chr4	279061	22	INTRON	INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000642252.1:ENST00000645348.1:ENST00000505239.1:ENST00000644965.1:ENST00000511813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	12	2	2.68866	3.114985	3.54131	0.00234853	3.17078e-4	0.0566232	0.0111061
chr12	56746925	56746978	7179170	0	-	0.415094	(0.392,0.424]	chr12	662543	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5:ENST00000552408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	26	2	2.66513	3.11486	3.56459	3.3457e-5	9.2705e-8	0.00159406	7.94023e-6
chr3	158668795	158668895	2477918	0	-	0.41	(0.392,0.424]	chr3	237636	4	SS5_PROX	SS5_PROX:INTRON	LXN	ENSG00000079257.8	ENST00000482640.5:ENST00000264265.4	protein_coding	protein_coding	protein_coding	protein_coding	13	26	2	2.66513	3.11486	3.56459	3.3457e-5	9.2705e-8	0.00159406	7.94023e-6
chr11	94850113	94850186	6470287	0	+	0.424658	(0.424,0.459]	chr11	584808	1	CDS	CDS:EXON_MRNA	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	83	162	2	2.55987	3.114615	3.66936	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	31671688	31671783	9855126	0	-	0.505263	(0.49,0.526]	chr21	977985	3	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3	protein_coding	protein_coding	protein_coding	protein_coding	28	82	2	3.09966	3.114485	3.12931	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	28277819	28277919	6357566	0	+	0.41	(0.392,0.424]	chr11	569663	663	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	10	2	3.07609	3.1144800000000004	3.15287	0.00280132	0.00224427	0.0645347	0.0552099
chr17	4032191	4032258	8848789	0	-	0.462687	(0.459,0.49]	chr17	845304	2	CDS	CDS:UTR3:EXON_MRNA	ZZEF1	ENSG00000074755.15	ENST00000381638.7:ENST00000571436.5:ENST00000573183.1:ENST00000573606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	38	2	2.97095	3.11372	3.25649	1.05785e-7	3.12004e-8	8.97695e-6	2.92502e-6
chr7	158932660	158932757	4600710	0	+	0.546392	(0.526,0.57]	chr7	414325	18	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	20	2	2.6815	3.11369	3.54588	3.72283e-4	2.75366e-5	0.0125803	0.00135076
chr2	109423828	109423928	1119879	0	+	0.62	(0.57,0.629]	chr2	119829	38	INTRON	INTRON	SH3RF3	ENSG00000172985.11	ENST00000309415.8	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.312	3.113645	3.91529	0.00268566	2.43299e-7	0.063945	1.91066e-5
chr11	61306607	61306705	6611659	0	-	0.489796	(0.459,0.49]	chr11	602892	22	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	30	2	2.81305	3.113115	3.41318	2.76906e-6	7.25881e-7	1.74547e-4	5.19414e-5
chr17	31310204	31310304	8696740	0	+	0.3	[0,0.32]	chr17	823478	102	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	17	2	3.07639	3.11305	3.14971	2.32754e-4	1.93705e-5	0.00843063	9.81584e-4
chr1	90939349	90939447	685059	0	-	0.346939	(0.32,0.36]	chr1	74539	12	CDS	CDS:EXON_MRNA:INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	39	2	2.71526	3.112935	3.51061	1.90889e-7	3.51342e-11	1.56262e-5	5.01144e-9
chr5	72196032	72196130	3210396	0	+	0.530612	(0.526,0.57]	chr5	296335	23	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	2.54469	3.11249	3.68029	9.37762e-5	7.86103e-6	0.00394438	4.5317e-4
chrX	53399588	53399659	10345478	0	-	0.352113	(0.32,0.36]	chrX	1027376	1	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	91	144	2	2.63405	3.112265	3.59048	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	38810885	38810985	7140073	0	-	0.44	(0.424,0.459]	chr12	655703	342	INTRON	INTRON	CPNE8	ENSG00000139117.14	ENST00000331366.10:ENST00000360449.3:ENST00000550863.1	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	3.05681	3.110045	3.16328	0.0011776	9.66812e-5	0.0313499	0.00402002
chr1	214516989	214517089	856662	0	-	0.5	(0.49,0.526]	chr1	95354	517	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000486173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	2.60562	3.109855	3.61409	0.0102832	1.16311e-5	0.170122	6.41146e-4
chr19	5718807	5718906	9417967	0	-	0.474747	(0.459,0.49]	chr19	921858	8	INTRON	INTRON	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5:ENST00000587365.1:ENST00000586617.1:ENST00000590728.1:ENST00000590511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	3.08436	3.109215	3.13407	0.00939464	7.72738e-4	0.161654	0.0225969
chr12	56423645	56423707	7177473	0	-	0.629032	(0.629,1]	chr12	662044	2	CDS	CDS:EXON_MRNA	TIMELESS	ENSG00000111602.12	ENST00000553532.6:ENST00000229201.4:ENST00000557589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	2.88499	3.10907	3.33315	6.26713e-5	2.27928e-5	0.00277665	0.00115649
chr1	8446490	8446590	508063	0	-	0.43	(0.424,0.459]	chr1	54851	78	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	16	36	2	3.00138	3.1088050000000003	3.21623	3.70767e-7	5.75734e-9	2.81987e-5	6.10575e-7
chr19	48646094	48646187	9522632	0	-	0.612903	(0.57,0.629]	chr19	940355	6	UTR5	UTR5:EXON_MRNA	CA11	ENSG00000063180.9	ENST00000084798.9	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.49138	3.107545	3.72371	0.00295413	3.56034e-8	0.0676474	3.27617e-6
chr14	60128006	60128105	7638654	0	+	0.333333	(0.32,0.36]	chr14	703231	18	INTRON	INTRON	PCNX4	ENSG00000126773.13	ENST00000317623.8:ENST00000406854.6:ENST00000406949.5:ENST00000555740.5:ENST00000555929.1:ENST00000556360.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	42	2	2.90536	3.10662	3.30788	4.29248e-9	2.68015e-10	4.6313e-7	3.39946e-8
chr11	64778490	64778589	6623219	0	-	0.828283	(0.629,1]	chr11	605174	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000681407.1:ENST00000633899.1:ENST00000413951.5:ENST00000482693.1:ENST00000463343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	3.05121	3.1055099999999998	3.15981	0.00356029	0.00188809	0.0753972	0.0466341
chr8	144513304	144513392	5309606	0	-	0.704545	(0.629,1]	chr8	475142	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RECQL4	ENSG00000160957.15	ENST00000621189.4:ENST00000617875.6:ENST00000534626.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	3.05121	3.1055099999999998	3.15981	0.00356029	0.00188809	0.0753972	0.0466341
chr17	19355073	19355172	8892033	0	-	0.343434	(0.32,0.36]	chr17	851365	68	INTRON	INTRON	B9D1	ENSG00000108641.20	ENST00000671102.1:ENST00000675510.1:ENST00000674596.1:ENST00000582857.2:ENST00000647056.1:ENST00000461069.6:ENST00000663089.1:ENST00000647252.1:ENST00000477478.7:ENST00000261499.11:ENST00000646248.1:ENST00000642870.2:ENST00000395616.7:ENST00000575478.7:ENST00000268841.10:ENST00000440841.1:ENST00000477683.5:ENST00000574508.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	10	2	2.50005	3.10478	3.70951	0.00342067	0.00201951	0.074991	0.0510613
chr1	50909483	50909583	614049	0	-	0.41	(0.392,0.424]	chr1	68288	511	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	39	2	3.09879	3.10293	3.10707	9.93983e-9	6.00852e-9	1.01027e-6	6.33384e-7
chr15	84798683	84798779	8067651	0	+	0.697917	(0.629,1]	chr15	745753	2	CDS	CDS:UTR3:EXON_MRNA	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000559607.1:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	2.59579	3.10201	3.60823	2.86682e-5	1.049e-8	0.00140136	1.06332e-6
chr13	113311067	113311167	7453723	0	+	0.53	(0.526,0.57]	chr13	686535	2	SS5_PROX	SS5_PROX:INTRON	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	2.57946	3.101505	3.62355	0.0110174	4.05302e-4	0.179063	0.0135138
chr3	141608627	141608697	2034435	0	+	0.514286	(0.49,0.526]	chr3	203279	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000509118.5:ENST00000506365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	66	2	2.79682	3.10147	3.40612	4.62484e-11	1e-12	6.50877e-9	1.72912e-10
chr10	32911964	32912044	6103397	0	-	0.4375	(0.424,0.459]	chr10	547071	2	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	35	2	2.92083	3.100765	3.2807	2.14921e-7	3.6459e-8	1.7005e-5	3.37452e-6
chr3	142016911	142017011	2455233	0	-	0.45	(0.424,0.459]	chr3	235681	110	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000471095.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	13	2	2.8224	3.1007350000000002	3.37907	0.00212808	2.98646e-4	0.0533203	0.0104901
chr1	184712432	184712515	821027	0	-	0.349398	(0.32,0.36]	chr1	91135	1	CDS	CDS:EXON_MRNA	EDEM3	ENSG00000116406.20	ENST00000318130.13:ENST00000367512.8:ENST00000689766.1:ENST00000686047.1:ENST00000687113.1:ENST00000686225.1:ENST00000685596.1:ENST00000685249.1:ENST00000687397.1:ENST00000692170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	16	2	2.90586	3.10061	3.29536	2.30802e-4	6.04067e-5	0.00844011	0.00268261
chr3	125370305	125370405	2419363	0	-	0.39	(0.36,0.392]	chr3	231886	126	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	7	14	2	2.77286	3.10058	3.4283	0.00178276	5.8205e-5	0.0462639	0.0026464
chr5	177592214	177592314	3402287	0	+	0.72	(0.629,1]	chr5	312414	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	67	2	2.22101	3.0992	3.97739	3.53025e-6	1e-12	2.16399e-4	1.72912e-10
chr6	157011901	157012001	3947603	0	+	0.4	(0.392,0.424]	chr6	358693	264	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	17	2	2.58183	3.097545	3.61326	0.00150665	5.82335e-6	0.0395097	3.40581e-4
chr2	190240895	190240995	1649833	0	-	0.33	(0.32,0.36]	chr2	169566	206	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000359678.10:ENST00000392332.7:ENST00000410045.5:ENST00000416732.5:ENST00000409820.2	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.97267	3.0972	3.22173	0.00701727	5.53769e-4	0.122029	0.0175806
chr6	75246764	75246864	4104149	0	-	0.35	(0.32,0.36]	chr6	374154	25	INTRON	INTRON	COX7A2	ENSG00000112695.13	ENST00000370081.6	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.97267	3.0972	3.22173	0.00701727	5.53769e-4	0.122029	0.0175806
chr15	99658430	99658530	8099017	0	+	0.39	(0.36,0.392]	chr15	748829	10	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000354410.9:ENST00000558812.5:ENST00000685785.1:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	12	2	2.51716	3.096435	3.67571	0.00691076	9.00428e-5	0.12284	0.00381913
chr17	5465980	5466079	8855029	0	-	0.565657	(0.526,0.57]	chr17	846573	19	INTRON	INTRON	DHX33	ENSG00000005100.13	ENST00000225296.8:ENST00000433302.7:ENST00000572490.1:ENST00000574023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	14	2	2.70959	3.09521	3.48083	0.00126833	0.00110295	0.0335079	0.0304129
chr7	65065952	65066052	4396645	0	+	0.48	(0.459,0.49]	chr7	396168	3	SS3_PROX	SS3_PROX:INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5:ENST00000452026.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	10	30	2	2.70254	3.0945799999999997	3.48662	5.05409e-4	1.09457e-9	0.0162415	1.28782e-7
chr20	64016722	64016783	9689242	0	+	0.672131	(0.629,1]	chr20	958018	1	CDS	CDS:EXON_MRNA	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	1.95088	3.0921849999999997	4.23349	1.53521e-5	1.0602e-10	7.96157e-4	1.42676e-8
chr12	32727112	32727204	7137030	0	-	0.336957	(0.32,0.36]	chr12	655476	9	EXON_PSEUDO	EXON_PSEUDO	ENSG00000257511	ENSG00000257511.1	ENST00000550917.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	16	2	3.07269	3.08955	3.10641	2.76345e-4	5.62304e-5	0.00984115	0.00256405
chr6	36087495	36087595	3766210	0	+	0.36	(0.32,0.36]	chr6	344238	105	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	52	2	2.92938	3.0893800000000002	3.24938	1.38577e-11	1.32698e-11	2.0906e-9	2.02626e-9
chr4	1805749	1805844	2544563	0	+	0.705263	(0.629,1]	chr4	244508	1	CDS	CDS:UTR3:EXON_MRNA	FGFR3	ENSG00000068078.20	ENST00000412135.7:ENST00000440486.8:ENST00000481110.7:ENST00000340107.8:ENST00000260795.8:ENST00000352904.6:ENST00000469068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	81	2	2.68168	3.088555	3.49543	7.10006e-9	1e-12	7.3827e-7	1.72912e-10
chrX	9505940	9506040	10077820	0	+	0.39	(0.36,0.392]	chrX	1005235	37	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	15	27	2	2.79947	3.088275	3.37708	1.4632e-5	5.30437e-8	7.80452e-4	4.72329e-6
chr17	67360994	67361094	8996743	0	-	0.41	(0.392,0.424]	chr17	867037	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	10	2	2.76656	3.087255	3.40795	0.0113141	5.07532e-4	0.181488	0.0162102
chr10	34331192	34331268	6108208	0	-	0.539474	(0.526,0.57]	chr10	547370	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000466092.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	23	2	2.81578	3.086395	3.35701	1.27192e-4	8.61246e-6	0.00504733	4.81312e-4
chr20	46401762	46401861	9751591	0	-	0.444444	(0.424,0.459]	chr20	966462	26	INTRON	INTRON	ELMO2	ENSG00000062598.18	ENST00000290246.11:ENST00000372176.5:ENST00000396391.5:ENST00000488853.5:ENST00000450812.5:ENST00000469801.5:ENST00000460474.5:ENST00000497412.5:ENST00000487583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	14	2	2.93356	3.0858	3.23804	0.00649971	6.28281e-5	0.114061	0.00278285
chrX	154437083	154437168	10244212	0	+	0.752941	(0.629,1]	chrX	1020640	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GDI1	ENSG00000203879.12	ENST00000630693.2:ENST00000447750.7:ENST00000445564.5:ENST00000475976.5:ENST00000434049.1:ENST00000415109.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	1.9665	3.085625	4.20475	0.00835666	5.9027e-7	0.14021	4.28474e-5
chr4	123024087	123024187	2730094	0	+	0.34	(0.32,0.36]	chr4	259686	331	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	11	2	2.77086	3.084885	3.39891	0.00179457	0.00108651	0.0449876	0.0301638
chr7	76623944	76624043	4438207	0	+	0.353535	(0.32,0.36]	chr7	399302	27	INTRON	INTRON	ENSG00000205485	ENSG00000205485.13	ENST00000418663.5:ENST00000450661.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	11	2	2.77086	3.084885	3.39891	0.00179457	0.00108651	0.0449876	0.0301638
chr11	93667606	93667673	6466203	0	+	0.373134	(0.36,0.392]	chr11	584314	1	CDS	CDS:EXON_MRNA	CEP295	ENSG00000166004.15	ENST00000325212.11	protein_coding	protein_coding	protein_coding	protein_coding	76	126	2	2.98526	3.08413	3.183	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	49180433	49180530	10341063	0	-	0.494845	(0.49,0.526]	chrX	1026919	2	INTRON	INTRON	PRICKLE3	ENSG00000012211.13	ENST00000599218.6:ENST00000540849.5:ENST00000453382.5:ENST00000432913.5:ENST00000376310.7:ENST00000376317.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	32	2	2.67269	3.08383	3.49497	1.05131e-4	5.38692e-9	0.00433634	5.70966e-7
chr12	132035604	132035703	7057925	0	+	0.585859	(0.57,0.629]	chr12	647307	31	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	52	2	2.7706	3.08336	3.39612	2.76959e-8	2.99599e-10	2.60877e-6	3.78366e-8
chr11	14577394	14577494	6572026	0	-	0.43	(0.424,0.459]	chr11	597392	571	INTRON	INTRON	PSMA1	ENSG00000129084.18	ENST00000418988.2	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	2.93877	3.082645	3.22652	8.23195e-4	1.43888e-4	0.0239037	0.00569484
chr17	7849132	7849231	8642103	0	+	0.666667	(0.629,1]	chr17	817339	17	CDS	CDS:EXON_MRNA	KDM6B	ENSG00000132510.11	ENST00000448097.7:ENST00000254846.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.76554	3.082	3.39846	0.0112307	5.39652e-4	0.181488	0.0171646
chr22	31754064	31754164	9934067	0	+	0.71	(0.629,1]	chr22	986844	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DEPDC5	ENSG00000100150.20	ENST00000535622.6:ENST00000642974.1:ENST00000645693.1:ENST00000645711.1:ENST00000644331.1:ENST00000645560.1:ENST00000437411.6:ENST00000433147.2:ENST00000645755.1:ENST00000643948.1:ENST00000400246.7:ENST00000644162.1:ENST00000646755.1:ENST00000469969.2:ENST00000382112.8:ENST00000400248.7:ENST00000647438.1:ENST00000642771.1:ENST00000646515.1:ENST00000456178.6:ENST00000643751.2:ENST00000646969.1:ENST00000642696.1:ENST00000647343.1:ENST00000642684.1:ENST00000651528.2:ENST00000400242.8:ENST00000645015.1:ENST00000646998.1:ENST00000643166.1:ENST00000645494.1:ENST00000646465.1:ENST00000645564.1:ENST00000643395.1:ENST00000400249.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.84021	3.081475	3.32274	0.00897489	7.60906e-4	0.155806	0.0223166
chr3	113745741	113745794	2384221	0	-	0.773585	(0.629,1]	chr3	229533	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NAA50	ENSG00000121579.14	ENST00000240922.8:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000481432.5:ENST00000493900.5:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	2.84021	3.081475	3.32274	0.00897489	7.60906e-4	0.155806	0.0223166
chrM	13572	13667	10480511	0	+	0.484211	(0.459,0.49]	chrM	1039009	14	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	24	61	2	3.03951	3.079325	3.11914	6.66899e-10	1e-12	8.06818e-8	1.72912e-10
chr11	10172255	10172355	6561218	0	-	0.31	[0,0.32]	chr11	596538	1278	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	31	2	2.84784	3.078505	3.30917	1.40469e-6	8.40785e-9	9.50205e-5	8.70613e-7
chr16	28715370	28715434	8363243	0	+	0.484375	(0.459,0.49]	chr16	779826	2	CDS	CDS:EXON_MRNA	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5	protein_coding	protein_coding	protein_coding	protein_coding	65	162	2	2.88682	3.07803	3.26924	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	60880377	60880477	3488575	0	-	0.41	(0.392,0.424]	chr5	319435	53	INTRON	INTRON	ERCC8	ENSG00000049167.16	ENST00000676185.1:ENST00000682217.1:ENST00000675042.2:ENST00000381118.7:ENST00000675378.1:ENST00000643034.1:ENST00000462279.5:ENST00000647431.2:ENST00000682375.1:ENST00000683216.1:ENST00000439176.6:ENST00000683052.1:ENST00000643708.1:ENST00000265038.10:ENST00000675452.2:ENST00000683460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	18	2	2.85768	3.077665	3.29765	1.04913e-4	6.27975e-5	0.00432856	0.00278264
chr1	36047347	36047447	107900	0	+	0.33	(0.32,0.36]	chr1	12279	34	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10:ENST00000471099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	19	2	2.79759	3.0776399999999997	3.35769	2.77506e-4	3.03605e-6	0.00987376	1.89971e-4
chr13	102644614	102644673	7441850	0	+	0.355932	(0.32,0.36]	chr13	684997	2	CDS	CDS:UTR3:EXON_MRNA	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1:ENST00000650771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	19	2	2.79759	3.0776399999999997	3.35769	2.77506e-4	3.03605e-6	0.00987376	1.89971e-4
chr7	97856689	97856752	4783501	0	-	0.380952	(0.36,0.392]	chr7	428325	1	CDS	CDS:EXON_MRNA	ASNS	ENSG00000070669.17	ENST00000394308.8:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	15	2	2.71919	3.073745	3.4283	9.0344e-4	5.8205e-5	0.025497	0.0026464
chr17	43296751	43296851	8938429	0	-	0.5	(0.49,0.526]	chr17	859071	666	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.97852	3.07268	3.16684	0.00470616	2.62984e-4	0.0901733	0.00942832
chr22	28391406	28391506	10005217	0	-	0.44	(0.424,0.459]	chr22	996538	844	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	17	2	2.70259	3.0719849999999997	3.44138	0.00129645	1.51347e-5	0.0346786	8.01855e-4
chrX	77844817	77844917	10385355	0	-	0.35	(0.32,0.36]	chrX	1030599	31	INTRON	INTRON	MAGT1	ENSG00000102158.22	ENST00000618282.5:ENST00000358075.11:ENST00000692161.1:ENST00000685015.1:ENST00000691993.1:ENST00000688650.1:ENST00000691172.1:ENST00000689519.1:ENST00000685353.1:ENST00000689137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	13	2	2.51516	3.07167	3.62818	0.0069482500000000004	2.31507e-5	0.121182	0.00117409
chr10	132331435	132331502	6290617	0	-	0.61194	(0.57,0.629]	chr10	562894	1	CDS	CDS:EXON_MRNA	STK32C	ENSG00000165752.17	ENST00000368620.2:ENST00000368619.3:ENST00000456004.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.6312	3.07161	3.51202	0.00652833	1.40194e-5	0.116779	7.50732e-4
chr1	234408651	234408750	888833	0	-	0.50505	(0.49,0.526]	chr1	98920	8	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2:ENST00000481183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	14	2	2.88418	3.0690749999999998	3.25397	0.00365962	4.05006e-4	0.0766409	0.0135138
chr12	49069633	49069733	7160111	0	-	0.64	(0.629,1]	chr12	658319	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHEBL1	ENSG00000167550.11	ENST00000301068.11:ENST00000420065.5:ENST00000550797.1:ENST00000550675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	29	2	2.44991	3.0689	3.68789	0.00162748	5.42566e-7	0.0410091	3.98095e-5
chr3	177181093	177181193	2499841	0	-	0.48	(0.459,0.49]	chr3	239263	98	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	13	2	2.91928	3.067985	3.21669	0.00264065	5.63284e-4	0.063308	0.0178211
chr5	160010697	160010767	3379845	0	+	0.528571	(0.526,0.57]	chr5	310163	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TTC1	ENSG00000113312.12	ENST00000682719.1:ENST00000522793.5:ENST00000682151.1:ENST00000684137.1:ENST00000682245.1:ENST00000682220.1:ENST00000684018.1:ENST00000683219.1:ENST00000682172.1:ENST00000231238.10:ENST00000682131.1:ENST00000684515.1:ENST00000683631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	67	2	2.93566	3.0673399999999997	3.19902	1.96018e-10	1e-12	2.55043e-8	1.72912e-10
chr12	57497064	57497162	6924470	0	+	0.438776	(0.424,0.459]	chr12	633330	61	INTRON	INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551892.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	13	2	3.0068	3.0666200000000003	3.12644	0.00341471	2.23036e-4	0.0729529	0.00816414
chr1	154604215	154604314	771450	0	-	0.474747	(0.459,0.49]	chr1	84813	12	INTRON	INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1:ENST00000526905.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	32	2	2.34588	3.064545	3.78321	8.10253e-4	8.35879e-11	0.0236684	1.13636e-8
chr19	10499846	10499933	9434640	0	-	0.62069	(0.57,0.629]	chr19	925247	4	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KEAP1	ENSG00000079999.14	ENST00000171111.10:ENST00000393623.6:ENST00000585845.1:ENST00000592055.2:ENST00000591419.2:ENST00000591039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6572	21069	2	3.03457	3.064045	3.09352	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	149127055	149127155	4576745	0	+	0.59	(0.57,0.629]	chr7	411619	4	SS5_PROX	SS5_PROX:INTRON	ZNF398	ENSG00000197024.9	ENST00000426851.6	protein_coding	protein_coding	protein_coding	protein_coding	19	63	2	2.77329	3.063815	3.35434	4.60981e-10	1.84591e-11	5.71192e-8	2.73328e-9
chr1	246102217	246102317	914476	0	-	0.35	(0.32,0.36]	chr1	100951	59	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	15	2	2.51516	3.0636349999999997	3.61211	0.0069482500000000004	2.61769e-6	0.121182	1.63848e-4
chr7	55064940	55065040	4390338	0	+	0.42	(0.392,0.424]	chr7	395429	210	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	31	2	2.88449	3.06358	3.24267	2.71917e-6	2.58386e-8	1.71475e-4	2.45413e-6
chr9	37464015	37464115	5614629	0	-	0.47	(0.459,0.49]	chr9	503537	211	INTRON	INTRON	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	2.85096	3.0630100000000002	3.27506	1.61211e-4	3.71826e-5	0.00615251	0.00178235
chr3	123949730	123949828	2415426	0	-	0.418367	(0.392,0.424]	chr3	231562	2	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000435910.5:ENST00000477268.5:ENST00000438440.2:ENST00000417438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	25	2	2.86005	3.062415	3.26478	5.61578e-6	2.82806e-6	3.29702e-4	1.7804e-4
chr7	102474260	102474360	4792566	0	-	0.73	(0.629,1]	chr7	430194	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.1836700000000002	3.06184	3.94001	0.00283208	7.28993e-6	0.0662445	4.19849e-4
chr17	43249659	43249759	8937958	0	-	0.61	(0.57,0.629]	chr17	859071	195	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	28	94	2	2.95911	3.06144	3.16377	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	167022559	167022635	3976010	0	+	0.394737	(0.392,0.424]	chr6	360575	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP43	ENSG00000213066.13	ENST00000622353.4:ENST00000366847.9:ENST00000349556.4:ENST00000496181.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	22	2	3.00598	3.06133	3.11668	4.28333e-5	4.23381e-6	0.0019752	2.57151e-4
chr17	5488392	5488490	8637827	0	+	0.428571	(0.424,0.459]	chr17	816040	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	MIS12	ENSG00000167842.16	ENST00000576988.1:ENST00000576570.5:ENST00000573759.1:ENST00000611091.5:ENST00000381165.3	protein_coding	protein_coding	protein_coding	protein_coding	8	17	2	2.5555	3.0611249999999997	3.56675	4.69004e-4	7.38392e-5	0.0154079	0.0032006
chr7	111216008	111216108	4815862	0	-	0.32	[0,0.32]	chr7	431926	2521	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	32	2	3.00738	3.060855	3.11433	3.43262e-7	2.21408e-8	2.61749e-5	2.1095e-6
chr2	55010120	55010202	1449023	0	-	0.414634	(0.392,0.424]	chr2	150261	1	UTR5	UTR5:EXON_MRNA:INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.84278	3.06034	3.2779	0.00949728	1.70556e-5	0.16275	8.75434e-4
chr16	89687711	89687763	8482704	0	+	0.596154	(0.57,0.629]	chr16	793188	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CDK10	ENSG00000185324.22	ENST00000331006.12:ENST00000505473.5:ENST00000508723.5:ENST00000511415.5:ENST00000502547.5:ENST00000353379.12:ENST00000505733.5:ENST00000512912.5:ENST00000510811.6:ENST00000507205.5:ENST00000472018.5:ENST00000625631.1:ENST00000564192.5:ENST00000378277.8:ENST00000514965.5:ENST00000503560.1:ENST00000504473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	63	2	2.86004	3.0595350000000003	3.25903	1.46958e-10	6.37731e-11	1.94433e-8	8.83344e-9
chr10	21735535	21735635	5812569	0	+	0.45	(0.424,0.459]	chr10	522969	3	SS5_PROX	SS5_PROX:INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	17	2	2.28724	3.0593950000000003	3.83155	0.00227848	1.07528e-5	0.0555721	5.78423e-4
chr3	38492646	38492745	1838225	0	+	0.292929	[0,0.32]	chr3	186054	95	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	7	12	2	2.93209	3.058375	3.18466	0.00104757	6.2959e-4	0.0292314	0.0193151
chr14	92081031	92081057	7901910	0	-	0.307692	[0,0.32]	chr14	728078	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN3	ENSG00000066427.25	ENST00000647161.1:ENST00000393287.9:ENST00000429774.6:ENST00000545170.5:ENST00000644486.2:ENST00000359366.10:ENST00000502250.5:ENST00000340660.10:ENST00000503767.5:ENST00000532032.5:ENST00000554592.5:ENST00000555381.5:ENST00000555816.5:ENST00000556898.5:ENST00000553287.5:ENST00000553309.5:ENST00000553488.5:ENST00000553491.5:ENST00000553498.5:ENST00000553570.5:ENST00000553686.5:ENST00000554040.5:ENST00000554214.5:ENST00000554350.5:ENST00000554491.5:ENST00000554994.5:ENST00000555958.5:ENST00000556220.5:ENST00000556274.5:ENST00000556288.5:ENST00000556339.5:ENST00000556374.5:ENST00000556644.5:ENST00000556671.5:ENST00000556958.5:ENST00000557311.6:ENST00000557030.6:ENST00000554672.6:ENST00000556082.6:ENST00000556315.6:ENST00000646485.1:ENST00000554673.5:ENST00000515746.6:ENST00000506466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	12	2	2.85158	3.058095	3.26461	0.00137297	4.77035e-4	0.0360194	0.0156573
chr11	47078709	47078809	6392627	0	+	0.4	(0.392,0.424]	chr11	572776	258	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	9	2	2.71627	3.057115	3.39796	0.00513884	0.00439831	0.0992178	0.0875511
chr13	49119902	49120001	7379757	0	+	0.40404	(0.392,0.424]	chr13	681807	48	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	9	2	2.71627	3.057115	3.39796	0.00513884	0.00439831	0.0992178	0.0875511
chr5	126827704	126827804	3306883	0	+	0.4	(0.392,0.424]	chr5	303610	12	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	9	2	2.71627	3.057115	3.39796	0.00513884	0.00439831	0.0992178	0.0875511
chr17	45148474	45148563	8724921	0	+	0.640449	(0.629,1]	chr17	828825	1	UTR5	UTR5:EXON_MRNA	HEXIM1	ENSG00000186834.4	ENST00000332499.4	protein_coding	protein_coding	protein_coding	protein_coding	23	108	2	2.43139	3.05626	3.68113	3.75687e-10	1e-12	4.69119e-8	1.73382e-10
chr2	61036188	61036287	1043790	0	+	0.434343	(0.424,0.459]	chr2	111478	37	INTRON	INTRON	PEX13	ENSG00000162928.9	ENST00000295030.6	protein_coding	protein_coding	protein_coding	protein_coding	19	40	2	2.71984	3.054785	3.38973	2.69157e-7	5.13813e-10	2.11229e-5	6.29624e-8
chr4	165328222	165328322	2781097	0	+	0.44	(0.424,0.459]	chr4	263779	1	SS5_PROX	SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	4	10	2	2.46913	3.05477	3.64041	0.0100222	0.00115507	0.164581	0.0316008
chr15	72262790	72262887	8232401	0	-	0.443299	(0.424,0.459]	chr15	764049	7	INTRON	INTRON	PARP6	ENSG00000137817.17	ENST00000569795.6:ENST00000287196.13:ENST00000413097.6:ENST00000260376.11:ENST00000616176.4:ENST00000565443.5:ENST00000544520.5:ENST00000567974.5:ENST00000564610.5:ENST00000567440.5:ENST00000419739.7:ENST00000565999.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	39	2	2.84632	3.0535449999999997	3.26077	8.47836e-7	3.38104e-10	5.98561e-5	4.21876e-8
chr1	52179867	52179967	145721	0	+	0.47	(0.459,0.49]	chr1	17815	371	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	17	2	2.53709	3.0533099999999997	3.56953	0.00154068	4.08493e-5	0.0389999	0.00193677
chr19	48868260	48868349	9523906	0	-	0.483146	(0.459,0.49]	chr19	940725	3	UTR5	UTR5:EXON_MRNA	PLEKHA4	ENSG00000105559.12	ENST00000263265.11:ENST00000355496.9	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	2.68952	3.0524649999999998	3.41541	0.00206127	5.24075e-8	0.0505307	4.67929e-6
chr20	34104243	34104332	9727531	0	-	0.505618	(0.49,0.526]	chr20	963016	3	INTRON	INTRON	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	2.71913	3.0516949999999996	3.38426	0.00122099	7.26508e-6	0.0323167	4.19717e-4
chr11	9291702	9291801	6556940	0	-	0.535354	(0.526,0.57]	chr11	596231	28	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	17	2	2.40577	3.0505050000000002	3.69524	8.62466e-4	3.03531e-4	0.0248025	0.0107298
chr11	74020296	74020396	6647201	0	-	0.42	(0.392,0.424]	chr11	609235	31	INTRON	INTRON	C2CD3	ENSG00000168014.18	ENST00000334126.12:ENST00000442398.7:ENST00000680231.1:ENST00000680839.1:ENST00000681609.1:ENST00000681291.1:ENST00000681924.1:ENST00000680665.1:ENST00000538625.2:ENST00000681385.1:ENST00000681811.1:ENST00000681143.1:ENST00000679415.1:ENST00000679906.1:ENST00000681829.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	15	2	2.63664	3.0503549999999997	3.46407	0.00277883	2.50033e-5	0.0657788	0.0012382
chr3	32556138	32556238	2227822	0	-	0.48	(0.459,0.49]	chr3	215494	98	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	14	2	2.788	3.050345	3.31269	0.00308309	3.42937e-4	0.0699986	0.0119676
chr17	49414822	49414905	8960757	0	-	0.578313	(0.57,0.629]	chr17	862028	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHB	ENSG00000167085.14	ENST00000696365.1:ENST00000300408.8:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1:ENST00000513412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	17	2	2.84467	3.050155	3.25564	0.00224807	1.26225e-4	0.0552099	0.00501499
chr4	13604687	13604786	2841353	0	-	0.40404	(0.392,0.424]	chr4	269119	59	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	65	117	2	2.48111	3.0492600000000003	3.61741	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	122299634	122299734	5482069	0	+	0.5	(0.49,0.526]	chr9	489945	74	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000470366.5:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	34	2	2.7402	3.048095	3.35599	1.28074e-6	4.23918e-7	8.72782e-5	3.18839e-5
chr1	15643521	15643567	54530	0	+	0.478261	(0.459,0.49]	chr1	5085	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	15	2	2.96081	3.04744	3.13407	7.72738e-4	4.52907e-4	0.0225969	0.0150584
chr3	101737249	101737349	1942105	0	+	0.43	(0.424,0.459]	chr3	195832	42	INTRON	INTRON	CEP97	ENSG00000182504.11	ENST00000489172.5:ENST00000341893.8:ENST00000494050.5:ENST00000467655.1:ENST00000462076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	35	2	2.4747	3.04635	3.618	8.18672e-6	8.83055e-10	4.6204e-4	1.04662e-7
chr5	150399809	150399908	3357177	0	+	0.585859	(0.57,0.629]	chr5	308661	1	UTR3	UTR3:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000515516.1	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	2.82888	3.04565	3.26242	5.64728e-5	1.01567e-5	0.00257392	5.53203e-4
chr19	5208891	5208988	9415865	0	-	0.474227	(0.459,0.49]	chr19	921436	1	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000587303.5:ENST00000588012.5:ENST00000592099.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	8	2	3.00648	3.04542	3.08436	0.0112903	0.00939464	0.181488	0.161654
chr8	1993895	1993995	4917318	0	+	0.46	(0.459,0.49]	chr8	439582	196	INTRON	INTRON	KBTBD11	ENSG00000176595.4	ENST00000320248.4	protein_coding	protein_coding	protein_coding	protein_coding	2	8	2	3.00648	3.04542	3.08436	0.0112903	0.00939464	0.181488	0.161654
chr9	33346537	33346637	5368621	0	+	0.48	(0.459,0.49]	chr9	479352	1	SS3_PROX	SS3_PROX:INTRON	NFX1	ENSG00000086102.19	ENST00000379521.8:ENST00000379540.8:ENST00000318524.6:ENST00000466971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	8	2	3.00648	3.04542	3.08436	0.0112903	0.00939464	0.181488	0.161654
chr19	38648099	38648192	9344575	0	+	0.516129	(0.49,0.526]	chr19	907166	2	SS5_PROX	SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	25	2	2.92124	3.0438799999999997	3.16652	7.17059e-5	4.242e-6	0.00310931	2.52654e-4
chr3	12609196	12609296	2175902	0	-	0.4	(0.392,0.424]	chr3	212591	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000692830.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000693069.1:ENST00000491290.2:ENST00000686479.1:ENST00000691268.1:ENST00000689033.1:ENST00000685959.1:ENST00000416093.2:ENST00000692777.1:ENST00000689226.1:ENST00000687348.1:ENST00000492690.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	48	88	2	2.7285	3.04346	3.35842	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	63215576	63215601	9778594	0	-	0.28	[0,0.32]	chr20	969666	1	CDS	CDS:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	9	15	2	2.66204	3.043425	3.42481	0.00202535	1.547e-5	0.0511848	8.12938e-4
chr16	29973964	29974062	8367920	0	+	0.642857	(0.629,1]	chr16	780799	2	UTR5	UTR5:EXON_MRNA	TAOK2	ENSG00000149930.18	ENST00000308893.9	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.71102	3.04317	3.37532	3.98595e-5	4.14498e-7	0.00187459	3.10839e-5
chr1	92389900	92390000	233216	0	+	0.42	(0.392,0.424]	chr1	23284	30	UTR3	UTR3:EXON_MRNA	RPAP2	ENSG00000122484.9	ENST00000610020.2	protein_coding	protein_coding	protein_coding	protein_coding	8	15	2	2.46166	3.04315	3.62464	0.00113806	1.11057e-4	0.030384	0.00448562
chr11	57309081	57309180	6607074	0	-	0.626263	(0.57,0.629]	chr11	601801	8	CDS	CDS:UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	51	2	2.53242	3.042275	3.55213	1.19633e-6	1.10377e-11	8.18644e-5	1.69538e-9
chr3	174455216	174455316	2090849	0	+	0.38	(0.36,0.392]	chr3	206467	138	INTRON	INTRON	NAALADL2	ENSG00000177694.16	ENST00000491329.5:ENST00000482228.5:ENST00000481679.5:ENST00000478624.1:ENST00000495900.5:ENST00000434257.1:ENST00000489729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	15	2	2.98999	3.041995	3.094	4.36075e-4	1.4895e-4	0.014643	0.00574636
chr4	150838249	150838349	3055017	0	-	0.39	(0.36,0.392]	chr4	283620	59	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	18	2	3.02295	3.040915	3.05888	0.00109343	3.98027e-6	0.029258	2.42577e-4
chr13	24302597	24302673	7335623	0	+	0.671053	(0.629,1]	chr13	678112	1	CDS	CDS:EXON_MRNA	SPATA13	ENSG00000182957.16	ENST00000424834.6:ENST00000382108.8:ENST00000382095.8:ENST00000434675.5:ENST00000343003.10:ENST00000399949.6:ENST00000409126.5	protein_coding	protein_coding	protein_coding	protein_coding	51	240	2	2.76221	3.039755	3.3173	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	207766114	207766214	417648	0	+	0.45	(0.424,0.459]	chr1	45094	43	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000695785.1:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	14	2	2.60189	3.0396099999999997	3.47733	0.00187347	2.01844e-4	0.0464423	0.00755335
chr17	20205513	20205607	8674579	0	+	0.404255	(0.392,0.424]	chr17	820857	13	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SPECC1	ENSG00000128487.19	ENST00000677148.1:ENST00000679048.1:ENST00000678019.1:ENST00000678315.1:ENST00000678321.1:ENST00000676570.1:ENST00000678651.1:ENST00000679049.1:ENST00000472876.5:ENST00000467722.3:ENST00000583528.6:ENST00000680019.1:ENST00000395527.9:ENST00000681593.1:ENST00000680830.1:ENST00000680124.1:ENST00000583482.7:ENST00000679255.1:ENST00000681202.1:ENST00000677914.1:ENST00000578321.2:ENST00000680374.1:ENST00000583463.6:ENST00000681564.1:ENST00000681116.1:ENST00000681875.1:ENST00000680604.1:ENST00000680572.1:ENST00000679058.1:ENST00000395529.7:ENST00000261503.9:ENST00000581973.7:ENST00000580934.2:ENST00000680740.1:ENST00000579688.2:ENST00000395530.6:ENST00000581399.6:ENST00000679819.1:ENST00000681545.1:ENST00000680373.1:ENST00000679801.1:ENST00000681731.1:ENST00000679740.1:ENST00000395522.6:ENST00000395525.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	39	2	2.6219	3.03925	3.4566	1.2173e-6	6.16703e-11	8.32802e-5	8.56119e-9
chr11	96249294	96249394	6715778	0	-	0.39	(0.36,0.392]	chr11	613450	1554	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	11	20	2	2.59456	3.039065	3.48357	6.58392e-4	6.69835e-7	0.0198487	4.83503e-5
chr1	179227440	179227540	813441	0	-	0.36	(0.32,0.36]	chr1	90525	845	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	21	2	2.33023	3.0389799999999996	3.74773	3.77588e-4	5.24437e-7	0.0127523	3.8706e-5
chr7	111344180	111344280	4817144	0	-	0.46	(0.459,0.49]	chr7	431926	3803	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	16	2	2.66682	3.03829	3.40976	0.00873764	1.03329e-5	0.144342	5.57702e-4
chr4	41571163	41571263	2612403	0	+	0.42	(0.392,0.424]	chr4	250104	194	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1:ENST00000503057.6:ENST00000511496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	36	2	2.88449	3.0369450000000002	3.1894	2.71917e-6	4.13286e-10	1.71475e-4	5.14272e-8
chr12	20510579	20510679	6843470	0	+	0.43	(0.424,0.459]	chr12	625044	1400	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	36	2	2.99055	3.036835	3.08312	5.56447e-7	1.07575e-8	4.08157e-5	1.08933e-6
chr4	183886020	183886119	2805987	0	+	0.525253	(0.49,0.526]	chr4	265321	318	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	64	2	2.99754	3.0357950000000002	3.07405	6.05188e-11	3.91664e-12	8.4612e-9	6.31113e-10
chr11	12784029	12784129	6325998	0	+	0.47	(0.459,0.49]	chr11	567860	192	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.7486	3.034795	3.32099	0.00700666	2.2051e-4	0.12393	0.00809052
chr2	71395372	71395471	1070925	0	+	0.474747	(0.459,0.49]	chr2	113802	2	UTR3	UTR3:EXON_MRNA:INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000491843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	13	2	2.7486	3.034795	3.32099	0.00700666	2.2051e-4	0.12393	0.00809052
chr12	20390335	20390434	6842267	0	+	0.434343	(0.424,0.459]	chr12	625044	197	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	25	2	2.60234	3.0334250000000003	3.46451	3.05025e-5	1.6041e-6	0.00149907	1.05645e-4
chr1	224252111	224252210	866517	0	-	0.494949	(0.49,0.526]	chr1	96381	14	INTRON	INTRON	NVL	ENSG00000143748.18	ENST00000391875.6:ENST00000469968.5:ENST00000489194.5:ENST00000482491.5:ENST00000281701.11:ENST00000469075.5:ENST00000340871.8:ENST00000496393.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	22	2	2.01151	3.032235	4.05296	0.0107498	8.11406e-8	0.175404	7.06304e-6
chr11	27405398	27405498	6583841	0	-	0.36	(0.32,0.36]	chr11	598926	125	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	11	17	2	2.11934	3.032135	3.94493	0.00476914	8.63412e-7	0.0913331	6.08224e-5
chr11	66003350	66003373	6417939	0	+	0.478261	(0.459,0.49]	chr11	577927	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524663.1:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5:ENST00000527348.1:ENST00000528648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	10	2	2.7486	3.030645	3.31269	0.00700666	0.00308309	0.12393	0.0699986
chr12	4274235	4274335	6807256	0	+	0.75	(0.629,1]	chr12	621126	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCND2	ENSG00000118971.9	ENST00000676411.1:ENST00000676279.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5050	22862	2	3.00767	3.029895	3.05212	1.39655e-12	1e-12	2.35903e-10	1.73382e-10
chrX	23783965	23784047	10104077	0	+	0.353659	(0.32,0.36]	chrX	1007325	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000379253.7:ENST00000379251.7:ENST00000489394.5:ENST00000487713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	17	2	2.71717	3.029515	3.34186	9.10347e-4	6.80419e-6	0.0260463	3.95433e-4
chr1	228289088	228289188	449586	0	+	0.46	(0.459,0.49]	chr1	48505	2	SS5_PROX	SS5_PROX:INTRON	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000284548.16:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1:ENST00000483539.3	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.66682	3.029055	3.39129	0.00873764	0.00244536	0.144342	0.0587626
chr16	21466791	21466891	8530305	0	-	0.49	(0.459,0.49]	chr16	801450	3	SS5_PROX	SS5_PROX:INTRON	SMG1P3	ENSG00000180747.15	ENST00000520823.6:ENST00000522480.5:ENST00000522841.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	10	2	2.66682	3.029055	3.39129	0.00873764	0.00244536	0.144342	0.0587626
chr19	44811846	44811946	9358511	0	+	0.48	(0.459,0.49]	chr19	910347	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BCAM	ENSG00000187244.12	ENST00000611077.5:ENST00000270233.12:ENST00000588303.1:ENST00000591520.6:ENST00000588603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	10	2	2.66682	3.029055	3.39129	0.00873764	0.00244536	0.144342	0.0587626
chrX	13766826	13766926	10084732	0	+	0.48	(0.459,0.49]	chrX	1005902	3	SS3_PROX	SS3_PROX:INTRON	OFD1	ENSG00000046651.16	ENST00000380567.6:ENST00000684577.1:ENST00000683427.1:ENST00000683284.1:ENST00000683713.1:ENST00000340096.11:ENST00000682953.1:ENST00000682237.1:ENST00000464463.6:ENST00000683655.1:ENST00000682562.1:ENST00000398395.8:ENST00000380550.6:ENST00000683055.1:ENST00000490265.6:ENST00000683454.1:ENST00000683637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	10	2	2.66682	3.029055	3.39129	0.00873764	0.00244536	0.144342	0.0587626
chr14	30575484	30575583	7577733	0	+	0.444444	(0.424,0.459]	chr14	698450	5	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5:ENST00000554714.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	10	2	2.72297	3.0271850000000002	3.3314	0.00517898	0.00293552	0.0992178	0.0672936
chr8	19338548	19338648	4940327	0	+	0.45	(0.424,0.459]	chr8	441511	33	INTRON	INTRON	SH2D4A	ENSG00000104611.12	ENST00000265807.8:ENST00000518040.5:ENST00000519207.5:ENST00000523736.1	protein_coding	protein_coding	protein_coding	protein_coding	4	10	2	2.72297	3.0271850000000002	3.3314	0.00517898	0.00293552	0.0992178	0.0672936
chr10	48372746	48372846	5845549	0	+	0.45	(0.424,0.459]	chr10	525582	77	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	2.89055	3.026915	3.16328	0.0011776	3.60142e-4	0.0313499	0.01248
chr6	5181706	5181806	3996398	0	-	0.46	(0.459,0.49]	chr6	362049	371	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	19	2	2.16118	3.026845	3.89251	0.00659564	1.23517e-6	0.117905	8.43676e-5
chr10	32560167	32560267	5830750	0	+	0.39	(0.36,0.392]	chr10	524150	155	INTRON	INTRON	CCDC7	ENSG00000216937.14	ENST00000639629.2:ENST00000277657.12:ENST00000362006.11:ENST00000476558.7:ENST00000639041.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	10	2	2.76763	3.0266200000000003	3.28561	0.00445622	0.0015215	0.0875511	0.0397018
chr4	159343280	159343342	2779404	0	+	0.387097	(0.36,0.392]	chr4	263550	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000644902.1:ENST00000264431.8:ENST00000502485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	10	2	2.76763	3.0266200000000003	3.28561	0.00445622	0.0015215	0.0875511	0.0397018
chr8	140889843	140889942	5299320	0	-	0.434343	(0.424,0.459]	chr8	473175	99	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	2.48643	3.0265899999999997	3.56675	0.00447569	7.38392e-5	0.0903474	0.0032006
chr1	155527808	155527908	777099	0	-	0.54	(0.526,0.57]	chr1	85749	58	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	19	2	2.89374	3.02552	3.1573	4.45312e-4	8.33799e-5	0.0146627	0.00355751
chr17	38476879	38476978	8709062	0	+	0.535354	(0.526,0.57]	chr17	825283	45	INTRON	INTRON	ARHGAP23	ENSG00000275832.5	ENST00000622683.5:ENST00000620417.4:ENST00000619156.1:ENST00000616909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	22	2	2.81578	3.02492	3.23406	1.27192e-4	2.85504e-5	0.00504733	0.00139623
chr16	87708450	87708466	8618488	0	-	0.5	(0.49,0.526]	chr16	812841	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000569487.1:ENST00000562155.5:ENST00000622456.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	35	2	3.01644	3.024535	3.03263	5.79238e-7	4.32743e-7	4.24487e-5	3.25066e-5
chr3	195699100	195699200	2146116	0	+	0.44	(0.424,0.459]	chr3	210394	3	PRIMIRNA	PRIMIRNA	MIR570	ENSG00000207650.1	ENST00000384917.1	miRNA	primary_miRNA	miRNA	primary_miRNA	29	61	2	2.70347	3.024285	3.3451	3.78694e-8	1e-12	3.5018e-6	1.72912e-10
chr16	30737843	30737942	8370494	0	+	0.606061	(0.57,0.629]	chr16	781597	9	CDS	CDS:EXON_MRNA	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.54498	3.0239649999999996	3.50295	0.00846131	6.5426e-4	0.140721	0.0199608
chr19	40025322	40025412	9496633	0	-	0.422222	(0.392,0.424]	chr19	935366	6	EXON_PSEUDO	EXON_PSEUDO	ENSG00000269069	ENSG00000269069.1	ENST00000597336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	11	2	2.97135	3.02372	3.07609	0.00280132	0.00130048	0.0645347	0.0347373
chr1	229300866	229300966	451145	0	+	0.41	(0.392,0.424]	chr1	48944	14	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	16	2	2.58183	3.02295	3.46407	0.00150665	2.50033e-5	0.0395097	0.0012382
chr11	61802111	61802211	6613490	0	-	0.5	(0.49,0.526]	chr11	603239	26	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5	protein_coding	protein_coding	protein_coding	protein_coding	38	102	2	2.90849	3.022935	3.13738	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	50894318	50894415	9765060	0	-	0.350515	(0.32,0.36]	chr20	967775	4	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	55	81	2	2.76391	3.02223	3.28055	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	41167896	41167995	580691	0	-	0.353535	(0.32,0.36]	chr1	65835	50	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000695336.1	protein_coding	protein_coding	protein_coding	protein_coding	20	30	2	2.91464	3.022205	3.12977	7.35725e-6	1.5876e-8	4.23318e-4	1.56039e-6
chr14	61712303	61712402	7646893	0	+	0.484848	(0.459,0.49]	chr14	703698	130	INTRON	INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000553999.5:ENST00000557446.5:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5:ENST00000557206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	15	2	3.00155	3.021725	3.0419	0.00201907	1.95784e-4	0.0510613	0.00725539
chr7	158949617	158949716	4600885	0	+	0.626263	(0.57,0.629]	chr7	414348	34	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000454771.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	9	31	2	2.77974	3.02108	3.26242	1.01567e-5	3.15524e-6	5.53203e-4	1.97057e-4
chr12	11025706	11025806	7086588	0	-	0.38	(0.36,0.392]	chr12	651846	32	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	35	57	2	2.68139	3.0204899999999997	3.35959	1.87457e-9	1e-12	2.1337e-7	1.72912e-10
chr4	82900333	82900411	2935695	0	-	0.551282	(0.526,0.57]	chr4	276094	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5:ENST00000509007.1:ENST00000504869.1:ENST00000503704.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	24	67	2	2.80121	3.019175	3.23714	1.66991e-10	1e-12	2.18419e-8	1.72912e-10
chr3	128906749	128906843	1988077	0	+	0.56383	(0.526,0.57]	chr3	199947	1	INTRON	INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000679715.1:ENST00000511526.5:ENST00000508971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	22	2	2.93862	3.019135	3.09965	9.3122e-5	4.25861e-5	0.00393198	0.0019751
chr22	38317159	38317252	10035388	0	-	0.83871	(0.629,1]	chr22	1000309	1	UTR5	UTR5:EXON_MRNA:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000403904.5:ENST00000413574.6:ENST00000405675.7	protein_coding	protein_coding	protein_coding	protein_coding	10	50	2	2.97593	3.01897	3.06201	1.91696e-7	7.81067e-8	1.56398e-5	6.76733e-6
chr19	49085418	49085490	9373103	0	+	0.75	(0.629,1]	chr19	912671	1	UTR5	UTR5:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.71511	3.0189250000000003	3.32274	0.00203575	7.60906e-4	0.0513388	0.0223166
chr3	97874839	97874939	1931695	0	+	0.41	(0.392,0.424]	chr3	195027	31	CDS	CDS:EXON_MRNA	CRYBG3	ENSG00000080200.10	ENST00000389622.7	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.63664	3.0172999999999996	3.39796	0.00439831	0.00277883	0.0875511	0.0657788
chr19	35497933	35498015	9480833	0	-	0.487805	(0.459,0.49]	chr19	932739	1	SS3_PROX	SS3_PROX:INTRON	DMKN	ENSG00000161249.21	ENST00000339686.8:ENST00000462721.5:ENST00000402589.6:ENST00000488542.6:ENST00000434389.5:ENST00000460327.5:ENST00000408915.6:ENST00000490622.5:ENST00000488762.5:ENST00000436012.5:ENST00000467532.5:ENST00000414866.6:ENST00000480502.5:ENST00000469960.5:ENST00000467637.5:ENST00000478648.6:ENST00000486756.6:ENST00000484064.5:ENST00000601368.5:ENST00000419602.5:ENST00000429837.5:ENST00000462126.5:ENST00000443640.5:ENST00000597212.5:ENST00000472252.6:ENST00000593342.5:ENST00000601650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	37	2	2.79593	3.0166	3.23727	6.4056e-7	5.16208e-8	4.63619e-5	4.68193e-6
chr17	4671884	4671981	8852218	0	-	0.690722	(0.629,1]	chr17	845874	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PELP1	ENSG00000141456.16	ENST00000572293.7:ENST00000301396.8:ENST00000436683.6:ENST00000574876.5:ENST00000573523.5:ENST00000575329.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.91389	3.015245	3.1166	5.22361e-4	1.41787e-4	0.0167376	0.00568047
chr19	48139870	48139970	9520571	0	-	0.57	(0.526,0.57]	chr19	939879	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000542460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	47	2	2.24776	3.0151	3.78244	5.67006e-5	1e-12	0.00257126	1.73382e-10
chrX	77845916	77846016	10385366	0	-	0.44	(0.424,0.459]	chrX	1030599	42	INTRON	INTRON	MAGT1	ENSG00000102158.22	ENST00000618282.5:ENST00000358075.11:ENST00000692161.1:ENST00000685015.1:ENST00000691993.1:ENST00000688650.1:ENST00000691172.1:ENST00000689519.1:ENST00000685353.1:ENST00000689137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	91	2	2.86682	3.014625	3.16243	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	87726564	87726664	8618675	0	-	0.84	(0.629,1]	chr16	812860	4	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000562913.5:ENST00000567513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.9761	3.013655	3.05121	0.00463564	0.00356029	0.089408	0.0753972
chr5	160010767	160010837	3379846	0	+	0.314286	[0,0.32]	chr5	310163	3	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TTC1	ENSG00000113312.12	ENST00000682719.1:ENST00000522793.5:ENST00000682151.1:ENST00000684137.1:ENST00000682245.1:ENST00000682220.1:ENST00000684018.1:ENST00000683219.1:ENST00000682172.1:ENST00000231238.10:ENST00000682131.1:ENST00000684515.1:ENST00000683631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	46	2	2.55319	3.012665	3.47214	2.78055e-9	5.41313e-11	3.0689e-7	7.58237e-9
chr1	171562291	171562389	340867	0	+	0.479592	(0.459,0.49]	chr1	38111	8	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	2.71691	3.012435	3.30796	3.24467e-5	2.57785e-6	0.0015821	1.6148e-4
chr1	145927426	145927484	749624	0	-	0.568965	(0.526,0.57]	chr1	80494	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM8A	ENSG00000265241.8	ENST00000583313.7:ENST00000691760.1:ENST00000632555.1:ENST00000692065.1:ENST00000369307.4:ENST00000498663.5:ENST00000484825.1:ENST00000634161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	30	2	2.93862	3.0122999999999998	3.08598	4.25861e-5	2.35947e-7	0.0019751	1.85591e-5
chr16	74363074	74363173	8599008	0	-	0.525253	(0.49,0.526]	chr16	810474	18	INTRON	INTRON	PDPR2P	ENSG00000214331.8	ENST00000566802.5:ENST00000429810.2	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron	3	11	2	2.60562	3.01199	3.41836	0.0102832	0.00136895	0.170122	0.0359623
chr17	6583533	6583632	8857597	0	-	0.363636	(0.36,0.392]	chr17	846860	33	INTRON	INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000576281.5:ENST00000570790.5:ENST00000572370.5:ENST00000542826.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	24	2	2.93504	3.01089	3.08674	1.59916e-5	1.76136e-6	8.28386e-4	1.16856e-4
chr15	89642202	89642269	8271611	0	-	0.716418	(0.629,1]	chr15	768162	1	CDS	CDS:EXON_MRNA	KIF7	ENSG00000166813.17	ENST00000696512.1:ENST00000394412.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.86171	3.01076	3.15981	0.00188809	8.48224e-4	0.0466341	0.0240064
chr10	11861511	11861611	5789829	0	+	0.57	(0.526,0.57]	chr10	521425	89	INTRON	INTRON	PROSER2	ENSG00000148426.13	ENST00000474155.1:ENST00000277570.10:ENST00000622831.4:ENST00000444604.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	30	2	2.17021	3.01067	3.85113	4.13969e-4	1.80251e-8	0.013778200000000001	1.76838e-6
chr4	41257222	41257318	2610150	0	+	0.708333	(0.629,1]	chr4	250015	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCHL1	ENSG00000154277.13	ENST00000514924.5:ENST00000503431.5:ENST00000381760.8:ENST00000512419.5:ENST00000284440.9:ENST00000505232.5:ENST00000504818.5:ENST00000508768.5:ENST00000512788.1:ENST00000472501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	34	2	2.67235	3.010665	3.34898	1.58614e-5	1.26368e-5	8.25219e-4	6.65422e-4
chr10	48337149	48337249	5845192	0	+	0.33	(0.32,0.36]	chr10	525576	108	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	18	2	2.67794	3.0099	3.34186	4.63564e-4	6.80419e-6	0.0152502	3.95433e-4
chr17	7239145	7239245	8860442	0	-	0.69	(0.629,1]	chr17	847320	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PHF23	ENSG00000040633.13	ENST00000571362.5:ENST00000320316.8:ENST00000576955.5:ENST00000613632.4:ENST00000570899.1	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.76711	3.0094950000000003	3.25188	2.05698e-4	3.84594e-5	0.00769131	0.0018139
chr7	30390884	30390959	4349625	0	+	0.48	(0.459,0.49]	chr7	392737	1	EXON_LNCRNA	EXON_LNCRNA	LINC01176	ENSG00000281404.2	ENST00000628121.1:ENST00000414621.1	lncRNA	lncRNA	lncRNA	lncRNA	11	29	2	2.69035	3.009475	3.3286	5.86109e-5	1.11644e-7	0.00262682	9.35227e-6
chr14	102011874	102011953	7756639	0	+	0.556962	(0.526,0.57]	chr14	712097	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	43	2	2.8621	3.009295	3.15649	1.8954e-7	5.64613e-9	1.52747e-5	5.98994e-7
chr14	68478997	68479096	7675224	0	+	0.494949	(0.49,0.526]	chr14	705809	10	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000557045.5:ENST00000554183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	24	2	2.89086	3.008835	3.12681	8.09548e-5	1.23424e-5	0.00346783	6.65348e-4
chr21	9125708	9125806	9839495	0	-	0.459184	(0.424,0.459]	chr21	976684	9	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	16	2	2.89055	3.008495	3.12644	3.60142e-4	2.23036e-4	0.01248	0.00816414
chr1	999973	1000072	491060	0	-	0.838384	(0.629,1]	chr1	51984	1	UTR5	UTR5:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.47168	3.00837	3.54506	0.00639682	2.07184e-4	0.114061	0.00773072
chr17	76710604	76710684	9017297	0	-	0.8	(0.629,1]	chr17	870790	1	CDS	CDS:EXON_MRNA	MXRA7	ENSG00000182534.14	ENST00000355797.7:ENST00000449428.7:ENST00000375036.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.781	3.00813	3.23526	0.00139352	0.00122107	0.037038	0.0323167
chr8	47486432	47486532	4982088	0	+	0.44	(0.424,0.459]	chr8	447053	455	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	49	2	2.96708	3.007855	3.04863	8.49901e-9	2.97203e-11	8.74884e-7	4.31505e-9
chr18	23975015	23975115	9193195	0	-	0.41	(0.392,0.424]	chr18	885999	58	INTRON	INTRON	ENSG00000265752	ENSG00000265752.3	ENST00000582300.2:ENST00000664669.1	lncRNA	lncRNA	lncRNA	lncRNA	11	18	2	1.82809	3.00713	4.18617	0.0115177	3.41477e-7	0.184943	2.62392e-5
chr14	66705759	66705859	7661611	0	+	0.4	(0.392,0.424]	chr14	705179	242	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000556020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	13	2	2.71627	3.0069600000000003	3.29765	0.00513884	1.04913e-4	0.0992178	0.00432856
chrM	837	933	10480390	0	+	0.46875	(0.459,0.49]	chrM	1038986	3	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1186	2749	2	2.96057	3.006925	3.05328	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	58677317	58677417	5864130	0	+	0.37	(0.36,0.392]	chr10	526303	266	INTRON	INTRON	BICC1	ENSG00000122870.12	ENST00000373886.8	protein_coding	protein_coding	protein_coding	protein_coding	7	13	2	2.98999	3.00647	3.02295	0.00109343	4.36075e-4	0.029258	0.014643
chr17	62652869	62652969	8769495	0	+	0.68	(0.629,1]	chr17	834492	246	INTRON	INTRON	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000584265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.09939	3.0058350000000003	3.91228	0.00408309	1.12818e-5	0.0825355	6.02727e-4
chr6	41894193	41894280	4060594	0	-	0.436782	(0.424,0.459]	chr6	370126	4	UTR5	UTR5:EXON_MRNA:INTRON	USP49	ENSG00000164663.15	ENST00000682992.1:ENST00000373006.5:ENST00000423567.1	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	2.56804	3.00471	3.44138	0.00769936	1.51347e-5	0.135524	8.01855e-4
chr3	4554469	4554569	1751720	0	+	0.59	(0.57,0.629]	chr3	179435	330	INTRON	INTRON	ITPR1	ENSG00000150995.21	ENST00000357086.10:ENST00000649015.2:ENST00000354582.12:ENST00000467056.6:ENST00000456211.8:ENST00000443694.5:ENST00000648266.1:ENST00000477577.2:ENST00000544951.6:ENST00000650294.1:ENST00000648309.1:ENST00000302640.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	17	2	2.40221	3.0041200000000003	3.60603	0.00185505	2.87788e-4	0.0474587	0.0101506
chr1	7463430	7463530	18690	0	+	0.48	(0.459,0.49]	chr1	1905	2135	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	3.00155	3.004015	3.00648	0.0112903	0.00201907	0.181488	0.0510613
chr1	9730607	9730705	513861	0	-	0.571429	(0.57,0.629]	chr1	55184	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	155	480	2	2.98364	3.0031049999999997	3.02257	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	82861630	82861708	2935272	0	-	0.551282	(0.526,0.57]	chr4	275984	1	CDS	CDS:EXON_MRNA:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1:ENST00000512732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	37	2	2.4923	3.002985	3.51367	2.98903e-6	4.43614e-8	1.84401e-4	4.04814e-6
chr5	71509761	71509860	3208052	0	+	0.454545	(0.424,0.459]	chr5	296025	4	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	61	120	2	2.4825	3.00237	3.52224	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	151349893	151349991	3933219	0	+	0.418367	(0.392,0.424]	chr6	358025	13	CDS	CDS:EXON_MRNA	AKAP12	ENSG00000131016.17	ENST00000402676.7:ENST00000253332.5:ENST00000354675.10:ENST00000359755.5	protein_coding	protein_coding	protein_coding	protein_coding	9	17	2	2.46166	3.0023150000000003	3.54297	0.00113806	1.67511e-5	0.030384	8.60936e-4
chr2	97813570	97813670	1518205	0	-	0.34	(0.32,0.36]	chr2	158273	2	SS5_PROX	SS5_PROX:INTRON	TMEM131	ENSG00000075568.17	ENST00000186436.10	protein_coding	protein_coding	protein_coding	protein_coding	16	25	2	2.933	3.00153	3.07006	1.6185e-5	4.79804e-7	8.41904e-4	3.57232e-5
chr10	35413147	35413247	5836596	0	+	0.49	(0.459,0.49]	chr10	524506	179	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	17	2	2.96081	3.001355	3.0419	4.52907e-4	1.95784e-4	0.0150584	0.00725539
chr1	1308720	1308787	1823	0	+	0.80597	(0.629,1]	chr1	468	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PUSL1	ENSG00000169972.12	ENST00000379031.10:ENST00000470520.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	2.39989	3.0009550000000003	3.60202	0.00251311	1.20607e-4	0.0603141	0.00489816
chr3	141426465	141426565	2032949	0	+	0.63	(0.629,1]	chr3	203121	3	SS5_PROX	SS5_PROX:INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1:ENST00000441582.2:ENST00000510726.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.76554	3.0004	3.23526	0.0112307	0.00139352	0.181488	0.037038
chr1	206594628	206594726	847209	0	-	0.479592	(0.459,0.49]	chr1	94351	7	EXON_MRNA	EXON_MRNA:INTRON	EIF2D	ENSG00000143486.16	ENST00000472709.6:ENST00000271764.7:ENST00000367114.7:ENST00000617960.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	18	2	2.51403	3.00024	3.48645	7.72473e-4	6.16705e-5	0.0228237	0.00276144
chr11	118790655	118790754	6759115	0	-	0.666667	(0.629,1]	chr11	616813	4	SS5_PROX	SS5_PROX:INTRON	DDX6	ENSG00000110367.14	ENST00000534980.7:ENST00000620157.4:ENST00000526070.2:ENST00000525082.1:ENST00000533239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.84021	3.0000099999999996	3.15981	0.00897489	0.00188809	0.155806	0.0466341
chr1	225920165	225920261	870582	0	-	0.583333	(0.57,0.629]	chr1	96969	4	UTR3	UTR3:EXON_MRNA	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	10	2	2.95732	2.99808	3.03884	0.00848479	0.00676458	0.140721	0.1204
chr19	19527536	19527618	9311767	0	+	0.609756	(0.57,0.629]	chr19	902443	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA13	ENSG00000186010.19	ENST00000502506.6:ENST00000507754.9:ENST00000503283.5:ENST00000428459.6:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	10	2	2.95732	2.99808	3.03884	0.00848479	0.00676458	0.140721	0.1204
chr16	4870574	4870634	8310827	0	+	0.566667	(0.526,0.57]	chr16	774273	2	CDS	CDS:EXON_MRNA	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	20	56	2	2.45536	2.99778	3.5402	6.84491e-7	1e-12	4.92496e-5	1.73382e-10
chr1	144937644	144937744	745533	0	-	0.41	(0.392,0.424]	chr1	79966	225	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2:ENST00000621582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	15	2	2.30301	2.99765	3.69229	0.0122095	3.72291e-6	0.186377	2.27625e-4
chr15	48756460	48756553	8155640	0	-	0.344086	(0.32,0.36]	chr15	756176	7	CDS	CDS:EXON_MRNA	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9	protein_coding	protein_coding	protein_coding	protein_coding	17	26	2	2.70359	2.99758	3.29157	8.97842e-6	4.15604e-7	5.01126e-4	3.1145e-5
chr11	61516169	61516267	6612540	0	-	0.673469	(0.629,1]	chr11	603118	26	UTR3	UTR3:EXON_MRNA	SYT7	ENSG00000011347.10	ENST00000539008.6:ENST00000263846.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.44991	2.997485	3.54506	0.00162748	2.07184e-4	0.0410091	0.00773072
chr17	63709396	63709495	8980894	0	-	0.363636	(0.36,0.392]	chr17	865273	15	INTRON	INTRON	STRADA	ENSG00000266173.7	ENST00000640870.1:ENST00000639835.1:ENST00000638708.1:ENST00000336174.12:ENST00000375840.9:ENST00000640999.1:ENST00000245865.10:ENST00000638702.1:ENST00000447001.8:ENST00000640979.1:ENST00000392950.9:ENST00000640086.1:ENST00000640679.1:ENST00000638276.1:ENST00000638888.1:ENST00000640827.1:ENST00000640397.1:ENST00000638698.1:ENST00000638193.1:ENST00000582137.6:ENST00000580039.6:ENST00000639521.1:ENST00000579340.5:ENST00000578801.6:ENST00000640174.1:ENST00000579318.2:ENST00000638309.1:ENST00000640183.1:ENST00000639135.1:ENST00000578008.6:ENST00000617949.4:ENST00000581243.6:ENST00000638578.1:ENST00000640741.1:ENST00000639192.1:ENST00000640707.1:ENST00000639603.1:ENST00000638718.1:ENST00000581505.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	28	2	1.85216	2.9959100000000003	4.13966	0.00406346	1.17436e-11	0.082267	1.79779e-9
chrX	74099598	74099698	10375342	0	-	0.47	(0.459,0.49]	chrX	1030008	297	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000652609.1:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1	lncRNA	lncRNA	lncRNA	lncRNA	9	24	2	2.57643	2.9948050000000004	3.41318	3.83201e-4	7.25881e-7	0.0129331	5.19414e-5
chr1	89896227	89896327	231201	0	+	0.56	(0.526,0.57]	chr1	23061	492	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.83139	2.99471	3.15803	0.00482649	0.00350122	0.0920354	0.0746524
chr6	167951549	167951640	3978027	0	+	0.56044	(0.526,0.57]	chr6	360790	5	CDS	CDS:EXON_MRNA	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	11	2	2.83139	2.99471	3.15803	0.00482649	0.00350122	0.0920354	0.0746524
chr16	83032078	83032148	8459031	0	+	0.514286	(0.49,0.526]	chr16	791472	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CDH13	ENSG00000140945.17	ENST00000268613.14:ENST00000569144.5:ENST00000567109.6:ENST00000568770.5:ENST00000539548.6:ENST00000428848.7:ENST00000431540.7:ENST00000565636.5:ENST00000566333.1:ENST00000569454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	20	2	2.41554	2.9940350000000002	3.57253	8.2417e-4	2.38382e-5	0.023918	0.00119556
chr12	128663817	128663917	7051567	0	+	0.6	(0.57,0.629]	chr12	646502	471	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.95732	2.993955	3.03059	0.00848479	7.55212e-4	0.140721	0.0225125
chr5	34802213	34802313	3145369	0	+	0.47	(0.459,0.49]	chr5	290400	58	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000514527.5:ENST00000510319.5:ENST00000513974.5:ENST00000512629.5:ENST00000428746.6:ENST00000514873.5:ENST00000508777.5:ENST00000503673.5:ENST00000504052.5:ENST00000512305.5:ENST00000514036.5:ENST00000515799.5:ENST00000508315.5:ENST00000503222.5:ENST00000512625.5:ENST00000506376.1:ENST00000502736.5:ENST00000507276.5:ENST00000509247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	77	2	2.77988	2.99284	3.2058	2.04871e-11	1e-12	3.00373e-9	1.72912e-10
chr4	182173538	182173638	2795812	0	+	0.44	(0.424,0.459]	chr4	264794	284	INTRON	INTRON	TENM3	ENSG00000218336.9	ENST00000513201.1:ENST00000512480.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	12	2	2.72297	2.992065	3.26116	0.00293552	8.43922e-4	0.0672936	0.0240064
chr20	38969147	38969214	9651285	0	+	0.507463	(0.49,0.526]	chr20	953120	2	CDS	CDS:EXON_MRNA	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	23	2	2.19165	2.991965	3.79228	0.00771297	5.01041e-8	0.130982	4.48358e-6
chr16	2267367	2267464	8493372	0	-	0.57732000000000006	(0.57,0.629]	chr16	795812	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000561518.5:ENST00000564311.5:ENST00000570051.5:ENST00000564601.5:ENST00000566180.5:ENST00000562690.5:ENST00000564822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	2.94363	2.991235	3.03884	0.00676458	0.00107587	0.1204	0.0288605
chr16	14920797	14920860	8331348	0	+	0.619048	(0.57,0.629]	chr16	776001	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P3	ENSG00000183458.14	ENST00000534164.6:ENST00000537889.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	13	2	2.94363	2.991235	3.03884	0.00676458	0.00107587	0.1204	0.0288605
chrX	72184273	72184370	10161377	0	+	0.474227	(0.459,0.49]	chrX	1012893	20	INTRON	INTRON	PIN4	ENSG00000102309.15	ENST00000373662.4:ENST00000423432.6:ENST00000664196.1:ENST00000218432.10:ENST00000373669.8:ENST00000439980.7:ENST00000652108.2:ENST00000496835.7:ENST00000446576.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	18	2	2.57643	2.99015	3.40387	3.83201e-4	1.53229e-4	0.0129331	0.00595859
chr1	632519	632616	31	0	+	0.443299	(0.424,0.459]	chr1	3	16	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	68	131	2	2.97066	2.9898100000000003	3.00896	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	13863379	13863479	8877008	0	-	0.41	(0.392,0.424]	chr17	849473	700	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000577798.6:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	36	63	2	2.98587	2.989635	2.9934	5.84499e-12	1e-12	9.32039e-10	1.73382e-10
chr1	212619357	212619455	426276	0	+	0.459184	(0.424,0.459]	chr1	45936	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATF3	ENSG00000162772.17	ENST00000366987.6:ENST00000366981.8:ENST00000613954.4:ENST00000341491.9:ENST00000366985.5:ENST00000492118.2:ENST00000464547.5:ENST00000366983.5:ENST00000613104.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	14	2	2.93877	2.98867	3.03857	8.23195e-4	5.63002e-4	0.0239037	0.0178211
chr12	20369190	20369284	6842055	0	+	0.691489	(0.629,1]	chr12	625039	8	UTR5	UTR5:EXON_MRNA	PDE3A	ENSG00000172572.7	ENST00000359062.4	protein_coding	protein_coding	protein_coding	protein_coding	21	86	2	2.52129	2.98836	3.45543	3.83306e-11	1.01056e-11	5.46407e-9	1.5589e-9
chr12	20511279	20511379	6843477	0	+	0.39	(0.36,0.392]	chr12	625044	1407	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	11	2	2.51716	2.9880050000000002	3.45885	0.00691076	4.24507e-4	0.12284	0.0140677
chr14	71616363	71616462	7688493	0	+	0.373737	(0.36,0.392]	chr14	706612	177	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5	protein_coding	protein_coding	protein_coding	protein_coding	6	11	2	2.51716	2.9880050000000002	3.45885	0.00691076	4.24507e-4	0.12284	0.0140677
chr10	121487890	121487990	6274114	0	-	0.58	(0.57,0.629]	chr10	561489	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000683029.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	59	2	2.33366	2.9877000000000002	3.64174	3.51571e-8	2.79422e-11	3.23881e-6	4.06246e-9
chr9	6013187	6013287	5548523	0	-	0.38	(0.36,0.392]	chr9	499415	9	CDS	CDS:EXON_MRNA	RANBP6	ENSG00000137040.10	ENST00000259569.6	protein_coding	protein_coding	protein_coding	protein_coding	6	11	2	2.68866	2.9871350000000003	3.28561	0.00234853	0.0015215	0.0566232	0.0397018
chr13	30461456	30461533	7477835	0	-	0.415584	(0.392,0.424]	chr13	688903	1	CDS	CDS:UTR3:EXON_MRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4	protein_coding	protein_coding	protein_coding	protein_coding	30	51	2	2.68345	2.987045	3.29064	1.09124e-9	1.96635e-11	1.28485e-7	2.90009e-9
chr5	126624574	126624659	3306329	0	+	0.341176	(0.32,0.36]	chr5	303544	1	CDS	CDS:EXON_MRNA	PHAX	ENSG00000164902.14	ENST00000297540.5:ENST00000511371.1:ENST00000513813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	22	2	2.94887	2.986995	3.02512	1.36648e-4	1.18502e-6	0.00548551	8.11839e-5
chr7	128342883	128342980	4841248	0	-	0.515464	(0.49,0.526]	chr7	433608	13	INTRON	INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000478061.5:ENST00000459726.1	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.71913	2.98655	3.25397	0.00365962	0.00122099	0.0766409	0.0323167
chr2	27225087	27225165	960735	0	+	0.653846	(0.629,1]	chr2	104955	2	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.13683	2.986365	3.8359	0.00144272	1.86609e-5	0.0382827	9.4788e-4
chr10	34331116	34331192	6108207	0	-	0.473684	(0.459,0.49]	chr10	547370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000466092.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	55	2	2.64103	2.9860100000000003	3.33099	1.23788e-9	6.88263e-11	1.44639e-7	9.4717e-9
chr6	127475782	127475880	4187200	0	-	0.642857	(0.629,1]	chr6	381173	6	CDS	CDS:EXON_MRNA	SOGA3	ENSG00000214338.10	ENST00000525778.5:ENST00000465909.2	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.09009	2.985945	3.8818	0.0122043	0.0064023	0.194706	0.114061
chr19	17337611	17337664	9303131	0	+	0.735849	(0.629,1]	chr19	900593	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000601213.5:ENST00000594345.5:ENST00000598038.5:ENST00000600995.5:ENST00000595951.1:ENST00000596941.5:ENST00000596218.5:ENST00000599429.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000596166.5:ENST00000593297.5:ENST00000601261.5:ENST00000602165.1:ENST00000596001.5:ENST00000600610.5:ENST00000594018.5:ENST00000599329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	2.57158	2.98502	3.39846	7.34532e-4	5.39652e-4	0.0220209	0.0171646
chr19	38844504	38844604	9493685	0	-	0.46	(0.459,0.49]	chr19	934636	4	SS3_PROX	SS3_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	38	2	2.90906	2.984925	3.06079	5.8177e-6	2.11746e-9	3.4137e-4	2.38829e-7
chr4	57079694	57079794	2909164	0	-	0.32	[0,0.32]	chr4	273659	142	INTRON	INTRON	IGFBP7	ENSG00000163453.11	ENST00000295666.6:ENST00000514062.2	protein_coding	protein_coding	protein_coding	protein_coding	4	7	2	2.61711	2.984435	3.35176	0.0119953	0.0102933	0.184357	0.170122
chr11	83157258	83157348	6457702	0	+	0.688889	(0.629,1]	chr11	583595	4	UTR5	UTR5:EXON_MRNA	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1:ENST00000624931.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	24	106	2	2.80132	2.98409	3.16686	1.27209e-12	1e-12	2.17274e-10	1.72912e-10
chr15	67180045	67180144	8014325	0	+	0.545455	(0.526,0.57]	chr15	741081	51	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	32	2	2.64965	2.98331	3.31697	3.36229e-5	7.66083e-8	0.00159406	6.63929e-6
chr9	130872213	130872313	5516653	0	+	0.67	(0.629,1]	chr9	495076	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.91389	2.98255	3.05121	0.00356029	5.22361e-4	0.0753972	0.0167376
chr1	29166912	29167012	556306	0	-	0.39	(0.36,0.392]	chr1	61807	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4:ENST00000605204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	62	2	2.85948	2.982235	3.10499	8.45068e-10	1e-12	1.00886e-7	1.72912e-10
chr18	21623888	21623918	9074211	0	+	0.433333	(0.424,0.459]	chr18	876811	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	9	19	2	2.28724	2.9821	3.67696	0.00227848	2.06956e-6	0.0555721	1.34728e-4
chr1	50909383	50909483	614048	0	-	0.43	(0.424,0.459]	chr1	68288	510	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	19	2	2.73713	2.9818249999999997	3.22652	1.43888e-4	7.11745e-5	0.00569484	0.00309409
chr21	15831476	15831552	9783653	0	+	0.407895	(0.392,0.424]	chr21	970432	2	CDS	CDS:EXON_MRNA:INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000453553.1	protein_coding	protein_coding	protein_coding	protein_coding	7	14	2	2.77414	2.98109	3.18804	9.93591e-4	3.14916e-4	0.0276375	0.0110581
chrM	13001	13096	10480505	0	+	0.557895	(0.526,0.57]	chrM	1039009	8	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	13	29	2	2.11953	2.9801200000000003	3.84071	1.07679e-4	1.0554e-6	0.00442392	7.33653e-5
chr14	67953616	67953716	7669957	0	+	0.49	(0.459,0.49]	chr14	705758	444	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	30	2	2.72129	2.97928	3.23727	8.39916e-6	6.4056e-7	4.73402e-4	4.63619e-5
chr5	37523987	37524087	3153292	0	+	0.47	(0.459,0.49]	chr5	291417	70	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	53	2	2.9365	2.97859	3.02068	2.07086e-8	9.9134e-12	1.9883e-6	1.53367e-9
chr17	8264211	8264274	8643150	0	+	0.619048	(0.57,0.629]	chr17	817816	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PFAS	ENSG00000178921.14	ENST00000580356.5:ENST00000314666.11:ENST00000585319.5:ENST00000583059.1:ENST00000581288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	31	2	2.93119	2.9778599999999997	3.02453	1.12289e-5	2.97203e-6	6.02727e-4	1.8616e-4
chrX	54548956	54549053	10132882	0	+	0.402062	(0.392,0.424]	chrX	1010793	7	EXON_MRNA	EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674300.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	19	2	2.54178	2.97744	3.4131	8.19729e-4	4.16676e-6	0.0238903	2.48371e-4
chr8	127840059	127840159	5088399	0	+	0.56	(0.526,0.57]	chr8	455244	198	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	7	20	2	2.48416	2.9772800000000004	3.4704	5.96893e-4	4.12702e-5	0.01884	0.00192437
chr18	21623918	21623939	9074212	0	+	0.380952	(0.36,0.392]	chr18	876812	1	CDS	CDS:UTR3:EXON_MRNA	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	15	25	2	2.93504	2.977055	3.01907	1.59916e-5	1.01912e-6	8.28386e-4	7.12757e-5
chr5	122826121	122826193	3300570	0	+	0.333333	(0.32,0.36]	chr5	303153	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	9	2	2.24435	2.97693	3.70951	0.0121019	0.00201951	0.185048	0.0510613
chr5	21470585	21470662	3134210	0	+	0.571429	(0.57,0.629]	chr5	289694	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000685140.1:ENST00000449061.3:ENST00000685932.1:ENST00000692990.1:ENST00000690861.1:ENST00000508973.6:ENST00000685731.1:ENST00000688956.1:ENST00000688960.1:ENST00000687425.1:ENST00000691878.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	16	2	2.84467	2.9763599999999997	3.10805	0.00224807	3.71519e-4	0.0552099	0.0125602
chr10	13125492	13125567	5796646	0	+	0.36	(0.32,0.36]	chr10	521856	2	CDS	CDS:EXON_MRNA	OPTN	ENSG00000123240.17	ENST00000263036.9:ENST00000378764.6:ENST00000378747.8:ENST00000378757.6:ENST00000378748.7:ENST00000378752.7	protein_coding	protein_coding	protein_coding	protein_coding	10	16	2	2.48925	2.97583	3.46241	0.00170315	1.27559e-5	0.0428145	6.71363e-4
chr6	165839992	165840092	4269146	0	-	0.52	(0.49,0.526]	chr6	386909	109	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	18	2	2.6912	2.9750699999999997	3.25894	3.55208e-4	2.88576e-4	0.0120456	0.010254
chr10	119038439	119038539	6271772	0	-	0.25	[0,0.32]	chr10	561019	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	13	21	2	2.58115	2.9741850000000003	3.36722	0.00263617	3.41575e-8	0.0633023	3.15033e-6
chr5	116167365	116167464	3286505	0	+	0.464646	(0.459,0.49]	chr5	302259	328	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	33	2	2.23014	2.973455	3.71677	4.11028e-4	3.08295e-10	0.0136895	3.88433e-8
chr19	54448462	54448558	9539321	0	-	0.541667	(0.526,0.57]	chr19	943736	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LENG8-AS1	ENSG00000226696.7	ENST00000429922.5:ENST00000416022.1:ENST00000686924.1:ENST00000693322.1:ENST00000448978.1	lncRNA	lncRNA	lncRNA	lncRNA	9	20	2	2.13655	2.973235	3.80992	6.79033e-4	1.14789e-4	0.020682	0.00467969
chr15	34533260	34533359	8126563	0	-	0.515152	(0.49,0.526]	chr15	751901	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	121	310	2	2.96515	2.97295	2.98075	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	87668596	87668674	5419326	0	+	0.525641	(0.49,0.526]	chr9	483887	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000408954.8:ENST00000622514.4:ENST00000491893.5:ENST00000489291.5:ENST00000466188.1:ENST00000497743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	63	2	2.35148	2.9716050000000003	3.59173	5.24288e-8	1e-12	4.67989e-6	1.73382e-10
chr10	116940538	116940612	6266334	0	-	0.472973	(0.459,0.49]	chr10	560712	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	60	2	2.68016	2.970945	3.26173	8.71709e-9	1e-12	9.01694e-7	1.72912e-10
chr1	28531802	28531896	89919	0	+	0.62766	(0.57,0.629]	chr1	9790	1	CDS	CDS:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000486790.2:ENST00000430407.1	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	2.55	2.96976	3.38952	6.95774e-4	4.23084e-5	0.0211658	0.00196405
chr17	19323830	19323930	8670665	0	+	0.38	(0.36,0.392]	chr17	820395	102	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000395626.5:ENST00000571254.1:ENST00000572627.6:ENST00000585097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	20	2	2.79957	2.969215	3.13886	6.23401e-5	2.09336e-5	0.00276428	0.00104621
chr19	11380106	11380198	9436685	0	-	0.5	(0.49,0.526]	chr19	925807	10	INTRON	INTRON	EPOR	ENSG00000187266.14	ENST00000222139.11:ENST00000592375.6:ENST00000588681.5:ENST00000588859.5:ENST00000591958.5:ENST00000586890.5:ENST00000590927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	14	2	2.60562	2.968665	3.33171	0.0102832	1.30693e-4	0.170122	0.00517526
chr17	7576810	7576881	8641367	0	+	0.633803	(0.629,1]	chr17	817102	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A1:SNORD10	ENSG00000161960.16:ENSG00000238917.1	ENST00000293831.13:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5:ENST00000459579.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay	9	42	2	2.49269	2.96861	3.44453	1.46992e-5	1.6617e-7	7.83758e-4	1.36401e-5
chrM	6291	6387	10480440	0	+	0.552083	(0.526,0.57]	chrM	1038991	4	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	49	130	2	2.6985	2.9682	3.2379	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	10068410	10068509	1760781	0	+	0.272727	[0,0.32]	chr3	181064	7	INTRON	INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000470757.5:ENST00000480909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	27	2	2.81207	2.968165	3.12426	1.08049e-4	1.03406e-8	0.00442392	1.04853e-6
chr12	52943222	52943322	7167808	0	-	0.52	(0.49,0.526]	chr12	659833	169	INTRON	INTRON	KRT8	ENSG00000170421.13	ENST00000552551.5:ENST00000546897.5:ENST00000546826.5:ENST00000548998.5	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	2.19822	2.96758	3.73694	0.00407028	3.40684e-6	0.0824741	2.10826e-4
chr12	122604876	122604946	7039731	0	+	0.5	(0.49,0.526]	chr12	645441	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000377192.6:ENST00000436959.7:ENST00000541466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	66	2	2.89635	2.967215	3.03808	1.99498e-11	1.00769e-11	2.93941e-9	1.55523e-9
chr19	54456394	54456465	9386736	0	+	0.746479	(0.629,1]	chr19	915833	2	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	15	67	2	2.74479	2.96599	3.18719	6.69255e-9	5.62198e-10	6.96869e-7	6.86562e-8
chr12	19694638	19694738	6841785	0	+	0.41	(0.392,0.424]	chr12	625034	1415	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000512223.6	protein_coding	protein_coding	protein_coding	protein_coding	6	12	2	2.38155	2.964385	3.54722	0.00993679	1.52245e-4	0.169739	0.0058275
chr20	46071830	46071930	9750814	0	-	0.41	(0.392,0.424]	chr20	966277	9	INTRON	INTRON	NCOA5	ENSG00000124160.12	ENST00000290231.11:ENST00000372291.3	protein_coding	protein_coding	protein_coding	protein_coding	6	12	2	2.38155	2.964385	3.54722	0.00993679	1.52245e-4	0.169739	0.0058275
chr12	20551461	20551561	6843879	0	+	0.52	(0.49,0.526]	chr12	625044	1809	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	503	1268	2	2.91235	2.96404	3.01573	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	141112825	141112925	3025086	0	-	0.42	(0.392,0.424]	chr4	282513	587	INTRON	INTRON	RNF150	ENSG00000170153.11	ENST00000515673.7:ENST00000420921.6:ENST00000306799.7:ENST00000506101.2:ENST00000507500.5	protein_coding	protein_coding	protein_coding	protein_coding	16	28	2	2.67107	2.963255	3.25544	6.5337e-6	4.75992e-7	3.80745e-4	3.56298e-5
chr16	47210281	47210381	8549390	0	-	0.33	(0.32,0.36]	chr16	805038	473	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	26	2	2.73416	2.9631600000000002	3.19216	3.10047e-5	3.60269e-7	0.00149513	2.76404e-5
chr11	14244789	14244889	6332249	0	+	0.52	(0.49,0.526]	chr11	568188	10	INTRON	INTRON	SPON1	ENSG00000262655.4	ENST00000576479.4	protein_coding	protein_coding	protein_coding	protein_coding	24	63	2	2.89635	2.96095	3.02555	1.79216e-10	1.00769e-11	2.3359e-8	1.55523e-9
chr20	46354282	46354381	9751085	0	-	0.555556	(0.526,0.57]	chr20	966300	12	INTRON	INTRON	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000317734.12:ENST00000480329.5:ENST00000487729.5:ENST00000484318.5:ENST00000481809.1:ENST00000420518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	16	2	2.52322	2.960435	3.39765	0.00370126	9.51513e-5	0.0806443	0.00399331
chr6	166333492	166333592	4270786	0	-	0.56	(0.526,0.57]	chr6	387001	17	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	16	2	2.52322	2.960435	3.39765	0.00370126	9.51513e-5	0.0806443	0.00399331
chr15	58691294	58691393	8192121	0	-	0.474747	(0.459,0.49]	chr15	759550	86	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	12	2	2.91928	2.9604150000000002	3.00155	0.00264065	0.00201907	0.063308	0.0510613
chr11	95808827	95808926	6472092	0	+	0.424242	(0.392,0.424]	chr11	584934	91	INTRON	INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	9	2	2.84278	2.959435	3.07609	0.00949728	0.00280132	0.16275	0.0645347
chrX	63463771	63463871	10356549	0	-	0.4	(0.392,0.424]	chrX	1028603	309	INTRON	INTRON	LINC01278	ENSG00000235437.9	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000654880.1:ENST00000664356.1:ENST00000666437.1:ENST00000670203.1:ENST00000656953.1:ENST00000669201.1:ENST00000666216.1:ENST00000659222.1:ENST00000662689.1:ENST00000662779.1:ENST00000608788.6:ENST00000609143.7:ENST00000669422.1:ENST00000665831.1:ENST00000609401.6:ENST00000671033.1:ENST00000656972.1:ENST00000662156.1:ENST00000670242.1:ENST00000665925.1:ENST00000654240.1:ENST00000671338.1	lncRNA	lncRNA	lncRNA	lncRNA	4	9	2	2.84278	2.959435	3.07609	0.00949728	0.00280132	0.16275	0.0645347
chr11	47014846	47014945	6391983	0	+	0.323232	(0.32,0.36]	chr11	572760	100	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000522712.6:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	34	2	2.7557	2.959215	3.16273	6.80182e-7	7.14112e-9	4.92813e-5	7.42466e-7
chr11	108806770	108806870	6489015	0	+	0.43	(0.424,0.459]	chr11	586741	384	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	10	2	2.90943	2.9581150000000003	3.0068	0.00449434	0.00341471	0.0875511	0.0729529
chr1	162747501	162747601	321949	0	+	0.43	(0.424,0.459]	chr1	36331	280	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000671979.1:ENST00000415555.5:ENST00000672207.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	44	2	2.64267	2.9577099999999996	3.27275	8.56282e-7	1.38692e-11	6.13398e-5	2.09136e-9
chr19	43659786	43659884	9506439	0	-	0.397959	(0.392,0.424]	chr19	937257	28	INTRON	INTRON	PLAUR	ENSG00000011422.12	ENST00000339082.7:ENST00000340093.8:ENST00000601723.5:ENST00000221264.8:ENST00000593714.5:ENST00000599892.5:ENST00000597107.1:ENST00000602141.5:ENST00000593939.5:ENST00000593396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	16	2	2.55773	2.957655	3.35758	0.00357576	1.10011e-5	0.0781496	5.91284e-4
chr18	225088	225139	9162881	0	-	0.431373	(0.424,0.459]	chr18	882960	1	CDS	CDS:UTR3:EXON_MRNA	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000584470.5:ENST00000579891.5:ENST00000577552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	24	2	2.23031	2.957025	3.68374	8.60464e-4	9.50035e-8	0.024764	8.12845e-6
chr9	18899188	18899288	5357252	0	+	0.41	(0.392,0.424]	chr9	478086	62	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1:ENST00000380548.9:ENST00000380559.7:ENST00000542621.5:ENST00000380545.9:ENST00000388710.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	27	2	2.3866	2.956625	3.52665	2.09395e-4	1.47612e-8	0.00773314	1.46109e-6
chr5	150357687	150357746	3356714	0	+	0.813559	(0.629,1]	chr5	308525	2	UTR5	UTR5:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000646961.1:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.68379	2.956365	3.22894	3.27062e-4	5.70876e-5	0.0111814	0.00258625
chr5	93742830	93742930	3540340	0	-	0.4	(0.392,0.424]	chr5	322887	45	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	13	2	2.36514	2.95618	3.54722	0.00522888	1.52245e-4	0.0992178	0.0058275
chr12	57096086	57096183	7179856	0	-	0.525773	(0.49,0.526]	chr12	662671	8	UTR3	UTR3:EXON_MRNA	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000651176.1:ENST00000553533.2:ENST00000554764.6:ENST00000555222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	14	2	2.19165	2.9561200000000003	3.72059	0.00771297	2.73826e-4	0.130982	0.00975361
chr5	115208905	115209005	3574260	0	-	0.38	(0.36,0.392]	chr5	324610	50	UTR3	UTR3:EXON_MRNA	PGGT1B	ENSG00000164219.10	ENST00000419445.6	protein_coding	protein_coding	protein_coding	protein_coding	10	16	2	2.4832	2.95575	3.4283	8.48231e-4	5.8205e-5	0.0240064	0.0026464
chrX	48983774	48983870	10340177	0	-	0.510417	(0.49,0.526]	chrX	1026626	1	CDS	CDS:EXON_MRNA	GRIPAP1	ENSG00000068400.13	ENST00000619149.4:ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000619107.1:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	86	218	2	2.78068	2.955135	3.12959	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	110715107	110715207	4810848	0	-	0.33	(0.32,0.36]	chr7	431911	497	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	16	2	2.71717	2.954665	3.19216	9.10347e-4	3.10047e-5	0.0260463	0.00149513
chr14	74114295	74114394	7701590	0	+	0.484848	(0.459,0.49]	chr14	707883	1	INTRON	INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	14	2	2.77363	2.95385	3.13407	0.00152008	7.72738e-4	0.0397018	0.0225969
chr5	41781639	41781739	3456596	0	-	0.47	(0.459,0.49]	chr5	317850	191	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000512084.5:ENST00000510634.5:ENST00000509987.1:ENST00000508557.5:ENST00000513081.5:ENST00000514723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	14	2	2.77363	2.95385	3.13407	0.00152008	7.72738e-4	0.0397018	0.0225969
chr5	177266587	177266685	3401099	0	+	0.489796	(0.459,0.49]	chr5	312153	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000439151.7:ENST00000689345.1:ENST00000347982.9:ENST00000687453.1:ENST00000685206.1:ENST00000688613.1:ENST00000508029.6:ENST00000692024.1:ENST00000503056.6:ENST00000504457.5:ENST00000505395.5:ENST00000687095.1:ENST00000515735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	14	2	2.77363	2.95385	3.13407	0.00152008	7.72738e-4	0.0397018	0.0225969
chr16	67066699	67066798	8407486	0	+	0.484848	(0.459,0.49]	chr16	786805	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000567947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	49	2	2.50729	2.953265	3.39924	7.52235e-9	2.78365e-9	7.8059e-7	3.08141e-7
chr12	88561713	88561813	7229599	0	-	0.46	(0.459,0.49]	chr12	666587	155	INTRON	INTRON	KITLG	ENSG00000049130.16	ENST00000347404.10:ENST00000644744.1:ENST00000646633.1:ENST00000357116.4:ENST00000552044.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	2.68952	2.953105	3.21669	0.00206127	5.63284e-4	0.0505307	0.0178211
chr17	43288153	43288253	8938343	0	-	0.63	(0.629,1]	chr17	859071	580	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	99	2	2.76987	2.951345	3.13282	7.88547e-12	1e-12	1.23058e-9	1.73382e-10
chr5	795896	795994	3411620	0	-	0.5	(0.49,0.526]	chr5	313682	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZDHHC11	ENSG00000188818.13	ENST00000283441.13:ENST00000503758.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	18	2	2.92124	2.950745	2.98025	0.00137414	7.17059e-5	0.0360194	0.00310931
chr2	178562433	178562532	1224391	0	+	0.424242	(0.392,0.424]	chr2	128226	119	INTRON	INTRON	TTN-AS1	ENSG00000237298.10	ENST00000419746.5:ENST00000630096.2:ENST00000659121.1:ENST00000456053.5:ENST00000590773.6:ENST00000592600.6:ENST00000592630.5:ENST00000592750.5:ENST00000591332.5:ENST00000586707.6:ENST00000653807.1:ENST00000585451.5:ENST00000657023.1:ENST00000626117.2:ENST00000590807.5:ENST00000626954.2:ENST00000586452.5:ENST00000592689.5:ENST00000586831.5:ENST00000625480.2:ENST00000628826.2:ENST00000628296.2:ENST00000626138.2:ENST00000625536.2:ENST00000627564.2:ENST00000438095.1:ENST00000590932.5	lncRNA	lncRNA	lncRNA	lncRNA	9	18	2	2.63664	2.95071	3.26478	0.00277883	2.82806e-6	0.0657788	1.7804e-4
chr6	56618765	56618862	4092052	0	-	0.42268	(0.392,0.424]	chr6	372957	9	CDS	CDS:EXON_MRNA:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5:ENST00000370765.11:ENST00000522360.5	protein_coding	protein_coding	protein_coding	protein_coding	17	29	2	2.64203	2.948735	3.25544	3.69355e-6	4.75992e-7	2.26088e-4	3.56298e-5
chr2	191685668	191685768	1246920	0	+	0.42	(0.392,0.424]	chr2	130713	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000451500.5:ENST00000409510.5:ENST00000435931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	54	90	2	2.68621	2.9476	3.20899	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	204435597	204435694	842499	0	-	0.494845	(0.49,0.526]	chr1	93651	6	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000683234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	14	2	2.4732	2.94578	3.41836	0.00197937	0.00136895	0.0505186	0.0359623
chr5	360509	360609	3107799	0	+	0.51	(0.49,0.526]	chr5	287793	62	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10:ENST00000652417.2:ENST00000515206.6	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.31862	2.945575	3.57253	0.0101596	2.38382e-5	0.166645	0.00119556
chr1	8456678	8456778	508165	0	-	0.55	(0.526,0.57]	chr1	54851	180	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	2.93862	2.94502	2.95142	2.97995e-4	4.25861e-5	0.0105806	0.0019751
chr1	43423416	43423516	126503	0	+	0.58	(0.57,0.629]	chr1	15073	1	SS5_PROX	SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	2.54498	2.944015	3.34305	0.00846131	8.05796e-5	0.140721	0.00345544
chr1	155934139	155934235	779308	0	-	0.635417	(0.629,1]	chr1	86130	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1:ENST00000491599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	38	2	2.74504	2.9436799999999996	3.14232	5.51845e-6	4.91508e-6	3.2607e-4	2.89963e-4
chr2	3575609	3575684	927248	0	+	0.586667	(0.57,0.629]	chr2	101862	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000479123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	47	2	2.12911	2.9432650000000002	3.75742	1.07323e-5	1.63326e-10	5.77995e-4	2.13719e-8
chr14	22909538	22909595	7776081	0	-	0.403509	(0.392,0.424]	chr14	715569	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000307814.10:ENST00000557403.5:ENST00000555722.5:ENST00000553920.5:ENST00000557227.5:ENST00000555714.5:ENST00000554256.5:ENST00000556687.5:ENST00000553902.5:ENST00000554955.5:ENST00000556984.5:ENST00000557549.5:ENST00000555676.5:ENST00000557571.5:ENST00000556862.5:ENST00000557464.5:ENST00000554618.5:ENST00000556365.1:ENST00000553876.2:ENST00000555691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	30	2	2.81085	2.9428549999999998	3.07486	3.24e-6	2.01943e-7	1.99502e-4	1.63383e-5
chr4	56505862	56505962	2627614	0	+	0.46	(0.459,0.49]	chr4	252085	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	ARL9	ENSG00000196503.5	ENST00000360096.3:ENST00000640821.3:ENST00000645327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	17	2	2.47473	2.9422449999999998	3.40976	0.00637649	1.03329e-5	0.114061	5.57702e-4
chr1	225519394	225519479	868512	0	-	0.541176	(0.526,0.57]	chr1	96754	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ENAH	ENSG00000154380.19	ENST00000696609.1:ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000497899.6:ENST00000391874.2:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	124	315	2	2.83652	2.94178	3.04704	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	71293617	71293717	10156098	0	+	0.49	(0.459,0.49]	chrX	1012321	2	SS3_PROX	SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	12	2	2.66682	2.9417549999999997	3.21669	0.00873764	5.63284e-4	0.144342	0.0178211
chr6	111015804	111015856	3851968	0	+	0.384615	(0.36,0.392]	chr6	352810	2	CDS	CDS:UTR3:EXON_MRNA	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	11	2	2.89308	2.941535	2.98999	0.00845227	4.36075e-4	0.140721	0.014643
chr12	20394433	20394533	6842308	0	+	0.37	(0.36,0.392]	chr12	625044	238	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	39	2	2.83911	2.93884	3.03857	1.06666e-7	1.73808e-9	8.95036e-6	1.99179e-7
chr11	72002677	72002775	6437096	0	+	0.540816	(0.526,0.57]	chr11	581308	9	UTR3	UTR3:EXON_MRNA	IL18BP	ENSG00000137496.18	ENST00000497194.6:ENST00000393703.9:ENST00000620017.4:ENST00000343898.9:ENST00000534583.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	23	2	2.85481	2.9387499999999998	3.02269	1.37862e-4	2.35719e-5	0.00543389	0.00119414
chr1	154970096	154970196	773851	0	-	0.66	(0.629,1]	chr1	85052	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	SHC1	ENSG00000160691.19	ENST00000368450.5:ENST00000368453.8:ENST00000368449.8:ENST00000448116.7:ENST00000368445.9:ENST00000412170.5:ENST00000366442.2	protein_coding	protein_coding	protein_coding	protein_coding	102	436	2	2.90118	2.93852	2.97586	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	67066360	67066460	8013171	0	+	0.78	(0.629,1]	chr15	741013	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.71511	2.9374599999999997	3.15981	0.00203575	0.00188809	0.0513388	0.0466341
chr2	148645017	148645093	1169170	0	+	0.644737	(0.629,1]	chr2	123925	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.71511	2.9374599999999997	3.15981	0.00203575	0.00188809	0.0513388	0.0466341
chr17	56950811	56950903	8968605	0	-	0.358696	(0.32,0.36]	chr17	863330	11	CDS	CDS:EXON_MRNA	COIL	ENSG00000121058.5	ENST00000240316.5	protein_coding	protein_coding	protein_coding	protein_coding	15	25	2	2.23925	2.93741	3.63557	0.00313042	6.10852e-10	0.0699484	7.43233e-8
chr1	103528741	103528841	248192	0	+	0.37	(0.36,0.392]	chr1	25047	6	INTRON	INTRON	RNPC3	ENSG00000185946.16	ENST00000524631.5:ENST00000531883.5:ENST00000423855.7:ENST00000533099.5:ENST00000527062.5	protein_coding	protein_coding	protein_coding	protein_coding	6	11	2	2.85081	2.93688	3.02295	0.00352888	0.00109343	0.0751127	0.029258
chr19	52613209	52613306	9532775	0	-	0.391753	(0.36,0.392]	chr19	942482	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF83	ENSG00000167766.20	ENST00000600714.5:ENST00000601257.5:ENST00000301096.8:ENST00000536937.6:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000541777.6:ENST00000597161.6:ENST00000687234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	11	2	2.85081	2.93688	3.02295	0.00352888	0.00109343	0.0751127	0.029258
chr3	42637562	42637662	1849786	0	+	0.44	(0.424,0.459]	chr3	187248	8	CDS	CDS:UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	92	2	2.92382	2.936425	2.94903	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	71678991	71679090	7689127	0	+	0.444444	(0.424,0.459]	chr14	706655	60	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5	protein_coding	protein_coding	protein_coding	protein_coding	26	50	2	2.44174	2.935485	3.42923	4.68721e-7	1e-12	3.51208e-5	1.72912e-10
chr1	179229140	179229240	813458	0	-	0.77	(0.629,1]	chr1	90527	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.63461	2.934935	3.23526	0.0028169	0.00139352	0.0647686	0.037038
chr19	49809377	49809476	9525982	0	-	0.767677	(0.629,1]	chr19	941283	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FUZ	ENSG00000010361.14	ENST00000313777.9:ENST00000525130.5:ENST00000533418.5:ENST00000528094.5:ENST00000525370.5:ENST00000377092.8:ENST00000527973.1:ENST00000528043.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.63461	2.934935	3.23526	0.0028169	0.00139352	0.0647686	0.037038
chr21	16606993	16607092	9790985	0	+	0.555556	(0.526,0.57]	chr21	970702	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000656642.2:ENST00000660908.1:ENST00000667804.1:ENST00000400178.7:ENST00000456342.6:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000428669.7:ENST00000665282.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000663933.1:ENST00000670290.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1:ENST00000654245.1:ENST00000665504.1:ENST00000441820.5:ENST00000602659.2:ENST00000661939.1:ENST00000602323.1:ENST00000655790.1:ENST00000660035.1:ENST00000667777.1	lncRNA	lncRNA	lncRNA	lncRNA	35	90	2	2.83994	2.9342949999999997	3.02865	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	126021219	126021280	3872735	0	+	0.42623	(0.424,0.459]	chr6	354210	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRMT11	ENSG00000066651.20	ENST00000479748.5:ENST00000368332.7:ENST00000648977.1:ENST00000334379.11:ENST00000466316.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	13	2	2.48643	2.93275	3.37907	0.00447569	2.98646e-4	0.0903474	0.0104901
chr9	32550773	32550870	5602732	0	-	0.731959	(0.629,1]	chr9	501516	1	CDS	CDS:EXON_MRNA:INTRON	TOPORS	ENSG00000197579.8	ENST00000360538.7:ENST00000379858.1	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.0245	2.9302	3.8359	0.00301834	1.86609e-5	0.0692526	9.4788e-4
chr15	49244358	49244458	7972788	0	+	0.32	[0,0.32]	chr15	737558	46	INTRON	INTRON	GALK2	ENSG00000156958.15	ENST00000559883.5:ENST00000327171.7:ENST00000396509.6:ENST00000559208.5:ENST00000560031.6:ENST00000560119.5:ENST00000544523.5:ENST00000560138.5:ENST00000559423.5:ENST00000559454.5:ENST00000561014.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	11	2	2.67572	2.93019	3.18466	0.00446905	6.2959e-4	0.0902927	0.0193151
chr6	170381193	170381293	3982184	0	+	0.41	(0.392,0.424]	chr6	361108	225	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	9	17	2	2.50222	2.9299	3.35758	0.00201399	1.10011e-5	0.0494938	5.91284e-4
chr2	36536553	36536652	991186	0	+	0.474747	(0.459,0.49]	chr2	107886	72	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	2.13538	2.92675	3.71812	0.0128493	1.07121e-5	0.195714	5.77005e-4
chr4	109142343	109142443	2991545	0	-	0.41	(0.392,0.424]	chr4	280109	918	INTRON	INTRON	COL25A1	ENSG00000188517.17	ENST00000642955.1:ENST00000399132.6:ENST00000494183.5:ENST00000399126.1:ENST00000399127.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	19	2	2.66513	2.926585	3.18804	3.14916e-4	3.3457e-5	0.0110581	0.00159406
chr1	227096691	227096791	874979	0	-	0.46	(0.459,0.49]	chr1	97517	43	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000442054.5:ENST00000366764.8	protein_coding	protein_coding	protein_coding	protein_coding	10	25	2	2.71099	2.9250999999999996	3.13921	1.2697e-4	2.1937e-6	0.00503988	1.42091e-4
chr7	32564741	32564841	4353739	0	+	0.55	(0.526,0.57]	chr7	393214	49	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	5	14	2	2.36841	2.92462	3.48083	0.00295916	0.00110295	0.0677262	0.0304129
chr15	82418235	82418335	8061149	0	+	0.51	(0.49,0.526]	chr15	744985	2	SS3_PROX	SS3_PROX:INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000613592.4:ENST00000558542.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	18	2	2.71913	2.92297	3.12681	0.00122099	8.09548e-5	0.0323167	0.00346783
chr1	23054973	23055068	74729	0	+	0.305263	[0,0.32]	chr1	7403	13	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	12	2	2.58115	2.92288	3.26461	0.00263617	4.77035e-4	0.0633023	0.0156573
chr17	43288853	43288953	8938350	0	-	0.53	(0.526,0.57]	chr17	859071	587	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	16	43	2	2.8621	2.92173	2.98136	1.8954e-7	1.65519e-8	1.52747e-5	1.61256e-6
chr17	30134026	30134126	8689030	0	+	0.38	(0.36,0.392]	chr17	822554	59	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000583301.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	14	2	2.76763	2.921175	3.07472	0.00445622	5.567e-5	0.0875511	0.00252666
chr15	66504029	66504115	8220902	0	-	0.476744	(0.459,0.49]	chr15	762850	1	INTRON	INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	27	2	2.69035	2.920465	3.15058	5.86109e-5	1.24063e-6	0.00262682	8.47213e-5
chr21	39348991	39349065	9882475	0	-	0.702703	(0.629,1]	chr21	980058	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000380747.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5:ENST00000479586.5:ENST00000482733.1:ENST00000463631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	2.7879	2.919555	3.05121	0.00356029	1.43917e-4	0.0753972	0.00564049
chrX	47836954	47837007	10124279	0	+	0.660377	(0.629,1]	chrX	1009661	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF81	ENSG00000197779.15	ENST00000338637.13:ENST00000376954.6:ENST00000334937.8:ENST00000376950.4	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.86171	2.918905	2.9761	0.00463564	8.48224e-4	0.089408	0.0240064
chr17	40087001	40087089	8713385	0	+	0.488636	(0.459,0.49]	chr17	826272	1	SS5_PROX	SS5_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	8	20	2	2.42801	2.918885	3.40976	0.00112497	1.03329e-5	0.030064	5.57702e-4
chr9	34179340	34179440	5369937	0	+	0.65	(0.629,1]	chr9	479448	1	SS5_PROX	SS5_PROX:INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.53448	2.9185499999999998	3.30262	1.96287e-4	1.02829e-6	0.00726075	7.21054e-5
chr15	69455169	69455228	8024518	0	+	0.627119	(0.57,0.629]	chr15	741823	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	37	2	2.23656	2.918455	3.60035	1.15101e-4	5.07033e-9	0.0046905	5.39542e-7
chr17	40087353	40087450	8713389	0	+	0.505155	(0.49,0.526]	chr17	826273	1	INTRON	INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5	protein_coding	protein_coding	protein_coding	protein_coding	12	31	2	2.48092	2.918455	3.35599	2.9969e-5	4.23918e-7	0.00144822	3.18839e-5
chr6	152098798	152098866	3939219	0	+	0.676471	(0.629,1]	chr6	358221	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ESR1	ENSG00000091831.25	ENST00000440973.5:ENST00000338799.9:ENST00000443427.5:ENST00000406599.5:ENST00000456483.3:ENST00000206249.8:ENST00000427531.6:ENST00000641399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	118	2	2.86125	2.918365	2.97548	2.28795e-12	1e-12	3.80538e-10	1.72912e-10
chr15	74638193	74638291	8236472	0	-	0.44898	(0.424,0.459]	chr15	764676	22	INTRON	INTRON	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000562174.5:ENST00000566219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	41	2	2.42032	2.91817	3.41602	2.58917e-6	1.17901e-10	1.62158e-4	1.58522e-8
chr1	154183184	154183249	770464	0	-	0.6	(0.57,0.629]	chr1	84579	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000330188.13:ENST00000341485.10:ENST00000341372.8:ENST00000328159.9:ENST00000509409.5:ENST00000271850.11:ENST00000323144.12:ENST00000651641.1:ENST00000368530.7:ENST00000509601.1:ENST00000651644.1:ENST00000368527.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	18	2	2.8927	2.918165	2.94363	0.00107587	2.63329e-4	0.0288605	0.00943086
chr10	49477663	49477758	6127340	0	-	0.6	(0.57,0.629]	chr10	548908	10	INTRON	INTRON	ERCC6	ENSG00000225830.16	ENST00000681659.1:ENST00000681632.1:ENST00000355832.10:ENST00000623073.3:ENST00000623115.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	18	2	2.58024	2.9179399999999998	3.25564	0.00210589	1.26225e-4	0.0530328	0.00501499
chr9	127790407	127790503	5499405	0	+	0.604167	(0.57,0.629]	chr9	491746	10	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	2.54498	2.91723	3.28948	0.00846131	0.00212278	0.140721	0.0532704
chr2	27241910	27241981	960943	0	+	0.577465	(0.57,0.629]	chr2	105069	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000456311.1:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.80339	2.91699	3.03059	7.55212e-4	4.05948e-4	0.0225125	0.0135248
chr11	122231453	122231553	6764532	0	-	0.57	(0.526,0.57]	chr11	617593	272	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5	lncRNA	lncRNA	lncRNA	lncRNA	8	23	2	2.89374	2.9161799999999998	2.93862	8.33799e-5	4.25861e-5	0.00355751	0.0019751
chr19	2128589	2128689	9405663	0	-	0.79	(0.629,1]	chr19	919651	1	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.781	2.916105	3.05121	0.00356029	0.00122107	0.0753972	0.0323167
chr14	59461553	59461652	7840976	0	-	0.373737	(0.36,0.392]	chr14	722181	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GPR135:L3HYPDH	ENSG00000181619.12:ENSG00000126790.12	ENST00000481661.1:ENST00000466522.1:ENST00000395116.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	19	2	1.82723	2.915365	4.0035	0.0107132	1.21509e-7	0.174915	1.01303e-5
chr17	43094153	43094250	8936818	0	-	0.350515	(0.32,0.36]	chr17	858906	29	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9:ENST00000468300.5:ENST00000586385.5:ENST00000591534.5:ENST00000591849.5:ENST00000493795.5:ENST00000491747.6:ENST00000461221.5:ENST00000478531.5:ENST00000484087.5:ENST00000493919.5:ENST00000487825.5:ENST00000354071.7:ENST00000634433.1:ENST00000412061.3:ENST00000470026.5:ENST00000652672.1:ENST00000477152.5:ENST00000494123.5:ENST00000492859.5:ENST00000497488.1:ENST00000473961.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	17	25	2	2.72619	2.91481	3.10343	3.13272e-5	5.44059e-7	0.00151045	4.02101e-5
chr1	156265780	156265880	780653	0	-	0.59	(0.57,0.629]	chr1	86522	1	CDS	CDS:EXON_MRNA	SMG5	ENSG00000198952.8	ENST00000361813.5	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	2.098	2.91382	3.72964	0.00107583	1.49677e-6	0.0299939	1.01308e-4
chr5	177466986	177467062	3671055	0	-	0.605263	(0.57,0.629]	chr5	334015	2	CDS	CDS:EXON_MRNA	DBN1	ENSG00000113758.14	ENST00000309007.9:ENST00000393565.6:ENST00000292385.9:ENST00000472831.5:ENST00000477391.6:ENST00000471767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	83	244	2	2.81202	2.911355	3.01069	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	15490392	15490491	8880082	0	-	0.474747	(0.459,0.49]	chr17	849615	148	INTRON	INTRON	CDRT4	ENSG00000239704.11	ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding	12	29	2	2.85096	2.9109550000000004	2.97095	1.61211e-4	1.05785e-7	0.00615251	8.97695e-6
chr10	121498494	121498549	6274223	0	-	0.4	(0.392,0.424]	chr10	561503	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	56	2	2.84002	2.910225	2.98043	4.90602e-11	2.69228e-11	6.89472e-9	3.91566e-9
chr3	125331157	125331238	2418969	0	-	0.493827	(0.49,0.526]	chr3	231870	1	UTR5	UTR5:EXON_MRNA:INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	1.96736	2.908755	3.85015	0.00751979	9.88149e-7	0.132729	6.99627e-5
chr2	210651237	210651337	1296879	0	+	0.46	(0.459,0.49]	chr2	134221	4	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	71	2	2.63165	2.9085400000000003	3.18543	5.8662e-11	1e-12	8.16469e-9	1.73382e-10
chr16	14833785	14833851	8330582	0	+	0.787879	(0.629,1]	chr16	775793	2	UTR5	UTR5:EXON_MRNA	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.76554	2.9083750000000004	3.05121	0.0112307	0.00356029	0.181488	0.0753972
chr16	16318450	16318550	8339190	0	+	0.66	(0.629,1]	chr16	776961	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000540039.5:ENST00000536260.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	13	2	2.84021	2.908155	2.9761	0.00897489	0.00463564	0.155806	0.089408
chr13	21377337	21377429	7462491	0	-	0.630435	(0.629,1]	chr13	687460	3	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000626464.2:ENST00000464055.5:ENST00000320220.13:ENST00000477811.5:ENST00000494731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	32	2	2.05149	2.9079699999999997	3.76445	0.0022067	2.10389e-7	0.053911	1.67576e-5
chr18	254272	254355	9163180	0	-	0.409639	(0.392,0.424]	chr18	882997	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000631280.2:ENST00000582313.5:ENST00000581269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	73	118	2	2.89949	2.9072750000000003	2.91506	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	109075947	109076012	720779	0	-	0.646154	(0.629,1]	chr1	77016	1	UTR5	UTR5:EXON_MRNA	TAF13	ENSG00000197780.11	ENST00000461096.7:ENST00000338366.6:ENST00000692048.1	protein_coding	protein_coding	protein_coding	protein_coding	34	140	2	2.42149	2.906855	3.39222	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	59072592	59072692	3472952	0	-	0.36	(0.32,0.36]	chr5	319172	332	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	44	62	2	2.56373	2.90647	3.24921	4.12632e-9	1e-12	4.45524e-7	1.72912e-10
chr17	46528768	46528859	8950681	0	-	0.505495	(0.49,0.526]	chr17	860971	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ARL17A	ENSG00000185829.18	ENST00000445552.6:ENST00000622488.6:ENST00000329240.10	protein_coding	protein_coding	protein_coding	protein_coding	8	22	2	2.64626	2.906415	3.16657	1.79577e-4	4.17868e-5	0.0069054	0.00194135
chr1	93271014	93271114	235039	0	+	0.3	[0,0.32]	chr1	23607	2	SS5_PROX	SS5_PROX:INTRON	CCDC18	ENSG00000122483.18	ENST00000343253.11:ENST00000401026.7:ENST00000690592.1:ENST00000370276.6:ENST00000690025.1:ENST00000688770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	12	2	2.32511	2.90367	3.48223	0.00978561	9.66779e-5	0.160953	0.00402002
chr17	40086927	40087001	8713384	0	+	0.445946	(0.424,0.459]	chr17	826271	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7:ENST00000546243.5:ENST00000577637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	17	2	2.70259	2.903545	3.1045	0.00129645	4.34131e-5	0.0346786	0.00200039
chrX	71424016	71424031	10156880	0	+	0.2	[0,0.32]	chrX	1012557	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5:ENST00000468167.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	16	2	2.65227	2.90333	3.15439	9.28687e-4	3.74707e-5	0.0261843	0.00177006
chr1	108571365	108571465	248969	0	+	0.4	(0.392,0.424]	chr1	25194	104	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	11	20	2	2.54178	2.90328	3.26478	8.19729e-4	2.82806e-6	0.0238903	1.7804e-4
chr15	85415389	85415470	8070295	0	+	0.432099	(0.424,0.459]	chr15	746001	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	AKAP13:FABP5P9	ENSG00000170776.22:ENSG00000259630.2	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1:ENST00000559487.2	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:transcribed_processed_pseudogene	4	9	2	2.56804	2.90304	3.23804	0.00769936	0.00649971	0.135524	0.114061
chr16	77191221	77191258	8435216	0	+	0.432432	(0.424,0.459]	chr16	790526	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MON1B	ENSG00000103111.15	ENST00000569610.5:ENST00000567291.5:ENST00000563612.1:ENST00000563279.5:ENST00000566963.1:ENST00000564006.5:ENST00000248248.8:ENST00000439557.6:ENST00000545553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	9	2	2.56804	2.90304	3.23804	0.00769936	0.00649971	0.135524	0.114061
chr12	123743784	123743859	7042711	0	+	0.493333	(0.49,0.526]	chr12	646204	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000504192.2:ENST00000674794.1:ENST00000545059.5:ENST00000536426.1:ENST00000675260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	20	2	2.88418	2.90271	2.92124	4.05006e-4	7.17059e-5	0.0135138	0.00310931
chr17	4852419	4852519	8634697	0	+	0.58	(0.57,0.629]	chr17	815446	184	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	12	2	2.84467	2.900995	2.95732	0.00848479	0.00224807	0.140721	0.0552099
chr16	87700241	87700341	8618397	0	-	0.51	(0.49,0.526]	chr16	812817	22	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000446344.3:ENST00000567298.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	54	130	2	2.53249	2.899525	3.26656	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	49103490	49103587	9373300	0	+	0.762887	(0.629,1]	chr19	912718	15	UTR3	UTR3:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.57158	2.898825	3.22607	7.34532e-4	2.53563e-6	0.0220209	1.59207e-4
chr2	61178790	61178885	1044928	0	+	0.452632	(0.424,0.459]	chr2	111685	12	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHSA2P	ENSG00000173209.23	ENST00000357022.6:ENST00000463681.1:ENST00000394457.7:ENST00000489653.6:ENST00000642732.1:ENST00000643913.1:ENST00000647519.1:ENST00000642505.1:ENST00000471542.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	15	28	2	2.29682	2.89797	3.49912	1.83123e-4	4.4396e-8	0.00696867	4.04882e-6
chr17	29080025	29080122	8901319	0	-	0.71134	(0.629,1]	chr17	852959	3	CDS	CDS:EXON_MRNA:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000636100.1:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	33	2	2.88029	2.89709	2.91389	5.22361e-4	1.02648e-6	0.0167376	7.20255e-5
chr7	75732359	75732459	4736702	0	-	0.5	(0.49,0.526]	chr7	425238	773	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	12	2	2.62651	2.896675	3.16684	0.00470616	0.00258005	0.0901733	0.0617778
chr16	56991126	56991222	8398005	0	+	0.479167	(0.459,0.49]	chr16	784970	1	INTRON	INTRON	NLRC5	ENSG00000140853.17	ENST00000539881.5:ENST00000262510.10:ENST00000688547.1:ENST00000538273.5:ENST00000543141.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	14	2	2.7486	2.89525	3.0419	0.00700666	1.95784e-4	0.12393	0.00725539
chr22	50396925	50397025	9976951	0	+	0.53	(0.526,0.57]	chr22	992685	24	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	4	12	2	2.30916	2.8949949999999998	3.48083	0.0104445	0.00110295	0.170894	0.0304129
chr12	11869605	11869696	6823007	0	+	0.582418	(0.57,0.629]	chr12	623846	3	CDS	CDS:EXON_MRNA	ETV6	ENSG00000139083.11	ENST00000396373.9	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.58024	2.89381	3.20738	0.00279229	0.00210589	0.064521	0.0530328
chr8	125313137	125313237	5087218	0	+	0.33	(0.32,0.36]	chr8	455136	1305	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	39	52	2	2.38883	2.8937049999999997	3.39858	5.37916e-8	1e-12	4.76716e-6	1.73382e-10
chr13	48428331	48428431	7376580	0	+	0.48	(0.459,0.49]	chr13	681714	465	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	13	31	2	2.71691	2.89259	3.06827	3.24467e-5	1.31799e-7	0.0015821	1.1016e-5
chr13	48427631	48427731	7376573	0	+	0.5	(0.49,0.526]	chr13	681714	458	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	15	39	2	2.79204	2.892035	2.99203	3.6584e-7	1.66279e-7	2.80606e-5	1.36401e-5
chr18	224923	224994	9162879	0	-	0.352113	(0.32,0.36]	chr18	882958	1	CDS	CDS:UTR3:EXON_MRNA	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000584470.5:ENST00000579891.5:ENST00000577552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	126	169	2	2.78062	2.891035	3.00145	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	70253570	70253665	8580095	0	-	0.610526	(0.57,0.629]	chr16	809241	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	18	2	2.84467	2.89097	2.93727	0.00224807	1.46034e-4	0.0552099	0.00564049
chr10	45751381	45751481	5843427	0	+	0.41	(0.392,0.424]	chr10	525282	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4:ENST00000420848.3	protein_coding	protein_coding	protein_coding	protein_coding	33	54	2	2.75461	2.89048	3.02635	7.83277e-10	9.57323e-12	9.37346e-8	1.48175e-9
chr22	35271290	35271390	9936867	0	+	0.47	(0.459,0.49]	chr22	987288	53	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000418170.5:ENST00000216106.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	11	2	2.77363	2.890055	3.00648	0.0112903	0.00152008	0.181488	0.0397018
chr9	21892743	21892843	5363717	0	+	0.44	(0.424,0.459]	chr9	478720	258	INTRON	INTRON	MTAP	ENSG00000099810.21	ENST00000580900.5:ENST00000577563.1	protein_coding	protein_coding	protein_coding	protein_coding	7	15	2	2.72297	2.8898900000000003	3.05681	0.00293552	9.66812e-5	0.0672936	0.00402002
chr1	44455255	44455355	133048	0	+	0.45	(0.424,0.459]	chr1	16218	355	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	7	15	2	2.38609	2.88944	3.39279	0.00610401	3.57614e-5	0.111745	0.00171705
chr16	14919336	14919428	8331329	0	+	0.728261	(0.629,1]	chr16	775988	2	EXON_PSEUDO	EXON_PSEUDO	PKD1P3	ENSG00000183458.14	ENST00000534164.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	4	21	2	2.86171	2.8878	2.91389	8.48224e-4	5.22361e-4	0.0240064	0.0167376
chr22	18577870	18577968	9983893	0	-	0.765306	(0.629,1]	chr22	993710	2	EXON_LNCRNA	EXON_LNCRNA	PI4KAP1	ENSG00000274602.5	ENST00000611748.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	21	2	2.86171	2.8878	2.91389	8.48224e-4	5.22361e-4	0.0240064	0.0167376
chr2	206309418	206309517	1286933	0	+	0.393939	(0.392,0.424]	chr2	133206	25	CDS	CDS:UTR3:EXON_MRNA	ZDBF2	ENSG00000204186.10	ENST00000374423.9:ENST00000649650.1:ENST00000649285.1:ENST00000649998.1:ENST00000648361.1:ENST00000611847.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	9	2	2.30301	2.887435	3.47186	0.0122095	0.00366403	0.186377	0.0766409
chr16	72105289	72105348	8430388	0	+	0.542373	(0.526,0.57]	chr16	790164	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000268482.8:ENST00000579387.5:ENST00000562774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	25	2	2.88104	2.88739	2.89374	8.33799e-5	1.31878e-5	0.00355751	7.08361e-4
chr1	1839189	1839238	495271	0	-	0.387755	(0.36,0.392]	chr1	53103	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	29	2	2.86437	2.8870899999999997	2.90981	2.20046e-6	6.2776e-7	1.43122e-4	4.54764e-5
chr1	31065688	31065785	558911	0	-	0.71134	(0.629,1]	chr1	62149	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000373741.8:ENST00000373742.6:ENST00000525948.5:ENST00000524516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	2.52204	2.88696	3.25188	2.64055e-4	3.84594e-5	0.00945161	0.0018139
chr10	100374367	100374462	5956847	0	+	0.463158	(0.459,0.49]	chr10	534483	10	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OLMALINC	ENSG00000235823.4	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000686136.1:ENST00000690014.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1:ENST00000454935.1:ENST00000654288.1:ENST00000669693.1:ENST00000664225.1:ENST00000664516.1	lncRNA	lncRNA	lncRNA	lncRNA	4	11	2	2.68952	2.88694	3.08436	0.00939464	0.00206127	0.161654	0.0505307
chr22	20734473	20734553	9991636	0	-	0.5375	(0.526,0.57]	chr22	995017	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5:ENST00000462210.1:ENST00000494113.1:ENST00000477368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	19	2	2.09268	2.886485	3.68029	0.00599097	7.86103e-6	0.10983	4.5317e-4
chr19	40685551	40685651	9498894	0	-	0.51	(0.49,0.526]	chr19	935853	11	EXON_MRNA	EXON_MRNA:INTRON	NUMBL	ENSG00000105245.9	ENST00000252891.8:ENST00000598779.5:ENST00000540131.5:ENST00000598773.5:ENST00000595741.5:ENST00000600636.5:ENST00000599594.1:ENST00000598759.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	10	2	2.60562	2.8862300000000003	3.16684	0.0102832	0.00470616	0.170122	0.0901733
chr9	132353248	132353348	5754844	0	-	0.5	(0.49,0.526]	chr9	516463	2	SS5_PROX	SS5_PROX:INTRON	SETX	ENSG00000107290.14	ENST00000224140.6	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	2.31862	2.885435	3.45225	0.0101596	1.94111e-7	0.166645	1.56274e-5
chr13	48979312	48979412	7378347	0	+	0.43	(0.424,0.459]	chr13	681783	20	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	15	2	2.38923	2.88415	3.37907	0.00152352	2.98646e-4	0.0397448	0.0104901
chr19	57543209	57543307	9544937	0	-	0.27551	[0,0.32]	chr19	944646	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF550	ENSG00000251369.9	ENST00000601415.5:ENST00000457177.5:ENST00000447310.5:ENST00000376230.7:ENST00000344222.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	10	2	2.40567	2.8840500000000002	3.36243	0.00789053	0.00121149	0.138672	0.0321344
chr8	85185102	85185202	5015695	0	+	0.39	(0.36,0.392]	chr8	449922	71	INTRON	INTRON	E2F5	ENSG00000133740.11	ENST00000416274.7:ENST00000418930.6:ENST00000256117.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	15	2	2.68866	2.88169	3.07472	0.00234853	5.567e-5	0.0566232	0.00252666
chr16	74318982	74319082	8598548	0	-	0.43	(0.424,0.459]	chr16	810400	57	INTRON	INTRON	ENSG00000259972	ENSG00000259972.3	ENST00000565313.1:ENST00000561921.1	lncRNA	lncRNA	lncRNA	lncRNA	20	41	2	2.33342	2.881325	3.42923	1.82515e-4	1e-12	0.00688171	1.72912e-10
chr13	21377520	21377611	7462493	0	-	0.604396	(0.57,0.629]	chr13	687460	5	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000626464.2:ENST00000464055.5:ENST00000320220.13:ENST00000477811.5:ENST00000494731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	42	2	2.75002	2.88118	3.01234	1.08027e-6	6.8822e-8	7.42289e-5	5.98222e-6
chr4	108620568	108620640	2707141	0	+	0.430556	(0.424,0.459]	chr4	257602	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	13	2	2.72297	2.88077	3.03857	0.00293552	5.63002e-4	0.0672936	0.0178211
chr17	36529288	36529386	8916204	0	-	0.479592	(0.459,0.49]	chr17	854863	7	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000621344.4:ENST00000620640.4:ENST00000616159.4:ENST00000622055.4:ENST00000616207.4:ENST00000613551.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	18	2	2.68952	2.8804	3.07128	0.00206127	3.09793e-5	0.0505307	0.0014948
chr17	18537898	18537998	8890019	0	-	0.32	[0,0.32]	chr17	851105	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM106A:CCDC144B	ENSG00000273018.7:ENSG00000154874.16	ENST00000425211.5:ENST00000608216.5:ENST00000608141.5:ENST00000609193.5:ENST00000609832.5:ENST00000446853.1:ENST00000618081.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	24	30	2	2.03714	2.87774	3.71834	3.46118e-4	2.67245e-10	0.0120773	3.37556e-8
chr19	53069268	53069368	9536563	0	-	0.46	(0.459,0.49]	chr19	942968	12	CDS	CDS:EXON_MRNA	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000601421.5:ENST00000599247.5	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	2.7486	2.8775399999999998	3.00648	0.0112903	0.00700666	0.181488	0.12393
chr11	35176574	35176644	6371018	0	+	0.457143	(0.424,0.459]	chr11	570904	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD44	ENSG00000026508.21	ENST00000526025.2:ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000528086.5:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000525211.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000526000.6:ENST00000279452.10:ENST00000527889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	11	2	2.11318	2.876795	3.64041	0.0111807	0.00115507	0.181488	0.0316008
chr2	203394772	203394846	1273990	0	+	0.5	(0.49,0.526]	chr2	132786	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000424558.5:ENST00000417864.5:ENST00000422511.6:ENST00000261016.11:ENST00000441061.5:ENST00000411547.5:ENST00000430574.5:ENST00000451591.6:ENST00000422719.5:ENST00000454023.1:ENST00000416396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	23	2	2.18013	2.8763300000000003	3.57253	3.91305e-4	2.38382e-5	0.0131575	0.00119556
chr20	494824	494924	9691244	0	-	0.46	(0.459,0.49]	chr20	958369	8	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000643602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	23	2	2.08544	2.87596	3.66648	0.00286318	3.84332e-7	0.0662445	2.9216e-5
chr16	67549299	67549386	8573939	0	-	0.448276	(0.424,0.459]	chr16	808079	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ENSG00000261386	ENSG00000261386.2	ENST00000605277.1:ENST00000565929.1	lncRNA	lncRNA	lncRNA	lncRNA	17	30	2	2.16577	2.875655	3.58554	1.87103e-4	1.14753e-8	0.00710833	1.15966e-6
chr20	17968610	17968702	9712756	0	-	0.717391	(0.629,1]	chr20	961177	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000474883.5:ENST00000469704.1:ENST00000606602.1:ENST00000606557.1:ENST00000481323.1:ENST00000486039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	2.63461	2.875605	3.1166	0.0028169	1.41787e-4	0.0647686	0.00568047
chr20	5157232	5157332	9560513	0	+	0.46	(0.459,0.49]	chr20	946761	281	INTRON	INTRON	CDS2	ENSG00000101290.14	ENST00000467923.5:ENST00000450570.1:ENST00000460006.6:ENST00000468817.5:ENST00000486875.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	9	2	2.66682	2.87559	3.08436	0.00939464	0.00873764	0.161654	0.144342
chr7	105319867	105319967	4799606	0	-	0.47	(0.459,0.49]	chr7	431095	129	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	9	2	2.66682	2.87559	3.08436	0.00939464	0.00873764	0.161654	0.144342
chr8	97828646	97828746	5036767	0	+	0.47	(0.459,0.49]	chr8	451879	31	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	3	9	2	2.66682	2.87559	3.08436	0.00939464	0.00873764	0.161654	0.144342
chr11	64775299	64775399	6623182	0	-	0.39	(0.36,0.392]	chr11	605157	14	INTRON	INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000633899.1:ENST00000413951.5:ENST00000432725.1:ENST00000482693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	41	2	2.56258	2.875175	3.18777	2.55269e-6	1.5505900000000002e-11	1.6166e-4	2.31002e-9
chr1	40366232	40366332	118898	0	+	0.47	(0.459,0.49]	chr1	13831	34	INTRON	INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6	protein_coding	protein_coding	protein_coding	protein_coding	46	100	2	2.85838	2.874385	2.89039	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	55317692	55317727	8177174	0	-	0.285714	[0,0.32]	chr15	758503	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:INTRON	RAB27A:PIGBOS1	ENSG00000069974.16:ENSG00000225973.4	ENST00000563262.5:ENST00000561545.1:ENST00000436697.3:ENST00000567948.1:ENST00000565225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	12	2	2.59553	2.87262	3.14971	0.00557929	2.32754e-4	0.105396	0.00843063
chr20	5950991	5951077	9562096	0	+	0.406977	(0.392,0.424]	chr20	946861	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCM8	ENSG00000125885.13	ENST00000610722.4:ENST00000378883.5:ENST00000378896.7:ENST00000378886.6:ENST00000265187.4	protein_coding	protein_coding	protein_coding	protein_coding	12	21	2	2.70836	2.8722149999999997	3.03607	2.31137e-4	7.07788e-6	0.00838054	4.08189e-4
chr7	24629444	24629543	4330847	0	+	0.363636	(0.36,0.392]	chr7	391595	49	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5:ENST00000426450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	9	2	2.85081	2.871945	2.89308	0.00845227	0.00352888	0.140721	0.0751127
chrX	119834591	119834686	10416362	0	-	0.368421	(0.36,0.392]	chrX	1033317	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UPF3B	ENSG00000125351.13	ENST00000636792.1:ENST00000276201.7:ENST00000345865.6	protein_coding	protein_coding	protein_coding	protein_coding	5	9	2	2.76763	2.8711200000000003	2.97461	0.00698532	0.00445622	0.123839	0.0875511
chr14	73109341	73109416	7697064	0	+	0.426667	(0.424,0.459]	chr14	707116	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1:ENST00000530978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	84	148	2	2.80791	2.87075	2.93359	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	20478194	20478294	6843146	0	+	0.41	(0.392,0.424]	chr12	625044	1076	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	35	2	2.688	2.870505	3.05301	3.44984e-6	6.05667e-9	2.12255e-4	6.37961e-7
chr4	139556137	139556227	3016271	0	-	0.777778	(0.629,1]	chr4	282284	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SETD7	ENSG00000145391.14	ENST00000506866.6:ENST00000274031.8:ENST00000404104.7:ENST00000406354.1:ENST00000608795.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	2.41782	2.87028	3.32274	7.60906e-4	5.91461e-4	0.0223166	0.0186777
chr16	16321218	16321312	8339223	0	+	0.606383	(0.57,0.629]	chr16	776978	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000183889	ENSG00000183889.12	ENST00000536260.5	protein_coding	processed_transcript	protein_coding	processed_transcript	4	15	2	2.54498	2.87012	3.19526	0.00846131	2.48707e-4	0.140721	0.0089842
chr2	182331898	182331998	1635540	0	-	0.43	(0.424,0.459]	chr2	168577	671	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	74	130	2	2.73087	2.8699149999999998	3.00896	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	73850525	73850625	10373718	0	-	0.54	(0.526,0.57]	chrX	1029968	132	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	9	25	2	2.40577	2.869345	3.33292	8.62466e-4	8.03526e-7	0.0248025	5.68401e-5
chr17	3009734	3009833	8631922	0	+	0.535354	(0.526,0.57]	chr17	814827	12	INTRON	INTRON	RAP1GAP2	ENSG00000132359.15	ENST00000637138.1:ENST00000540393.6:ENST00000254695.13:ENST00000366401.8:ENST00000542807.1:ENST00000575979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	15	2	2.2577	2.869265	3.48083	0.00230987	0.00110295	0.0562688	0.0304129
chr2	96254889	96254989	1513179	0	-	0.57	(0.526,0.57]	chr2	157177	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM127	ENSG00000135956.9	ENST00000258439.8:ENST00000432959.1:ENST00000435268.1	protein_coding	protein_coding	protein_coding	protein_coding	3	10	2	2.57946	2.868745	3.15803	0.0110174	0.00482649	0.179063	0.0920354
chr1	156138781	156138879	308442	0	+	0.673469	(0.629,1]	chr1	34007	4	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	79	2	2.63966	2.86816	3.09666	1.96235e-10	1.24912e-10	2.5411e-8	1.67873e-8
chr1	165897309	165897405	327209	0	+	0.5625	(0.526,0.57]	chr1	36758	6	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	32	2	2.72885	2.8676950000000003	3.00654	1.99162e-5	4.71375e-7	0.00101614	3.53108e-5
chr6	18235455	18235554	4016273	0	-	0.484848	(0.459,0.49]	chr6	363478	89	INTRON	INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	21	2	2.69035	2.8661250000000003	3.0419	1.95784e-4	5.86109e-5	0.00725539	0.00262682
chr15	50480880	50480980	7975819	0	+	0.45	(0.424,0.459]	chr15	737773	30	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9:ENST00000559329.5:ENST00000560730.5:ENST00000625664.2:ENST00000561330.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	5	11	2	2.56804	2.86566	3.16328	0.00769936	0.0011776	0.135524	0.0313499
chr16	21839068	21839140	8531319	0	-	0.444444	(0.424,0.459]	chr16	801631	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NPIPB4	ENSG00000185864.18	ENST00000415645.6:ENST00000682606.1:ENST00000165086.8:ENST00000545367.5:ENST00000542133.5:ENST00000543660.1:ENST00000541329.1:ENST00000614197.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	11	2	2.56804	2.86566	3.16328	0.00769936	0.0011776	0.135524	0.0313499
chr17	19323930	19324029	8670666	0	+	0.353535	(0.32,0.36]	chr17	820395	103	INTRON	INTRON	EPN2	ENSG00000072134.16	ENST00000314728.10:ENST00000347697.6:ENST00000395618.7:ENST00000580579.5:ENST00000395628.6:ENST00000575595.5:ENST00000494192.6:ENST00000395620.6:ENST00000395626.5:ENST00000571254.1:ENST00000572627.6:ENST00000585097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	12	2	2.07535	2.8652249999999997	3.6551	0.00955487	2.11023e-4	0.157305	0.00785
chr2	63934413	63934513	1469011	0	-	0.44	(0.424,0.459]	chr2	152227	4	SS3_PROX	SS3_PROX:INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	8	16	2	2.78449	2.86163	2.93877	8.23195e-4	2.25298e-4	0.0239037	0.00827964
chr2	182345595	182345695	1635677	0	-	0.48	(0.459,0.49]	chr2	168577	808	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	20	2	2.16118	2.861265	3.56135	0.00659564	1.37546e-6	0.117905	9.34366e-5
chr14	30622290	30622338	7578205	0	+	0.75	(0.629,1]	chr14	698552	1	UTR5	UTR5:EXON_MRNA	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000469043.2:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000557713.5:ENST00000677445.1:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	2.25329	2.86121	3.46913	0.00559835	3.04018e-4	0.104204	0.0105767
chr5	80429038	80429137	3231666	0	+	0.434343	(0.424,0.459]	chr5	298563	11	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	25	2	2.83967	2.86068	2.88169	4.00021e-5	4.23427e-6	0.00190136	2.52244e-4
chr20	59900743	59900818	9774631	0	-	0.4	(0.392,0.424]	chr20	968779	1	CDS	CDS:EXON_MRNA	SYCP2	ENSG00000196074.13	ENST00000371001.6:ENST00000357552.8:ENST00000446834.5:ENST00000461538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	36	2	2.40632	2.858975	3.31163	3.67029e-4	4.30878e-12	0.0124309	6.93258e-10
chr6	2305300	2305399	3685923	0	+	0.454545	(0.424,0.459]	chr6	335957	212	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	5	10	2	2.38609	2.858745	3.3314	0.00610401	0.00517898	0.111745	0.0992178
chr16	2663290	2663388	8494110	0	-	0.459184	(0.424,0.459]	chr16	795992	31	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	ERVK13-1	ENSG00000260565.8	ENST00000564340.2:ENST00000663379.1:ENST00000619862.1:ENST00000661984.1:ENST00000655820.1:ENST00000658381.1:ENST00000662175.1:ENST00000665388.1:ENST00000568395.2:ENST00000656684.1:ENST00000663519.1:ENST00000669589.1:ENST00000660569.1:ENST00000667008.1:ENST00000661380.1:ENST00000654702.1:ENST00000662929.1:ENST00000670385.1:ENST00000654949.1:ENST00000657531.1:ENST00000661849.1:ENST00000658483.1:ENST00000666404.1:ENST00000659184.1:ENST00000659274.1:ENST00000668411.1:ENST00000669151.1:ENST00000657811.1:ENST00000671507.1:ENST00000668680.1:ENST00000666266.1:ENST00000671475.1:ENST00000665778.1:ENST00000653956.1:ENST00000569465.1:ENST00000667109.1:ENST00000562807.6:ENST00000665678.1:ENST00000662943.1:ENST00000657292.1:ENST00000685469.1:ENST00000566343.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	34	2	2.55246	2.85869	3.16492	1.97542e-5	5.20182e-9	0.00100069	5.52804e-7
chr10	119038304	119038371	6271770	0	-	0.432836	(0.424,0.459]	chr10	561018	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	114	199	2	2.72806	2.856685	2.98531	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	100238021	100238091	6235664	0	-	0.414286	(0.392,0.424]	chr10	557709	1	CDS	CDS:UTR3:EXON_MRNA	CWF19L1	ENSG00000095485.18	ENST00000468709.5:ENST00000354105.10:ENST00000482452.5:ENST00000478047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	16	2	2.77414	2.8554500000000003	2.93676	9.93591e-4	1.09179e-4	0.0276375	0.00442392
chr1	24648023	24648094	76741	0	+	0.408451	(0.392,0.424]	chr1	7833	1	UTR3	UTR3:EXON_MRNA:INTRON	SRRM1	ENSG00000133226.18	ENST00000478890.5:ENST00000593639.5:ENST00000468822.5:ENST00000600523.5:ENST00000462710.5:ENST00000374389.8:ENST00000323848.14:ENST00000490543.5:ENST00000479034.5:ENST00000596378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	16	2	2.50222	2.8552400000000002	3.20826	0.00201399	4.60645e-5	0.0494938	0.00213067
chr3	125257826	125257926	2418225	0	-	0.42	(0.392,0.424]	chr3	231823	231	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000497929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	41	2	2.42657	2.855165	3.28376	2.27307e-5	3.56715e-12	0.00115461	5.78143e-10
chr10	97370454	97370507	6220897	0	-	0.54717	(0.526,0.57]	chr10	556469	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RRP12	ENSG00000052749.14	ENST00000536831.5:ENST00000370992.9:ENST00000479481.5:ENST00000414986.5:ENST00000315563.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	15	2	2.30916	2.853405	3.39765	0.0104445	9.51513e-5	0.170894	0.00399331
chr15	43469926	43469996	8147207	0	-	0.528571	(0.526,0.57]	chr15	754712	2	CDS	CDS:EXON_MRNA	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	15	2	2.83139	2.853005	2.87462	0.00350122	4.22914e-4	0.0746524	0.0140492
chr16	18376735	18376798	8522734	0	-	0.571429	(0.57,0.629]	chr16	800082	1	EXON_PSEUDO	EXON_PSEUDO	PKD1P5	ENSG00000254681.6	ENST00000532415.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	9	25	2	2.31584	2.8526800000000003	3.38952	1.78446e-4	4.23084e-5	0.00689669	0.00196405
chr6	151350287	151350386	3933223	0	+	0.515152	(0.49,0.526]	chr6	358025	17	CDS	CDS:EXON_MRNA	AKAP12	ENSG00000131016.17	ENST00000402676.7:ENST00000253332.5:ENST00000354675.10:ENST00000359755.5	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	2.44134	2.851975	3.26261	2.42694e-4	2.15554e-6	0.00885542	1.39732e-4
chr1	67430129	67430200	646172	0	-	0.676056	(0.629,1]	chr1	71820	3	CDS	CDS:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.47168	2.8503100000000003	3.22894	0.00639682	5.70876e-5	0.114061	0.00258625
chr19	2128889	2128989	9405666	0	-	0.83	(0.629,1]	chr19	919651	4	SS5_PROX	SS5_PROX:INTRON	AP3D1	ENSG00000065000.19	ENST00000643116.3:ENST00000345016.9:ENST00000644728.1:ENST00000643010.1:ENST00000590683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.55191	2.84984	3.14777	0.004809	9.25723e-5	0.0964485	0.00389429
chr21	25362183	25362283	9792421	0	+	0.58	(0.57,0.629]	chr21	970791	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL13AP7	ENSG00000213885.4	ENST00000425147.1:ENST00000672784.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	54	150	2	2.63274	2.848115	3.06349	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	154546055	154546155	10465071	0	-	0.6	(0.57,0.629]	chrX	1037692	1	CDS_START	CDS_START:CDS:EXON_MRNA	G6PD	ENSG00000160211.20	ENST00000696420.1:ENST00000696421.1:ENST00000393564.7:ENST00000439227.6:ENST00000696426.1:ENST00000393562.10:ENST00000696425.1:ENST00000696427.1:ENST00000696430.1:ENST00000696429.1:ENST00000696428.1:ENST00000369620.6:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5:ENST00000696431.1:ENST00000488434.1:ENST00000647501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	17	2	2.27328	2.846855	3.42043	0.00157746	9.02612e-4	0.0410987	0.0258498
chr1	220812427	220812527	436114	0	+	0.41	(0.392,0.424]	chr1	46942	2	SS5_PROX	SS5_PROX:INTRON	MTARC1	ENSG00000186205.14	ENST00000694918.1:ENST00000366910.10:ENST00000694919.1:ENST00000694922.1:ENST00000694923.1:ENST00000407981.6:ENST00000496110.1:ENST00000694924.1:ENST00000694926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	82	127	2	2.78346	2.846165	2.90887	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	4366247	4366347	2159252	0	-	0.47	(0.459,0.49]	chr3	211325	36	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5:ENST00000272902.10:ENST00000383843.9:ENST00000458465.6:ENST00000405420.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.47473	2.84571	3.21669	0.00637649	5.63284e-4	0.114061	0.0178211
chr14	50944403	50944483	7825490	0	-	0.8125	(0.629,1]	chr14	720796	1	UTR5	UTR5:EXON_MRNA	PYGL	ENSG00000100504.17	ENST00000532462.5:ENST00000216392.8:ENST00000544180.6:ENST00000530336.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	2.71511	2.845605	2.9761	0.00463564	0.00203575	0.089408	0.0513388
chr9	137045677	137045777	5769230	0	-	0.76	(0.629,1]	chr9	519123	4	SS5_PROX	SS5_PROX:INTRON	NPDC1	ENSG00000107281.10	ENST00000371601.5:ENST00000488145.1:ENST00000485589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	2.71511	2.845605	2.9761	0.00463564	0.00203575	0.089408	0.0513388
chrX	56748782	56748882	10138268	0	+	0.47	(0.459,0.49]	chrX	1011168	162	INTRON	INTRON	NBDY	ENSG00000204272.13	ENST00000637096.1:ENST00000374922.9:ENST00000423617.2:ENST00000451583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.68952	2.845535	3.00155	0.00206127	0.00201907	0.0510613	0.0505307
chr13	110893088	110893149	7566737	0	-	0.377049	(0.36,0.392]	chr13	696112	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	44	62	2	2.69639	2.843145	2.9899	1.53259e-11	1e-12	2.28984e-9	1.73382e-10
chr1	174404144	174404244	352485	0	+	0.36	(0.32,0.36]	chr1	38884	96	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	16	2	2.71717	2.8409050000000002	2.96464	9.10347e-4	6.73055e-5	0.0260463	0.00292244
chr6	3092353	3092453	3689014	0	+	0.72	(0.629,1]	chr6	336216	15	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000676758.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1:ENST00000679335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	32	2	2.71102	2.8397699999999997	2.96852	3.98595e-5	3.64155e-5	0.00187459	0.00174793
chr1	41023466	41023565	121984	0	+	0.59596	(0.57,0.629]	chr1	14342	47	INTRON	INTRON	SLFNL1-AS1	ENSG00000281207.1	ENST00000626479.1	lncRNA	lncRNA	lncRNA	lncRNA	17	49	2	2.65648	2.83927	3.02206	1.8575e-7	1.11027e-8	1.49891e-5	1.12314e-6
chr2	30450804	30450904	974511	0	+	0.31	[0,0.32]	chr2	106507	29	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	14	2	2.79853	2.839095	2.87966	6.68468e-4	4.89226e-4	0.0200896	0.0160179
chr1	229602828	229602919	880066	0	-	0.483516	(0.459,0.49]	chr1	98085	7	CDS	CDS:EXON_MRNA	TAF5L	ENSG00000135801.10	ENST00000258281.6:ENST00000366675.3	protein_coding	protein_coding	protein_coding	protein_coding	18	39	2	2.45868	2.83861	3.21854	2.79806e-6	1.17678e-8	1.76338e-4	1.18336e-6
chr2	241248002	241248059	1736641	0	-	0.421053	(0.392,0.424]	chr2	178584	1	CDS	CDS:EXON_MRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000452931.1:ENST00000460826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	18	2	2.55773	2.837205	3.11668	0.00357576	4.23381e-6	0.0781496	2.57151e-4
chrX	130750783	130750883	10431713	0	-	0.48	(0.459,0.49]	chrX	1034764	411	INTRON	INTRON	ENOX2	ENSG00000165675.19	ENST00000338144.8:ENST00000394363.6:ENST00000370935.5:ENST00000686943.1:ENST00000432489.5:ENST00000492263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	29	2	2.72609	2.8367750000000003	2.94746	1.30182e-5	3.33041e-6	0.00069975600000000005	2.04951e-4
chr15	77154999	77155099	8248831	0	-	0.46	(0.459,0.49]	chr15	765828	209	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	8	19	2	2.71099	2.8358999999999996	2.96081	4.52907e-4	1.2697e-4	0.0150584	0.00503988
chr17	82629628	82629728	9035150	0	-	0.5	(0.49,0.526]	chr17	873554	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	19	2	2.78678	2.83548	2.88418	4.05006e-4	2.22218e-4	0.0135138	0.00825054
chr15	76425177	76425277	8243004	0	-	0.43	(0.424,0.459]	chr15	765577	201	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	18	2	2.60189	2.835275	3.06866	0.00187347	1.70365e-5	0.0464423	8.74905e-4
chr13	48428231	48428331	7376579	0	+	0.5	(0.49,0.526]	chr13	681714	464	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	7	19	2	2.6912	2.83486	2.97852	3.55208e-4	2.62984e-4	0.0120456	0.00942832
chr7	154965993	154966087	4895126	0	-	0.478723	(0.459,0.49]	chr7	438369	4	INTRON	INTRON	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	11	2	2.66682	2.8341849999999997	3.00155	0.00873764	0.00201907	0.144342	0.0510613
chr2	75650660	75650758	1082105	0	+	0.479592	(0.459,0.49]	chr2	115424	31	INTRON	INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000476622.1	protein_coding	protein_coding	protein_coding	protein_coding	4	11	2	2.7486	2.83394	2.91928	0.00700666	0.00264065	0.12393	0.063308
chr12	6766705	6766750	6811909	0	+	0.622222	(0.57,0.629]	chr12	622003	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	56	2	2.21722	2.832415	3.44761	2.06381e-6	4.73421e-12	1.34439e-4	7.59052e-10
chr15	34437561	34437643	8126444	0	-	0.878049	(0.629,1]	chr15	751847	3	UTR5	UTR5:EXON_MRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5	protein_coding	protein_coding	protein_coding	protein_coding	344	1355	2	2.75291	2.832055	2.9112	1e-12	1e-12	1.73382e-10	1.72912e-10
chr18	244587	244683	9163078	0	-	0.354167	(0.32,0.36]	chr18	882972	4	EXON_MRNA	EXON_MRNA:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000579891.5:ENST00000577552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	32	2	2.6053	2.83164	3.05798	6.25679e-5	9.88743e-10	0.00277665	1.16545e-7
chr5	71497269	71497347	3207922	0	+	0.397436	(0.392,0.424]	chr5	296001	1	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	22	2	2.62808	2.8307700000000002	3.03346	3.36108e-4	2.54387e-6	0.0114696	1.59694e-4
chr15	28159306	28159405	8111034	0	-	0.424242	(0.392,0.424]	chr15	750305	61	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	22	2	2.51122	2.83057	3.14992	4.47573e-4	1.8547e-6	0.0150244	1.21588e-4
chr3	14172866	14172964	2181961	0	-	0.459184	(0.424,0.459]	chr3	213124	1	CDS	CDS:EXON_MRNA	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000511155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	38	2	2.68886	2.82797	2.96708	1.29377e-6	8.49901e-9	8.82692e-5	8.74884e-7
chr1	89869444	89869544	230933	0	+	0.37	(0.36,0.392]	chr1	23061	224	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	39	55	2	2.81224	2.82776	2.84328	2.7443e-10	1.41369e-11	3.45169e-8	2.13073e-9
chr7	107448526	107448626	4807218	0	-	0.43	(0.424,0.459]	chr7	431556	355	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	16	2	2.11318	2.82752	3.54186	0.0111807	8.68602e-6	0.181488	4.85339e-4
chr1	1309528	1309603	1835	0	+	0.626667	(0.57,0.629]	chr1	477	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PUSL1	ENSG00000169972.12	ENST00000379031.10:ENST00000470520.5:ENST00000463758.1:ENST00000467712.1:ENST00000493657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	19	2	2.45958	2.82742	3.19526	0.00105573	2.48707e-4	0.0283868	0.0089842
chr5	173317946	173318021	3666991	0	-	0.653333	(0.629,1]	chr5	333381	1	CDS	CDS:EXON_MRNA	STC2	ENSG00000113739.11	ENST00000265087.9	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.61923	2.827395	3.03556	2.20964e-4	1.16343e-4	0.00809923	0.00468971
chr22	40856440	40856540	10042871	0	-	0.55	(0.526,0.57]	chr22	1001328	1	CDS_START	CDS_START:CDS:EXON_MRNA	ST13	ENSG00000100380.15	ENST00000216218.8:ENST00000455824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	20	2	2.52322	2.8266	3.12998	0.00370126	8.44142e-6	0.0806443	4.72082e-4
chr19	4402639	4402700	9270100	0	+	0.786885	(0.629,1]	chr19	894211	1	UTR5	UTR5:EXON_MRNA	CHAF1A	ENSG00000167670.16	ENST00000301280.10	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.1836700000000002	2.8264	3.46913	0.00283208	3.04018e-4	0.0662445	0.0105767
chr19	55654528	55654624	9389066	0	+	0.614583	(0.57,0.629]	chr19	916397	5	UTR5	UTR5:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	1.92247	2.8260549999999998	3.72964	0.00202488	1.49677e-6	0.0511848	1.01308e-4
chr18	74978876	74978976	9152587	0	+	0.57	(0.526,0.57]	chr18	882083	578	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	6	17	2	2.75687	2.825305	2.89374	0.00442955	8.33799e-5	0.0875511	0.00355751
chr1	119177744	119177843	273958	0	+	0.414141	(0.392,0.424]	chr1	28333	161	INTRON	INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000440150.5:ENST00000670000.1:ENST00000418015.1:ENST00000413531.5:ENST00000685192.1	lncRNA	lncRNA	lncRNA	lncRNA	25	40	2	2.70362	2.824675	2.94573	6.09958e-7	1.55017e-9	4.42565e-5	1.77326e-7
chr1	101025343	101025443	714205	0	-	0.53	(0.526,0.57]	chr1	76458	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DPH5	ENSG00000117543.22	ENST00000370109.8:ENST00000370105.7:ENST00000427040.3:ENST00000690716.1:ENST00000488789.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1:ENST00000481982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	37	2	2.05683	2.824485	3.59214	4.51797e-5	2.16364e-8	0.00208083	2.09062e-6
chr20	38972558	38972651	9651320	0	+	0.376344	(0.36,0.392]	chr20	953126	1	CDS	CDS:EXON_MRNA:INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	34	2	2.05176	2.82447	3.59718	4.16734e-4	1.15369e-11	0.0138656	1.77036e-9
chr6	165893324	165893424	4269680	0	-	0.39	(0.36,0.392]	chr6	386913	195	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	95	131	2	2.35678	2.82435	3.29192	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	24420738	24420838	3743006	0	+	0.45	(0.424,0.459]	chr6	339084	16	INTRON	INTRON	MRS2	ENSG00000124532.15	ENST00000274747.11:ENST00000443868.6:ENST00000378386.8:ENST00000378353.5	protein_coding	protein_coding	protein_coding	protein_coding	6	12	2	2.38609	2.823625	3.26116	0.00610401	8.43922e-4	0.111745	0.0240064
chr6	30619546	30619601	3752597	0	+	0.418182	(0.392,0.424]	chr6	340739	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	18	2	2.18302	2.823545	3.46407	0.00136698	2.50033e-5	0.0364621	0.0012382
chr5	1326534	1326632	3413414	0	-	0.5	(0.49,0.526]	chr5	314091	2	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	53	2	2.42199	2.8230399999999998	3.22409	5.43714e-6	1e-12	3.20065e-4	1.72912e-10
chr16	56440445	56440544	8561689	0	-	0.363636	(0.36,0.392]	chr16	806016	3	INTRON	INTRON	NUDT21	ENSG00000167005.14	ENST00000300291.10:ENST00000566340.5:ENST00000568822.1	protein_coding	protein_coding	protein_coding	protein_coding	17	25	2	2.64478	2.8222899999999997	2.9998	2.89271e-5	2.16151e-6	0.00142258	1.40091e-4
chr5	10231428	10231527	3421345	0	-	0.616162	(0.57,0.629]	chr5	314738	34	INTRON	INTRON	ATPSCKMT	ENSG00000150756.14	ENST00000511437.6:ENST00000280330.12:ENST00000510047.5:ENST00000504390.5:ENST00000510052.5:ENST00000506108.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	27	2	2.70494	2.821105	2.93727	1.46034e-4	1.11457e-5	0.00564049	5.9896e-4
chr6	165831898	165831998	4269065	0	-	0.36	(0.32,0.36]	chr6	386909	28	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	41	2	2.61024	2.8204450000000003	3.03065	1.87976e-7	5.0879e-10	1.54429e-5	6.25374e-8
chr12	57104264	57104363	7179954	0	-	0.606061	(0.57,0.629]	chr12	662719	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000651176.1:ENST00000553533.2:ENST00000554764.6:ENST00000538913.6:ENST00000543873.6:ENST00000556155.5:ENST00000537215.6:ENST00000454075.7:ENST00000640254.2:ENST00000557781.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	39	2	2.60887	2.82004	3.03121	7.39885e-6	1.72849e-7	4.2522e-4	1.40174e-5
chr1	226165858	226165929	871251	0	-	0.464789	(0.459,0.49]	chr1	97106	1	CDS	CDS:EXON_MRNA	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	8	19	2	2.788	2.81948	2.85096	3.42937e-4	1.61211e-4	0.0119676	0.00615251
chr15	84792081	84792181	8067581	0	+	0.46	(0.459,0.49]	chr15	745741	8	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000559607.1:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	19	2	2.788	2.81948	2.85096	3.42937e-4	1.61211e-4	0.0119676	0.00615251
chr10	101038176	101038269	5959010	0	+	0.548387	(0.526,0.57]	chr10	534882	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SFXN3	ENSG00000107819.14	ENST00000393459.5:ENST00000466982.1:ENST00000470252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	18	2	2.40577	2.819095	3.23242	8.62466e-4	3.23436e-4	0.0248025	0.0113067
chrX	74249919	74250019	10376861	0	-	0.53	(0.526,0.57]	chrX	1030066	16	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1:ENST00000656041.1:ENST00000657327.1:ENST00000664343.1:ENST00000656977.1:ENST00000671343.1:ENST00000659407.1:ENST00000671067.1:ENST00000660829.1:ENST00000671385.1	lncRNA	lncRNA	lncRNA	lncRNA	7	18	2	2.40577	2.819095	3.23242	8.62466e-4	3.23436e-4	0.0248025	0.0113067
chr17	18908617	18908716	8669313	0	+	0.555556	(0.526,0.57]	chr17	820258	37	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000487101.5:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000422237.5:ENST00000542013.5:ENST00000574451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	47	2	2.69546	2.817695	2.93993	3.54386e-7	1.87969e-9	2.71961e-5	2.1436e-7
chr12	12875846	12875933	6826274	0	+	0.586207	(0.57,0.629]	chr12	624048	5	EXON_PSEUDO	EXON_PSEUDO	RPL13AP20	ENSG00000234498.3	ENST00000459725.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	24	68	2	2.79243	2.816815	2.8412	2.48444e-10	6.35331e-11	3.16219e-8	8.80838e-9
chr3	14170493	14170550	2181935	0	-	0.508772	(0.49,0.526]	chr3	213117	2	CDS	CDS:EXON_MRNA	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000452172.1:ENST00000511155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	76	176	2	2.53566	2.815555	3.09545	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	101395334	101395396	10185203	0	+	0.435484	(0.424,0.459]	chrX	1014274	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RPL36A	ENSG00000241343.10	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000553110.8:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1:ENST00000489407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	19	2	2.78956	2.814615	2.83967	5.51568e-4	4.00021e-5	0.0175042	0.00190136
chr1	52446589	52446667	618194	0	-	0.358974	(0.32,0.36]	chr1	68864	1	CDS	CDS:EXON_MRNA:INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000531722.5:ENST00000474453.6:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	30	2	2.57185	2.81434	3.05683	4.03323e-6	3.78655e-7	2.42936e-4	2.85223e-5
chr15	59190400	59190500	8193929	0	-	0.48	(0.459,0.49]	chr15	759773	18	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559269.5:ENST00000560749.1:ENST00000558182.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	13	2	2.66682	2.813815	2.96081	0.00873764	4.52907e-4	0.144342	0.0150584
chr1	45607689	45607782	136820	0	+	0.483871	(0.459,0.49]	chr1	16788	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	57	118	2	2.79231	2.81249	2.83267	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	168568881	168568981	3654599	0	-	0.39	(0.36,0.392]	chr5	332637	1	CDS_START	CDS_START:CDS:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	22	32	2	2.46143	2.81112	3.16081	2.93563e-5	5.82342e-9	0.00142224	6.17364e-7
chr3	149924421	149924521	2041349	0	+	0.42	(0.392,0.424]	chr3	204111	28	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000361785.10:ENST00000482083.7:ENST00000468289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	11	2	2.76656	2.809945	2.85333	0.0113141	7.37124e-4	0.181488	0.0223835
chr7	158694770	158694866	4911867	0	-	0.416667	(0.392,0.424]	chr7	438968	9	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000409339.3:ENST00000621338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	19	2	2.35343	2.8091049999999997	3.26478	0.00278175	2.82806e-6	0.0657948	1.7804e-4
chr6	111374180	111374279	4166369	0	-	0.323232	(0.32,0.36]	chr6	379378	17	CDS	CDS:UTR3:EXON_MRNA	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	33	2	2.78047	2.80886	2.83725	1.28431e-6	6.18366e-8	8.76439e-5	5.38958e-6
chr5	142913198	142913293	3345806	0	+	0.452632	(0.424,0.459]	chr5	307301	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000475287.2:ENST00000477867.6:ENST00000451259.1:ENST00000461314.5:ENST00000469131.6:ENST00000469396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	19	2	2.68269	2.808125	2.93356	3.61318e-4	6.28281e-5	0.0122472	0.00278285
chr12	59779500	59779579	6928974	0	+	0.455696	(0.424,0.459]	chr12	634151	2	CDS	CDS:UTR3:EXON_MRNA	SLC16A7	ENSG00000118596.12	ENST00000547379.6:ENST00000552432.5:ENST00000552024.5:ENST00000548610.5:ENST00000261187.8:ENST00000549033.5:ENST00000549928.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	14	2	2.72297	2.80676	2.89055	0.00293552	3.60142e-4	0.0672936	0.01248
chrX	15822894	15822977	10087828	0	+	0.554217	(0.526,0.57]	chrX	1006340	3	CDS	CDS:EXON_MRNA	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	67	2	2.4567	2.806505	3.15631	1.38216e-8	1e-12	1.37103e-6	1.73382e-10
chr1	156876485	156876572	311117	0	+	0.655172	(0.629,1]	chr1	34536	2	CDS	CDS:UTR3:EXON_MRNA	NTRK1	ENSG00000198400.13	ENST00000392302.7:ENST00000674537.1:ENST00000497019.7:ENST00000530298.5:ENST00000368196.7:ENST00000524377.7:ENST00000358660.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	140	2	2.74896	2.805715	2.86247	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	39539789	39539888	8711404	0	+	0.414141	(0.392,0.424]	chr17	825693	54	INTRON	INTRON	CDK12	ENSG00000167258.15	ENST00000559663.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	11	2	2.63838	2.8048650000000004	2.97135	0.00636373	0.00130048	0.114061	0.0347373
chrX	53573054	53573151	10346243	0	-	0.42268	(0.392,0.424]	chrX	1027657	29	INTRON	INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	4	8	2	2.76656	2.8046699999999998	2.84278	0.0113141	0.00949728	0.181488	0.16275
chr17	50707520	50707554	8964036	0	-	0.5	(0.49,0.526]	chr17	862723	1	CDS	CDS:EXON_MRNA	ANKRD40	ENSG00000154945.7	ENST00000285243.7:ENST00000507114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	19	2	2.0361	2.804315	3.57253	0.00431067	2.38382e-5	0.0868826	0.00119556
chr11	115231373	115231473	6746338	0	-	0.51	(0.49,0.526]	chr11	615700	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000612235.4:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000616271.4:ENST00000541434.5:ENST00000542450.5:ENST00000543540.5:ENST00000545094.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	14	2	2.62651	2.8033799999999998	2.98025	0.00258005	0.00137414	0.0617778	0.0360194
chr4	151099652	151099714	2758483	0	+	0.516129	(0.49,0.526]	chr4	261976	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	14	2	2.62651	2.8033799999999998	2.98025	0.00258005	0.00137414	0.0617778	0.0360194
chr1	193218353	193218453	388104	0	+	0.34	(0.32,0.36]	chr1	41731	55	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	13	2	2.71717	2.803045	2.88892	0.00121159	9.10347e-4	0.0326347	0.0260463
chr5	159100482	159100576	3378324	0	+	0.648936	(0.629,1]	chr5	310059	1	EXON_LNCRNA	EXON_LNCRNA	LINC02202	ENSG00000245812.4	ENST00000517335.2:ENST00000685661.1:ENST00000688550.1:ENST00000690318.1:ENST00000691644.1:ENST00000691810.1:ENST00000686525.1:ENST00000686634.1	lncRNA	lncRNA	lncRNA	lncRNA	2	12	2	2.76554	2.8028750000000002	2.84021	0.0112307	0.00897489	0.181488	0.155806
chr5	177133859	177133952	3399745	0	+	0.774194	(0.629,1]	chr5	312036	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NSD1	ENSG00000165671.22	ENST00000508896.6:ENST00000689549.1:ENST00000354179.9:ENST00000686993.1:ENST00000689326.1:ENST00000439151.7:ENST00000602285.1:ENST00000510954.6:ENST00000689345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	2.76554	2.8028750000000002	2.84021	0.0112307	0.00897489	0.181488	0.155806
chr1	66289879	66289979	191471	0	+	0.35	(0.32,0.36]	chr1	20570	225	INTRON	INTRON	PDE4B	ENSG00000184588.18	ENST00000329654.8:ENST00000341517.9:ENST00000423207.6:ENST00000412480.6	protein_coding	protein_coding	protein_coding	protein_coding	6	9	2	2.63272	2.802695	2.97267	0.00701727	0.00503554	0.122029	0.0976839
chr1	113018924	113019024	261991	0	+	0.33	(0.32,0.36]	chr1	27086	102	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5	lncRNA	lncRNA	lncRNA	lncRNA	6	9	2	2.63272	2.802695	2.97267	0.00701727	0.00503554	0.122029	0.0976839
chr15	24977777	24977846	7926995	0	+	0.550725	(0.526,0.57]	chr15	731590	1	CDS	CDS:UTR3:EXON_MRNA	SNRPN:SNURF	ENSG00000128739.23:ENSG00000273173.5	ENST00000400100.5:ENST00000642807.1:ENST00000645002.1:ENST00000400097.5:ENST00000346403.10:ENST00000554227.6:ENST00000390687.9:ENST00000579070.5:ENST00000580062.5:ENST00000577565.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	25	2	2.36841	2.8020199999999997	3.23563	0.00295916	2.47214e-7	0.0677262	1.94074e-5
chr19	5648620	5648698	9273396	0	+	0.384615	(0.36,0.392]	chr19	894612	2	SS3_PROX	SS3_PROX:INTRON	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000586934.5:ENST00000454510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	22	2	2.46434	2.8016	3.13886	5.70353e-5	2.09336e-5	0.0025857	0.00104621
chr1	63457133	63457228	640443	0	-	0.326316	(0.32,0.36]	chr1	71309	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	9	2	2.51516	2.801165	3.08717	0.0069482500000000004	0.00535148	0.121182	0.100211
chr14	70972182	70972281	7684036	0	+	0.59596	(0.57,0.629]	chr14	706317	18	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000554879.5:ENST00000304743.7:ENST00000439984.7:ENST00000553272.6:ENST00000553428.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	13	2	2.39432	2.80085	3.20738	0.00573141	0.00279229	0.106459	0.064521
chr8	90007274	90007374	5020207	0	+	0.45	(0.424,0.459]	chr8	450528	6	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	20	2	2.64209	2.79885	2.95561	1.5695e-4	8.52765e-5	0.00600355	0.00363217
chr12	51083128	51083228	7165123	0	-	0.7	(0.629,1]	chr12	659330	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSRNP2	ENSG00000110925.7	ENST00000228515.6:ENST00000548206.1:ENST00000548981.5:ENST00000546935.5:ENST00000552680.1:ENST00000550461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	31	2	2.781	2.797625	2.81425	0.00122107	2.38938e-6	0.0323167	1.5204e-4
chr11	108279490	108279549	6486620	0	+	0.457627	(0.424,0.459]	chr11	586389	1	CDS	CDS:EXON_MRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	24	2	2.68269	2.79603	2.90937	3.61318e-4	1.31823e-6	0.0122472	8.96115e-5
chr3	136928101	136928164	2013328	0	+	0.396825	(0.392,0.424]	chr3	202179	1	CDS	CDS:EXON_MRNA	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5:ENST00000496489.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	33	2	2.42657	2.79596	3.16535	2.27307e-5	9.22951e-9	0.00115461	9.48448e-7
chr5	71522288	71522355	3208186	0	+	0.358209	(0.32,0.36]	chr5	296061	1	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	62	78	2	2.51477	2.7952950000000003	3.07582	1.18705e-12	1e-12	2.04151e-10	1.72912e-10
chr1	246273920	246274020	916195	0	-	0.29	[0,0.32]	chr1	100961	803	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	15	2	2.66204	2.79439	2.92674	0.00202535	8.106e-5	0.0511848	0.00345286
chr16	18347353	18347448	8522645	0	-	0.610526	(0.57,0.629]	chr16	800033	2	EXON_PSEUDO	EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	11	2	2.6312	2.7942600000000004	2.95732	0.00848479	0.00652833	0.140721	0.116779
chrX	23783657	23783709	10104073	0	+	0.326923	(0.32,0.36]	chrX	1007322	1	CDS	CDS:EXON_MRNA	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000379253.7:ENST00000379251.7:ENST00000489394.5:ENST00000487713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	23	2	2.46983	2.79425	3.11867	2.20078e-4	9.41771e-7	0.00808661	6.62408e-5
chr11	19717359	19717459	6341391	0	+	0.53	(0.526,0.57]	chr11	568839	30	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7	protein_coding	protein_coding	protein_coding	protein_coding	4	12	2	2.75687	2.79413	2.83139	0.00442955	0.00350122	0.0875511	0.0746524
chr5	38538546	38538646	3444632	0	-	0.52	(0.49,0.526]	chr5	317107	75	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8:ENST00000503088.1:ENST00000506990.5:ENST00000511561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	21	2	2.63849	2.7934200000000002	2.94835	6.72549e-4	4.02106e-5	0.020502	0.00187925
chr10	79736672	79736772	6181170	0	-	0.52	(0.49,0.526]	chr10	553550	123	INTRON	INTRON	NUTM2B-AS1	ENSG00000225484.7	ENST00000671459.1:ENST00000596088.5:ENST00000600376.5:ENST00000601369.6:ENST00000662025.1:ENST00000670682.1:ENST00000619625.4:ENST00000658528.1	lncRNA	lncRNA	lncRNA	lncRNA	4	12	2	2.60562	2.792935	2.98025	0.0102832	0.00137414	0.170122	0.0360194
chr15	28163882	28163979	8111080	0	-	0.608247	(0.57,0.629]	chr15	750311	2	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000650509.1:ENST00000569772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	11	2	2.54498	2.7919099999999997	3.03884	0.00846131	0.00676458	0.140721	0.1204
chr1	220589304	220589404	434587	0	+	0.39	(0.36,0.392]	chr1	46719	78	INTRON	INTRON	MARK1	ENSG00000116141.17	ENST00000366917.6:ENST00000402574.5:ENST00000611084.4:ENST00000366918.8:ENST00000677505.1:ENST00000677041.1:ENST00000678353.1:ENST00000677173.1:ENST00000678922.1:ENST00000676500.1:ENST00000679033.1:ENST00000678435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	18	2	2.32235	2.791515	3.26068	7.36883e-4	3.54851e-5	0.0223835	0.00167759
chr14	64522477	64522575	7654468	0	+	0.306122	[0,0.32]	chr14	704818	10	CDS	CDS:EXON_MRNA	ZBTB1	ENSG00000126804.14	ENST00000554015.5:ENST00000358738.3:ENST00000683701.1	protein_coding	protein_coding	protein_coding	protein_coding	18	23	2	2.77036	2.791125	2.81189	2.42348e-5	1.02163e-5	0.00120982	5.69473e-4
chr6	111374775	111374874	4166375	0	-	0.353535	(0.32,0.36]	chr6	379378	23	CDS	CDS:UTR3:EXON_MRNA	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	33	2	2.45688	2.7900799999999997	3.12328	1.53788e-5	3.707e-9	8.08287e-4	4.03186e-7
chr10	113044723	113044823	5984583	0	+	0.52	(0.49,0.526]	chr10	537575	42	INTRON	INTRON	TCF7L2	ENSG00000148737.17	ENST00000355995.9:ENST00000627217.3:ENST00000534894.5:ENST00000536810.5:ENST00000538897.5:ENST00000542695.5:ENST00000543371.5:ENST00000369397.8:ENST00000355717.9:ENST00000352065.10:ENST00000369395.6:ENST00000545257.6:ENST00000629706.2:ENST00000346198.5	protein_coding	protein_coding	protein_coding	protein_coding	5	14	2	2.76614	2.789685	2.81323	0.00430264	8.35112e-4	0.0867442	0.0240064
chr2	148178699	148178793	1165748	0	+	0.351064	(0.32,0.36]	chr2	123788	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3:ENST00000627651.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	36	2	2.5329	2.78939	3.04588	6.44476e-7	1.53467e-8	4.68537e-5	1.5181e-6
chr10	121498394	121498494	6274222	0	-	0.47	(0.459,0.49]	chr10	561502	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	41	2	2.5689	2.78873	3.00856	4.96862e-6	2.01275e-9	2.93005e-4	2.26462e-7
chr12	70534230	70534330	6952470	0	+	0.5	(0.49,0.526]	chr12	636664	61	INTRON	INTRON	ENSG00000258168	ENSG00000258168.6	ENST00000549460.5:ENST00000667427.1:ENST00000548687.5:ENST00000667308.1:ENST00000551438.5:ENST00000547656.1:ENST00000546836.1	lncRNA	lncRNA	lncRNA	lncRNA	5	14	2	2.71913	2.78842	2.85771	0.00321931	0.00122099	0.0703477	0.0323167
chr19	47409098	47409172	9518526	0	-	0.567568	(0.526,0.57]	chr19	939398	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MEIS3	ENSG00000105419.18	ENST00000558555.6:ENST00000331559.9:ENST00000441740.6:ENST00000561204.5:ENST00000561096.5:ENST00000560245.5:ENST00000561293.5:ENST00000560253.1:ENST00000559524.5:ENST00000607695.1:ENST00000559338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	31	2	2.61857	2.787885	2.9572	2.07935e-4	1.51122e-7	0.00775513	1.24944e-5
chr12	113369115	113369209	7028649	0	+	0.617021	(0.57,0.629]	chr12	643588	1	CDS	CDS:EXON_MRNA:INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	14	2	2.6312	2.787415	2.94363	0.00652833	0.00107587	0.116779	0.0288605
chr15	40296577	40296634	8135741	0	-	0.631579	(0.629,1]	chr15	752612	2	CDS	CDS:EXON_MRNA	PLCB2	ENSG00000137841.12	ENST00000260402.8:ENST00000557821.5:ENST00000558588.5:ENST00000456256.6:ENST00000558409.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	88	2	2.67333	2.785915	2.8985	8.86144e-11	8.2796e-12	1.20216e-8	1.28066e-9
chr2	241054224	241054323	1361575	0	+	0.373737	(0.36,0.392]	chr2	140545	5	INTRON	INTRON	SNED1	ENSG00000162804.14	ENST00000310397.13:ENST00000405547.7:ENST00000401884.5	protein_coding	protein_coding	protein_coding	protein_coding	27	34	2	2.37832	2.785345	3.19237	5.15126e-7	4.38715e-7	3.80362e-5	3.29138e-5
chr8	99012768	99012868	5230015	0	-	0.53	(0.526,0.57]	chr8	467818	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VPS13B-DT	ENSG00000253948.3	ENST00000686056.1:ENST00000664437.1:ENST00000661471.1:ENST00000653552.1:ENST00000663007.1:ENST00000664472.2:ENST00000521696.1:ENST00000689048.1	lncRNA	lncRNA	lncRNA	lncRNA	5	14	2	2.59957	2.7852550000000003	2.97094	0.00283719	0.0014221	0.0662445	0.0370226
chr6	99401431	99401530	4138123	0	-	0.323232	(0.32,0.36]	chr6	377163	9	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000460600.1:ENST00000478777.5:ENST00000476159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	59	72	2	2.52121	2.7838950000000002	3.04658	1.63558e-12	1e-12	2.74121e-10	1.73382e-10
chr2	190659807	190659901	1243773	0	+	0.37234	(0.36,0.392]	chr2	130322	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAB1	ENSG00000138386.17	ENST00000409581.5:ENST00000337386.10:ENST00000409641.5:ENST00000434473.1:ENST00000484774.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	22	2	2.05549	2.7837199999999998	3.51195	0.00188341	2.72313e-7	0.0481459	2.13145e-5
chr16	28115926	28116025	8538982	0	-	0.484848	(0.459,0.49]	chr16	802861	25	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	10	2	2.55849	2.782485	3.00648	0.0112903	0.00493064	0.181488	0.0964485
chr16	681308	681350	8296649	0	+	0.547619	(0.526,0.57]	chr16	770894	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STUB1	ENSG00000103266.11	ENST00000565677.5:ENST00000219548.9:ENST00000569248.5:ENST00000567173.5:ENST00000563505.5:ENST00000567790.1:ENST00000564370.5:ENST00000566181.2:ENST00000566408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	15	2	1.9397	2.781625	3.62355	0.00829429	4.05302e-4	0.145308	0.0135138
chr2	182331798	182331898	1635539	0	-	0.41	(0.392,0.424]	chr2	168577	670	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	62	91	2	2.52651	2.780615	3.03472	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	65437851	65437951	6416019	0	+	0.47	(0.459,0.49]	chr11	577189	152	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	4	10	2	2.47473	2.779545	3.08436	0.00939464	0.00637649	0.161654	0.114061
chr5	140524065	140524152	3337716	0	+	0.344828	(0.32,0.36]	chr5	306385	1	CDS	CDS:UTR5:EXON_MRNA	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000431508.5	protein_coding	protein_coding	protein_coding	protein_coding	36	46	2	2.75215	2.779	2.80585	1.5475e-8	3.483e-10	1.52471e-6	4.34234e-8
chr8	38347591	38347687	5159166	0	-	0.416667	(0.392,0.424]	chr8	462077	2	CDS	CDS:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1	protein_coding	protein_coding	protein_coding	protein_coding	173	255	2	2.56949	2.778805	2.98812	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	57909430	57909528	9546045	0	-	0.438776	(0.424,0.459]	chr19	944834	9	CDS	CDS:EXON_MRNA:INTRON	ZNF417	ENSG00000173480.11	ENST00000594396.1:ENST00000312026.6:ENST00000595559.1	protein_coding	protein_coding	protein_coding	protein_coding	8	15	2	2.61822	2.778495	2.93877	8.23195e-4	7.81679e-4	0.0239037	0.0230767
chr7	77944484	77944584	4444136	0	+	0.44	(0.424,0.459]	chr7	399797	13	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000275575.11:ENST00000248550.7:ENST00000470215.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	20	2	2.19166	2.77726	3.36286	0.00272868	3.10239e-6	0.0646726	1.93959e-4
chr3	149132841	149132941	2039786	0	+	0.4	(0.392,0.424]	chr3	203947	20	INTRON	INTRON	HPS3	ENSG00000163755.9	ENST00000296051.7:ENST00000460120.5:ENST00000462030.5:ENST00000486530.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	31	2	2.49461	2.776345	3.05808	2.18855e-6	1.18812e-6	1.41815e-4	8.13398e-5
chr2	241054124	241054224	1361574	0	+	0.55	(0.526,0.57]	chr2	140545	4	INTRON	INTRON	SNED1	ENSG00000162804.14	ENST00000310397.13:ENST00000405547.7:ENST00000401884.5	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	2.53343	2.77506	3.01669	0.00106428	2.67638e-5	0.0286011	0.00131425
chr2	112179775	112179872	1123679	0	+	0.381443	(0.36,0.392]	chr2	120209	19	INTRON	INTRON	FBLN7	ENSG00000144152.13	ENST00000331203.7:ENST00000409903.5:ENST00000409450.7:ENST00000409667.7:ENST00000441565.5	protein_coding	protein_coding	protein_coding	protein_coding	11	15	2	2.22427	2.77396	3.32365	0.00205969	1.83783e-4	0.0505307	0.00698635
chr21	16279640	16279740	9787684	0	+	0.42	(0.392,0.424]	chr21	970584	218	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000658075.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1	lncRNA	lncRNA	lncRNA	lncRNA	11	18	2	2.54178	2.77388	3.00598	8.19729e-4	4.28333e-5	0.0238903	0.0019752
chr1	103532538	103532638	248230	0	+	0.41	(0.392,0.424]	chr1	25047	44	INTRON	INTRON	RNPC3	ENSG00000185946.16	ENST00000524631.5:ENST00000531883.5:ENST00000423855.7:ENST00000533099.5:ENST00000527062.5	protein_coding	protein_coding	protein_coding	protein_coding	11	18	2	2.46166	2.77387	3.08608	0.00113806	2.78733e-5	0.030384	0.00136499
chr11	62560068	62560130	6615576	0	-	0.564516	(0.526,0.57]	chr11	603524	1	CDS	CDS:EXON_MRNA	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	17	2	2.30916	2.77161	3.23406	0.0104445	2.85504e-5	0.170894	0.00139623
chr2	36393914	36394014	989743	0	+	0.46	(0.459,0.49]	chr2	107808	148	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.62233	2.770805	2.91928	0.00264065	0.0010962	0.063308	0.030375
chr5	69565099	69565132	3206091	0	+	0.121212	[0,0.32]	chr5	295702	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GTF2H2C	ENSG00000183474.16	ENST00000380729.8:ENST00000512736.5:ENST00000514069.6:ENST00000502619.5:ENST00000511629.6:ENST00000506129.5:ENST00000510979.5:ENST00000514162.5:ENST00000505737.2:ENST00000446221.6:ENST00000508325.5:ENST00000507595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	20	2	2.01921	2.770235	3.52126	0.00201185	1.10521e-6	0.0494819	7.70128e-5
chr2	173927975	173928075	1615734	0	-	0.39	(0.36,0.392]	chr2	167000	88	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	11	2	2.43333	2.76992	3.10651	0.00865969	8.23373e-4	0.143462	0.0238997
chr4	4274446	4274527	2823624	0	-	0.592593	(0.57,0.629]	chr4	267765	2	CDS	CDS:EXON_MRNA	LYAR	ENSG00000145220.14	ENST00000343470.9:ENST00000452476.5	protein_coding	protein_coding	protein_coding	protein_coding	30	83	2	2.46016	2.76933	3.0785	3.9603e-9	1e-12	4.29153e-7	1.72912e-10
chrX	73851024	73851124	10373723	0	-	0.47	(0.459,0.49]	chrX	1029968	137	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	6	14	2	2.53709	2.76932	3.00155	0.00201907	0.00154068	0.0510613	0.0389999
chr10	96750636	96750724	5949781	0	+	0.590909	(0.57,0.629]	chr10	533632	5	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	32	87	2	2.63921	2.7690799999999998	2.89895	1.69481e-11	1e-12	2.54749e-9	1.72912e-10
chr11	65499770	65499869	6416239	0	+	0.323232	(0.32,0.36]	chr11	577204	22	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1:ENST00000544868.2:ENST00000617791.1	lncRNA	lncRNA	lncRNA	lncRNA	41753	50677	2	2.75876	2.7683150000000003	2.77787	1.59561e-12	1e-12	2.6826e-10	1.73382e-10
chr1	154597976	154598076	771382	0	-	0.43	(0.424,0.459]	chr1	84797	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	17	2	2.70259	2.7670899999999996	2.83159	0.00129645	1.0679e-4	0.0346786	0.00440115
chr22	45154080	45154177	10057881	0	-	0.515464	(0.49,0.526]	chr22	1002959	16	INTRON	INTRON	NUP50-DT	ENSG00000226328.7	ENST00000426282.6:ENST00000432502.1	lncRNA	lncRNA	lncRNA	lncRNA	8	20	2	2.36352	2.7650449999999998	3.16657	0.00148314	4.17868e-5	0.0389504	0.00194135
chr16	16356926	16357026	8339568	0	+	0.71	(0.629,1]	chr16	777126	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P2	ENSG00000227827.3	ENST00000532739.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	15	2	2.36786	2.763835	3.15981	0.011144	0.00188809	0.179068	0.0466341
chr16	87726664	87726764	8618676	0	-	0.75	(0.629,1]	chr16	812861	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000562913.5:ENST00000567513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.36786	2.763835	3.15981	0.011144	0.00188809	0.179068	0.0466341
chr9	20660522	20660622	5359369	0	+	0.36	(0.32,0.36]	chr9	478343	13	INTRON	INTRON	FOCAD	ENSG00000188352.13	ENST00000380249.5	protein_coding	protein_coding	protein_coding	protein_coding	15	20	2	2.27383	2.76372	3.25361	0.00148419	1.73961e-6	0.0389684	1.15465e-4
chrM	11055	11153	10480487	0	+	0.357143	(0.32,0.36]	chrM	1039008	3	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	50	60	2	2.42435	2.763665	3.10298	4.26359e-10	1e-12	5.3013e-8	1.73382e-10
chr9	21846071	21846170	5363241	0	+	0.282828	[0,0.32]	chr9	478693	77	INTRON	INTRON	MTAP	ENSG00000099810.21	ENST00000644715.2:ENST00000460874.6:ENST00000580900.5:ENST00000419385.5:ENST00000580718.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	11	2	2.67572	2.76365	2.85158	0.00446905	0.00137297	0.0902927	0.0360194
chr14	73109270	73109341	7697063	0	+	0.338028	(0.32,0.36]	chr14	707115	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1:ENST00000530978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	25	2	2.74496	2.762715	2.78047	6.45866e-5	1.28431e-6	0.00285053	8.76439e-5
chr11	122128015	122128115	6763491	0	-	0.45	(0.424,0.459]	chr11	617560	113	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000653565.1:ENST00000649216.1:ENST00000662950.1:ENST00000650497.1:ENST00000664908.1:ENST00000648209.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000656793.1:ENST00000663296.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000660603.1:ENST00000668776.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000666085.1:ENST00000534297.2:ENST00000534782.4	lncRNA	lncRNA	lncRNA	lncRNA	30	51	2	2.52443	2.761215	2.998	1.0218e-7	2.15298e-11	8.68936e-6	3.14887e-9
chr20	58671236	58671297	9682545	0	+	0.42623	(0.424,0.459]	chr20	956426	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000312283.12:ENST00000371141.8:ENST00000359617.8:ENST00000476384.5:ENST00000483434.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000493301.5:ENST00000468590.1:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	24	2	2.04569	2.761115	3.47654	8.96546e-4	8.06573e-7	0.0253113	5.78931e-5
chr1	53946749	53946849	150472	0	+	0.63	(0.629,1]	chr1	18316	2	SS5_PROX	SS5_PROX:INTRON	LRRC42	ENSG00000116212.15	ENST00000371368.5:ENST00000371370.8:ENST00000319223.8:ENST00000444987.1	protein_coding	protein_coding	protein_coding	protein_coding	15	61	2	2.41603	2.7603	3.10457	2.43184e-6	1.86805e-10	1.54498e-4	2.42191e-8
chr1	13778515	13778613	39923	0	+	0.602041	(0.57,0.629]	chr1	4756	2	CDS	CDS:EXON_MRNA:INTRON	PRDM2	ENSG00000116731.23	ENST00000311066.10:ENST00000376048.9:ENST00000235372.11:ENST00000491134.5:ENST00000413440.5:ENST00000343137.8:ENST00000503842.5:ENST00000505823.5:ENST00000407521.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	36	2	2.098	2.75988	3.42176	0.00107583	2.0641e-9	0.0299939	2.33074e-7
chr7	67284992	67285091	4726185	0	-	0.545455	(0.526,0.57]	chr7	423841	103	INTRON	INTRON	PMS2P4	ENSG00000067601.9	ENST00000685171.1:ENST00000688358.1:ENST00000692496.1:ENST00000685583.1:ENST00000688710.1:ENST00000684859.1:ENST00000685318.1:ENST00000691713.1:ENST00000686389.1:ENST00000690253.1:ENST00000688815.1:ENST00000692171.1:ENST00000692360.1:ENST00000689281.1:ENST00000690241.1:ENST00000689629.1:ENST00000689043.1:ENST00000688809.1:ENST00000687432.1:ENST00000687680.1:ENST00000686900.1:ENST00000691782.1:ENST00000693356.1:ENST00000691384.1:ENST00000690440.1:ENST00000686719.1:ENST00000686561.1:ENST00000688238.1:ENST00000687826.1:ENST00000689908.1:ENST00000689385.1:ENST00000689855.1:ENST00000691806.1:ENST00000689028.1:ENST00000688599.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	16	38	2	2.55286	2.7583849999999996	2.96391	2.68266e-6	2.15148e-7	1.69495e-4	1.70146e-5
chr2	68201346	68201445	1474871	0	-	0.373737	(0.36,0.392]	chr2	152610	123	INTRON	INTRON	PPP3R1	ENSG00000221823.11	ENST00000234310.8:ENST00000409752.5:ENST00000409377.1	protein_coding	protein_coding	protein_coding	protein_coding	9	13	2	2.49128	2.7571149999999998	3.02295	0.00169055	0.00109343	0.0439489	0.029258
chr7	55146672	55146740	4391160	0	+	0.544118	(0.526,0.57]	chr7	395453	2	CDS	CDS:EXON_MRNA:INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000450046.1	protein_coding	protein_coding	protein_coding	protein_coding	101	224	2	2.49444	2.7561150000000003	3.01779	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	93594034	93594130	3255218	0	+	0.364583	(0.36,0.392]	chr5	299837	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NR2F1	ENSG00000175745.14	ENST00000327111.8:ENST00000615873.1:ENST00000506162.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	31	2	2.54897	2.755875	2.96278	2.31677e-6	5.8440700000000005e-07	1.49162e-4	4.26321e-5
chr12	103946785	103946867	7001305	0	+	0.390244	(0.36,0.392]	chr12	639941	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	39	2	2.67238	2.755745	2.83911	1.06666e-7	2.7881e-8	8.95036e-6	2.63799e-6
chr13	95186796	95186892	7551279	0	-	0.572917	(0.57,0.629]	chr13	694422	2	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	18	2	2.40221	2.7551300000000003	3.10805	0.00185505	3.71519e-4	0.0474587	0.0125602
chr8	54022207	54022290	5170913	0	-	0.795181	(0.629,1]	chr8	463638	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TCEA1	ENSG00000187735.15	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5:ENST00000522397.5:ENST00000640382.1:ENST00000640041.1:ENST00000518310.5:ENST00000517351.5:ENST00000519704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	27	2	2.53295	2.75446	2.97597	0.00110765	2.70404e-5	0.0305163	0.00133575
chr11	43718640	43718740	6380781	0	+	0.43	(0.424,0.459]	chr11	571581	369	INTRON	INTRON	HSD17B12	ENSG00000149084.13	ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	12	2	2.46913	2.75385	3.03857	0.0100222	5.63002e-4	0.164581	0.0178211
chr11	32399847	32399947	6587607	0	-	0.61	(0.57,0.629]	chr11	599133	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000652724.1:ENST00000640146.2:ENST00000652579.1:ENST00000639907.2:ENST00000651794.1:ENST00000651459.1:ENST00000448076.9:ENST00000527882.5:ENST00000639563.3:ENST00000526685.2:ENST00000527775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	18	2	2.312	2.7536300000000002	3.19526	0.00268566	2.48707e-4	0.063945	0.0089842
chr17	8379871	8379936	8863340	0	-	0.4	(0.392,0.424]	chr17	848304	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL26	ENSG00000161970.15	ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000578069.1:ENST00000584441.5:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6:ENST00000578812.5:ENST00000583515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	25	2	2.54152	2.7535749999999997	2.96563	1.12629e-4	1.50924e-6	0.00462707	9.98059e-5
chr2	44464360	44464460	1008372	0	+	0.34	(0.32,0.36]	chr2	109402	72	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	16	2	2.60111	2.753485	2.90586	5.17734e-4	2.30802e-4	0.0165312	0.00844011
chr19	48645909	48646002	9522630	0	-	0.55914	(0.526,0.57]	chr19	940355	4	UTR5	UTR5:EXON_MRNA	CA11	ENSG00000063180.9	ENST00000084798.9	protein_coding	protein_coding	protein_coding	protein_coding	10	25	2	2.74748	2.753405	2.75933	2.54551e-4	1.18371e-5	0.00914193	6.49715e-4
chr3	142533680	142533780	2459635	0	-	0.25	[0,0.32]	chr3	236203	91	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	13	2	2.65227	2.751925	2.85158	0.00137297	9.28687e-4	0.0360194	0.0261843
chr17	40162001	40162077	8713849	0	+	0.473684	(0.459,0.49]	chr17	826359	1	CDS	CDS:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000474190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	59	2	2.63301	2.7518450000000003	2.87068	6.79712e-9	1.9776e-11	7.0751e-7	2.91377e-9
chr19	48645817	48645909	9522629	0	-	0.532609	(0.526,0.57]	chr19	940355	3	UTR5	UTR5:EXON_MRNA	CA11	ENSG00000063180.9	ENST00000084798.9	protein_coding	protein_coding	protein_coding	protein_coding	24	56	2	2.55717	2.75137	2.94557	8.17749e-8	5.73256e-11	7.11189e-6	7.9856e-9
chr1	222823855	222823883	437134	0	+	0.321429	(0.32,0.36]	chr1	47214	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DISP1	ENSG00000154309.9	ENST00000450784.5:ENST00000674736.1:ENST00000657452.2:ENST00000426045.5:ENST00000675850.1:ENST00000674709.1:ENST00000676412.1:ENST00000676139.1:ENST00000442171.6:ENST00000444858.5:ENST00000435378.6:ENST00000495684.2:ENST00000434872.2:ENST00000675039.1:ENST00000457636.5:ENST00000675961.1:ENST00000676303.1:ENST00000661663.1:ENST00000439440.1:ENST00000669958.1:ENST00000420335.5:ENST00000663328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	9	2	2.65381	2.7513199999999998	2.84883	0.0110381	0.00354866	0.179068	0.0776459
chr7	100362504	100362603	4490949	0	+	0.535354	(0.526,0.57]	chr7	404134	26	INTRON	INTRON	PILRB	ENSG00000121716.21	ENST00000452089.5:ENST00000448382.5:ENST00000609309.3	protein_coding	protein_coding	protein_coding	protein_coding	14	31	2	2.24776	2.751185	3.25461	5.67006e-5	1.45132e-6	0.00257126	9.84773e-5
chr4	77048762	77048862	2921567	0	-	0.43	(0.424,0.459]	chr4	275236	1	SS3_PROX	SS3_PROX:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	12	22	2	2.08935	2.750385	3.41142	0.00403318	2.97629e-7	0.0817225	2.28522e-5
chr12	6341475	6341575	7076154	0	-	0.59	(0.57,0.629]	chr12	649588	3	SS5_PROX	SS5_PROX:INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	16	2	2.6558	2.750235	2.84467	0.00224807	0.0011074	0.0552099	0.0296131
chr7	5064264	5064359	4298717	0	+	0.4	(0.392,0.424]	chr7	389318	7	CDS	CDS:EXON_MRNA	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	14	22	2	2.72957	2.74988	2.77019	4.137e-4	5.78466e-6	0.0139193	3.38916e-4
chr20	35869494	35869551	9638346	0	+	0.350877	(0.32,0.36]	chr20	951764	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000486408.5:ENST00000495338.5:ENST00000485604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	31	2	2.0682	2.74876	3.42932	2.06912e-4	1.30983e-9	0.00764712	1.52713e-7
chr16	75414695	75414795	8604582	0	-	0.35	(0.32,0.36]	chr16	811194	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000566901.5:ENST00000565646.5:ENST00000564286.1:ENST00000566254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	12	2	2.27213	2.74693	3.22173	0.005931	5.53769e-4	0.108771	0.0175806
chr14	75604165	75604264	7705815	0	+	0.515152	(0.49,0.526]	chr14	708334	242	INTRON	INTRON	FLVCR2	ENSG00000119686.10	ENST00000238667.9:ENST00000554496.1:ENST00000555385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	111	243	2	2.74039	2.7462150000000003	2.75204	1e-12	1e-12	1.73382e-10	1.72912e-10
chr7	35898214	35898298	4366116	0	+	0.392857	(0.392,0.424]	chr7	393804	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000635175.1:ENST00000399035.7:ENST00000425198.1:ENST00000492940.1:ENST00000485569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	37	2	2.46216	2.7449250000000003	3.02769	2.1882e-5	5.94308e-10	0.00109269	7.22535e-8
chr4	185313099	185313198	2809049	0	+	0.30303	[0,0.32]	chr4	265513	19	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000512853.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	19	2	2.39021	2.743855	3.0975	0.0010548	6.07813e-6	0.0283744	3.5542e-4
chr2	55344367	55344440	1451633	0	-	0.287671	[0,0.32]	chr2	150615	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000643265.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000468534.2:ENST00000645342.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000646474.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000647383.1:ENST00000645168.1:ENST00000642266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	25	2	2.4953	2.7430399999999997	2.99078	1.63559e-4	3.30927e-7	0.00633276	2.55206e-5
chr15	34437643	34437725	8126445	0	-	0.890244	(0.629,1]	chr15	751847	4	UTR5	UTR5:EXON_MRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5	protein_coding	protein_coding	protein_coding	protein_coding	366	1361	2	2.70423	2.74177	2.77931	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	35402565	35402665	5836490	0	+	0.41	(0.392,0.424]	chr10	524506	73	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	9	2	2.71627	2.741415	2.76656	0.0113141	0.00513884	0.181488	0.0992178
chrX	77846016	77846116	10385367	0	-	0.41	(0.392,0.424]	chrX	1030599	43	INTRON	INTRON	MAGT1	ENSG00000102158.22	ENST00000618282.5:ENST00000358075.11:ENST00000692161.1:ENST00000685015.1:ENST00000691993.1:ENST00000688650.1:ENST00000691172.1:ENST00000689519.1:ENST00000685353.1:ENST00000689137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	38	2	2.67107	2.74138	2.81169	6.5337e-6	2.08536e-9	3.80745e-4	2.35386e-7
chr17	75668515	75668570	8801807	0	+	0.490909	(0.49,0.526]	chr17	838047	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000584861.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	58	127	2	2.39333	2.740665	3.088	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	16232585	16232666	8338434	0	+	0.753086	(0.629,1]	chr16	776733	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000576589.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.71511	2.7403250000000003	2.76554	0.0112307	0.00203575	0.181488	0.0513388
chr17	40141185	40141234	8713637	0	+	0.428571	(0.424,0.459]	chr17	826348	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000583649.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	53	87	2	2.58393	2.7399050000000003	2.89588	3.59568e-12	1e-12	5.82451e-10	1.72912e-10
chr17	62627493	62627590	8980417	0	-	0.680412	(0.629,1]	chr17	865150	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000274565	ENSG00000274565.1	ENST00000611274.1	lncRNA	lncRNA	lncRNA	lncRNA	7	30	2	2.68379	2.73986	2.79593	3.27062e-4	2.18312e-5	0.0111814	0.00111297
chr11	33125114	33125214	6588499	0	-	0.35	(0.32,0.36]	chr11	599277	163	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6	protein_coding	protein_coding	protein_coding	protein_coding	9	11	2	2.19467	2.73916	3.28365	0.00665607	0.00153031	0.118959	0.0389999
chr1	22500493	22500592	71699	0	+	0.444444	(0.424,0.459]	chr1	7105	86	INTRON	INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5:ENST00000400239.6	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.46913	2.737965	3.0068	0.0100222	0.00341471	0.164581	0.0729529
chr3	40465111	40465210	1844902	0	+	0.454545	(0.424,0.459]	chr3	186728	30	UTR3	UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7	protein_coding	protein_coding	protein_coding	protein_coding	5	10	2	2.46913	2.737965	3.0068	0.0100222	0.00341471	0.164581	0.0729529
chr22	28385809	28385909	10005161	0	-	0.42	(0.392,0.424]	chr22	996538	788	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	13	2	2.36514	2.7373250000000002	3.10951	0.00522888	4.28069e-4	0.0992178	0.0141511
chr1	19082153	19082240	527620	0	-	0.494253	(0.49,0.526]	chr1	57537	5	UTR5	UTR5:EXON_MRNA:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375225.7:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	1.87105	2.736845	3.60264	0.0105387	6.16325e-7	0.172293	4.46883e-5
chr16	89987125	89987221	8484748	0	+	0.572917	(0.57,0.629]	chr16	793753	12	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000388970.7:ENST00000458301.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	7	20	2	1.96082	2.73642	3.51202	0.0095418	1.40194e-5	0.163443	7.50732e-4
chr10	42793921	42793991	5840406	0	+	0.457143	(0.424,0.459]	chr10	524871	2	CDS	CDS:EXON_MRNA	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	12	23	2	2.09956	2.73613	3.3727	0.00668885	5.55423e-8	0.116828	4.89622e-6
chr20	44910143	44910243	9658840	0	+	0.61	(0.57,0.629]	chr20	954196	1	CDS_START	CDS_START:CDS:EXON_MRNA	PABPC1L	ENSG00000101104.13	ENST00000255136.8:ENST00000217073.7:ENST00000537323.5:ENST00000217074.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	2.0516200000000002	2.736025	3.42043	0.0120761	9.02612e-4	0.193138	0.0258498
chr5	14496878	14496947	3125312	0	+	0.391304	(0.36,0.392]	chr5	289477	1	CDS	CDS:UTR3:EXON_MRNA	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000344135.5:ENST00000503399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	95	124	2	2.54779	2.7338	2.91981	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	140960437	140960537	2030693	0	+	0.37	(0.36,0.392]	chr3	202877	5	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	28	2	2.00156	2.7330300000000003	3.4645	0.0014506	1.65159e-9	0.0377515	1.89876e-7
chr12	27591285	27591384	6854284	0	+	0.525253	(0.49,0.526]	chr12	626077	70	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5:ENST00000535575.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	12	23	2	1.61056	2.7303550000000003	3.85015	0.00970851	9.88149e-7	0.166237	6.99627e-5
chr12	49052135	49052231	7159944	0	-	0.625	(0.57,0.629]	chr12	658239	14	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.18	ENST00000683543.2:ENST00000301067.12:ENST00000685166.1:ENST00000692637.1	protein_coding	protein_coding	protein_coding	protein_coding	12	35	2	2.098	2.729545	3.36109	0.00107583	5.97006e-9	0.0299939	6.29552e-7
chr6	2199466	2199566	3990570	0	-	0.52	(0.49,0.526]	chr6	361452	236	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	5	12	2	2.28648	2.72666	3.16684	0.00563369	0.00470616	0.104784	0.0901733
chr1	204475168	204475267	842931	0	-	0.494949	(0.49,0.526]	chr1	93787	49	INTRON	INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000415899.2:ENST00000429009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	24	2	2.28648	2.72648	3.16648	0.00563369	4.41927e-7	0.104784	3.31464e-5
chr7	2379187	2379242	4285385	0	+	0.563636	(0.526,0.57]	chr7	388529	2	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1:ENST00000494658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	53	117	2	2.62234	2.7264749999999998	2.83061	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	123396082	123396182	5267034	0	-	0.81	(0.629,1]	chr8	470597	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	26	2	2.68379	2.7254500000000004	2.76711	3.27062e-4	2.05698e-4	0.0111814	0.00769131
chr11	75401639	75401660	6446295	0	+	0.380952	(0.36,0.392]	chr11	582453	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000530164.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000527273.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000534555.5:ENST00000528847.1:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	10	2	2.24636	2.72494	3.20352	0.0120388	0.0019364	0.192743	0.0476694
chr11	12710728	12710828	6325263	0	+	0.48	(0.459,0.49]	chr11	567852	348	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	14	29	2	2.71099	2.72463	2.73827	1.2697e-4	8.06007e-7	0.00503988	5.70031e-5
chr10	116940465	116940538	6266333	0	-	0.369863	(0.36,0.392]	chr10	560712	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5:ENST00000392901.10:ENST00000392903.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	200	253	2	2.64909	2.72413	2.79917	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	49223267	49223350	9668947	0	+	0.457831	(0.424,0.459]	chr20	955527	1	CDS	CDS:EXON_MRNA	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000462328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	76	119	2	2.278	2.72365	3.1693	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	96842364	96842437	1514934	0	-	0.547945	(0.526,0.57]	chr2	157657	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD39:ANKRD23	ENSG00000213337.9:ENSG00000163126.15	ENST00000443120.5:ENST00000318357.9:ENST00000418232.5:ENST00000331001.2:ENST00000462692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	39	2	2.02785	2.722225	3.4166	2.6644e-4	5.53646e-10	0.00953487	6.75559e-8
chr19	3115007	3115072	9265746	0	+	0.615385	(0.57,0.629]	chr19	893409	2	CDS	CDS:EXON_MRNA	GNA11	ENSG00000088256.9	ENST00000078429.9:ENST00000587636.1:ENST00000588401.1	protein_coding	protein_coding	protein_coding	protein_coding	30	79	2	2.69283	2.722025	2.75122	1.69974e-11	8.65075e-12	2.55232e-9	1.3409e-9
chr3	54388473	54388573	1887145	0	+	0.43	(0.424,0.459]	chr3	192367	13	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000492460.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	17	2	2.40429	2.72143	3.03857	5.63002e-4	4.65683e-4	0.0178211	0.0153131
chr1	58782074	58782174	636847	0	-	0.47	(0.459,0.49]	chr1	70822	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	JUN	ENSG00000177606.8	ENST00000678696.1:ENST00000371222.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	12	2	2.66682	2.720225	2.77363	0.00873764	0.00152008	0.144342	0.0397018
chr17	17762140	17762240	8664879	0	+	0.49	(0.459,0.49]	chr17	819356	376	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	5	12	2	2.66682	2.720225	2.77363	0.00873764	0.00152008	0.144342	0.0397018
chr1	58695128	58695207	636739	0	-	0.341772	(0.32,0.36]	chr1	70798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000483003.5:ENST00000489282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	14	2	2.47486	2.7202	2.96554	0.00254567	4.32638e-4	0.0610271	0.0142927
chrX	108503571	108503671	10198582	0	+	0.36	(0.32,0.36]	chrX	1015696	407	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000470339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	14	2	2.47486	2.7202	2.96554	0.00254567	4.32638e-4	0.0610271	0.0142927
chrX	9506838	9506938	10077829	0	+	0.4	(0.392,0.424]	chrX	1005235	46	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	25	34	2	1.87305	2.720115	3.56718	3.93634e-4	3.13807e-10	0.0135724	3.91722e-8
chrX	10466160	10466260	10268410	0	-	0.36	(0.32,0.36]	chrX	1022163	60	INTRON	INTRON	MID1	ENSG00000101871.17	ENST00000453318.6:ENST00000380787.5:ENST00000380785.5:ENST00000317552.9:ENST00000380780.5:ENST00000380779.5:ENST00000380782.6:ENST00000689773.1:ENST00000690004.1:ENST00000691943.1:ENST00000675073.1:ENST00000674917.1:ENST00000413894.5	protein_coding	protein_coding	protein_coding	protein_coding	19	24	2	2.7107	2.71992	2.72914	1.71776e-5	1.52439e-5	8.81544e-4	7.90669e-4
chr11	95786192	95786274	6711921	0	-	0.390244	(0.36,0.392]	chr11	613253	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	FAM76B	ENSG00000077458.13	ENST00000358780.10:ENST00000398187.6:ENST00000543641.5:ENST00000536839.1:ENST00000545654.5:ENST00000540054.5:ENST00000542135.5:ENST00000537749.1:ENST00000538047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	25	2	2.59456	2.7194849999999997	2.84441	6.58392e-4	1.80309e-7	0.0198487	1.45709e-5
chr15	55856696	55856793	8181060	0	-	0.505155	(0.49,0.526]	chr15	758910	1	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	16	2	2.51463	2.7179349999999998	2.92124	0.0130492	7.17059e-5	0.198111	0.00310931
chr19	58558534	58558611	9548995	0	-	0.805195	(0.629,1]	chr19	945310	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2M	ENSG00000130725.8	ENST00000253023.8:ENST00000595957.5	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.39989	2.7177249999999997	3.03556	0.00251311	2.20964e-4	0.0603141	0.00809923
chr20	37503178	37503277	9741033	0	-	0.474747	(0.459,0.49]	chr20	964937	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000613961.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	14	2	2.55849	2.717465	2.87644	0.00493064	6.44081e-4	0.0964485	0.0194527
chr6	150865678	150865750	3929706	0	+	0.819444	(0.629,1]	chr6	357801	1	UTR5	UTR5:EXON_MRNA	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.57158	2.7166449999999998	2.86171	8.48224e-4	7.34532e-4	0.0240064	0.0220209
chr4	54287429	54287485	2620770	0	+	0.517857	(0.49,0.526]	chr4	251288	1	CDS	CDS:EXON_MRNA	PDGFRA	ENSG00000134853.12	ENST00000257290.10	protein_coding	protein_coding	protein_coding	protein_coding	12	29	2	2.31849	2.71624	3.11399	6.51197e-4	1.84284e-7	0.0196517	1.48809e-5
chr9	128263033	128263092	5745004	0	-	0.457627	(0.424,0.459]	chr9	515191	1	CDS	CDS:UTR3:EXON_MRNA	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000685377.1:ENST00000692923.1:ENST00000610329.5:ENST00000687179.1:ENST00000639983.2:ENST00000693736.1:ENST00000450617.7:ENST00000685900.1:ENST00000691841.1:ENST00000490257.6:ENST00000468488.2:ENST00000685382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	19	2	2.64209	2.7158249999999997	2.78956	5.51568e-4	8.52765e-5	0.0175042	0.00363217
chr1	25246527	25246611	547467	0	-	0.678571	(0.629,1]	chr1	60621	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000431849.3:ENST00000568212.1:ENST00000568701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	186	2	2.4498	2.7157	2.9816	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	96554558	96554658	6218360	0	-	0.41	(0.392,0.424]	chr10	556171	11	INTRON	INTRON	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	12	2	2.35343	2.71476	3.07609	0.00280132	0.00278175	0.0657948	0.0645347
chr3	48473014	48473111	2268792	0	-	0.57732000000000006	(0.57,0.629]	chr3	219410	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SHISA5	ENSG00000164054.17	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000442747.5:ENST00000417962.5:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1:ENST00000486344.5:ENST00000424965.5:ENST00000417841.5:ENST00000415268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	21	2	1.94956	2.71333	3.4771	0.00468059	2.57549e-5	0.0901733	0.00126626
chr17	30835287	30835382	8692176	0	+	0.336842	(0.32,0.36]	chr17	822951	13	CDS	CDS:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	7	10	2	2.65381	2.712335	2.77086	0.0110381	0.00179457	0.179068	0.0449876
chr4	20743206	20743305	2585038	0	+	0.373737	(0.36,0.392]	chr4	248192	108	INTRON	INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000506702.5:ENST00000507634.5:ENST00000467997.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	12	2	2.51716	2.71134	2.90552	0.00691076	6.04072e-4	0.12284	0.0189985
chr14	30935233	30935304	7792794	0	-	0.408451	(0.392,0.424]	chr14	717546	2	CDS	CDS:EXON_MRNA	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	27	2	2.5102	2.7097100000000003	2.90922	6.51875e-5	8.87359e-7	0.00284961	6.24546e-5
chr3	40535088	40535187	1845491	0	+	0.565657	(0.526,0.57]	chr3	186842	21	UTR3	UTR3:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	18	2	2.52322	2.7084799999999998	2.89374	0.00370126	8.33799e-5	0.0806443	0.00355751
chr3	52480261	52480340	1882481	0	+	0.556962	(0.526,0.57]	chr3	191663	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000420808.2:ENST00000488380.5:ENST00000489895.5:ENST00000474188.1:ENST00000485765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	15	2	2.25924	2.70827	3.1573	0.00617094	4.45312e-4	0.114097	0.0146627
chr21	33815062	33815160	9807113	0	+	0.489796	(0.459,0.49]	chr21	971937	6	INTRON	INTRON	ITSN1	ENSG00000205726.15	ENST00000399353.5:ENST00000381285.8:ENST00000381291.8:ENST00000399367.7:ENST00000399352.5:ENST00000399349.5:ENST00000399355.6:ENST00000381318.8:ENST00000399338.8:ENST00000379960.9:ENST00000419241.1:ENST00000440794.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	10	2	2.66682	2.70771	2.7486	0.00873764	0.00700666	0.144342	0.12393
chr3	12307547	12307646	1769408	0	+	0.464646	(0.459,0.49]	chr3	181729	12	INTRON	INTRON	PPARG	ENSG00000132170.24	ENST00000397010.7:ENST00000397029.8:ENST00000309576.11:ENST00000681966.1:ENST00000397015.7:ENST00000643888.2:ENST00000643197.2:ENST00000644622.2:ENST00000455517.6:ENST00000681982.1:ENST00000652098.1:ENST00000652431.1:ENST00000652522.1:ENST00000651735.1:ENST00000397026.7:ENST00000497594.5:ENST00000682446.1:ENST00000683586.1:ENST00000684065.1:ENST00000438682.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	10	2	2.66682	2.70771	2.7486	0.00873764	0.00700666	0.144342	0.12393
chr4	151492740	151492840	2759394	0	+	0.34	(0.32,0.36]	chr4	262025	97	INTRON	INTRON	FHIP1A	ENSG00000164142.16	ENST00000435205.6:ENST00000508198.5:ENST00000503146.5:ENST00000513086.5:ENST00000511501.5:ENST00000513962.5:ENST00000512597.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	20	2	2.6977	2.7074350000000003	2.71717	9.10347e-4	7.43963e-6	0.0260463	4.29339e-4
chr2	108820201	108820301	1116267	0	+	0.4	(0.392,0.424]	chr2	119762	37	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000456512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	16	2	2.0571	2.7073400000000003	3.35758	0.0113347	1.10011e-5	0.181692	5.91284e-4
chr12	76060137	76060208	7212519	0	-	0.380282	(0.36,0.392]	chr12	665389	1	CDS	CDS:UTR5:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	27	2	2.3666	2.70631	3.04602	1.21044e-5	6.94473e-6	6.58699e-4	4.03018e-4
chr9	137268730	137268828	5529701	0	+	0.459184	(0.424,0.459]	chr9	498012	10	INTRON	INTRON	NELFB	ENSG00000188986.9	ENST00000343053.6	protein_coding	protein_coding	protein_coding	protein_coding	12	21	2	1.82995	2.705925	3.5819	0.0125201	2.06503e-7	0.199546	1.66936e-5
chr8	51881067	51881167	5167263	0	-	0.41	(0.392,0.424]	chr8	463291	103	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	13	2	2.63664	2.70539	2.77414	0.00277883	9.93591e-4	0.0657788	0.0276375
chr6	147303583	147303683	3914394	0	+	0.48	(0.459,0.49]	chr6	357142	103	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	7	16	2	2.13538	2.7052199999999997	3.27506	0.0128493	3.71826e-5	0.195714	0.00178235
chr16	21435050	21435150	8529960	0	-	0.55	(0.526,0.57]	chr16	801362	36	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000521589.5:ENST00000545358.5:ENST00000543368.1:ENST00000544154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	16	2	2.30916	2.704405	3.09965	0.0104445	9.3122e-5	0.170894	0.00393198
chr16	71680689	71680782	8585098	0	-	0.419355	(0.392,0.424]	chr16	809944	8	INTRON	INTRON	PHLPP2	ENSG00000040199.18	ENST00000568004.5:ENST00000568954.5:ENST00000393524.6:ENST00000567016.1:ENST00000538126.5:ENST00000574977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	13	2	2.63838	2.704285	2.77019	0.00636373	4.137e-4	0.114061	0.0139193
chr11	57310064	57310162	6607084	0	-	0.520408	(0.49,0.526]	chr11	601801	18	CDS	CDS:UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000530920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	50	2	2.5124	2.704185	2.89597	4.23416e-8	1.38879e-8	3.82511e-6	1.38192e-6
chr3	172694863	172694962	2498014	0	-	0.363636	(0.36,0.392]	chr3	239091	464	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	9	2	2.43333	2.70397	2.97461	0.00865969	0.00698532	0.143462	0.123839
chr7	100033304	100033403	4489585	0	+	0.50505	(0.49,0.526]	chr7	403676	1	CDS	CDS:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	63	135	2	2.66172	2.702375	2.74303	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	4339951	4340051	6807910	0	+	0.41	(0.392,0.424]	chr12	621196	24	INTRON	INTRON	TIGAR	ENSG00000078237.7	ENST00000635110.1:ENST00000179259.6:ENST00000537251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	10	2	2.63664	2.7016	2.76656	0.0113141	0.00277883	0.181488	0.0657788
chr7	55173981	55174043	4391451	0	+	0.483871	(0.459,0.49]	chr7	395541	2	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	28	55	2	2.42844	2.7010750000000003	2.97371	1.12993e-7	3.17483e-11	9.46264e-6	4.56082e-9
chr17	51263329	51263386	8742698	0	+	0.403509	(0.392,0.424]	chr17	832276	2	CDS	CDS:EXON_MRNA	UTP18	ENSG00000011260.14	ENST00000225298.12	protein_coding	protein_coding	protein_coding	protein_coding	27	39	2	2.64499	2.69964	2.75429	1.30742e-7	1.008e-7	1.08879e-5	8.57648e-6
chr12	100167389	100167443	7260258	0	-	0.37037	(0.36,0.392]	chr12	668530	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	GOLGA2P5	ENSG00000238105.7	ENST00000397112.8:ENST00000266746.10:ENST00000421840.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	24	2	1.92987	2.6995649999999998	3.46926	0.0051217	1.20866e-8	0.0975711	1.2139e-6
chr1	55215113	55215196	630062	0	-	0.831325	(0.629,1]	chr1	70418	1	UTR5	UTR5:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.17063	2.69835	3.22607	0.00760441	2.53563e-6	0.130982	1.59207e-4
chrX	77682014	77682113	10384098	0	-	0.323232	(0.32,0.36]	chrX	1030512	6	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000493470.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	64	76	2	2.69471	2.6970650000000003	2.69942	1.35858e-12	1e-12	2.31066e-10	1.73382e-10
chr9	122301533	122301633	5482088	0	+	0.5	(0.49,0.526]	chr9	489945	93	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000470366.5:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.62651	2.696325	2.76614	0.00430264	0.00258005	0.0867442	0.0617778
chrX	102904861	102904960	10189633	0	+	0.494949	(0.49,0.526]	chrX	1014636	27	INTRON	INTRON	ENSG00000239407	ENSG00000239407.5	ENST00000426528.5:ENST00000429932.1	lncRNA	lncRNA	lncRNA	lncRNA	5	13	2	2.41199	2.6961199999999996	2.98025	0.00770591	0.00137414	0.135524	0.0360194
chr3	13332484	13332584	2180618	0	-	0.52	(0.49,0.526]	chr3	212858	1	SS3_PROX	SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	13	2	2.31862	2.695425	3.07223	0.0101596	9.76018e-4	0.166645	0.0274227
chr1	245089330	245089430	487096	0	+	0.41	(0.392,0.424]	chr1	51401	16	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000487845.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	45	2	2.42557	2.6948049999999997	2.96404	9.55107e-8	2.19546e-9	8.10786e-6	2.46503e-7
chr19	1915019	1915026	9262542	0	+	0.428571	(0.424,0.459]	chr19	892610	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SCAMP4	ENSG00000227500.10	ENST00000452128.6:ENST00000414057.6:ENST00000460767.5:ENST00000316097.13:ENST00000489554.1:ENST00000409472.5:ENST00000411971.5:ENST00000588907.2:ENST00000590266.5:ENST00000621748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	19	2	2.5555	2.693545	2.83159	4.69004e-4	1.0679e-4	0.0154079	0.00440115
chr8	28530359	28530459	4959723	0	+	0.44	(0.424,0.459]	chr8	444418	18	INTRON	INTRON	FZD3	ENSG00000104290.11	ENST00000537916.2:ENST00000240093.8	protein_coding	protein_coding	protein_coding	protein_coding	33	49	2	2.14679	2.69336	3.23993	6.50587e-7	7.23779e-11	4.70443e-5	9.92382e-9
chr19	39391638	39391738	9346677	0	+	0.55	(0.526,0.57]	chr19	907499	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MED29	ENSG00000063322.15	ENST00000599417.2:ENST00000615911.4:ENST00000315588.11:ENST00000600973.5:ENST00000594368.5:ENST00000596297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	21	2	2.51052	2.69257	2.87462	4.22914e-4	1.65068e-4	0.0140492	0.00638965
chr5	77708241	77708328	3506919	0	-	0.310345	[0,0.32]	chr5	321219	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000517679.5:ENST00000518218.5:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	44	2	2.24154	2.69252	3.1435	3.98165e-6	4.42335e-12	2.39926e-4	7.10272e-10
chr19	6414752	6414842	9421960	0	-	0.711111	(0.629,1]	chr19	922394	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000597656.5:ENST00000595223.5:ENST00000594496.5	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	2.59579	2.691845	2.7879	1.43917e-4	2.86682e-5	0.00564049	0.00140136
chr7	99572144	99572244	4489053	0	+	0.3	[0,0.32]	chr7	403553	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF655	ENSG00000197343.11	ENST00000412636.5:ENST00000252713.9:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2:ENST00000494357.1:ENST00000419215.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	39	2	2.26034	2.69015	3.11996	3.03719e-6	7.08127e-10	1.87193e-4	8.5427e-8
chr11	65424969	65425069	6415890	0	+	0.55	(0.526,0.57]	chr11	577189	23	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	100	213	2	2.49982	2.6893200000000004	2.87882	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	1691130	1691191	6794585	0	+	0.704918	(0.629,1]	chr12	620325	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	39	2	2.50996	2.68913	2.8683	1.59487e-5	7.79334e-6	8.2656e-4	4.41845e-4
chr3	170181715	170181749	2490676	0	-	0.529412	(0.526,0.57]	chr3	238569	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5:ENST00000497658.5:ENST00000481639.1:ENST00000491258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	19	2	2.05409	2.6882099999999998	3.32233	0.00236757	1.36681e-4	0.0572654	0.00539233
chr5	14459121	14459220	3124917	0	+	0.545455	(0.526,0.57]	chr5	289383	174	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000515710.1:ENST00000639876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	37	2	1.97987	2.6869199999999998	3.39397	1.07054e-4	2.34953e-8	0.00441139	2.25889e-6
chr22	28742928	28743028	9919084	0	+	0.5	(0.49,0.526]	chr22	985184	2	SS5_PROX	SS5_PROX:INTRON	HSCB	ENSG00000100209.11	ENST00000216027.8:ENST00000450178.5:ENST00000398941.6:ENST00000420442.5:ENST00000485599.5:ENST00000483861.5:ENST00000495977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	11	2	2.51463	2.6861699999999997	2.85771	0.0130492	0.00321931	0.198111	0.0703477
chrM	10144	10231	10480478	0	+	0.494253	(0.49,0.526]	chrM	1039003	2	CDS	CDS:EXON_MRNA	MT-ND3	ENSG00000198840.2	ENST00000361227.2	protein_coding	protein_coding	protein_coding	protein_coding	4	11	2	2.51463	2.6861699999999997	2.85771	0.0130492	0.00321931	0.198111	0.0703477
chr5	150375720	150375814	3356913	0	+	0.62766	(0.57,0.629]	chr5	308584	1	CDS	CDS:EXON_MRNA:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000515035.5:ENST00000674413.1:ENST00000514442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	95	2	2.33091	2.68602	3.04113	6.79886e-11	1e-12	9.34957e-9	1.73382e-10
chrX	53146546	53146646	10132255	0	+	0.46	(0.459,0.49]	chrX	1010677	32	INTRON	INTRON	KANTR	ENSG00000232593.7	ENST00000603385.2	protein_coding	processed_transcript	protein_coding	processed_transcript	87	164	2	2.52619	2.68591	2.84563	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	82051582	82051666	9032436	0	-	0.857143	(0.629,1]	chr17	872833	2	CDS	CDS:EXON_MRNA	RFNG	ENSG00000169733.12	ENST00000582478.5:ENST00000310496.9:ENST00000584515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	21	2	1.90268	2.685905	3.46913	0.00619111	3.04018e-4	0.114391	0.0105767
chr15	90566236	90566336	8080665	0	+	0.52	(0.49,0.526]	chr15	747252	257	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000560927.1:ENST00000687075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	11	2	2.60562	2.68588	2.76614	0.0102832	0.00430264	0.170122	0.0867442
chr6	36084599	36084698	3766181	0	+	0.333333	(0.32,0.36]	chr6	344238	76	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	20	2	2.34533	2.685225	3.02512	1.36648e-4	9.87702e-5	0.00548551	0.00408756
chr12	88121081	88121166	7228671	0	-	0.364706	(0.36,0.392]	chr12	666466	2	CDS	CDS:UTR3:EXON_MRNA	CEP290	ENSG00000198707.17	ENST00000674971.1:ENST00000672414.2:ENST00000673058.2:ENST00000675833.1:ENST00000675476.1:ENST00000309041.12:ENST00000675794.1:ENST00000676074.1:ENST00000675408.1:ENST00000675230.1:ENST00000675628.1:ENST00000552810.6:ENST00000676363.1:ENST00000676448.1:ENST00000604024.5:ENST00000547926.7:ENST00000671822.2:ENST00000676351.1:ENST00000397838.8:ENST00000675559.1:ENST00000676418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	14	2	2.18922	2.6839500000000003	3.17868	0.00764253	1.02243e-4	0.130982	0.00424251
chr20	34749402	34749495	9729864	0	-	0.365591	(0.36,0.392]	chr20	963228	1	CDS	CDS:EXON_MRNA	NCOA6	ENSG00000198646.14	ENST00000628752.2:ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	46	59	2	2.18682	2.683835	3.18085	2.83183e-7	1e-12	2.21421e-5	1.72912e-10
chr1	161922678	161922778	319396	0	+	0.47	(0.459,0.49]	chr1	36141	99	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	25	2	2.38063	2.683075	2.98552	6.19177e-5	5.02154e-5	0.00274668	0.00230209
chr15	90598588	90598683	8080993	0	+	0.442105	(0.424,0.459]	chr15	747264	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000687075.1:ENST00000561119.5:ENST00000558005.1:ENST00000561290.1:ENST00000558496.5:ENST00000561255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	13	2	2.20128	2.68228	3.16328	0.00473715	0.0011776	0.0954457	0.0313499
chr3	142516113	142516212	2459455	0	-	0.50505	(0.49,0.526]	chr3	236185	2	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	23	2	2.53839	2.68194	2.82549	1.41036e-4	1.20726e-4	0.00565741	0.00489964
chr5	146160373	146160429	3634231	0	-	0.303571	[0,0.32]	chr5	330133	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	11	2	2.43466	2.681635	2.92861	0.00356148	0.00282946	0.0754075	0.0650221
chr6	30670952	30671035	4033799	0	-	0.53012	(0.526,0.57]	chr6	365359	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX16	ENSG00000204560.10	ENST00000376442.8:ENST00000415603.1	protein_coding	protein_coding	protein_coding	protein_coding	23	51	2	2.26576	2.68093	3.0961	3.05524e-6	6.83752e-11	1.91132e-4	9.39871e-9
chr12	121444185	121444272	7304339	0	-	0.574713	(0.57,0.629]	chr12	674298	3	CDS	CDS:EXON_MRNA:INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5:ENST00000543025.5:ENST00000538243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	32	2	1.82988	2.680375	3.53087	0.00316694	1.56298e-8	0.0718148	1.53949e-6
chr10	7381798	7381898	6044589	0	-	0.46	(0.459,0.49]	chr10	542617	1	CDS_START	CDS_START:CDS:EXON_MRNA	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1:ENST00000379711.2:ENST00000682043.1:ENST00000682180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	21	2	2.31751	2.6797050000000002	3.0419	2.53997e-4	1.95784e-4	0.0091261	0.00725539
chr2	24074075	24074134	1396233	0	-	0.338983	(0.32,0.36]	chr2	144704	1	CDS	CDS:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5:ENST00000478050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	15	2	2.24435	2.6793449999999996	3.11434	0.0121019	1.5725e-5	0.185048	8.1536e-4
chr15	44536150	44536248	8149053	0	-	0.530612	(0.526,0.57]	chr15	755131	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	EIF3J-DT	ENSG00000179523.6	ENST00000560750.1:ENST00000313807.5:ENST00000560049.2:ENST00000657789.1:ENST00000653319.1:ENST00000559356.1	lncRNA	lncRNA	lncRNA	lncRNA	8	19	2	2.40577	2.678595	2.95142	8.62466e-4	2.97995e-4	0.0248025	0.0105806
chr17	76742176	76742222	8804164	0	+	0.456522	(0.424,0.459]	chr17	838676	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MFSD11	ENSG00000092931.12	ENST00000586622.5:ENST00000621483.4:ENST00000355954.7:ENST00000588460.6:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000588031.5:ENST00000685175.1:ENST00000588670.5:ENST00000588768.5:ENST00000585584.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	31	2	2.60244	2.6783799999999998	2.75432	4.10201e-6	2.89733e-6	2.46432e-4	1.79605e-4
chr19	8444920	8444998	9279096	0	+	0.692308	(0.629,1]	chr19	895988	3	UTR5	UTR5:EXON_MRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	39	2	2.27986	2.677985	3.07611	1.6554e-4	6.36629e-7	0.00640635	4.63396e-5
chr18	12431149	12431248	9063714	0	+	0.606061	(0.57,0.629]	chr18	875911	1	UTR3	UTR3:EXON_MRNA	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	24	2	2.20594	2.677665	3.14939	8.50719e-4	3.05043e-5	0.0245129	0.00147298
chr18	5291628	5291724	9169562	0	-	0.5625	(0.526,0.57]	chr18	883667	8	CDS	CDS:EXON_MRNA	ZBTB14	ENSG00000198081.11	ENST00000357006.8:ENST00000614697.4:ENST00000615385.4:ENST00000651870.1:ENST00000400143.7:ENST00000582388.5:ENST00000582135.5	protein_coding	protein_coding	protein_coding	protein_coding	5	13	2	2.30916	2.6774750000000003	3.04579	0.0104445	0.00107756	0.170894	0.0299955
chr6	37476594	37476694	3770511	0	+	0.53	(0.526,0.57]	chr6	345030	4	SS5_PROX	SS5_PROX:INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9:ENST00000475364.1:ENST00000457419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	2.30916	2.6774750000000003	3.04579	0.0104445	0.00107756	0.170894	0.0299955
chr2	30606015	30606100	976073	0	+	0.482353	(0.459,0.49]	chr2	106564	1	CDS	CDS:EXON_MRNA:INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	30	2	2.30212	2.677355	3.05259	2.95923e-5	4.05119e-6	0.00143346	2.43673e-4
chr17	15467540	15467621	8879852	0	-	0.54321	(0.526,0.57]	chr17	849610	2	UTR5	UTR5:EXON_MRNA:INTRON	CDRT4	ENSG00000239704.11	ENST00000619038.5:ENST00000520956.2:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	13	2	2.52322	2.6773049999999996	2.83139	0.00370126	0.00350122	0.0806443	0.0746524
chr10	24703716	24703816	6083633	0	-	0.47	(0.459,0.49]	chr10	545331	330	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	22	2	2.36873	2.677125	2.98552	3.70315e-4	5.02154e-5	0.0128257	0.00230209
chr5	71510555	71510654	3208060	0	+	0.494949	(0.49,0.526]	chr5	296025	12	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	79	2	2.48621	2.676255	2.8663	1.8694e-10	1e-12	2.42268e-8	1.73382e-10
chr11	71880505	71880604	6635556	0	-	0.323232	(0.32,0.36]	chr11	607957	13	INTRON	INTRON	XNDC1N	ENSG00000254469.10	ENST00000679695.1:ENST00000532852.5	protein_coding	protein_coding	protein_coding	protein_coding	9	12	2	2.36247	2.675225	2.98798	0.00885949	4.39493e-4	0.154729	0.0145031
chr7	2174723	2174823	4609845	0	-	0.34	(0.32,0.36]	chr7	415098	2	SS5_PROX	SS5_PROX:INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000464742.5:ENST00000491858.5:ENST00000459731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	12	2	2.63272	2.674945	2.71717	0.00503554	9.10347e-4	0.0976839	0.0260463
chr7	100436207	100436274	4790610	0	-	0.776119	(0.629,1]	chr7	429568	2	CDS	CDS:EXON_MRNA	PPP1R35	ENSG00000160813.7	ENST00000292330.3:ENST00000487452.1:ENST00000491407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	2.63461	2.67486	2.71511	0.0028169	0.00203575	0.0647686	0.0513388
chr13	97384529	97384629	7423629	0	+	0.42	(0.392,0.424]	chr13	683890	176	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	11	2	2.58183	2.674195	2.76656	0.0113141	0.00150665	0.181488	0.0395097
chr7	139628952	139629039	4867818	0	-	0.402299	(0.392,0.424]	chr7	435652	1	CDS	CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	7	11	2	2.58183	2.674195	2.76656	0.0113141	0.00150665	0.181488	0.0395097
chr11	123194012	123194112	6769137	0	-	0.59	(0.57,0.629]	chr11	617747	957	INTRON	INTRON	CLMP	ENSG00000166250.12	ENST00000448775.4	protein_coding	protein_coding	protein_coding	protein_coding	7	19	2	1.87014	2.67362	3.4771	0.0129867	2.57549e-5	0.197645	0.00126626
chr16	16331928	16331980	8339351	0	+	0.576923	(0.57,0.629]	chr16	777047	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	17	2	2.40221	2.6729200000000004	2.94363	0.00185505	0.00107587	0.0474587	0.0288605
chrM	6772	6868	10480445	0	+	0.4375	(0.424,0.459]	chrM	1038991	9	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	75	116	2	2.63687	2.67263	2.70839	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	130144483	130144582	10429499	0	-	0.424242	(0.392,0.424]	chrX	1034547	35	INTRON	INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674957.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000676048.1:ENST00000675240.1:ENST00000675111.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000533719.2:ENST00000676144.1:ENST00000675774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	13	2	2.30301	2.672345	3.04168	0.0122095	1.87463e-4	0.186377	0.00711698
chr21	44325761	44325860	9826445	0	+	0.606061	(0.57,0.629]	chr21	974670	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5:ENST00000498841.5:ENST00000467315.5:ENST00000460521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	12	2	2.30578	2.67231	3.03884	0.0076713	0.00676458	0.130982	0.1204
chr20	34851230	34851299	9730710	0	-	0.695652	(0.629,1]	chr20	963310	1	CDS	CDS:EXON_MRNA	GGT7	ENSG00000131067.17	ENST00000336431.10:ENST00000469018.5:ENST00000470952.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	2.36786	2.67198	2.9761	0.011144	0.00463564	0.179068	0.089408
chr16	4113948	4114047	8500653	0	-	0.606061	(0.57,0.629]	chr16	796877	3	CDS	CDS:EXON_MRNA	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding	6	17	2	2.14758	2.6714200000000003	3.19526	0.0066476	2.48707e-4	0.116278	0.0089842
chr3	50289446	50289537	2278055	0	-	0.626374	(0.57,0.629]	chr3	221780	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFRD2	ENSG00000214706.12	ENST00000417626.8:ENST00000436390.5:ENST00000474556.5:ENST00000464258.5:ENST00000438296.1:ENST00000414734.5:ENST00000483071.1:ENST00000489569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	15	2	2.39432	2.668975	2.94363	0.00573141	0.00107587	0.106459	0.0288605
chr20	336134	336234	9690479	0	-	0.38	(0.36,0.392]	chr20	958281	110	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	11	15	2	2.56425	2.668555	2.77286	0.00178276	3.50506e-4	0.0462639	0.0119555
chr16	70370222	70370303	8426583	0	+	0.555556	(0.526,0.57]	chr16	789471	1	CDS	CDS:UTR3:EXON_MRNA	DDX19A	ENSG00000168872.17	ENST00000569771.5:ENST00000302243.12:ENST00000569319.5:ENST00000417604.6:ENST00000575878.1:ENST00000566574.5:ENST00000562140.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	11	2	2.57946	2.668165	2.75687	0.0110174	0.00442955	0.179063	0.0875511
chr10	71819806	71819900	6156464	0	-	0.531915	(0.526,0.57]	chr10	551068	2	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	47	2	2.48387	2.6677400000000002	2.85161	1.40217e-7	5.89324e-8	1.16606e-5	5.17006e-6
chr9	14166862	14166961	5575206	0	-	0.323232	(0.32,0.36]	chr9	500093	106	INTRON	INTRON	NFIB	ENSG00000147862.18	ENST00000543693.5:ENST00000380953.6:ENST00000380959.7:ENST00000397575.7:ENST00000397581.6:ENST00000397579.6:ENST00000606230.2:ENST00000646622.1:ENST00000635877.1:ENST00000636057.1:ENST00000637640.1:ENST00000637742.1:ENST00000636432.1:ENST00000636735.1:ENST00000380934.8:ENST00000380924.1:ENST00000636063.1	protein_coding	protein_coding	protein_coding	protein_coding	7	9	2	2.36247	2.66757	2.97267	0.00885949	0.00701727	0.154729	0.122029
chr16	4115877	4115971	8500674	0	-	0.755319	(0.629,1]	chr16	796883	3	UTR5	UTR5:EXON_MRNA	ADCY9	ENSG00000162104.10	ENST00000294016.8	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.47168	2.666695	2.86171	0.00639682	8.48224e-4	0.114061	0.0240064
chr16	86513571	86513669	8476355	0	+	0.581633	(0.57,0.629]	chr16	792327	6	UTR3	UTR3:EXON_MRNA	FOXF1	ENSG00000103241.7	ENST00000262426.6	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	2.39432	2.665795	2.93727	0.00573141	1.46034e-4	0.106459	0.00564049
chr16	2769284	2769381	8304944	0	+	0.618557	(0.57,0.629]	chr16	773143	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000573311.1:ENST00000571041.1:ENST00000570705.1:ENST00000576878.1:ENST00000574331.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	22	2	2.43853	2.665615	2.8927	3.83438e-4	2.63329e-4	0.0129397	0.00943086
chr17	50744732	50744813	8741921	0	+	0.395062	(0.392,0.424]	chr17	832154	2	CDS	CDS:UTR3:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000507503.1:ENST00000511068.1:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	195	263	2	2.64531	2.664335	2.68336	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43237760	43237860	8937839	0	-	0.59	(0.57,0.629]	chr17	859071	76	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	14	37	2	2.65632	2.66432	2.67232	3.91089e-6	3.19914e-6	2.38665e-4	1.99757e-4
chr12	88120996	88121081	7228670	0	-	0.411765	(0.392,0.424]	chr12	666466	1	CDS	CDS:UTR3:EXON_MRNA	CEP290	ENSG00000198707.17	ENST00000674971.1:ENST00000672414.2:ENST00000673058.2:ENST00000675833.1:ENST00000675476.1:ENST00000309041.12:ENST00000675794.1:ENST00000676074.1:ENST00000675408.1:ENST00000675230.1:ENST00000675628.1:ENST00000552810.6:ENST00000676363.1:ENST00000676448.1:ENST00000604024.5:ENST00000547926.7:ENST00000671822.2:ENST00000676351.1:ENST00000397838.8:ENST00000675559.1:ENST00000676418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	14	2	2.55773	2.66396	2.77019	0.00357576	4.137e-4	0.0781496	0.0139193
chr19	54455363	54455431	9386724	0	+	0.632353	(0.629,1]	chr19	915827	1	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000439657.5:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	15	57	2	2.10807	2.66393	3.21979	5.03059e-5	1.69072e-10	0.00230367	2.21044e-8
chr5	150364112	150364182	3356782	0	+	0.557143	(0.526,0.57]	chr5	308539	1	CDS	CDS:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000646961.1:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000643812.1:ENST00000515516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	68	140	2	2.46892	2.663285	2.85765	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	176006875	176006975	808879	0	-	0.46	(0.459,0.49]	chr1	90084	170	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	17	2	2.62233	2.662435	2.70254	0.0010962	5.05409e-4	0.030375	0.0162415
chr3	51403310	51403395	2280475	0	-	0.435294	(0.424,0.459]	chr3	222282	3	CDS	CDS:EXON_MRNA	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	38	59	2	2.49415	2.6607399999999997	2.82733	2.9758e-9	2.47938e-11	3.27266e-7	3.61739e-9
chr12	6374446	6374525	7076459	0	-	0.544304	(0.526,0.57]	chr12	649658	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SCNN1A	ENSG00000111319.13	ENST00000360168.7:ENST00000228916.7:ENST00000338748.9:ENST00000396966.6:ENST00000543768.1:ENST00000538979.5:ENST00000544882.1:ENST00000536176.1:ENST00000543585.1:ENST00000536788.1:ENST00000542260.1:ENST00000542436.1:ENST00000538957.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	17	2	2.61109	2.6603399999999997	2.70959	0.00126833	7.5896e-4	0.0335079	0.0225125
chr12	103930351	103930433	7001107	0	+	0.743902	(0.629,1]	chr12	639865	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000548622.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	46	2	2.49269	2.659805	2.82692	1.46992e-5	2.67293e-7	7.83758e-4	2.07658e-5
chr22	50438598	50438680	9977383	0	+	0.585366	(0.57,0.629]	chr22	992766	1	CDS	CDS:EXON_MRNA	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	15	36	2	2.19614	2.65919	3.12224	1.43015e-5	3.85071e-6	7.62958e-4	2.35171e-4
chr18	24113861	24113957	9084595	0	+	0.416667	(0.392,0.424]	chr18	877911	2	SS5_PROX	SS5_PROX:INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8:ENST00000540918.2	protein_coding	protein_coding	protein_coding	protein_coding	20	29	2	2.45157	2.65907	2.86657	7.42624e-5	2.87272e-7	0.00320376	2.23534e-5
chr12	110468975	110469018	7021299	0	+	0.837209	(0.629,1]	chr12	642386	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	FAM216A	ENSG00000204856.12	ENST00000538285.6:ENST00000548869.1:ENST00000548449.1:ENST00000377673.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.55191	2.658725	2.76554	0.0112307	0.004809	0.181488	0.0964485
chr16	28711506	28711596	8363192	0	+	0.666667	(0.629,1]	chr16	779790	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000569690.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.55191	2.658725	2.76554	0.0112307	0.004809	0.181488	0.0964485
chr3	42804071	42804171	2248541	0	-	0.69	(0.629,1]	chr3	217248	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HIGD1A	ENSG00000181061.14	ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5:ENST00000452906.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	2.55191	2.658725	2.76554	0.0112307	0.004809	0.181488	0.0964485
chr9	5902842	5902942	5547434	0	-	0.29	[0,0.32]	chr9	499345	32	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000436015.6:ENST00000443149.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	6	8	2	2.61711	2.656675	2.69624	0.0119953	0.0100202	0.184357	0.170122
chr5	43034550	43034649	3458621	0	-	0.383838	(0.36,0.392]	chr5	317991	159	INTRON	INTRON	ENSG00000177738	ENSG00000177738.5	ENST00000503152.2:ENST00000665537.1	lncRNA	lncRNA	lncRNA	lncRNA	26	34	2	2.25264	2.65613	3.05962	8.26554e-5	2.04041e-9	0.00352987	2.30574e-7
chr8	90007175	90007274	5020206	0	+	0.484848	(0.459,0.49]	chr8	450528	5	INTRON	INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	15	2	2.53709	2.65536	2.77363	0.00154068	0.00152008	0.0397018	0.0389999
chr18	39335049	39335138	9213290	0	-	0.539326	(0.526,0.57]	chr18	887446	3	EXON_PSEUDO	EXON_PSEUDO	RPL7AP66	ENSG00000175886.10	ENST00000588490.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	35	74	2	2.22092	2.6552350000000002	3.08955	2.5533e-8	1e-12	2.43084e-6	1.73382e-10
chr12	132036195	132036294	7057931	0	+	0.59596	(0.57,0.629]	chr12	647307	37	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	71	2	2.3444	2.65505	2.9657	4.52396e-9	1.35508e-11	4.86063e-7	2.06494e-9
chr19	10654335	10654411	9282869	0	+	0.697368	(0.629,1]	chr19	896761	2	UTR5	UTR5:EXON_MRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	2.52204	2.65497	2.7879	2.64055e-4	1.43917e-4	0.00945161	0.00564049
chr22	17048525	17048625	9891004	0	+	0.5	(0.49,0.526]	chr22	981653	7	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	23	2	1.90716	2.654895	3.40263	0.00370444	4.0386e-6	0.077446	2.43063e-4
chr5	281628	281728	3107064	0	+	0.54	(0.526,0.57]	chr5	287746	48	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	15	2	2.59957	2.65458	2.70959	0.00283719	0.00126833	0.0662445	0.0335079
chr11	122406250	122406350	6766293	0	-	0.35	(0.32,0.36]	chr11	617637	213	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000670396.1:ENST00000655138.1:ENST00000655814.1:ENST00000637700.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000648082.1:ENST00000658452.1:ENST00000670520.1:ENST00000655288.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	14	17	2	2.59058	2.653875	2.71717	9.10347e-4	1.18258e-4	0.0260463	0.00476512
chr6	36540102	36540202	4049190	0	-	0.44	(0.424,0.459]	chr6	369111	1	CDS_START	CDS_START:CDS:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	52	79	2	2.59833	2.65364	2.70895	5.59341e-12	1e-12	8.87734e-10	1.72912e-10
chr15	59208380	59208480	8194113	0	-	0.29	[0,0.32]	chr15	759796	3	SS5_PROX	SS5_PROX:INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559269.5:ENST00000560749.1:ENST00000560642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	13	2	2.15694	2.6533249999999997	3.14971	0.00747007	2.32754e-4	0.129812	0.00843063
chr5	59092823	59092923	3473156	0	-	0.44	(0.424,0.459]	chr5	319179	13	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	23	2	2.64209	2.6523700000000003	2.66265	8.52765e-5	4.68051e-5	0.00363217	0.00215203
chr10	118039346	118039440	6270292	0	-	0.37234	(0.36,0.392]	chr10	560870	5	CDS	CDS:EXON_MRNA	RAB11FIP2	ENSG00000107560.12	ENST00000355624.8:ENST00000369199.5:ENST00000483413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	21	2	2.61904	2.649505	2.67997	4.59585e-4	1.57402e-5	0.0151123	8.20905e-4
chr11	3104577	3104677	6539664	0	-	0.69	(0.629,1]	chr11	594081	2	SS3_PROX	SS3_PROX:INTRON	OSBPL5	ENSG00000021762.20	ENST00000263650.12:ENST00000389989.7:ENST00000525498.5:ENST00000471998.6:ENST00000348039.9:ENST00000534491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	2.53295	2.649245	2.76554	0.0112307	0.00110765	0.181488	0.0305163
chr6	4945046	4945145	3693835	0	+	0.575758	(0.57,0.629]	chr6	336571	9	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	20	2	2.49138	2.649035	2.80669	0.00295413	9.15468e-5	0.0676474	0.00387303
chr4	56314137	56314235	2626731	0	+	0.571429	(0.57,0.629]	chr4	251893	2	CDS	CDS:EXON_MRNA	CRACD	ENSG00000109265.15	ENST00000682029.1:ENST00000636006.1:ENST00000646253.1:ENST00000264229.11:ENST00000504228.6:ENST00000541073.5	protein_coding	protein_coding	protein_coding	protein_coding	24	60	2	2.27745	2.6486650000000003	3.01988	3.37222e-7	5.96253e-11	2.59322e-5	8.29519e-9
chr9	133348243	133348246	5520910	0	+	0.333333	(0.32,0.36]	chr9	495882	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	12	2	2.07535	2.6485399999999997	3.22173	0.00955487	5.53769e-4	0.157305	0.0175806
chr19	46746045	46746090	9365989	0	+	0.777778	(0.629,1]	chr19	911598	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FKRP	ENSG00000181027.11	ENST00000601299.5:ENST00000596974.5:ENST00000595570.5:ENST00000600646.5:ENST00000318584.10:ENST00000391909.7:ENST00000593875.5:ENST00000597313.5:ENST00000598271.5:ENST00000600977.5:ENST00000593995.5:ENST00000597339.5:ENST00000594467.5:ENST00000600005.5:ENST00000600227.5:ENST00000593800.5:ENST00000602181.5:ENST00000600629.5:ENST00000595868.5:ENST00000602250.5:ENST00000600872.5:ENST00000600681.5:ENST00000596460.5:ENST00000597403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	21	2	2.13683	2.64832	3.15981	0.00188809	0.00144272	0.0466341	0.0382827
chr7	55165358	55165437	4391358	0	+	0.582278	(0.57,0.629]	chr7	395513	2	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7	protein_coding	protein_coding	protein_coding	protein_coding	72	176	2	2.53562	2.648255	2.76089	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	64441290	64441384	7653937	0	+	0.404255	(0.392,0.424]	chr14	704719	12	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000554677.1:ENST00000556771.5:ENST00000553405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	30	2	2.54152	2.6479049999999997	2.75429	1.12629e-4	1.008e-7	0.00462707	8.57648e-6
chr9	122929868	122929967	5724241	0	-	0.474747	(0.459,0.49]	chr9	513364	96	INTRON	INTRON	ZBTB26	ENSG00000171448.9	ENST00000373656.4:ENST00000373654.1	protein_coding	protein_coding	protein_coding	protein_coding	7	14	2	2.16118	2.6476249999999997	3.13407	0.00659564	7.72738e-4	0.117905	0.0225969
chr8	70608271	70608343	5190898	0	-	0.736111	(0.629,1]	chr8	465203	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	115	2	2.57691	2.647045	2.71718	4.48486e-12	1e-12	7.17522e-10	1.72912e-10
chr15	85415470	85415551	8070296	0	+	0.419753	(0.392,0.424]	chr15	746001	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	AKAP13:FABP5P9	ENSG00000170776.22:ENSG00000259630.2	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1:ENST00000559487.2	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:transcribed_processed_pseudogene	10	16	2	2.38155	2.64701	2.91247	0.00993679	2.63771e-5	0.169739	0.00130428
chr12	50420287	50420387	6907628	0	+	0.32	[0,0.32]	chr12	629780	1	SS3_PROX	SS3_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	7	9	2	2.59553	2.645885	2.69624	0.0100202	0.00557929	0.170122	0.105396
chr3	142734285	142734385	2035238	0	+	0.25	[0,0.32]	chr3	203396	92	INTRON	INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10:ENST00000460401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	9	2	2.59553	2.645885	2.69624	0.0100202	0.00557929	0.170122	0.105396
chr1	161211481	161211578	315867	0	+	0.443299	(0.424,0.459]	chr1	35665	9	EXON_MRNA	EXON_MRNA:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	11	2	2.46913	2.645765	2.8224	0.0100222	0.00212808	0.164581	0.0533203
chr9	91915471	91915571	5659245	0	-	0.46	(0.459,0.49]	chr9	506494	284	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	28	2	2.15232	2.645765	3.13921	2.05439e-4	2.1937e-6	0.0075955	1.42091e-4
chrM	9403	9501	10480471	0	+	0.418367	(0.392,0.424]	chrM	1039002	2	CDS	CDS:EXON_MRNA	MT-CO3	ENSG00000198938.2	ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	13	19	2	2.51122	2.6442449999999997	2.77727	4.47573e-4	9.56563e-5	0.0150244	0.00399919
chr16	70762880	70762952	8582963	0	-	0.5	(0.49,0.526]	chr16	809671	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VAC14	ENSG00000103043.15	ENST00000261776.10:ENST00000568886.5:ENST00000568548.5:ENST00000563662.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	35	72	2	2.53309	2.64358	2.75407	1.28968e-10	2.06929e-11	1.73011e-8	3.03775e-9
chr18	21110910	21111000	9187697	0	-	0.588889	(0.57,0.629]	chr18	885466	1	UTR5	UTR5:EXON_MRNA	ROCK1	ENSG00000067900.8	ENST00000399799.3:ENST00000635540.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	15	2	2.6312	2.6435000000000004	2.6558	0.00652833	0.0011074	0.116779	0.0296131
chr3	49057609	49057702	2273355	0	-	0.591398	(0.57,0.629]	chr3	220638	9	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000479449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	20	2	2.17523	2.6416399999999998	3.10805	0.00131222	3.71519e-4	0.0350189	0.0125602
chr2	127984185	127984285	1562984	0	-	0.4	(0.392,0.424]	chr2	162278	57	INTRON	INTRON	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	11	15	2	1.98288	2.640265	3.29765	0.00758873	1.04913e-4	0.133909	0.00432856
chr11	95875678	95875778	6712534	0	-	0.38	(0.36,0.392]	chr11	613360	88	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	14	2	2.43333	2.64007	2.84681	0.00865969	1.1952e-4	0.143462	0.00481414
chr16	70512238	70512267	8581800	0	-	0.482759	(0.459,0.49]	chr16	809505	1	CDS	CDS:UTR3:EXON_MRNA	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000562200.5:ENST00000564653.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	23	2	2.34353	2.6400550000000003	2.93658	1.5098e-4	1.04307e-4	0.00579694	0.00432201
chr2	152663712	152663771	1581726	0	-	0.322034	(0.32,0.36]	chr2	163806	2	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000472760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	26	2	2.27823	2.6379900000000003	2.99775	6.22237e-5	2.19245e-6	0.0027595	1.42663e-4
chr19	55092782	55092868	9539818	0	-	0.755814	(0.629,1]	chr19	943865	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8:ENST00000435544.6:ENST00000592993.1:ENST00000592754.5:ENST00000588277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	47	165	2	2.55873	2.637805	2.71688	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	136872015	136872115	2012765	0	+	0.42	(0.392,0.424]	chr3	202168	41	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	27	2	2.20045	2.637655	3.07486	4.03557e-4	2.01943e-7	0.0138446	1.63383e-5
chr3	23258163	23258263	1786317	0	+	0.42	(0.392,0.424]	chr3	183394	405	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6:ENST00000427371.3:ENST00000628311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	11	2	2.63664	2.63751	2.63838	0.00636373	0.00277883	0.114061	0.0657788
chr6	38522548	38522648	4055166	0	-	0.42	(0.392,0.424]	chr6	369512	176	INTRON	INTRON	BTBD9	ENSG00000183826.18	ENST00000481247.6:ENST00000314100.10:ENST00000649492.1:ENST00000419706.6:ENST00000328403.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	15	2	2.58183	2.6361	2.69037	0.00150665	5.7925e-4	0.0395097	0.0183593
chr1	67430357	67430415	646175	0	-	0.672414	(0.629,1]	chr1	71822	2	UTR5	UTR5:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.66759	2.634805	3.60202	0.0120079	1.20607e-4	0.192421	0.00489816
chr1	117460550	117460612	272251	0	+	0.451613	(0.424,0.459]	chr1	28106	2	CDS	CDS:EXON_MRNA	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	11	17	2	2.23031	2.6344399999999997	3.03857	8.60464e-4	5.63002e-4	0.024764	0.0178211
chr1	28507267	28507365	89663	0	+	0.326531	(0.32,0.36]	chr1	9743	8	INTRON	INTRON	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10	protein_coding	protein_coding	protein_coding	protein_coding	12	15	2	2.50005	2.634105	2.76816	0.00342067	1.33623e-4	0.074991	0.00536744
chr2	69129818	69129917	1064190	0	+	0.434343	(0.424,0.459]	chr2	113069	48	INTRON	INTRON	ANTXR1	ENSG00000169604.21	ENST00000303714.9:ENST00000409829.7:ENST00000409349.7:ENST00000681816.1:ENST00000482235.2:ENST00000679548.1	protein_coding	protein_coding	protein_coding	protein_coding	13	20	2	1.92617	2.633575	3.34098	0.00403396	6.42672e-6	0.0817225	3.74918e-4
chr17	46311184	46311275	8950039	0	-	0.505495	(0.49,0.526]	chr17	860919	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ARL17B	ENSG00000228696.10	ENST00000570618.5:ENST00000656849.1:ENST00000434041.6:ENST00000572991.5:ENST00000622877.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	14	2	2.28648	2.633365	2.98025	0.00563369	0.00137414	0.104784	0.0360194
chr15	48744895	48744992	8155521	0	-	0.28866000000000003	[0,0.32]	chr15	756158	1	CDS	CDS:EXON_MRNA	CEP152	ENSG00000103995.14	ENST00000380950.7:ENST00000399334.7:ENST00000325747.9	protein_coding	protein_coding	protein_coding	protein_coding	31	35	2	2.3455	2.63294	2.92038	2.4536e-5	2.48119e-9	0.00121606	2.76845e-7
chr12	132741418	132741485	7325329	0	-	0.358209	(0.32,0.36]	chr12	677047	1	CDS	CDS:UTR3:EXON_MRNA	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	19	2	2.58675	2.632345	2.67794	4.63564e-4	5.69726e-5	0.0152502	0.00258322
chr7	128338725	128338801	4841202	0	-	0.407895	(0.392,0.424]	chr7	433591	1	CDS	CDS:EXON_MRNA:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000478061.5:ENST00000459726.1	protein_coding	protein_coding	protein_coding	protein_coding	14	20	2	2.40632	2.632	2.85768	3.67029e-4	6.27975e-5	0.0124309	0.00278264
chrX	130750683	130750783	10431712	0	-	0.42	(0.392,0.424]	chrX	1034764	410	INTRON	INTRON	ENOX2	ENSG00000165675.19	ENST00000338144.8:ENST00000394363.6:ENST00000370935.5:ENST00000686943.1:ENST00000432489.5:ENST00000492263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	20	2	2.40632	2.632	2.85768	3.67029e-4	6.27975e-5	0.0124309	0.00278264
chr7	92070956	92071009	4470162	0	+	0.415094	(0.392,0.424]	chr7	401398	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000674381.2:ENST00000359028.7:ENST00000491695.2:ENST00000681216.1:ENST00000680365.1:ENST00000394534.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	34	2	2.3139	2.63105	2.9482	1.21748e-5	8.04921e-8	6.43198e-4	7.02696e-6
chr1	20841826	20841926	534369	0	-	0.54	(0.526,0.57]	chr1	58886	4	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000435383.2:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	15	2	2.30916	2.63029	2.95142	0.0104445	2.97995e-4	0.170894	0.0105806
chr6	31760089	31760152	3755435	0	+	0.539683	(0.526,0.57]	chr6	341714	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MSH5	ENSG00000204410.16	ENST00000375755.8:ENST00000375750.9:ENST00000650702.1:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000395853.5:ENST00000494646.1:ENST00000484309.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	15	2	2.38516	2.62989	2.87462	0.00834853	4.22914e-4	0.145988	0.0140492
chr2	186508554	186508633	1231131	0	+	0.493671	(0.49,0.526]	chr2	129137	1	CDS	CDS:UTR3:EXON_MRNA	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000498757.1:ENST00000445547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	65	2	2.23203	2.62879	3.02555	2.94379e-9	1.79216e-10	3.24078e-7	2.3359e-8
chr6	56611596	56611696	4091976	0	-	0.31	[0,0.32]	chr6	372943	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5	protein_coding	protein_coding	protein_coding	protein_coding	9	11	2	2.58115	2.628435	2.67572	0.00446905	0.00263617	0.0902927	0.0633023
chr17	28720005	28720030	8685331	0	+	0.56	(0.526,0.57]	chr17	822040	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	50	102	2	2.09887	2.6275449999999996	3.15622	6.49155e-10	1e-12	7.81777e-8	1.73382e-10
chr10	119050674	119050774	6271897	0	-	0.43	(0.424,0.459]	chr10	561041	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	25	39	2	2.54798	2.625725	2.70347	2.2499e-6	3.78694e-8	1.44886e-4	3.5018e-6
chr7	92079956	92080054	4470256	0	+	0.265306	[0,0.32]	chr7	401416	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000674381.2:ENST00000359028.7:ENST00000491695.2:ENST00000681216.1:ENST00000680365.1:ENST00000394534.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	12	2	1.98396	2.624285	3.26461	0.0114277	4.77035e-4	0.183154	0.0156573
chr15	99257722	99257821	8096719	0	+	0.393939	(0.392,0.424]	chr15	748691	12	INTRON	INTRON	LRRC28	ENSG00000168904.15	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	13	2	2.35343	2.62326	2.89309	0.00278175	0.00168714	0.0657948	0.0424371
chr5	140527000	140527074	3337747	0	+	0.418919	(0.392,0.424]	chr5	306396	2	CDS	CDS:EXON_MRNA	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	9	13	2	2.13674	2.623125	3.10951	0.0089511	4.28069e-4	0.155806	0.0141511
chrM	6964	7060	10480447	0	+	0.4375	(0.424,0.459]	chrM	1038991	11	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	18	27	2	2.27122	2.622715	2.97421	6.44844e-5	6.11097e-6	0.00284681	3.53451e-4
chr20	62859363	62859444	9777730	0	-	0.382716	(0.36,0.392]	chr20	969537	1	CDS	CDS:EXON_MRNA	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	28	35	2	2.27566	2.62219	2.96872	2.51487e-5	6.74774e-9	0.00124477	7.08202e-7
chr15	31631582	31631682	8118377	0	-	0.46	(0.459,0.49]	chr15	751181	610	INTRON	INTRON	OTUD7A	ENSG00000169918.10	ENST00000307050.6:ENST00000560598.2:ENST00000678495.1:ENST00000560536.5:ENST00000558371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	12	2	1.93103	2.62186	3.31269	0.0116056	0.00308309	0.18628	0.0699986
chr16	2756882	2756971	8304804	0	+	0.426966	(0.424,0.459]	chr16	773103	3	SS5_PROX	SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	43	2	2.56113	2.620675	2.68022	2.67446e-6	2.00851e-9	1.69012e-4	2.26064e-7
chr3	143028482	143028564	2036658	0	+	0.414634	(0.392,0.424]	chr3	203578	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	84	111	2	2.61515	2.620375	2.6256	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	49389928	49390028	6903164	0	+	0.35	(0.32,0.36]	chr12	629135	24	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	31	2	2.57478	2.6191500000000003	2.66352	2.46148e-6	1.56385e-6	1.55994e-4	1.03058e-4
chrX	154358883	154358983	10464176	0	-	0.6	(0.57,0.629]	chrX	1037406	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	22	2	1.87014	2.618685	3.36723	0.0129867	3.34118e-6	0.197645	2.05457e-4
chr7	66694283	66694383	4401977	0	+	0.49	(0.459,0.49]	chr7	396635	87	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	10	22	2	2.13538	2.61716	3.09894	0.0128493	5.36355e-7	0.195714	3.93868e-5
chr1	206360966	206361066	413043	0	+	0.4	(0.392,0.424]	chr1	44462	176	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2:ENST00000604133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	22	2	1.74925	2.6167	3.48415	0.00918152	1.71668e-7	0.15935	1.4146e-5
chr5	146144537	146144623	3634060	0	-	0.348837	(0.32,0.36]	chr5	330090	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	31	2	2.33844	2.61627	2.8941	1.92692e-4	8.00889e-9	0.0071812	8.29473e-7
chr11	57308983	57309081	6607073	0	-	0.540816	(0.526,0.57]	chr11	601801	7	CDS	CDS:UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	46	2	2.47072	2.6162549999999998	2.76179	2.00382e-7	1.26354e-7	1.60882e-5	1.05283e-5
chr3	149644186	149644286	2470798	0	-	0.4	(0.392,0.424]	chr3	236997	681	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	11	16	2	2.46166	2.615925	2.77019	0.00113806	4.137e-4	0.030384	0.0139193
chr8	42439517	42439585	5162685	0	-	0.544118	(0.526,0.57]	chr8	462516	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520262.6:ENST00000520179.5:ENST00000518660.5:ENST00000522401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	25	2	2.48416	2.6158200000000003	2.74748	5.96893e-4	1.18371e-5	0.01884	6.49715e-4
chr15	69438247	69438326	8024378	0	+	0.303797	[0,0.32]	chr15	741776	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000559279.6:ENST00000558585.5:ENST00000559456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	32	2	2.10397	2.614115	3.12426	8.22775e-5	1.03406e-8	0.00351856	1.04853e-6
chr11	694895	694947	6533843	0	-	0.711538	(0.629,1]	chr11	593080	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	DEAF1	ENSG00000177030.19	ENST00000382409.4:ENST00000685854.1:ENST00000683307.1:ENST00000690068.1:ENST00000692634.1:ENST00000687329.1:ENST00000686001.1:ENST00000689835.1:ENST00000530813.2:ENST00000693164.1:ENST00000529717.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	37	2	2.27438	2.61386	2.95334	1.40053e-4	3.94379e-6	0.00551953	2.40581e-4
chr12	2888179	2888269	6803679	0	+	0.466667	(0.459,0.49]	chr12	620894	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RHNO1:TULP3	ENSG00000171792.11:ENSG00000078246.17	ENST00000618250.4:ENST00000461997.5:ENST00000464682.2:ENST00000540184.5:ENST00000489288.7:ENST00000623153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	21	36	2	2.04818	2.61381	3.17944	4.43226e-5	1.02812e-7	0.00205098	8.64157e-6
chr17	67826061	67826141	8787535	0	+	0.65	(0.629,1]	chr17	835906	4	CDS	CDS:UTR5:EXON_MRNA	BPTF	ENSG00000171634.19	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1	protein_coding	protein_coding	protein_coding	protein_coding	13	48	2	2.57917	2.6132299999999997	2.64729	7.15954e-6	4.05101e-7	4.15185e-4	3.07321e-5
chr1	92274839	92274939	689982	0	-	0.47	(0.459,0.49]	chr1	74988	28	INTRON	INTRON	GLMN	ENSG00000174842.17	ENST00000370360.8:ENST00000495106.5:ENST00000463560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	11	2	2.55849	2.612655	2.66682	0.00873764	0.00493064	0.144342	0.0964485
chr12	20470798	20470898	6843072	0	+	0.49	(0.459,0.49]	chr12	625044	1002	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	11	2	2.55849	2.612655	2.66682	0.00873764	0.00493064	0.144342	0.0964485
chr6	145908549	145908649	4226821	0	-	0.31	[0,0.32]	chr6	384046	54	UTR3	UTR3:EXON_MRNA:INTRON	SHPRH	ENSG00000146414.17	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	23	2	2.08451	2.611905	3.1393	4.83239e-4	2.36057e-6	0.0158464	1.53002e-4
chr2	182297706	182297806	1635198	0	-	0.46	(0.459,0.49]	chr2	168577	329	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	11	2	2.47473	2.6116650000000003	2.7486	0.00700666	0.00637649	0.12393	0.114061
chr12	71659390	71659489	7210357	0	-	0.434343	(0.424,0.459]	chr12	665080	17	INTRON	INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1:ENST00000552037.1:ENST00000548100.1:ENST00000549407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	18	2	2.51665	2.61061	2.70457	0.00118296	1.39147e-4	0.0314755	0.00558305
chrX	17472210	17472310	10092026	0	+	0.45	(0.424,0.459]	chrX	1006577	955	INTRON	INTRON	NHS	ENSG00000188158.17	ENST00000676302.1:ENST00000380060.7	protein_coding	protein_coding	protein_coding	protein_coding	9	15	2	2.60189	2.610055	2.61822	0.00187347	7.81679e-4	0.0464423	0.0230767
chr13	95822953	95823052	7553639	0	-	0.292929	[0,0.32]	chr13	694647	208	INTRON	INTRON	UGGT2	ENSG00000102595.21	ENST00000376747.8	protein_coding	protein_coding	protein_coding	protein_coding	13	15	2	1.98396	2.609895	3.23583	0.0114277	2.48754e-5	0.183154	0.00122627
chr19	1020996	1021087	9401146	0	-	0.769231	(0.629,1]	chr19	918513	1	UTR5	UTR5:EXON_MRNA	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000333175.9:ENST00000356663.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	2.30549	2.6096899999999996	2.91389	0.00130525	5.22361e-4	0.0348502	0.0167376
chr1	156320931	156321025	781045	0	-	0.446809	(0.424,0.459]	chr1	86665	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	43	2	2.22599	2.60944	2.99289	2.9486e-6	2.2486e-9	1.82081e-4	2.53141e-7
chr12	20420121	20420221	6842565	0	+	0.41	(0.392,0.424]	chr12	625044	495	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	29	2	2.43807	2.6090600000000004	2.78005	4.10358e-5	1.00598e-6	0.00194446	7.0373e-5
chr15	88470441	88470540	8073730	0	+	0.464646	(0.459,0.49]	chr15	746264	9	INTRON	INTRON	MRPS11	ENSG00000181991.16	ENST00000560708.5:ENST00000557974.5:ENST00000559323.5:ENST00000325844.9:ENST00000560850.1:ENST00000353598.6:ENST00000558406.5:ENST00000559557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	29	2	1.9513	2.609	3.2667	0.00191547	4.66168e-8	0.0472985	4.18548e-6
chr14	102010881	102010952	7756628	0	+	0.408451	(0.392,0.424]	chr14	712095	3	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	24	2	2.2514	2.6085149999999997	2.96563	6.49696e-4	1.50924e-6	0.0196104	9.98059e-5
chr18	21320092	21320192	9071987	0	+	0.36	(0.32,0.36]	chr18	876596	773	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	10	2	2.36247	2.60565	2.84883	0.00885949	0.00354866	0.154729	0.0776459
chr6	130956385	130956485	4198022	0	-	0.42	(0.392,0.424]	chr6	381797	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000639623.1:ENST00000530148.5:ENST00000528179.5:ENST00000526333.1:ENST00000529709.1:ENST00000532499.1:ENST00000526983.1:ENST00000531356.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	26	2	2.54365	2.60439	2.66513	3.3457e-5	1.24799e-5	0.00159406	6.58776e-4
chr6	56532343	56532426	4091147	0	-	0.421687	(0.392,0.424]	chr6	372787	1	CDS	CDS:EXON_MRNA	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	14	20	2	2.46166	2.603895	2.74613	0.00113806	2.03751e-5	0.030384	0.00103923
chr19	43973640	43973740	9356027	0	+	0.42	(0.392,0.424]	chr19	909825	52	INTRON	INTRON	ZNF155	ENSG00000204920.11	ENST00000590411.5	protein_coding	protein_coding	protein_coding	protein_coding	20	28	2	2.3866	2.603645	2.82069	2.09395e-4	3.01287e-7	0.00773314	2.31275e-5
chr1	28536261	28536321	89972	0	+	0.466667	(0.459,0.49]	chr1	9819	1	CDS	CDS:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000683442.1:ENST00000373833.10:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000430407.1:ENST00000478232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	17	2	2.13538	2.6033299999999997	3.07128	0.0128493	3.09793e-5	0.195714	0.0014948
chr12	4340549	4340649	6807916	0	+	0.37	(0.36,0.392]	chr12	621196	30	INTRON	INTRON	TIGAR	ENSG00000078237.7	ENST00000635110.1:ENST00000179259.6:ENST00000537251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	11	2	2.43333	2.603095	2.77286	0.00865969	0.00178276	0.143462	0.0462639
chr12	104315376	104315476	7003094	0	+	0.38	(0.36,0.392]	chr12	640215	2	SS3_PROX	SS3_PROX:INTRON	TXNRD1	ENSG00000198431.17	ENST00000525566.6:ENST00000526266.5:ENST00000503506.6:ENST00000526691.5:ENST00000531691.5:ENST00000526390.5:ENST00000531689.5:ENST00000529546.5:ENST00000529751.1:ENST00000526580.5:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	11	2	2.43333	2.603095	2.77286	0.00865969	0.00178276	0.143462	0.0462639
chr3	178985364	178985464	2500570	0	-	0.47	(0.459,0.49]	chr3	239303	25	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1	protein_coding	protein_coding	protein_coding	protein_coding	18	34	2	2.47869	2.603015	2.72734	2.15584e-5	5.79353e-7	0.00109923	4.22842e-5
chr15	41283989	41284049	7949795	0	+	0.6	(0.57,0.629]	chr15	734610	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	OIP5-AS1	ENSG00000247556.6	ENST00000558945.5:ENST00000558457.5:ENST00000500949.6:ENST00000561275.5:ENST00000560706.5:ENST00000559368.5:ENST00000560545.1:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	7	19	2	2.312	2.60235	2.8927	0.00268566	2.63329e-4	0.063945	0.00943086
chr6	30685248	30685343	4033916	0	-	0.526316	(0.526,0.57]	chr6	365386	7	CDS	CDS:EXON_MRNA:INTRON	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	26	2	2.42474	2.600415	2.77609	1.28531e-4	3.86368e-5	0.00516998	0.00182139
chr17	6583632	6583731	8857598	0	-	0.333333	(0.32,0.36]	chr17	846860	34	INTRON	INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000576281.5:ENST00000570790.5:ENST00000572370.5:ENST00000542826.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	20	2	2.59526	2.60028	2.6053	2.46706e-4	6.25679e-5	0.00892395	0.00277665
chr14	23059322	23059398	7777155	0	-	0.618421	(0.57,0.629]	chr14	715950	2	CDS	CDS:UTR3:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	160	373	2	2.47774	2.6002099999999997	2.72268	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	3092254	3092353	3689013	0	+	0.69697	(0.629,1]	chr6	336216	14	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000676758.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1:ENST00000679335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	41	2	2.42924	2.59905	2.76886	1.15201e-4	6.15025e-7	0.00469392	4.46141e-5
chr6	165836395	165836495	4269110	0	-	0.53	(0.526,0.57]	chr6	386909	73	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	60	2	2.58984	2.597555	2.60527	7.93906e-9	9.73087e-10	8.22505e-7	1.15201e-7
chr11	65499671	65499770	6416238	0	+	0.30303	[0,0.32]	chr11	577204	21	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1:ENST00000544868.2:ENST00000617791.1:ENST00000620902.1	lncRNA	lncRNA	lncRNA	lncRNA	51544	53020	2	2.57535	2.59489	2.61443	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	132616002	132616066	3318630	0	+	0.3125	[0,0.32]	chr5	304448	1	CDS	CDS:UTR3:EXON_MRNA	RAD50	ENSG00000113522.14	ENST00000533482.5:ENST00000378823.8:ENST00000651723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	52	55	2	2.28712	2.590795	2.89447	6.5168e-8	1.16052e-12	5.67072e-6	1.99818e-10
chr8	23566909	23567005	4949369	0	+	0.489583	(0.459,0.49]	chr8	443281	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	19	2	2.49192	2.59072	2.68952	0.00206127	1.27101e-4	0.0505307	0.00511376
chr5	132589630	132589699	3318345	0	+	0.318841	[0,0.32]	chr5	304368	1	CDS	CDS:UTR3:EXON_MRNA	RAD50	ENSG00000113522.14	ENST00000651541.1:ENST00000533482.5:ENST00000378823.8:ENST00000652016.1:ENST00000651160.1:ENST00000652485.1:ENST00000651723.1:ENST00000423956.5:ENST00000453394.5:ENST00000651658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	23	2	2.25139	2.5887000000000002	2.9260100000000002	4.34572e-4	2.59171e-6	0.0146109	1.64061e-4
chr16	89151027	89151087	8481200	0	+	0.416667	(0.392,0.424]	chr16	792893	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSF3	ENSG00000176715.17	ENST00000317447.9:ENST00000614302.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000537116.5:ENST00000537155.1:ENST00000535176.1:ENST00000393145.5:ENST00000562750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	18	2	2.40632	2.588255	2.77019	4.137e-4	3.67029e-4	0.0139193	0.0124309
chr7	75410898	75410996	4433890	0	+	0.520408	(0.49,0.526]	chr7	398765	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM73:NSUN5P1	ENSG00000178809.12:ENSG00000223705.10	ENST00000430211.5:ENST00000473960.1:ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	13	29	2	1.98487	2.587935	3.191	0.00320158	5.79316e-8	0.0725671	5.08365e-6
chr10	99619248	99619347	6233181	0	-	0.414141	(0.392,0.424]	chr10	557347	50	INTRON	INTRON	SLC25A28	ENSG00000155287.11	ENST00000370495.6:ENST00000434701.5:ENST00000496035.1:ENST00000479722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	28	2	2.50876	2.586945	2.66513	3.3457e-5	3.9053e-6	0.00159406	2.3846e-4
chr15	56400534	56400634	7982830	0	+	0.41	(0.392,0.424]	chr15	738417	23	INTRON	INTRON	TEX9	ENSG00000151575.15	ENST00000560827.6:ENST00000696102.1:ENST00000352903.6:ENST00000537232.5:ENST00000560582.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	38	2	1.92238	2.58631	3.25024	8.47101e-5	6.56023e-10	0.00360319	7.89457e-8
chr8	31073687	31073787	4967150	0	+	0.5	(0.49,0.526]	chr8	444979	50	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000651642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	21	2	2.45274	2.585935	2.71913	0.00122099	1.08652e-4	0.0323167	0.00442392
chrX	85085089	85085189	10172005	0	+	0.27	[0,0.32]	chrX	1013530	103	INTRON	INTRON	APOOL	ENSG00000155008.16	ENST00000373173.7	protein_coding	protein_coding	protein_coding	protein_coding	365	377	2	2.39756	2.5855699999999997	2.77358	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	57023329	57023412	2628899	0	+	0.457831	(0.424,0.459]	chr4	252278	1	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5:ENST00000464918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	15	2	2.38609	2.5852899999999996	2.78449	0.00610401	2.25298e-4	0.111745	0.00827964
chr1	109223877	109223977	251286	0	+	0.36	(0.32,0.36]	chr1	25524	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	75	81	2	2.49114	2.58467	2.6782	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	23477277	23477356	7574488	0	+	0.455696	(0.424,0.459]	chr14	697607	2	CDS	CDS:EXON_MRNA	NGDN	ENSG00000129460.16	ENST00000397154.7:ENST00000408901.8:ENST00000553439.5:ENST00000556483.5:ENST00000556022.3:ENST00000556580.4:ENST00000556103.1:ENST00000556699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	30	2	2.4615	2.584605	2.70771	9.48577e-6	7.05327e-6	5.29147e-4	4.0917e-4
chr1	198215537	198215636	390175	0	+	0.343434	(0.32,0.36]	chr1	41972	66	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5:ENST00000544035.5:ENST00000417895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	9	2	2.51516	2.584485	2.65381	0.0110381	0.0069482500000000004	0.179068	0.121182
chr21	44801748	44801826	9886068	0	-	0.769231	(0.629,1]	chr21	980752	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000497630.5:ENST00000477954.5:ENST00000491513.5:ENST00000330942.9:ENST00000478200.1:ENST00000497664.5:ENST00000462569.5:ENST00000490450.5:ENST00000490091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	20	2	2.53295	2.58378	2.63461	0.0028169	0.00110765	0.0647686	0.0305163
chr9	34214112	34214212	5370285	0	+	0.32	[0,0.32]	chr9	479449	345	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	31	30	2	1.61924	2.582305	3.54537	0.00241486	7.4372e-10	0.0584003	8.95397e-8
chr6	136389435	136389517	4209240	0	-	0.512195	(0.49,0.526]	chr6	383023	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000544465.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	131	258	2	2.40451	2.5818849999999998	2.75926	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	5488195	5488293	8637825	0	+	0.418367	(0.392,0.424]	chr17	816040	1	UTR5	UTR5:EXON_MRNA:INTRON	MIS12	ENSG00000167842.16	ENST00000576988.1:ENST00000576570.5:ENST00000573759.1:ENST00000611091.5:ENST00000381165.3	protein_coding	protein_coding	protein_coding	protein_coding	29	39	2	1.87305	2.581845	3.29064	3.93634e-4	1.96635e-11	0.0135724	2.90009e-9
chr22	35265307	35265406	9936807	0	+	0.353535	(0.32,0.36]	chr22	987285	6	CDS	CDS:UTR3:EXON_MRNA	HMGXB4	ENSG00000100281.14	ENST00000420166.5:ENST00000418170.5:ENST00000216106.6:ENST00000455359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	41	45	2	2.44127	2.5816049999999997	2.72194	6.56436e-8	4.29937e-9	5.71057e-6	4.63706e-7
chr18	21320192	21320292	9071988	0	+	0.33	(0.32,0.36]	chr18	876596	774	INTRON	INTRON	GREB1L	ENSG00000141449.16	ENST00000424526.7:ENST00000584446.5:ENST00000579454.2:ENST00000269218.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	25	2	2.27823	2.580965	2.8837	6.22237e-5	8.61466e-6	0.0027595	4.83538e-4
chr16	16362734	16362822	8339639	0	+	0.715909	(0.629,1]	chr16	777163	2	EXON_PSEUDO	EXON_PSEUDO	PKD1P2	ENSG00000227827.3	ENST00000532739.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	18	2	2.1836700000000002	2.579885	2.9761	0.00463564	0.00283208	0.089408	0.0662445
chr13	114056248	114056348	7571034	0	-	0.58	(0.57,0.629]	chr13	696782	37	INTRON	INTRON	RASA3	ENSG00000185989.11	ENST00000334062.8	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	2.0516200000000002	2.579835	3.10805	0.0120761	3.71519e-4	0.193138	0.0125602
chr14	23477502	23477568	7574491	0	+	0.409091	(0.392,0.424]	chr14	697609	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NGDN	ENSG00000129460.16	ENST00000397154.7:ENST00000408901.8:ENST00000553439.5:ENST00000556483.5:ENST00000556022.3:ENST00000556580.4:ENST00000556103.1:ENST00000556699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	24	2	2.35665	2.576245	2.79584	6.8706e-5	3.58517e-5	0.00299946	0.00172112
chr21	16392783	16392882	9788824	0	+	0.373737	(0.36,0.392]	chr21	970624	7	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000602935.6:ENST00000602580.6:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000658518.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000670003.1:ENST00000400178.7:ENST00000456342.6:ENST00000657408.1:ENST00000670446.1:ENST00000661148.1:ENST00000666636.1:ENST00000671666.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000670045.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000654997.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000666994.1:ENST00000671437.1:ENST00000666701.1:ENST00000654176.1:ENST00000413645.2:ENST00000665555.1:ENST00000602505.6:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000655866.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000662622.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1	lncRNA	lncRNA	lncRNA	lncRNA	9	12	2	2.24636	2.57594	2.90552	0.0120388	6.04072e-4	0.192743	0.0189985
chr4	56491430	56491499	2627476	0	+	0.362319	(0.36,0.392]	chr4	252058	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000646579.1:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	12	2	2.24636	2.57594	2.90552	0.0120388	6.04072e-4	0.192743	0.0189985
chrM	647	742	10480388	0	+	0.431579	(0.424,0.459]	chrM	1038986	1	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1158	1643	2	2.57179	2.5758900000000002	2.57999	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	120496166	120496251	7032831	0	+	0.682353	(0.629,1]	chr12	644233	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000549649.5:ENST00000548342.5:ENST00000548214.1:ENST00000392508.2:ENST00000550178.1:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000550845.5	protein_coding	protein_coding	protein_coding	protein_coding	16	56	2	2.50117	2.57423	2.64729	4.05101e-7	2.59014e-7	3.07321e-5	2.01469e-5
chr1	161821959	161822059	318380	0	+	0.42	(0.392,0.424]	chr1	36088	4	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	9	2	2.38155	2.574055	2.76656	0.0113141	0.00993679	0.181488	0.169739
chr6	165605167	165605266	4266783	0	-	0.424242	(0.392,0.424]	chr6	386853	45	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000647837.1:ENST00000647989.1:ENST00000539869.4:ENST00000647590.1:ENST00000648917.1:ENST00000649247.1:ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	9	2	2.38155	2.574055	2.76656	0.0113141	0.00993679	0.181488	0.169739
chr4	73097116	73097194	2915497	0	-	0.435897	(0.424,0.459]	chr4	274382	1	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	21	31	2	2.05873	2.573295	3.08786	2.14537e-4	1.02416e-7	0.00789628	8.70478e-6
chr1	20874435	20874535	534706	0	-	0.31	[0,0.32]	chr1	58945	88	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	20	2	2.47213	2.572265	2.6724	7.51345e-4	1.93659e-5	0.0225125	9.81584e-4
chr12	132926466	132926565	7327207	0	-	0.434343	(0.424,0.459]	chr12	677392	11	CDS	CDS:EXON_MRNA:INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3	protein_coding	protein_coding	protein_coding	protein_coding	38	54	2	2.14589	2.5719450000000004	2.998	3.92629e-7	2.15298e-11	2.95541e-5	3.14887e-9
chr11	65440547	65440647	6416046	0	+	0.53	(0.526,0.57]	chr11	577189	179	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000691530.1:ENST00000693747.1	lncRNA	lncRNA	lncRNA	lncRNA	73	146	2	2.33152	2.5714249999999996	2.81133	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	24173923	24174023	10104625	0	+	0.57	(0.526,0.57]	chrX	1007452	2	SS5_PROX	SS5_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000428571.5:ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000419690.5:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3:ENST00000474385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	12	2	2.38516	2.571015	2.75687	0.00834853	0.00442955	0.145988	0.0875511
chr16	28720943	28721032	8363300	0	+	0.550562	(0.526,0.57]	chr16	779830	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	15	2	1.98407	2.570685	3.1573	0.0117294	4.45312e-4	0.188071	0.0146627
chr14	21262697	21262794	7773334	0	-	0.484536	(0.459,0.49]	chr14	714978	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	27	2	2.43008	2.5705349999999996	2.71099	1.2697e-4	1.5172e-5	0.00503988	7.8707e-4
chr5	72195145	72195244	3210387	0	+	0.515152	(0.49,0.526]	chr5	296335	14	CDS	CDS:UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	12	2	2.53273	2.569175	2.60562	0.0102832	0.00358171	0.170122	0.0782109
chr5	78173729	78173829	3510295	0	-	0.48	(0.459,0.49]	chr5	321379	16	UTR3	UTR3:EXON_MRNA:INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1:ENST00000695449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	19	2	2.19746	2.5670200000000003	2.93658	0.00223761	1.04307e-4	0.0546112	0.00432201
chr1	220200122	220200222	862799	0	-	0.48	(0.459,0.49]	chr1	95880	29	INTRON	INTRON	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000685664.1:ENST00000690824.1:ENST00000687394.1:ENST00000690379.1:ENST00000478976.1:ENST00000237724.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	19	2	2.34588	2.5669399999999998	2.788	8.10253e-4	3.42937e-4	0.0236684	0.0119676
chr1	26697351	26697445	83451	0	+	0.819149	(0.629,1]	chr1	8850	10	CDS	CDS:EXON_MRNA:INTRON	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.36786	2.5667	2.76554	0.0112307	0.011144	0.181488	0.179068
chr16	88785134	88785220	8620917	0	-	0.813953	(0.629,1]	chr16	813382	3	UTR5	UTR5:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.36786	2.5667	2.76554	0.0112307	0.011144	0.181488	0.179068
chrX	80677082	80677175	10386184	0	-	0.397849	(0.392,0.424]	chrX	1030733	5	CDS	CDS:EXON_MRNA	BRWD3	ENSG00000165288.11	ENST00000373275.5	protein_coding	protein_coding	protein_coding	protein_coding	17	23	2	2.46765	2.56639	2.66513	1.34747e-4	3.3457e-5	0.00541124	0.00159406
chr13	45975467	45975560	7515416	0	-	0.537634	(0.526,0.57]	chr13	691139	3	CDS	CDS:EXON_MRNA	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	50	99	2	2.36927	2.565865	2.76246	2.53608e-12	1e-12	4.21104e-10	1.72912e-10
chr11	116954043	116954107	6750682	0	-	0.40625	(0.392,0.424]	chr11	616019	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000413553.1:ENST00000497049.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	17	2	2.27351	2.565595	2.85768	0.00368786	6.27975e-5	0.0804935	0.00278264
chr1	148534683	148534769	757250	0	-	0.523256	(0.49,0.526]	chr1	81704	1	CDS	CDS:EXON_MRNA:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.41199	2.5655599999999996	2.71913	0.00770591	0.00122099	0.135524	0.0323167
chrX	73969677	73969776	10164085	0	+	0.50505	(0.49,0.526]	chrX	1012998	13	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	6	14	2	2.41199	2.5655599999999996	2.71913	0.00770591	0.00122099	0.135524	0.0323167
chr5	132566229	132566328	3318104	0	+	0.40404	(0.392,0.424]	chr5	304335	65	INTRON	INTRON	RAD50	ENSG00000113522.14	ENST00000416135.5:ENST00000651541.1:ENST00000533482.5:ENST00000378823.8:ENST00000652016.1:ENST00000651160.1:ENST00000652485.1:ENST00000651723.1:ENST00000423956.5:ENST00000453394.5:ENST00000651658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	10	2	2.2858	2.5642899999999997	2.84278	0.00949728	0.00667435	0.16275	0.116637
chr9	106865954	106866054	5459502	0	+	0.41	(0.392,0.424]	chr9	487697	22	INTRON	INTRON	ZNF462	ENSG00000148143.13	ENST00000277225.10:ENST00000472574.1	protein_coding	protein_coding	protein_coding	protein_coding	7	10	2	2.2858	2.5642899999999997	2.84278	0.00949728	0.00667435	0.16275	0.116637
chr19	54458167	54458232	9386759	0	+	0.507692	(0.49,0.526]	chr19	915847	2	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	102	197	2	2.51841	2.564185	2.60996	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	148123731	148123831	1165198	0	+	0.43	(0.424,0.459]	chr2	123785	518	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	15	2	1.90168	2.5641	3.22652	0.0110992	1.43888e-4	0.181121	0.00569484
chr13	33912491	33912591	7353048	0	+	0.55	(0.526,0.57]	chr13	679621	751	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	8	18	2	2.44587	2.5636850000000004	2.6815	0.00220059	3.72283e-4	0.0550857	0.0125803
chr7	149624681	149624752	4885806	0	-	0.760563	(0.629,1]	chr7	437279	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000513792.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	20	2	2.47168	2.56323	2.65478	0.00639682	4.80586e-4	0.114061	0.015761
chr8	11325268	11325367	4929699	0	+	0.363636	(0.36,0.392]	chr8	440546	26	UTR3	UTR3:EXON_MRNA	MTMR9	ENSG00000104643.10	ENST00000221086.8	protein_coding	protein_coding	protein_coding	protein_coding	11	14	2	2.40608	2.562635	2.71919	0.00230379	9.0344e-4	0.0561481	0.025497
chr2	121731033	121731104	1557218	0	-	0.338028	(0.32,0.36]	chr2	161462	3	CDS	CDS:EXON_MRNA	NIFK	ENSG00000155438.12	ENST00000285814.9:ENST00000481978.5:ENST00000447132.5:ENST00000451734.1:ENST00000477693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	19	2	2.11934	2.561935	3.00453	0.00476914	3.97238e-6	0.0913331	2.42142e-4
chrX	72333258	72333357	10369548	0	-	0.484848	(0.459,0.49]	chrX	1029619	20	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650477.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	14	2	2.35017	2.5618999999999996	2.77363	0.00454135	0.00152008	0.0879706	0.0397018
chr19	3053818	3053886	9409802	0	-	0.558824	(0.526,0.57]	chr19	920153	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000592414.1:ENST00000586742.5:ENST00000587393.5:ENST00000592330.5:ENST00000590067.5:ENST00000586839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	14	2	2.52322	2.561395	2.59957	0.00370126	0.00283719	0.0806443	0.0662445
chr10	5714903	5715001	5778736	0	+	0.44898	(0.424,0.459]	chr10	520625	3	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	11	2	2.11318	2.55999	3.0068	0.0111807	0.00341471	0.181488	0.0729529
chr17	50998530	50998617	8964497	0	-	0.45977	(0.459,0.49]	chr17	862846	2	CDS	CDS:EXON_MRNA	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000513827.5:ENST00000515685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	46	2	2.51726	2.5593500000000002	2.60144	3.4919e-7	4.13597e-8	2.68043e-5	3.74186e-6
chr11	12711127	12711227	6325267	0	+	0.57	(0.526,0.57]	chr11	567852	352	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	30	60	2	2.55805	2.55812	2.55819	2.5806e-8	5.68065e-10	2.43769e-6	6.93464e-8
chr1	162747601	162747701	321950	0	+	0.45	(0.424,0.459]	chr1	36331	281	INTRON	INTRON	DDR2	ENSG00000162733.19	ENST00000446985.6:ENST00000671979.1:ENST00000415555.5:ENST00000672207.1:ENST00000367921.8:ENST00000367922.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	16	2	2.43027	2.55648	2.68269	0.00260728	3.61318e-4	0.0623742	0.0122472
chr10	61917900	61918000	5867752	0	+	0.53	(0.526,0.57]	chr10	526527	151	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	2.53343	2.556445	2.57946	0.0110174	0.00106428	0.179063	0.0286011
chrX	68206757	68206842	10366251	0	-	0.552941	(0.526,0.57]	chrX	1029216	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000467444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	14	2	2.53343	2.556445	2.57946	0.0110174	0.00106428	0.179063	0.0286011
chr9	134772789	134772834	5525054	0	+	0.6	(0.57,0.629]	chr9	496601	1	CDS	CDS:EXON_MRNA	COL5A1	ENSG00000130635.16	ENST00000371817.8:ENST00000618395.4	protein_coding	protein_coding	protein_coding	protein_coding	13	30	2	2.08156	2.556385	3.03121	3.01663e-4	7.39885e-6	0.0107025	4.2522e-4
chr15	56125517	56125617	8182840	0	-	0.37	(0.36,0.392]	chr15	759035	215	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	17	2	2.20502	2.55527	2.90552	6.12408e-4	6.04072e-4	0.0189985	0.0189815
chr1	155051465	155051561	305664	0	+	0.666667	(0.629,1]	chr1	33157	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADAM15	ENSG00000143537.14	ENST00000473905.6:ENST00000533732.5:ENST00000480331.5:ENST00000527418.5:ENST00000355956.6:ENST00000359280.8:ENST00000360674.8:ENST00000368412.7:ENST00000449910.6:ENST00000526491.5:ENST00000529473.5:ENST00000531703.5:ENST00000477533.5:ENST00000271836.10:ENST00000461564.6:ENST00000356955.7:ENST00000368413.5:ENST00000485346.6:ENST00000487956.6:ENST00000531455.5:ENST00000531831.5:ENST00000447332.3:ENST00000472434.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	43	2	2.07777	2.55474	3.03171	3.81141e-4	8.34956e-8	0.013195	7.25942e-6
chr1	235196030	235196115	890554	0	-	0.305882	[0,0.32]	chr1	99215	1	CDS	CDS:EXON_MRNA	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	39	2	2.22392	2.55411	2.8843	1.28459e-5	8.33902e-10	6.75876e-4	9.96447e-8
chr14	69885517	69885606	7859948	0	-	0.539326	(0.526,0.57]	chr14	723882	3	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	41	81	2	2.54069	2.5516199999999998	2.56255	1.25426e-11	8.9837e-12	1.91829e-9	1.38813e-9
chr11	62610878	62610935	6616135	0	-	0.614035	(0.57,0.629]	chr11	603759	1	CDS	CDS:UTR5:EXON_MRNA	EML3	ENSG00000149499.12	ENST00000394773.7:ENST00000278845.8:ENST00000394776.8:ENST00000529309.5:ENST00000494176.6:ENST00000531557.5:ENST00000494448.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	23	2	2.45958	2.551285	2.64299	0.00105573	8.7111e-5	0.0283868	0.00370687
chr6	52282652	52282721	4083192	0	-	0.550725	(0.526,0.57]	chr6	372013	1	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	7	13	2	1.9397	2.548865	3.15803	0.00829429	0.00482649	0.145308	0.0920354
chr2	54529314	54529414	1033858	0	+	0.47	(0.459,0.49]	chr2	110784	7	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	7	14	2	2.22001	2.548225	2.87644	0.0100465	6.44081e-4	0.170122	0.0194527
chr4	82900149	82900223	2935692	0	-	0.554054	(0.526,0.57]	chr4	276092	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SEC31A:THAP9-AS1	ENSG00000138674.17:ENSG00000251022.6	ENST00000355196.6:ENST00000503210.5:ENST00000507676.5:ENST00000506495.5:ENST00000507051.1:ENST00000504520.6:ENST00000504792.6:ENST00000512932.5:ENST00000511271.5:ENST00000508772.5:ENST00000513581.5:ENST00000504718.5:ENST00000505028.5:ENST00000507660.5:ENST00000509007.1:ENST00000504869.1:ENST00000503704.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	14	2	2.30916	2.547675	2.78619	0.0104445	9.32195e-4	0.170894	0.0262648
chr11	77886512	77886612	6456366	0	+	0.46	(0.459,0.49]	chr11	583468	12	INTRON	INTRON	AAMDC	ENSG00000087884.15	ENST00000532481.5:ENST00000526164.5:ENST00000527134.5:ENST00000304716.12:ENST00000630098.2:ENST00000529666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	82	139	2	2.50366	2.546995	2.59033	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	48139970	48140056	9520572	0	-	0.662791	(0.629,1]	chr19	939880	1	CDS	CDS:EXON_MRNA	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000542460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	1.76961	2.546175	3.32274	0.0124161	7.60906e-4	0.197977	0.0223166
chr14	102994969	102995069	7917342	0	-	0.33	(0.32,0.36]	chr14	730085	80	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7:ENST00000558321.5:ENST00000561271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	15	2	2.29248	2.545035	2.79759	0.00294273	2.77506e-4	0.0674382	0.00987376
chr2	39041677	39041777	1423821	0	-	0.32	[0,0.32]	chr2	148217	58	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000472480.2:ENST00000690679.1:ENST00000461545.2:ENST00000685782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	31	2	2.16885	2.5446150000000003	2.92038	6.52615e-4	2.48119e-9	0.0196925	2.76845e-7
chr6	31539146	31539210	4034917	0	-	0.546875	(0.526,0.57]	chr6	365741	1	CDS	CDS:EXON_MRNA:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	32	2	2.24776	2.54343	2.8391	5.67006e-5	4.09991e-6	0.00257126	2.46356e-4
chr19	30012368	30012452	9322412	0	+	0.5	(0.49,0.526]	chr19	903533	2	CDS	CDS:UTR3:EXON_MRNA	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000392271.6:ENST00000574110.5:ENST00000575242.1:ENST00000573052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	120	228	2	2.4941	2.543025	2.59195	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	200957400	200957472	1668753	0	-	0.388889	(0.36,0.392]	chr2	171468	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000467605.5:ENST00000410039.5:ENST00000457595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	40	2	2.28278	2.542735	2.80269	7.36264e-6	2.17512e-9	4.23546e-4	2.44303e-7
chr3	152422571	152422670	2045041	0	+	0.424242	(0.392,0.424]	chr3	204369	71	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	14	2	2.50222	2.5420249999999998	2.58183	0.00201399	0.00150665	0.0494938	0.0395097
chr1	145772977	145773073	748381	0	-	0.302083	[0,0.32]	chr1	80174	12	EXON_MRNA	EXON_MRNA:INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5:ENST00000539368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	49	51	2	2.04232	2.54109	3.03986	5.57124e-6	1e-12	3.26605e-4	1.72912e-10
chr3	128075111	128075210	2429828	0	-	0.414141	(0.392,0.424]	chr3	232835	58	INTRON	INTRON	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	231	291	2	2.30657	2.54094	2.77531	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	33337134	33337194	6367997	0	+	0.316667	[0,0.32]	chr11	570397	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000534262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	14	2	2.28307	2.5408	2.79853	0.0026764	6.68468e-4	0.0634848	0.0200896
chr16	3793385	3793465	8498152	0	-	0.5125	(0.49,0.526]	chr16	796781	1	CDS	CDS:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	8	17	2	2.1024	2.54046	2.97852	0.00578443	2.62984e-4	0.106345	0.00942832
chr17	31177942	31178041	8695361	0	+	0.424242	(0.392,0.424]	chr17	823287	76	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000490416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	35	2	2.32625	2.54027	2.75429	1.31371e-5	1.008e-7	7.05764e-4	8.57648e-6
chr1	220253859	220253955	433961	0	+	0.416667	(0.392,0.424]	chr1	46683	4	EXON_PSEUDO	EXON_PSEUDO	MORF4L1P1	ENSG00000218283.2	ENST00000404582.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	21	2	2.45157	2.539825	2.62808	3.36108e-4	7.42624e-5	0.0114696	0.00320376
chr6	89862710	89862808	3834973	0	+	0.285714	[0,0.32]	chr6	351432	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	34	2	2.23975	2.538495	2.83724	7.94136e-5	4.78051e-9	0.00339189	5.1022100000000005e-07
chr1	153642242	153642295	302302	0	+	0.54717	(0.526,0.57]	chr1	32231	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1:ENST00000368686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	20	2	2.05409	2.5383899999999997	3.02269	0.00236757	1.37862e-4	0.0572654	0.00543389
chr17	6584622	6584721	8857608	0	-	0.40404	(0.392,0.424]	chr17	846860	44	INTRON	INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000576281.5:ENST00000570790.5:ENST00000572370.5:ENST00000542826.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	25	2	2.37031	2.537785	2.70526	1.19792e-4	1.15475e-5	0.00487701	6.15512e-4
chr16	74305572	74305633	8432240	0	+	0.491803	(0.49,0.526]	chr16	790292	2	CDS	CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	113	2	2.32786	2.537425	2.74699	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	39302128	39302188	7608407	0	+	0.416667	(0.392,0.424]	chr14	700065	1	CDS	CDS:EXON_MRNA	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding	40	51	2	2.35456	2.5366350000000004	2.71871	1.698e-7	1.87466e-10	1.40037e-5	2.42852e-8
chr1	6785453	6785530	11892	0	+	0.844156	(0.629,1]	chr1	1842	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	108	2	2.46738	2.53483	2.60228	5.24101e-11	1e-12	7.34473e-9	1.72912e-10
chr3	50090381	50090434	1869434	0	+	0.339623	(0.32,0.36]	chr3	189894	1	UTR3	UTR3:UTR5:EXON_MRNA	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000492472.1:ENST00000437500.5:ENST00000417905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	26	2	2.13653	2.533575	2.93062	2.58185e-4	9.93258e-7	0.00914105	6.97859e-5
chr7	105111917	105112011	4503247	0	+	0.382979	(0.36,0.392]	chr7	405759	2	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	15	2	1.88109	2.529885	3.17868	0.00968735	1.02243e-4	0.159442	0.00424251
chr17	16071493	16071579	8882118	0	-	0.430233	(0.424,0.459]	chr17	849899	2	CDS	CDS:EXON_MRNA:INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395849.6:ENST00000458113.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	31	2	2.14794	2.528655	2.90937	4.91699e-5	1.31823e-6	0.0022552	8.96115e-5
chr14	74798445	74798541	7703134	0	+	0.46875	(0.459,0.49]	chr14	707982	10	CDS	CDS:EXON_MRNA:INTRON	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	78	131	2	2.20227	2.5284199999999997	2.85457	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	71510158	71510257	3208056	0	+	0.434343	(0.424,0.459]	chr5	296025	8	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	60	2	2.38797	2.52767	2.66737	2.67815e-8	1.69617e-11	2.54143e-6	2.54824e-9
chr1	151428328	151428413	766269	0	-	0.552941	(0.526,0.57]	chr1	83604	6	CDS	CDS:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	23	2	1.98407	2.527285	3.0705	0.0117294	1.467e-6	0.188071	9.9496e-5
chr1	151199287	151199387	297151	0	+	0.64	(0.629,1]	chr1	31728	1	SS5_PROX	SS5_PROX:INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	33	2	1.90553	2.525375	3.14522	0.00128938	6.21098e-6	0.0340399	3.62793e-4
chr12	52051401	52051486	6912947	0	+	0.658824	(0.629,1]	chr12	630449	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NR4A1	ENSG00000123358.20	ENST00000360284.7:ENST00000548977.5:ENST00000546842.5:ENST00000545748.5:ENST00000550082.5:ENST00000549102.1:ENST00000478250.1:ENST00000547206.5:ENST00000243050.5:ENST00000394824.2:ENST00000394825.6:ENST00000550763.1:ENST00000548232.1:ENST00000562373.1:ENST00000548733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	32	2	2.51494	2.52471	2.53448	1.96287e-4	6.43738e-5	0.00726075	0.0028427
chr1	145772881	145772977	748380	0	-	0.34375	(0.32,0.36]	chr1	80174	11	EXON_MRNA	EXON_MRNA:INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5:ENST00000539368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	25	2	2.45472	2.52265	2.59058	1.18258e-4	7.97271e-6	0.00476512	4.51843e-4
chr19	13768258	13768358	9294596	0	+	0.44	(0.424,0.459]	chr19	898796	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MRI1	ENSG00000037757.14	ENST00000040663.8:ENST00000319545.12:ENST00000588526.5:ENST00000591688.5:ENST00000593245.5:ENST00000589290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	43	2	1.99387	2.52244	3.0510100000000002	6.13622e-5	1.3906e-10	0.00272354	1.85217e-8
chr15	50494209	50494280	7975958	0	+	0.366197	(0.36,0.392]	chr15	737802	3	CDS	CDS:EXON_MRNA	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9:ENST00000419830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	42	2	2.09537	2.5216000000000003	2.94783	1.23179e-5	4.02955e-10	6.50544e-4	4.99244e-8
chr8	61576771	61576858	5178939	0	-	0.448276	(0.424,0.459]	chr8	464191	1	CDS	CDS:EXON_MRNA	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000524173.5:ENST00000521499.5:ENST00000522349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	43	2	2.15426	2.520305	2.88635	1.38762e-5	1.11525e-9	7.28659e-4	1.3094e-7
chr12	11133765	11133865	7087676	0	-	0.38	(0.36,0.392]	chr12	651870	122	INTRON	INTRON	PRH1:TAS2R14	ENSG00000231887.8:ENSG00000212127.6	ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	processed_transcript	protein_coding	processed_transcript	9	11	2	2.18922	2.520015	2.85081	0.00764253	0.00352888	0.130982	0.0751127
chr6	165954313	165954413	4270297	0	-	0.38	(0.36,0.392]	chr6	386948	40	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	26	2	2.03579	2.519635	3.00348	0.00635025	1.23206e-8	0.114061	1.22782e-6
chr7	80851044	80851144	4755912	0	-	0.44	(0.424,0.459]	chr7	426132	33	INTRON	INTRON	SEMA3C	ENSG00000075223.14	ENST00000265361.8:ENST00000419255.6:ENST00000458729.5:ENST00000411788.5:ENST00000427167.5:ENST00000487621.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	29	2	2.38277	2.5194099999999997	2.65605	2.4512e-5	9.68887e-6	0.00121508	5.37523e-4
chr21	46229705	46229796	9834819	0	+	0.56044	(0.526,0.57]	chr21	975851	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MCM3AP-AS1	ENSG00000215424.10	ENST00000455567.2:ENST00000590829.5:ENST00000669476.1:ENST00000656253.1:ENST00000654493.1:ENST00000591223.5:ENST00000664725.1:ENST00000670190.1:ENST00000414659.5:ENST00000432735.5:ENST00000444998.1:ENST00000421927.1:ENST00000662666.1:ENST00000588753.1:ENST00000420074.1	lncRNA	lncRNA	lncRNA	lncRNA	9	20	2	2.30916	2.519005	2.72885	0.0104445	1.99162e-5	0.170894	0.00101614
chr10	12556755	12556855	5793567	0	+	0.44	(0.424,0.459]	chr10	521729	30	INTRON	INTRON	CAMK1D	ENSG00000183049.14	ENST00000619168.5:ENST00000487696.1:ENST00000378845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	10	2	2.46913	2.518585	2.56804	0.0100222	0.00769936	0.164581	0.135524
chr16	4678266	4678363	8310244	0	+	0.536082	(0.526,0.57]	chr16	774116	3	INTRON	INTRON	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5:ENST00000590790.5:ENST00000591673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	20	2	1.98407	2.517945	3.05182	0.0117294	1.40112e-5	0.188071	7.50732e-4
chr19	35497849	35497933	9480832	0	-	0.488095	(0.459,0.49]	chr19	932738	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DMKN	ENSG00000161249.21	ENST00000339686.8:ENST00000462721.5:ENST00000402589.6:ENST00000488542.6:ENST00000434389.5:ENST00000460327.5:ENST00000408915.6:ENST00000472365.6:ENST00000490622.5:ENST00000488762.5:ENST00000436012.5:ENST00000467532.5:ENST00000414866.6:ENST00000480502.5:ENST00000469960.5:ENST00000467637.5:ENST00000478648.6:ENST00000486756.6:ENST00000484064.5:ENST00000601368.5:ENST00000419602.5:ENST00000429837.5:ENST00000462126.5:ENST00000443640.5:ENST00000597212.5:ENST00000472252.6:ENST00000593342.5:ENST00000601650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	12	2	2.47473	2.51661	2.55849	0.00637649	0.00493064	0.114061	0.0964485
chr17	57446249	57446349	8750364	0	+	0.55	(0.526,0.57]	chr17	833037	11	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	25	2	2.05409	2.5164850000000003	2.97888	0.00236757	4.42989e-6	0.0572654	2.62117e-4
chr19	861956	862056	9258794	0	+	0.73	(0.629,1]	chr19	891507	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CFD	ENSG00000197766.9	ENST00000695942.1:ENST00000695943.1:ENST00000327726.11:ENST00000592860.3:ENST00000695945.1:ENST00000695944.1:ENST00000695946.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.31701	2.51606	2.71511	0.0035501	0.00203575	0.0776459	0.0513388
chr20	58651534	58651629	9682333	0	+	0.610526	(0.57,0.629]	chr20	956380	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000371132.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	17	2	2.27328	2.515655	2.75803	0.0030545	0.00157746	0.0697796	0.0410987
chr4	183886219	183886319	2805989	0	+	0.51	(0.49,0.526]	chr4	265321	320	INTRON	INTRON	STOX2	ENSG00000173320.12	ENST00000513034.3:ENST00000511250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	36	2	1.64708	2.51538	3.38368	0.00663468	1.61208e-10	0.116107	2.1002e-8
chr4	169507036	169507132	3087106	0	-	0.427083	(0.424,0.459]	chr4	285684	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NEK1	ENSG00000137601.18	ENST00000687054.1:ENST00000507142.6:ENST00000686697.1:ENST00000688934.1:ENST00000685111.1:ENST00000687528.1:ENST00000687643.1:ENST00000685677.1:ENST00000439128.6:ENST00000511633.5:ENST00000510533.5:ENST00000512193.5:ENST00000693604.1:ENST00000692450.1:ENST00000687219.1:ENST00000693085.1:ENST00000689190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	28	2	2.36526	2.515235	2.66521	2.91554e-4	1.13142e-6	0.0102737	7.88049e-5
chr12	121810076	121810171	7036248	0	+	0.6	(0.57,0.629]	chr12	644814	6	CDS	CDS:EXON_MRNA	SETD1B	ENSG00000139718.12	ENST00000604567.6:ENST00000542440.5:ENST00000619791.1	protein_coding	protein_coding	protein_coding	protein_coding	10	25	2	2.18215	2.5138350000000003	2.84552	0.00235627	1.14882e-5	0.0567822	6.12557e-4
chr1	27603474	27603553	552744	0	-	0.746835	(0.629,1]	chr1	61340	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHDC1	ENSG00000126705.15	ENST00000247087.10:ENST00000673934.1:ENST00000644989.1:ENST00000374011.6:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000645669.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1:ENST00000646921.1:ENST00000646642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	2.0506	2.5132849999999998	2.97597	0.00602676	2.70404e-5	0.111617	0.00133575
chr10	126970701	126970785	6013905	0	+	0.392857	(0.392,0.424]	chr10	539963	1	CDS	CDS:EXON_MRNA	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	20	24	2	1.87437	2.512145	3.14992	0.00153945	1.8547e-6	0.0401377	1.21588e-4
chr17	50397454	50397523	8963649	0	-	0.753623	(0.629,1]	chr17	862657	3	UTR5	UTR5:EXON_MRNA	LRRC59	ENSG00000108829.10	ENST00000225972.8:ENST00000576448.1	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.47168	2.5117950000000002	2.55191	0.00639682	0.004809	0.114061	0.0964485
chrX	9505840	9505940	10077819	0	+	0.42	(0.392,0.424]	chrX	1005235	36	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	7	10	2	2.38155	2.5099650000000002	2.63838	0.00993679	0.00636373	0.169739	0.114061
chr16	84590115	84590215	8612980	0	-	0.6	(0.57,0.629]	chr16	812351	1	CDS_START	CDS_START:CDS:EXON_MRNA	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000561707.1:ENST00000564662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	38	2	2.32954	2.509325	2.68911	6.10716e-5	4.77481e-7	0.00271102	3.57143e-5
chrM	7585	7685	10480452	0	+	0.44	(0.424,0.459]	chrM	1038992	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	29	41	2	2.41972	2.5090500000000002	2.59838	4.35075e-7	3.01923e-7	3.25209e-5	2.34415e-5
chr5	93856280	93856379	3541481	0	-	0.434343	(0.424,0.459]	chr5	322906	317	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000510445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	25	2	2.0382	2.509045	2.97989	0.0015344	1.23341e-6	0.0400092	8.43441e-5
chr10	101818110	101818199	6238399	0	-	0.696629	(0.629,1]	chr10	558318	2	UTR5	UTR5:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding	15	46	2	2.07389	2.5074199999999998	2.94095	1.3917e-5	3.40484e-6	7.30681e-4	2.10826e-4
chr6	3098759	3098859	3689079	0	+	0.56	(0.526,0.57]	chr6	336220	40	INTRON	INTRON	RIPK1	ENSG00000137275.16	ENST00000678809.1:ENST00000678874.1:ENST00000380409.3:ENST00000677799.1:ENST00000676758.1:ENST00000679118.1:ENST00000479389.1:ENST00000676591.1:ENST00000259808.9:ENST00000677361.1:ENST00000676965.1:ENST00000680389.1:ENST00000679335.1:ENST00000679677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	13	2	2.18204	2.506715	2.83139	0.00795889	0.00350122	0.13377	0.0746524
chrM	12526	12621	10480500	0	+	0.452632	(0.424,0.459]	chrM	1039009	3	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	18	26	2	2.4106	2.50647	2.60234	6.0148e-5	3.05025e-5	0.00268144	0.00149907
chr5	177466910	177466986	3671054	0	-	0.697368	(0.629,1]	chr5	334015	1	CDS	CDS:EXON_MRNA	DBN1	ENSG00000113758.14	ENST00000309007.9:ENST00000393565.6:ENST00000292385.9:ENST00000472831.5:ENST00000477391.6:ENST00000471767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	61	198	2	2.41743	2.50419	2.59095	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	89762637	89762736	5931766	0	+	0.373737	(0.36,0.392]	chr10	531919	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	21	2	2.46776	2.504055	2.54035	1.87242e-4	1.11221e-4	0.00697985	0.00449166
chr14	69767185	69767282	7681510	0	+	0.639175	(0.629,1]	chr14	706155	12	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	63	2	2.45403	2.50391	2.55379	1.44705e-7	7.16321e-8	1.19826e-5	6.27925e-6
chr12	112408487	112408556	7285466	0	-	0.550725	(0.526,0.57]	chr12	671904	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5:ENST00000551291.6:ENST00000553213.2:ENST00000549562.1:ENST00000548343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	17	2	1.98407	2.50338	3.02269	0.0117294	1.37862e-4	0.188071	0.00543389
chr14	55634591	55634658	7628442	0	+	0.447761	(0.424,0.459]	chr14	701934	2	CDS	CDS:UTR5:EXON_MRNA	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000554567.1:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	132	179	2	2.48689	2.502745	2.5186	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	30652781	30652842	8369858	0	+	0.770492	(0.629,1]	chr16	781336	2	CDS	CDS:EXON_MRNA	PRR14	ENSG00000156858.12	ENST00000563399.5:ENST00000568754.5:ENST00000569864.5:ENST00000564946.5:ENST00000565410.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	19	2	2.47168	2.5023150000000003	2.53295	0.00639682	0.00110765	0.114061	0.0305163
chr1	30966080	30966179	557891	0	-	0.545455	(0.526,0.57]	chr1	62055	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000498627.1:ENST00000471894.1:ENST00000490546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	43	2	2.15069	2.50115	2.85161	5.3055e-6	1.40217e-7	3.13833e-4	1.16606e-5
chr10	110601636	110601718	5975873	0	+	0.365854	(0.36,0.392]	chr10	537075	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000361804.5:ENST00000685743.1:ENST00000689321.1:ENST00000689986.1:ENST00000686057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	42	47	2	2.23322	2.501075	2.76893	5.82703e-7	6.29943e-10	4.25182e-5	7.63499e-8
chr10	6089099	6089166	5779776	0	+	0.80597	(0.629,1]	chr10	520886	2	UTR5	UTR5:EXON_MRNA	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5	protein_coding	protein_coding	protein_coding	protein_coding	8	28	2	2.0245	2.500235	2.97597	0.00301834	2.70404e-5	0.0692526	0.00133575
chr16	89285051	89285150	8622661	0	-	0.606061	(0.57,0.629]	chr16	813613	61	CDS	CDS:UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000562194.1:ENST00000642443.1:ENST00000645212.1:ENST00000646345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	22	2	2.31603	2.500035	2.68404	9.61681e-4	2.54929e-4	0.0272743	0.00915345
chr22	38294341	38294437	10035141	0	-	0.770833	(0.629,1]	chr22	1000249	1	CDS	CDS:UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000366216.6:ENST00000431632.5:ENST00000495232.5:ENST00000403904.5:ENST00000431611.5:ENST00000494610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	70	2	2.28477	2.498315	2.71186	2.82936e-8	2.43733e-8	2.67624e-6	2.3082e-6
chr9	128472912	128472977	5502343	0	+	0.507692	(0.49,0.526]	chr9	492418	1	CDS	CDS:UTR3:EXON_MRNA	ODF2	ENSG00000136811.17	ENST00000393533.6:ENST00000351030.8:ENST00000372814.7:ENST00000444119.7:ENST00000393527.8:ENST00000604420.5:ENST00000448249.8:ENST00000372807.10:ENST00000688016.1:ENST00000686232.1:ENST00000434106.7:ENST00000546203.5:ENST00000421776.6:ENST00000432065.6:ENST00000372791.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	22	2	2.45274	2.497925	2.54311	0.00102077	1.08652e-4	0.0276375	0.00442392
chr6	28284110	28284209	3750618	0	+	0.535354	(0.526,0.57]	chr6	340137	3	CDS	CDS:EXON_MRNA	PGBD1	ENSG00000137338.6	ENST00000259883.3:ENST00000682144.1	protein_coding	protein_coding	protein_coding	protein_coding	10	21	2	2.36841	2.49611	2.62381	0.00295916	5.79313e-5	0.0677262	0.002623
chr16	2760117	2760208	8304846	0	+	0.406593	(0.392,0.424]	chr16	773126	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000573498.5:ENST00000572278.1:ENST00000576076.1:ENST00000572952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	12	2	2.35343	2.495905	2.63838	0.00636373	0.00278175	0.114061	0.0657948
chr3	142734385	142734484	2035239	0	+	0.353535	(0.32,0.36]	chr3	203396	93	INTRON	INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10:ENST00000460401.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	20	2	2.29248	2.4950900000000003	2.6977	0.00294273	7.43963e-6	0.0674382	4.29339e-4
chr22	21488223	21488322	9993131	0	-	0.585859	(0.57,0.629]	chr22	995271	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	PI4KAP2	ENSG00000183506.17	ENST00000462560.6:ENST00000450651.5:ENST00000360806.9:ENST00000467443.5:ENST00000480319.5:ENST00000479693.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	9	22	2	2.45958	2.49477	2.52996	0.00105573	2.33722e-4	0.0283868	0.00846378
chr5	37690991	37691091	3154964	0	+	0.44	(0.424,0.459]	chr5	291430	26	INTRON	INTRON	WDR70	ENSG00000082068.9	ENST00000504564.1:ENST00000511906.5:ENST00000265107.9:ENST00000510699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	16	2	1.86286	2.49465	3.12644	0.00721518	2.23036e-4	0.127521	0.00816414
chr1	16206642	16206741	523017	0	-	0.656566	(0.629,1]	chr1	56637	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF19	ENSG00000142632.17	ENST00000270747.8:ENST00000478117.5:ENST00000471928.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	2.43738	2.4946450000000002	2.55191	0.004809	4.28276e-4	0.0964485	0.0141533
chr22	50576197	50576266	10066273	0	-	0.521739	(0.49,0.526]	chr22	1004373	1	CDS	CDS:EXON_MRNA	CPT1B	ENSG00000205560.13	ENST00000312108.12:ENST00000405237.7:ENST00000395650.6:ENST00000360719.6:ENST00000457250.5:ENST00000476790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	13	2	2.4732	2.493915	2.51463	0.0130492	0.00197937	0.198111	0.0505186
chrX	71134715	71134781	10155254	0	+	0.515152	(0.49,0.526]	chrX	1012160	1	CDS	CDS:UTR3:EXON_MRNA	MED12	ENSG00000184634.17	ENST00000692304.1:ENST00000690242.1:ENST00000687382.1:ENST00000374080.8:ENST00000333646.11:ENST00000688663.1:ENST00000690828.1:ENST00000374102.6:ENST00000693324.1:ENST00000686548.1:ENST00000690145.1:ENST00000691468.1:ENST00000689768.1:ENST00000691426.1:ENST00000691113.1:ENST00000693391.1:ENST00000688079.1:ENST00000690250.1:ENST00000692893.1:ENST00000687161.1:ENST00000686169.1:ENST00000691909.1:ENST00000692964.1:ENST00000688881.1:ENST00000688993.1:ENST00000685182.1:ENST00000687701.1:ENST00000685789.1:ENST00000688508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	13	2	2.4732	2.493915	2.51463	0.0130492	0.00197937	0.198111	0.0505186
chr14	69768062	69768137	7681521	0	+	0.32	[0,0.32]	chr14	706161	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557435.1:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1:ENST00000555412.1:ENST00000554021.1:ENST00000555349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	11	2	2.32511	2.493575	2.66204	0.00978561	0.00202535	0.160953	0.0511848
chr6	165931737	165931836	4270068	0	-	0.525253	(0.49,0.526]	chr6	386934	67	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	52	2	2.2455	2.493305	2.74111	3.50228e-7	1.1248e-8	2.66915e-5	1.13745e-6
chr15	28604782	28604882	7931754	0	+	0.3	[0,0.32]	chr15	732280	41	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000689985.1:ENST00000688694.1:ENST00000529537.2:ENST00000529624.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	23	24	2	2.34554	2.492075	2.63861	5.79445e-4	2.40088e-6	0.0183108	1.53938e-4
chr16	89883431	89883512	8483764	0	+	0.567901	(0.526,0.57]	chr16	793437	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1:ENST00000565404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	157	291	2	2.43443	2.489235	2.54404	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	5379370	5379470	8854162	0	-	0.44	(0.424,0.459]	chr17	846369	79	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573169.1:ENST00000576708.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	19	27	2	2.38277	2.48732	2.59187	5.20114e-5	2.4512e-5	0.002374	0.00121508
chr2	3575259	3575346	927244	0	+	0.62069	(0.57,0.629]	chr2	101861	1	UTR5	UTR5:EXON_MRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	27	2	2.04119	2.4861899999999997	2.93119	0.00318262	2.97203e-6	0.0699484	1.8616e-4
chr4	2963319	2963406	2822919	0	-	0.758621	(0.629,1]	chr4	267618	1	UTR5	UTR5:EXON_MRNA	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.31701	2.485895	2.65478	0.0035501	4.80586e-4	0.0776459	0.015761
chr1	150229071	150229154	761898	0	-	0.457831	(0.424,0.459]	chr1	82583	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5:ENST00000534220.1:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	67	91	2	2.38571	2.485835	2.58596	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	101672121	101672213	2376146	0	-	0.369565	(0.36,0.392]	chr3	228511	1	CDS	CDS:UTR5:EXON_MRNA	ZBTB11	ENSG00000066422.6	ENST00000312938.5:ENST00000689142.1:ENST00000690624.1:ENST00000688910.1:ENST00000690651.1:ENST00000461821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	18	2	2.20909	2.485505	2.76192	0.00394918	3.25073e-5	0.0816719	0.00156594
chr7	101833567	101833667	4493559	0	+	0.43	(0.424,0.459]	chr7	404874	142	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	25	2	1.68984	2.48527	3.2807	0.00581566	2.14921e-7	0.106906	1.7005e-5
chr1	90939251	90939349	685058	0	-	0.387755	(0.36,0.392]	chr1	74539	11	CDS	CDS:EXON_MRNA:INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	41	2	2.4619	2.4829499999999998	2.504	4.61556e-6	7.10661e-9	2.72616e-4	7.41274e-7
chr1	12387829	12387929	37503	0	+	0.37	(0.36,0.392]	chr1	4547	11	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	12	2	2.27415	2.481405	2.68866	0.00589412	0.00234853	0.109299	0.0566232
chr12	94333481	94333560	7237306	0	-	0.379747	(0.36,0.392]	chr12	667314	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000546587.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	52	57	2	2.39188	2.48088	2.56988	3.08969e-9	3.41449e-10	3.39674e-7	4.25871e-8
chr9	83625168	83625265	5410844	0	+	0.43299	(0.424,0.459]	chr9	483302	16	INTRON	INTRON	IDNK	ENSG00000148057.16	ENST00000533522.1:ENST00000454393.5:ENST00000376419.5:ENST00000530832.5:ENST00000405990.3:ENST00000376417.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	11	2	2.46913	2.47778	2.48643	0.0100222	0.00447569	0.164581	0.0903474
chr6	56611507	56611596	4091975	0	-	0.359551	(0.32,0.36]	chr6	372942	1	CDS	CDS:EXON_MRNA	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5	protein_coding	protein_coding	protein_coding	protein_coding	62	64	2	2.05286	2.4774599999999998	2.90206	2.8088e-7	1e-12	2.19678e-5	1.72912e-10
chr7	99560659	99560695	4488928	0	+	0.611111	(0.57,0.629]	chr7	403522	1	CDS	CDS:EXON_MRNA	ZNF655	ENSG00000197343.11	ENST00000320583.9:ENST00000626122.2:ENST00000467680.5:ENST00000357864.6:ENST00000489320.1:ENST00000452314.5:ENST00000416144.5:ENST00000454654.5:ENST00000412636.5:ENST00000252713.9:ENST00000449244.5:ENST00000423973.5:ENST00000493947.5:ENST00000425063.5:ENST00000493277.5:ENST00000422422.5:ENST00000488751.1:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000440391.5:ENST00000394163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	22	2	2.03456	2.4771349999999996	2.91971	0.00561954	3.23073e-5	0.105396	0.00155677
chrX	15822977	15823059	10087829	0	+	0.5	(0.49,0.526]	chrX	1006340	4	CDS	CDS:EXON_MRNA	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000307771.8:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	43	2	2.17757	2.47698	2.77639	9.24111e-5	2.89298e-9	0.00389025	3.18812e-7
chr11	62518038	62518137	6615177	0	-	0.525253	(0.49,0.526]	chr11	603481	13	CDS	CDS:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding	11	22	2	2.41554	2.476965	2.53839	8.2417e-4	1.41036e-4	0.023918	0.00565741
chr17	59213213	59213310	8754514	0	+	0.43299	(0.424,0.459]	chr17	833291	6	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SMG8	ENSG00000167447.13	ENST00000543872.6:ENST00000300917.10:ENST00000582469.1	protein_coding	protein_coding	protein_coding	protein_coding	11	17	2	2.2141	2.4756150000000003	2.73713	0.00829078	7.11745e-5	0.145308	0.00309409
chr3	23350773	23350873	1787245	0	+	0.48	(0.459,0.49]	chr3	183405	268	INTRON	INTRON	UBE2E2	ENSG00000182247.10	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	44	73	2	2.25179	2.474125	2.69646	1.31421e-8	1e-12	1.31782e-6	1.72912e-10
chrM	10957	11055	10480486	0	+	0.438776	(0.424,0.459]	chrM	1039008	2	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	24	34	2	2.30694	2.47377	2.6406	1.14298e-4	8.42442e-8	0.00467244	7.2795e-6
chr6	26158450	26158550	3748157	0	+	0.65	(0.629,1]	chr6	339578	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC5	ENSG00000158373.9	ENST00000377777.6:ENST00000289316.2	protein_coding	protein_coding	protein_coding	protein_coding	10	34	2	2.43738	2.4736700000000003	2.50996	4.28276e-4	1.59487e-5	0.0141533	8.2656e-4
chr4	89835546	89835567	2957939	0	-	0.428571	(0.424,0.459]	chr4	277940	1	CDS	CDS:EXON_MRNA	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1:ENST00000502987.5:ENST00000506691.1	protein_coding	protein_coding	protein_coding	protein_coding	26	36	2	2.33873	2.4706200000000003	2.60251	7.78962e-6	5.63606e-7	4.49375e-4	4.16055e-5
chrM	3401	3497	10480416	0	+	0.552083	(0.526,0.57]	chrM	1038988	2	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	33	59	2	1.91298	2.4705	3.02802	3.63499e-6	2.32686e-11	2.22545e-4	3.39652e-9
chr8	116769191	116769291	5072686	0	+	0.43	(0.424,0.459]	chr8	453942	20	INTRON	INTRON	UTP23	ENSG00000147679.12	ENST00000521703.5:ENST00000517814.1:ENST00000521071.1:ENST00000309822.7:ENST00000519443.1:ENST00000517820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	30	2	2.29682	2.4697449999999996	2.64267	1.83123e-4	8.56282e-7	0.00696867	6.13398e-5
chr1	156138683	156138781	308441	0	+	0.632653	(0.629,1]	chr1	34007	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	37	2	2.27986	2.46951	2.65916	1.6554e-4	1.1116e-5	0.00640635	6.18696e-4
chr10	133456554	133456654	6031008	0	+	0.65	(0.629,1]	chr10	541348	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCART1	ENSG00000214279.13	ENST00000482993.6:ENST00000463137.5:ENST00000640237.1:ENST00000488261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	21	2	2.22107	2.46809	2.71511	0.00203575	0.00195694	0.0513388	0.0481394
chr15	64300318	64300399	8213363	0	-	0.518519	(0.49,0.526]	chr15	761654	1	CDS	CDS:EXON_MRNA	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000635514.1:ENST00000635359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	45	2	2.20948	2.4676150000000003	2.72575	6.96903e-6	2.91498e-8	4.02222e-4	2.75399e-6
chrX	153932315	153932373	10462313	0	-	0.465517	(0.459,0.49]	chrX	1036986	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000393712.7:ENST00000370009.5:ENST00000466877.5:ENST00000484950.5:ENST00000460996.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7:ENST00000477882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	19	2	2.14714	2.46757	2.788	0.00156142	3.42937e-4	0.0393877	0.0119676
chr16	89884581	89884656	8483777	0	+	0.426667	(0.424,0.459]	chr16	793442	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1:ENST00000565404.1:ENST00000566751.5:ENST00000562256.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	214	284	2	2.44541	2.4671849999999997	2.48896	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	47240377	47240450	10123974	0	+	0.534247	(0.526,0.57]	chrX	1009499	2	CDS	CDS:UTR5:EXON_MRNA	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000377107.7:ENST00000469080.5:ENST00000377080.7:ENST00000377078.2:ENST00000489111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	52	96	2	2.42948	2.4668	2.50412	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	37326839	37326937	1828943	0	+	0.336735	(0.32,0.36]	chr3	185140	34	CDS	CDS:EXON_MRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	38	39	2	1.92493	2.465525	3.00612	9.9906e-5	2.61468e-10	0.00413227	3.32559e-8
chr9	105564689	105564788	5457713	0	+	0.454545	(0.424,0.459]	chr9	487520	52	INTRON	INTRON	FKTN	ENSG00000106692.15	ENST00000675443.1:ENST00000223528.6:ENST00000675695.1:ENST00000357998.10:ENST00000675668.1:ENST00000448551.6:ENST00000675736.1:ENST00000674563.1:ENST00000602661.6:ENST00000490134.1:ENST00000479846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	25	2	1.92617	2.463775	3.00138	0.00403396	3.70767e-7	0.0817225	2.81987e-5
chr2	187508742	187508841	1646077	0	-	0.393939	(0.392,0.424]	chr2	169064	46	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	12	2	2.36514	2.461435	2.55773	0.00522888	0.00357576	0.0992178	0.0781496
chr1	632230	632326	28	0	+	0.427083	(0.424,0.459]	chr1	3	13	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	9	13	2	2.09956	2.46098	2.8224	0.00668885	0.00212808	0.116828	0.0533203
chr6	143444886	143444969	4221077	0	-	0.385542	(0.36,0.392]	chr6	383792	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000367593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	18	2	2.18922	2.46021	2.7312	0.00764253	1.6959e-5	0.130982	8.71342e-4
chr17	36585839	36585902	8705319	0	+	0.412698	(0.392,0.424]	chr17	824838	1	CDS	CDS:EXON_MRNA	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000618837.4:ENST00000619573.1:ENST00000612563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	25	2	2.24671	2.4588900000000002	2.67107	3.68023e-4	6.5337e-6	0.0124577	3.80745e-4
chr12	20459803	20459903	6842962	0	+	0.36	(0.32,0.36]	chr12	625044	892	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	29	2	1.94936	2.458005	2.96665	0.00251098	6.89466e-9	0.0603141	7.17413e-7
chr19	49450781	49450848	9525157	0	-	0.58209	(0.57,0.629]	chr19	941080	1	CDS	CDS:EXON_MRNA	PIH1D1	ENSG00000104872.11	ENST00000262265.10:ENST00000596916.5:ENST00000596049.5:ENST00000601807.5:ENST00000601053.5:ENST00000595516.5:ENST00000599366.5:ENST00000597415.5:ENST00000593900.5:ENST00000595074.1:ENST00000599791.1:ENST00000601825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	41	2	2.16585	2.457935	2.75002	1.01235e-4	6.8822e-8	0.00418551	5.98222e-6
chr1	173943528	173943615	806940	0	-	0.609195	(0.57,0.629]	chr1	89898	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	22	52	2	2.14512	2.4578499999999996	2.77058	2.72103e-4	2.34371e-11	0.00962241	3.42498e-9
chr1	36178507	36178596	108518	0	+	0.696629	(0.629,1]	chr1	12418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000530975.4:ENST00000487131.3:ENST00000373148.5:ENST00000532131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	29	2	2.17063	2.457835	2.74504	0.00760441	5.51845e-6	0.130982	3.2607e-4
chr15	55360655	55360751	8177404	0	-	0.354167	(0.32,0.36]	chr15	758532	12	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCPG1	ENSG00000260916.8	ENST00000442196.8:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	55	2	2.18787	2.457065	2.72626	3.31267e-8	1.01188e-10	3.08176e-6	1.36357e-8
chr5	150361155	150361211	3356751	0	+	0.5	(0.49,0.526]	chr5	308533	1	CDS	CDS:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000646961.1:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000643812.1:ENST00000515516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	43	2	2.17356	2.45688	2.7402	1.34152e-6	1.28074e-6	9.12971e-5	8.72782e-5
chr2	24299908	24299995	1397450	0	-	0.413793	(0.392,0.424]	chr2	144947	1	CDS	CDS:EXON_MRNA	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5	protein_coding	protein_coding	protein_coding	protein_coding	44	51	2	2.24979	2.45606	2.66233	1.97882e-8	1.42715e-8	1.93721e-6	1.41866e-6
chr1	93510981	93511081	235991	0	+	0.48	(0.459,0.49]	chr1	23644	110	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	7	13	2	2.22001	2.454765	2.68952	0.0100465	0.00206127	0.170122	0.0505307
chr19	51694200	51694292	9379660	0	+	0.565217	(0.526,0.57]	chr19	914562	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPACA6	ENSG00000182310.15	ENST00000646845.1:ENST00000637797.2:ENST00000576093.5:ENST00000573266.5:ENST00000571328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	31	2	1.97502	2.453345	2.93167	0.00334021	6.34952e-8	0.0734189	5.52666e-6
chr6	4891898	4891991	3693298	0	+	0.451613	(0.424,0.459]	chr6	336543	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	16	2	2.28724	2.45273	2.61822	0.00227848	7.81679e-4	0.0555721	0.0230767
chr6	89664557	89664628	4128076	0	-	0.366197	(0.36,0.392]	chr6	376180	2	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	14	16	2	2.22427	2.45212	2.67997	0.00205969	4.59585e-4	0.0505307	0.0151123
chr11	61967564	61967634	6614329	0	-	0.628571	(0.57,0.629]	chr11	603467	3	UTR5	UTR5:EXON_MRNA	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	79	2	2.1384	2.45207	2.76574	4.73349e-10	2.60906e-10	5.83319e-8	3.30389e-8
chrM	4469	4563	10480425	0	+	0.489362	(0.459,0.49]	chrM	1038989	1	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	21	35	2	2.38844	2.4490800000000004	2.50972	1.06208e-5	3.74616e-6	5.73048e-4	2.28647e-4
chr18	2743260	2743360	9039355	0	+	0.36	(0.32,0.36]	chr18	874190	1	SS3_PROX	SS3_PROX:INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	9	2	2.24435	2.44908	2.65381	0.0121019	0.0110381	0.185048	0.179068
chr5	141319377	141319471	3624280	0	-	0.478723	(0.459,0.49]	chr5	329089	4	CDS	CDS:EXON_MRNA:INTRON	TAF7	ENSG00000178913.9	ENST00000686518.1:ENST00000624699.1:ENST00000313368.8:ENST00000624761.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	40	2	2.30024	2.446895	2.59355	2.09573e-5	7.89746e-8	0.00104722	6.83517e-6
chr18	245065	245160	9163083	0	-	0.305263	[0,0.32]	chr18	882972	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000579891.5:ENST00000577552.5:ENST00000582313.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	21	2	2.21844	2.4454200000000004	2.6724	9.19716e-4	1.93659e-5	0.0259473	9.81584e-4
chr15	63744123	63744223	8210770	0	-	0.52	(0.49,0.526]	chr15	761406	89	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	18	2	2.41554	2.44437	2.4732	0.00197937	8.2417e-4	0.0505186	0.023918
chr3	52686015	52686092	1883511	0	+	0.558442	(0.526,0.57]	chr3	191974	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GNL3	ENSG00000163938.17	ENST00000479230.5:ENST00000468146.5:ENST00000394799.6:ENST00000468885.1:ENST00000418458.6:ENST00000492349.5:ENST00000462550.5:ENST00000496254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	17	2	1.73096	2.4441300000000004	3.1573	0.00982663	4.45312e-4	0.16817	0.0146627
chr20	53027420	53027520	9673153	0	+	0.44	(0.424,0.459]	chr20	955958	537	INTRON	INTRON	TSHZ2	ENSG00000182463.16	ENST00000371497.10	protein_coding	protein_coding	protein_coding	protein_coding	14	17	2	1.76152	2.44398	3.12644	0.00635151	2.23036e-4	0.116758	0.00816414
chr19	15380297	15380374	9449403	0	-	0.792208	(0.629,1]	chr19	928464	2	CDS	CDS:UTR3:EXON_MRNA	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	18	2	2.25329	2.44395	2.63461	0.00559835	0.0028169	0.104204	0.0647686
chr7	5009960	5010060	4298218	0	+	0.42	(0.392,0.424]	chr7	389291	119	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000494947.5	lncRNA	lncRNA	lncRNA	lncRNA	15	19	2	2.2643	2.443365	2.62243	0.00205458	7.18427e-5	0.0504496	0.00311482
chr12	108792379	108792469	7274004	0	-	0.622222	(0.57,0.629]	chr12	670146	3	CDS	CDS:UTR3:EXON_MRNA	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000546433.5:ENST00000551165.5:ENST00000326470.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	15	2	2.39432	2.44285	2.49138	0.00573141	0.00295413	0.106459	0.0676474
chr12	9438093	9438176	7082762	0	-	0.53012	(0.526,0.57]	chr12	651381	2	EXON_PSEUDO	EXON_PSEUDO	DDX12P	ENSG00000214826.5	ENST00000432996.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	11	20	2	1.93418	2.4428	2.95142	0.00248547	2.97995e-4	0.0597943	0.0105806
chr17	4965331	4965431	8853264	0	-	0.46	(0.459,0.49]	chr17	846124	41	INTRON	INTRON	SPAG7	ENSG00000091640.8	ENST00000206020.8:ENST00000575142.5:ENST00000573366.5:ENST00000575784.2:ENST00000573805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	16	2	2.34837	2.44273	2.53709	0.00230142	0.00154068	0.0557533	0.0389999
chr11	94850013	94850113	6470286	0	+	0.44	(0.424,0.459]	chr11	584807	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	11	16	2	2.09956	2.442025	2.78449	0.00668885	2.25298e-4	0.116828	0.00827964
chr13	48427831	48427931	7376575	0	+	0.52	(0.49,0.526]	chr13	681714	460	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	11	21	2	2.33942	2.441265	2.54311	0.00102077	2.99217e-4	0.0276375	0.0106204
chr11	2972101	2972190	6538656	0	-	0.438202	(0.424,0.459]	chr11	593834	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	231	300	2	2.39596	2.440805	2.48565	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	130873037	130873137	5516663	0	+	0.67	(0.629,1]	chr9	495082	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	2.4293	2.4396050000000002	2.44991	0.00162748	1.42925e-4	0.0410091	0.00569484
chr1	155934373	155934413	779311	0	-	0.6	(0.57,0.629]	chr1	86133	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000482337.5:ENST00000466713.1:ENST00000491599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	30	2	2.098	2.4388699999999996	2.77974	0.00107583	3.15524e-6	0.0299939	1.97057e-4
chr3	160411924	160412004	2069128	0	+	0.35	(0.32,0.36]	chr3	205407	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMC4	ENSG00000113810.16	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000487747.5:ENST00000465563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	121	119	2	2.2536	2.43785	2.6221	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	107891094	107891193	4154529	0	-	0.434343	(0.424,0.459]	chr6	378295	76	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	45	60	2	2.21034	2.4377050000000002	2.66507	1.04482e-7	2.01387e-11	8.77452e-6	2.95774e-9
chr12	122483862	122483962	7308587	0	-	0.36	(0.32,0.36]	chr12	674893	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000544054.5:ENST00000536663.5:ENST00000540586.1	protein_coding	protein_coding	protein_coding	protein_coding	18	19	2	2.41216	2.437215	2.46227	0.00191116	5.77471e-5	0.048836	0.00262999
chr1	51785807	51785886	144842	0	+	0.392405	(0.392,0.424]	chr1	17738	1	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	13	2	1.90257	2.43696	2.97135	0.00989786	0.00130048	0.162781	0.0347373
chr22	17048724	17048823	9891006	0	+	0.525253	(0.49,0.526]	chr22	981653	9	INTRON	INTRON	CECR7	ENSG00000237438.7	ENST00000441006.5:ENST00000414401.5:ENST00000609932.5:ENST00000609596.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	29	53	2	2.15392	2.4364299999999997	2.71894	3.00435e-6	1.12373e-9	1.85275e-4	1.3178e-7
chr5	403063	403162	3108229	0	+	0.535354	(0.526,0.57]	chr5	287807	260	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	15	28	2	2.25373	2.43615	2.61857	2.07935e-4	3.94089e-5	0.00775513	0.00185603
chr5	150379228	150379318	3356952	0	+	0.611111	(0.57,0.629]	chr5	308600	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000515035.5:ENST00000674413.1:ENST00000514442.5:ENST00000506063.1:ENST00000506767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	23	2	2.04119	2.435035	2.82888	0.00318262	5.64728e-5	0.0699484	0.00257392
chr1	174437544	174437644	352819	0	+	0.45	(0.424,0.459]	chr1	38884	430	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	24	2	2.2554	2.434865	2.61433	0.00139817	5.97156e-6	0.0366234	3.49315e-4
chr3	48570133	48570178	2269686	0	-	0.733333	(0.629,1]	chr3	219638	1	CDS	CDS:EXON_MRNA	COL7A1	ENSG00000114270.18	ENST00000681320.1:ENST00000328333.12:ENST00000487017.5:ENST00000459756.5:ENST00000467985.1:ENST00000422991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	2.31701	2.4344599999999996	2.55191	0.004809	0.0035501	0.0964485	0.0776459
chr13	21178399	21178496	7331200	0	+	0.42268	(0.392,0.424]	chr13	677912	13	UTR3	UTR3:EXON_MRNA	MRPL57	ENSG00000173141.5	ENST00000309594.5	protein_coding	protein_coding	protein_coding	protein_coding	15	20	2	2.0571	2.4339750000000002	2.81085	0.0113347	3.24e-6	0.181692	1.99502e-4
chr1	222961526	222961626	438527	0	+	0.47	(0.459,0.49]	chr1	47285	178	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1:ENST00000360254.3:ENST00000284476.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	27	2	2.23014	2.4322049999999997	2.63427	4.11028e-4	1.01659e-5	0.0136895	5.53516e-4
chr3	141593828	141593928	2034284	0	+	0.34	(0.32,0.36]	chr3	203270	33	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9:ENST00000509118.5:ENST00000509032.5:ENST00000506365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	11	2	2.24435	2.43151	2.61867	0.0121019	0.00233389	0.185048	0.0565058
chr1	204434338	204434438	842486	0	-	0.55	(0.526,0.57]	chr1	93647	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIK3C2B	ENSG00000133056.14	ENST00000367187.7:ENST00000424712.6:ENST00000684373.1:ENST00000683234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	22	2	1.83984	2.431265	3.02269	0.00211888	1.37862e-4	0.0532704	0.00543389
chr1	9731205	9731297	513868	0	-	0.619565	(0.57,0.629]	chr1	55189	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	67	139	2	2.35509	2.4290450000000003	2.503	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	3979807	3979893	9411744	0	-	0.686047	(0.629,1]	chr19	920614	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	159	478	2	2.3552	2.427925	2.50065	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43273455	43273555	8938196	0	-	0.6	(0.57,0.629]	chr17	859071	433	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	7	17	2	2.30578	2.4278899999999997	2.55	0.0076713	6.95774e-4	0.130982	0.0211658
chr1	23319293	23319389	542969	0	-	0.40625	(0.392,0.424]	chr1	59968	2	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	11	14	2	2.35343	2.427825	2.50222	0.00278175	0.00201399	0.0657948	0.0494938
chr1	237603207	237603306	470210	0	+	0.565657	(0.526,0.57]	chr1	50403	7	INTRON	INTRON	RYR2	ENSG00000198626.18	ENST00000366574.7	protein_coding	protein_coding	protein_coding	protein_coding	27	50	2	2.30837	2.426915	2.54546	3.83866e-6	6.42872e-9	2.33671e-4	6.75822e-7
chr19	49108068	49108160	9373348	0	+	0.73913	(0.629,1]	chr19	912728	4	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	36	2	2.34367	2.426815	2.50996	2.45902e-4	1.59487e-5	0.0089494	8.2656e-4
chr3	123700777	123700853	2413023	0	-	0.644737	(0.629,1]	chr3	231400	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	MYLK	ENSG00000065534.20	ENST00000360304.8:ENST00000360772.7:ENST00000686039.1:ENST00000685021.1:ENST00000688223.1:ENST00000689868.1:ENST00000688024.1:ENST00000693689.1:ENST00000691933.1:ENST00000464489.5:ENST00000690167.1:ENST00000346322.10:ENST00000686761.1:ENST00000690457.1:ENST00000685907.1:ENST00000685259.1:ENST00000686245.1:ENST00000686406.1:ENST00000687848.1:ENST00000684879.1:ENST00000686822.1:ENST00000692352.1:ENST00000504946.6:ENST00000689227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	83	2	2.3154	2.4267250000000002	2.53805	7.92954e-9	9.7375e-10	8.21783e-7	1.15234e-7
chr3	121694039	121694139	2404727	0	-	0.45	(0.424,0.459]	chr3	230482	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695039.1:ENST00000695040.1:ENST00000695108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	97	125	2	2.30643	2.426615	2.5468	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	41482250	41482349	2611509	0	+	0.464646	(0.459,0.49]	chr4	250078	282	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512228.5:ENST00000514190.5:ENST00000512820.5:ENST00000511424.5:ENST00000446625.6:ENST00000515847.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	39	2	2.30543	2.4261999999999997	2.54697	4.11339e-6	1.29035e-6	2.47066e-4	8.79143e-5
chr7	74691041	74691111	4431107	0	+	0.328571	(0.32,0.36]	chr7	398243	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000432143.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	17	2	2.17429	2.4261150000000002	2.67794	0.00112	4.63564e-4	0.030846	0.0152502
chr10	77843619	77843706	6177083	0	-	0.482759	(0.459,0.49]	chr10	553229	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	59	2	2.41828	2.4232050000000003	2.42813	2.30508e-8	2.76579e-9	2.19131e-6	3.05527e-7
chr17	64506206	64506293	8985520	0	-	0.609195	(0.57,0.629]	chr17	866093	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	20	2	1.94956	2.42113	2.8927	0.00468059	2.63329e-4	0.0901733	0.00943086
chr11	68014308	68014405	6426669	0	+	0.56701	(0.526,0.57]	chr11	579625	36	INTRON	INTRON	ALDH3B1	ENSG00000006534.17	ENST00000614849.4:ENST00000615368.4:ENST00000342456.11:ENST00000619675.4:ENST00000617288.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	14	2	2.2577	2.41858	2.57946	0.0110174	0.00230987	0.179063	0.0562688
chr19	49108160	49108251	9373349	0	+	0.747253	(0.629,1]	chr19	912728	5	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	41	2	1.69966	2.418435	3.13721	0.00602121	1.55958e-8	0.111585	1.54362e-6
chr16	29973867	29973964	8367919	0	+	0.628866	(0.57,0.629]	chr16	780799	1	UTR5	UTR5:EXON_MRNA	TAOK2	ENSG00000149930.18	ENST00000308893.9	protein_coding	protein_coding	protein_coding	protein_coding	13	29	2	2.32093	2.4183250000000003	2.51572	1.28755e-4	7.94869e-5	0.00510531	0.00341268
chr1	244840735	244840833	910650	0	-	0.316327	[0,0.32]	chr1	100815	2	UTR3	UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	11	11	2	2.15694	2.4163300000000003	2.67572	0.00747007	0.00446905	0.129812	0.0902927
chr17	76688112	76688199	9017070	0	-	0.597701	(0.57,0.629]	chr17	870780	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MXRA7	ENSG00000182534.14	ENST00000355797.7:ENST00000449428.7:ENST00000375036.6:ENST00000592148.1:ENST00000585519.5:ENST00000588114.5:ENST00000589082.1	protein_coding	protein_coding	protein_coding	protein_coding	8	19	2	2.23754	2.4154999999999998	2.59346	0.00481149	4.05465e-4	0.0964485	0.0135178
chr19	54455966	54456059	9386731	0	+	0.677419	(0.629,1]	chr19	915831	1	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	1.78942	2.41249	3.03556	0.00616958	2.20964e-4	0.114097	0.00809923
chr17	82056906	82056974	8822216	0	+	0.632353	(0.629,1]	chr17	841589	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPS1	ENSG00000169727.13	ENST00000320548.8:ENST00000624957.3:ENST00000623691.3:ENST00000578552.6:ENST00000306823.10:ENST00000584460.5:ENST00000392358.6:ENST00000623761.3:ENST00000392357.1:ENST00000578279.1:ENST00000578168.1:ENST00000583486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	21	2	2.25329	2.412435	2.57158	0.00559835	7.34532e-4	0.104204	0.0220209
chr7	98927166	98927266	4485979	0	+	0.53	(0.526,0.57]	chr7	402876	1	CDS	CDS:EXON_MRNA	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	11	18	2	1.77803	2.41191	3.04579	0.00426618	0.00107756	0.0861781	0.0299955
chr16	30737942	30738042	8370495	0	+	0.6	(0.57,0.629]	chr16	781597	10	CDS	CDS:EXON_MRNA	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding	26	55	2	2.11523	2.4100799999999998	2.70493	3.17182e-6	4.34232e-9	1.95416e-4	4.67999e-7
chr3	121694139	121694238	2404728	0	-	0.373737	(0.36,0.392]	chr3	230482	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695039.1:ENST00000695040.1:ENST00000695108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	127	131	2	2.29977	2.409655	2.51954	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	4032125	4032191	8848788	0	-	0.424242	(0.392,0.424]	chr17	845304	1	CDS	CDS:UTR3:EXON_MRNA	ZZEF1	ENSG00000074755.15	ENST00000381638.7:ENST00000571436.5:ENST00000573183.1:ENST00000573606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	31	2	1.95177	2.40917	2.86657	2.62994e-4	2.87272e-7	0.00942832	2.23534e-5
chr1	27603727	27603795	552748	0	-	0.720588	(0.629,1]	chr1	61343	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHDC1	ENSG00000126705.15	ENST00000673934.1:ENST00000642416.1:ENST00000642245.1:ENST00000643308.1:ENST00000480033.3:ENST00000644119.1:ENST00000643219.1:ENST00000646921.1:ENST00000646642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	20	2	2.1836700000000002	2.40914	2.63461	0.00283208	0.0028169	0.0662445	0.0647686
chr12	68315026	68315106	7197567	0	-	0.5125	(0.49,0.526]	chr12	664365	2	CDS	CDS:UTR3:EXON_MRNA	MDM1	ENSG00000111554.15	ENST00000682720.1:ENST00000303145.11:ENST00000540418.5:ENST00000411698.6:ENST00000536313.2:ENST00000545964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	14	2	2.19165	2.4090800000000003	2.62651	0.00771297	0.00258005	0.130982	0.0617778
chrM	11842	11940	10480495	0	+	0.5	(0.49,0.526]	chrM	1039008	11	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	10	18	2	1.93369	2.408935	2.88418	0.00527196	4.05006e-4	0.0999505	0.0135138
chr1	245089629	245089729	487099	0	+	0.51	(0.49,0.526]	chr1	51401	19	INTRON	INTRON	EFCAB2	ENSG00000203666.13	ENST00000391837.7:ENST00000366522.6:ENST00000497591.5:ENST00000447569.6:ENST00000487845.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	27	2	2.08198	2.4089	2.73582	0.00209253	3.3768e-6	0.0527458	2.10586e-4
chr3	41199471	41199555	1845944	0	+	0.630952	(0.629,1]	chr3	186860	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	18	2	2.36786	2.4088849999999997	2.44991	0.011144	0.00162748	0.179068	0.0410091
chrX	77755188	77755288	10384847	0	-	0.36	(0.32,0.36]	chrX	1030575	376	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000624032.3:ENST00000623321.3:ENST00000624668.3:ENST00000622960.1:ENST00000624193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	20	2	2.34276	2.40881	2.47486	4.32638e-4	1.63908e-4	0.0142927	0.00634549
chr6	98921898	98921998	4136759	0	-	0.39	(0.36,0.392]	chr6	377045	38	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	14	16	2	2.27415	2.4072500000000003	2.54035	0.00589412	1.87242e-4	0.109299	0.00697985
chr8	127831469	127831569	5088313	0	+	0.46	(0.459,0.49]	chr8	455244	112	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	17	27	2	2.2103	2.406905	2.60351	9.72024e-5	8.06562e-5	0.0040238	0.00345827
chr12	49636715	49636782	6905500	0	+	0.492537	(0.49,0.526]	chr12	629427	1	CDS	CDS:EXON_MRNA	PRPF40B	ENSG00000110844.14	ENST00000548825.7:ENST00000261897.5:ENST00000380281.5	protein_coding	protein_coding	protein_coding	protein_coding	28	46	2	1.92063	2.405475	2.89032	6.05471e-6	1.44957e-7	3.50265e-4	1.20004e-5
chr10	15786360	15786460	6069227	0	-	0.5	(0.49,0.526]	chr10	544184	4	SS5_PROX	SS5_PROX:INTRON	MINDY3	ENSG00000148481.14	ENST00000477891.1:ENST00000378036.5:ENST00000277632.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	38	2	2.34503	2.405285	2.46554	1.42294e-5	1.82137e-6	7.59524e-4	1.19198e-4
chr11	32583797	32583887	6365038	0	+	0.7	(0.629,1]	chr11	570074	1	UTR5	UTR5:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	27	2	2.09939	2.40484	2.71029	0.00408309	5.06631e-5	0.0825355	0.0023197
chr1	20846010	20846109	534411	0	-	0.40404	(0.392,0.424]	chr1	58886	46	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000435383.2:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	22	2	2.10221	2.403735	2.70526	0.00193741	1.15475e-5	0.0476787	6.15512e-4
chr3	126802603	126802703	1980523	0	+	0.47	(0.459,0.49]	chr3	199291	218	INTRON	INTRON	CHCHD6	ENSG00000159685.11	ENST00000290913.8:ENST00000503119.5:ENST00000508789.5:ENST00000514908.5:ENST00000513253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	15	2	1.93103	2.403735	2.87644	0.0116056	6.44081e-4	0.18628	0.0194527
chr14	102702912	102703011	7760846	0	+	0.252525	[0,0.32]	chr14	712577	12	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	13	13	2	2.32511	2.39862	2.47213	0.00978561	7.51345e-4	0.160953	0.0225125
chr10	118342269	118342324	6270828	0	-	0.618182	(0.57,0.629]	chr10	560928	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000470476.5:ENST00000469758.5:ENST00000369172.8:ENST00000487269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	33	2	2.22331	2.39849	2.57367	3.11302e-4	3.63225e-6	0.0106769	2.2242e-4
chr17	31177843	31177942	8695360	0	+	0.393939	(0.392,0.424]	chr17	823287	75	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000487476.5:ENST00000691014.1:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000490416.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	15	2	2.36514	2.3979299999999997	2.43072	0.00522888	6.4526e-4	0.0992178	0.0194824
chr7	55155829	55155887	4391255	0	+	0.586207	(0.57,0.629]	chr7	395477	1	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6	protein_coding	protein_coding	protein_coding	protein_coding	44	90	2	2.05793	2.394815	2.7317	6.61041e-9	1e-12	6.94696e-7	1.73382e-10
chr5	139363784	139363884	3333677	0	+	0.4	(0.392,0.424]	chr5	306074	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000507415.1:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	19	2	1.87667	2.39457	2.91247	0.00624329	2.63771e-5	0.115322	0.00130428
chr22	37687909	37687962	9940550	0	+	0.584906	(0.57,0.629]	chr22	988248	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOL12	ENSG00000273899.5	ENST00000493862.5:ENST00000438329.5:ENST00000359114.9:ENST00000474032.1:ENST00000468597.5:ENST00000611699.1:ENST00000484650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	20	2	2.20594	2.39309	2.58024	0.00210589	8.50719e-4	0.0530328	0.0245129
chr1	114757928	114758027	733023	0	-	0.656566	(0.629,1]	chr1	78682	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CSDE1	ENSG00000009307.17	ENST00000339438.10:ENST00000610726.5:ENST00000692719.1:ENST00000358528.9:ENST00000688211.1:ENST00000438362.7:ENST00000689217.1:ENST00000689989.1:ENST00000686025.1:ENST00000686781.1:ENST00000686123.1:ENST00000684913.1:ENST00000686235.1:ENST00000693467.1:ENST00000689732.1:ENST00000693644.1:ENST00000687759.1:ENST00000692044.1:ENST00000689885.1:ENST00000691403.1:ENST00000692629.1:ENST00000690013.1:ENST00000690420.1:ENST00000692950.1:ENST00000686667.1:ENST00000691032.1:ENST00000685676.1:ENST00000529046.6:ENST00000692672.1:ENST00000691377.1:ENST00000688611.1:ENST00000690207.1:ENST00000693311.1:ENST00000689510.1:ENST00000686581.1:ENST00000689727.1:ENST00000690784.1:ENST00000483030.2:ENST00000687548.1:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000524652.2:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	26	2	2.25269	2.39282	2.53295	0.00110765	5.18397e-4	0.0305163	0.0166428
chrM	3497	3592	10480417	0	+	0.578947	(0.57,0.629]	chrM	1038988	3	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	18	39	2	2.23656	2.392365	2.54817	1.15101e-4	4.49152e-7	0.0046905	3.35575e-5
chr14	73099666	73099686	7696957	0	+	0.3	[0,0.32]	chr14	707089	1	CDS	CDS:UTR3:EXON_MRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5:ENST00000532192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	31	2	2.24308	2.391585	2.54009	8.57721e-6	6.24214e-6	4.81708e-4	3.64547e-4
chr3	121694837	121694937	2404735	0	-	0.34	(0.32,0.36]	chr3	230482	12	CDS	CDS:UTR3:EXON_MRNA:INTRON	GOLGB1	ENSG00000173230.17	ENST00000340645.10:ENST00000614479.5:ENST00000694973.1:ENST00000393667.8:ENST00000694957.1:ENST00000695006.1:ENST00000695014.1:ENST00000695015.1:ENST00000694979.1:ENST00000694974.1:ENST00000491690.2:ENST00000695107.1:ENST00000482512.6:ENST00000694977.1:ENST00000695036.1:ENST00000494517.6:ENST00000694982.1:ENST00000695016.1:ENST00000694958.1:ENST00000695018.1:ENST00000695017.1:ENST00000695008.1:ENST00000472475.2:ENST00000489400.2:ENST00000695037.1:ENST00000695119.1:ENST00000695120.1:ENST00000695106.1:ENST00000695040.1:ENST00000695108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	47	45	2	2.27241	2.386675	2.50094	1.09161e-7	7.8751e-8	9.15461e-6	6.81765e-6
chr5	389989	390089	3108098	0	+	0.54	(0.526,0.57]	chr5	287807	129	INTRON	INTRON	AHRR	ENSG00000063438.20	ENST00000684583.1:ENST00000514523.1:ENST00000510400.5:ENST00000316418.10	protein_coding	protein_coding	protein_coding	protein_coding	60	100	2	1.96221	2.384995	2.80778	3.51836e-10	1e-12	4.42081e-8	1.73382e-10
chr3	49121432	49121512	2274048	0	-	0.625	(0.57,0.629]	chr3	220886	1	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000467506.5:ENST00000484713.1:ENST00000498377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	22	2	2.08343	2.3837349999999997	2.68404	0.00202179	2.54929e-4	0.0496691	0.00915345
chr2	231455498	231455597	1722092	0	-	0.50505	(0.49,0.526]	chr2	176734	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	47	2	2.09886	2.383725	2.66859	5.45978e-5	1.97076e-9	0.00249992	2.21892e-7
chr12	123326151	123326242	7313290	0	-	0.395604	(0.392,0.424]	chr12	675593	1	CDS	CDS:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	14	17	2	2.35343	2.379875	2.40632	0.00278175	3.67029e-4	0.0657948	0.0124309
chr16	72105231	72105289	8430387	0	+	0.603448	(0.57,0.629]	chr16	790164	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000268482.8:ENST00000579387.5:ENST00000562774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	22	2	1.94956	2.378125	2.80669	0.00468059	9.15468e-5	0.0901733	0.00387303
chr5	143354119	143354219	3628860	0	-	0.39	(0.36,0.392]	chr5	329818	396	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	27	2	2.15857	2.377935	2.5973	1.31868e-4	8.57352e-6	0.00529825	4.81682e-4
chr11	20118552	20118651	6345456	0	+	0.424242	(0.392,0.424]	chr11	569092	4	UTR3	UTR3:EXON_MRNA	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5:ENST00000533746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	18	2	2.06515	2.3777600000000003	2.69037	0.00119722	5.7925e-4	0.0326347	0.0183593
chr15	34437479	34437561	8126443	0	-	0.878049	(0.629,1]	chr15	751847	2	UTR5	UTR5:EXON_MRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5	protein_coding	protein_coding	protein_coding	protein_coding	605	1745	2	2.36536	2.37688	2.3884	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43281954	43282054	8938281	0	-	0.61	(0.57,0.629]	chr17	859071	518	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	49	101	2	2.2384	2.376845	2.51529	3.32554e-10	1e-12	4.18016e-8	1.73382e-10
chr7	116744608	116744708	4521304	0	+	0.42	(0.392,0.424]	chr7	407121	32	INTRON	INTRON	MET	ENSG00000105976.16	ENST00000318493.11:ENST00000397752.8:ENST00000436117.2:ENST00000495962.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	25	2	2.06515	2.376575	2.688	0.00119722	3.44984e-6	0.0326347	2.12255e-4
chr10	87946823	87946922	5928138	0	+	0.484848	(0.459,0.49]	chr10	531348	9	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000688922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	23	2	2.14714	2.3762749999999997	2.60541	0.00156142	4.25044e-5	0.0393877	0.00199812
chr17	30835762	30835857	8692181	0	+	0.4	(0.392,0.424]	chr17	822951	18	CDS	CDS:EXON_MRNA	ATAD5	ENSG00000176208.9	ENST00000321990.5:ENST00000578295.5:ENST00000585133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	30	34	2	1.88951	2.3760399999999997	2.86257	2.52532e-4	4.89627e-8	0.00906248	4.38388e-6
chr1	171577433	171577501	341026	0	+	0.426471	(0.424,0.459]	chr1	38142	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	32	40	2	1.90215	2.376	2.84985	5.17178e-5	1.91609e-8	0.00236914	1.87752e-6
chr5	38602926	38603025	3445282	0	-	0.515152	(0.49,0.526]	chr5	317129	72	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000507786.1	protein_coding	processed_transcript	protein_coding	processed_transcript	32	54	2	2.07432	2.37576	2.6772	8.83726e-7	9.82958e-9	6.22261e-5	9.97396e-7
chr4	82359535	82359635	2932073	0	-	0.4	(0.392,0.424]	chr4	275754	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	40	2	1.96827	2.3744449999999997	2.78062	1.6531e-4	9.47928e-10	0.00630414	1.1198e-7
chr13	20836428	20836527	7460867	0	-	0.444444	(0.424,0.459]	chr13	687364	89	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11	protein_coding	protein_coding	protein_coding	protein_coding	19	25	2	2.19327	2.37193	2.55059	3.28502e-4	3.16276e-5	0.0112239	0.00152425
chr6	36540071	36540102	4049189	0	-	0.387097	(0.36,0.392]	chr6	369110	1	CDS	CDS:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	41	42	2	2.36069	2.370625	2.38056	3.8509e-7	2.70199e-7	2.92662e-5	2.09865e-5
chr17	30631754	30631840	8691234	0	+	0.488372	(0.459,0.49]	chr17	822858	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	LRRC37BP1	ENSG00000250462.8	ENST00000398851.7:ENST00000412831.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	31	47	2	2.10233	2.37052	2.63871	1.45238e-6	1.08036e-7	9.85271e-5	9.16311e-6
chr7	102567847	102567947	4793339	0	-	0.61	(0.57,0.629]	chr7	430377	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	27	2	1.94956	2.370275	2.79099	0.00468059	4.07983e-6	0.0901733	2.48496e-4
chr7	139405643	139405715	4568126	0	+	0.388889	(0.36,0.392]	chr7	410477	1	CDS	CDS:UTR3:EXON_MRNA	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	44	2	2.31071	2.3651999999999997	2.41969	8.541e-7	3.7009e-8	6.02719e-5	3.42436e-6
chr13	75800782	75800882	7397014	0	+	0.5	(0.49,0.526]	chr13	683267	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000533305.5:ENST00000377499.9:ENST00000377534.8:ENST00000534657.5:ENST00000321797.12:ENST00000465309.6:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	50	2	2.21471	2.36452	2.51433	1.19232e-6	6.1195e-8	8.2089e-5	5.46389e-6
chr2	240012091	240012189	1734377	0	-	0.571429	(0.57,0.629]	chr2	178126	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	26	2	1.88319	2.3643549999999998	2.84552	0.00386205	1.14882e-5	0.0816719	6.12557e-4
chr18	22997676	22997734	9078354	0	+	0.362069	(0.36,0.392]	chr18	877113	2	CDS	CDS:EXON_MRNA	RBBP8	ENSG00000101773.19	ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000360790.9:ENST00000583057.1	protein_coding	protein_coding	protein_coding	protein_coding	20	21	2	2.25396	2.36292	2.47188	3.03878e-4	2.17796e-4	0.0105767	0.00809383
chr12	6753073	6753141	7078268	0	-	0.75	(0.629,1]	chr12	650312	3	UTR5	UTR5:EXON_MRNA:INTRON	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000539187.5:ENST00000541346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	17	2	2.25329	2.362485	2.47168	0.00639682	0.00559835	0.114061	0.104204
chr15	71164861	71164953	8228768	0	-	0.413043	(0.392,0.424]	chr15	763591	2	EXON_PSEUDO	EXON_PSEUDO	HMGB1P6	ENSG00000259781.1	ENST00000569046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	40	45	2	2.1045	2.3620799999999997	2.61966	5.13559e-6	5.14794e-9	3.0717e-4	5.477e-7
chr10	32018562	32018662	6101594	0	-	0.24	[0,0.32]	chr10	546843	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5:ENST00000493889.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	96	84	2	2.27944	2.3611950000000004	2.44295	8.25762e-12	1e-12	1.27793e-9	1.72912e-10
chr11	533452	533532	6533095	0	-	0.65	(0.629,1]	chr11	592828	1	CDS	CDS:EXON_MRNA	HRAS	ENSG00000174775.18	ENST00000311189.8:ENST00000493230.5:ENST00000397596.6:ENST00000397594.6:ENST00000451590.5:ENST00000417302.6:ENST00000462734.2:ENST00000479482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	43	2	1.7807	2.360825	2.94095	2.14507e-4	3.40484e-6	0.00797476	2.10826e-4
chr1	631940	632037	25	0	+	0.43299	(0.424,0.459]	chr1	3	10	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	61	74	2	2.13816	2.360245	2.58233	3.7371e-10	2.28397e-11	4.6718e-8	3.33719e-9
chr6	43770408	43770507	3784596	0	+	0.444444	(0.424,0.459]	chr6	347116	3	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	34	2	1.79592	2.358375	2.92083	6.84186e-4	3.6459e-8	0.020833	3.37452e-6
chr14	103520121	103520215	7918008	0	-	0.585106	(0.57,0.629]	chr14	730129	1	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5:ENST00000555039.1:ENST00000555366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	30	2	1.5026	2.358175	3.21375	0.00566312	1.30488e-6	0.105396	8.88104e-5
chr20	58673630	58673711	9682570	0	+	0.395062	(0.392,0.424]	chr20	956432	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000476384.5:ENST00000483434.5:ENST00000490700.5:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	55	61	2	2.0705	2.3572699999999998	2.64404	1.45804e-7	1.22935e-11	1.2105e-5	1.88108e-9
chr6	18236525	18236600	4016284	0	-	0.36	(0.32,0.36]	chr6	363481	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11:ENST00000652576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	106	96	2	2.21174	2.356955	2.50217	1e-12	1e-12	1.73382e-10	1.72912e-10
chr12	22464513	22464613	7107564	0	-	0.4	(0.392,0.424]	chr12	653373	7	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000539615.1	protein_coding	protein_coding	protein_coding	protein_coding	11	13	2	2.07615	2.356395	2.63664	0.00623766	0.00277883	0.114061	0.0657788
chr6	158644708	158644743	4246600	0	-	0.714286	(0.629,1]	chr6	386179	1	UTR5	UTR5:EXON_MRNA	DYNLT1	ENSG00000146425.11	ENST00000367089.8:ENST00000367085.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	22	2	2.24105	2.3563650000000003	2.47168	0.00639682	6.77648e-4	0.114061	0.0206437
chr5	1584783	1584883	3414579	0	-	0.51	(0.49,0.526]	chr5	314298	4	SS5_PROX	SS5_PROX:INTRON	SDHAP3	ENSG00000185986.13	ENST00000652578.1:ENST00000684972.1:ENST00000690867.1:ENST00000689786.1:ENST00000515467.2:ENST00000693074.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	30	2	1.61683	2.355115	3.0934	0.00676515	1.43281e-7	0.1204	1.18998e-5
chr15	99641064	99641164	8098840	0	+	0.57	(0.526,0.57]	chr15	748818	75	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	18	2	2.1093	2.354435	2.59957	0.00283719	0.00135608	0.0662445	0.0357597
chr2	156326617	156326717	1582345	0	-	0.49	(0.459,0.49]	chr2	163937	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NR4A2	ENSG00000153234.15	ENST00000339562.9:ENST00000426264.5:ENST00000409572.5:ENST00000417972.5:ENST00000417764.5:ENST00000675870.1:ENST00000429376.5:ENST00000409108.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	27	2	2.31751	2.354195	2.39088	2.53997e-4	3.96965e-5	0.0091261	0.00186899
chr12	123512658	123512757	7314352	0	-	0.50505	(0.49,0.526]	chr12	675726	128	INTRON	INTRON	RILPL1	ENSG00000188026.13	ENST00000376874.9:ENST00000636882.1:ENST00000340724.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	13	2	2.1024	2.3540099999999997	2.60562	0.0102832	0.00578443	0.170122	0.106345
chr1	12258018	12258103	36139	0	+	0.458824	(0.424,0.459]	chr1	4251	2	CDS	CDS:EXON_MRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4	protein_coding	protein_coding	protein_coding	protein_coding	12	16	2	2.08935	2.3537850000000002	2.61822	0.00403318	7.81679e-4	0.0817225	0.0230767
chr17	64054344	64054439	8982271	0	-	0.589474	(0.57,0.629]	chr17	865679	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERN1	ENSG00000178607.17	ENST00000680433.1:ENST00000433197.4:ENST00000680625.1:ENST00000583077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	16	2	2.312	2.35316	2.39432	0.00573141	0.00268566	0.106459	0.063945
chr12	49390028	49390128	6903165	0	+	0.36	(0.32,0.36]	chr12	629135	25	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	18	2	2.05744	2.352715	2.64799	0.00170506	2.36957e-4	0.0443083	0.00865882
chr9	18712643	18712742	5355364	0	+	0.444444	(0.424,0.459]	chr9	477995	52	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1:ENST00000380548.9:ENST00000276935.6:ENST00000380559.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	28	2	1.68984	2.35212	3.0144	0.00581566	6.85912e-8	0.106906	5.96538e-6
chr1	153888512	153888611	769258	0	-	0.383838	(0.36,0.392]	chr1	84224	16	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	20	2	2.09655	2.3519550000000002	2.60736	0.00175355	6.18454e-5	0.0440333	0.00274461
chr5	34191011	34191111	3437387	0	-	0.63	(0.629,1]	chr5	316051	16	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	20	2	2.17063	2.3517900000000003	2.53295	0.00760441	0.00110765	0.130982	0.0305163
chr7	102666163	102666258	4793871	0	-	0.526316	(0.526,0.57]	chr7	430540	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POLR2J2	ENSG00000228049.7	ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding	9	17	2	2.2577	2.351785	2.44587	0.00230987	0.00220059	0.0562688	0.0550857
chr13	102863005	102863103	7442864	0	+	0.44898	(0.424,0.459]	chr13	685231	11	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ERCC5	ENSG00000134899.24	ENST00000651002.1:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1:ENST00000651387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	31	2	1.78602	2.3512	2.91638	0.0063212	5.58565e-9	0.114061	5.89505e-7
chr7	116699084	116699184	4520843	0	+	0.57	(0.526,0.57]	chr7	407091	1	CDS_START	CDS_START:CDS:EXON_MRNA	MET	ENSG00000105976.16	ENST00000318493.11:ENST00000397752.8:ENST00000456159.1:ENST00000436117.2	protein_coding	protein_coding	protein_coding	protein_coding	14	25	2	1.72322	2.35105	2.97888	0.00691218	4.42989e-6	0.12284	2.62117e-4
chr10	45750750	45750838	5843419	0	+	0.568182	(0.526,0.57]	chr10	525277	1	CDS	CDS:EXON_MRNA	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4:ENST00000420848.3	protein_coding	protein_coding	protein_coding	protein_coding	36	62	2	2.31457	2.350955	2.38734	1.71888e-8	1.22534e-8	1.68839e-6	1.2341e-6
chr1	67425152	67425223	646117	0	-	0.577465	(0.57,0.629]	chr1	71805	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	67	2	1.95019	2.3508	2.75141	3.25333e-6	1.6453e-11	2.00284e-4	2.48811e-9
chr15	89899597	89899697	8273172	0	-	0.55	(0.526,0.57]	chr15	768478	47	UTR3	UTR3:EXON_MRNA	ARPIN	ENSG00000242498.8	ENST00000357484.10	protein_coding	protein_coding	protein_coding	protein_coding	6	12	2	2.30916	2.3471599999999997	2.38516	0.0104445	0.00834853	0.170894	0.145988
chr1	630303	630398	12	0	+	0.505263	(0.49,0.526]	chr1	2	8	EXON_PSEUDO	EXON_PSEUDO	MTND2P28	ENSG00000225630.1	ENST00000457540.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	13	23	2	1.90716	2.346525	2.78589	0.00370444	3.63491e-5	0.077446	0.00171817
chr1	170532578	170532677	337822	0	+	0.545455	(0.526,0.57]	chr1	37686	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GORAB	ENSG00000120370.14	ENST00000685976.1:ENST00000686870.1:ENST00000685515.1:ENST00000688499.1:ENST00000688688.1:ENST00000687880.1:ENST00000692875.1:ENST00000367762.2:ENST00000686135.1:ENST00000692234.1:ENST00000691235.1:ENST00000690898.1:ENST00000689173.1:ENST00000498166.6:ENST00000367763.8:ENST00000687370.1:ENST00000693173.1:ENST00000690124.1:ENST00000691574.1:ENST00000693373.1:ENST00000692855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	15	2	2.09268	2.346125	2.59957	0.00599097	0.00283719	0.10983	0.0662445
chr12	38698802	38698901	7138941	0	-	0.292929	[0,0.32]	chr12	655645	46	INTRON	INTRON	CPNE8	ENSG00000139117.14	ENST00000331366.10:ENST00000538596.6:ENST00000360449.3	protein_coding	protein_coding	protein_coding	protein_coding	16	15	2	2.12876	2.3459700000000003	2.56318	0.00417366	6.07586e-4	0.084478	0.0189985
chr4	4423517	4423587	2823873	0	-	0.442857	(0.424,0.459]	chr4	267816	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503692.5:ENST00000515687.5:ENST00000503861.5:ENST00000502267.1:ENST00000510296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	19	2	2.1733	2.344975	2.51665	0.00118296	5.39835e-4	0.0314755	0.0171653
chr3	42637662	42637761	1849787	0	+	0.323232	(0.32,0.36]	chr3	187248	9	CDS	CDS:UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	33	2	1.83032	2.344785	2.85925	0.00164802	2.03858e-9	0.0415232	2.29287e-7
chr11	4138283	4138383	6306003	0	+	0.44	(0.424,0.459]	chr11	565570	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	23	2	2.283	2.343645	2.40429	4.65683e-4	1.08545e-4	0.0153131	0.00442392
chr10	32698776	32698876	5832157	0	+	0.44	(0.424,0.459]	chr10	524238	34	INTRON	INTRON	CCDC7	ENSG00000216937.14	ENST00000639629.2:ENST00000375025.10:ENST00000302316.12:ENST00000639290.1:ENST00000375028.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	16	2	1.90168	2.343085	2.78449	0.0110992	2.25298e-4	0.181121	0.00827964
chr1	6475983	6476036	504933	0	-	0.735849	(0.629,1]	chr1	54476	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PLEKHG5	ENSG00000171680.23	ENST00000377740.5:ENST00000673471.2:ENST00000400915.8:ENST00000377732.5:ENST00000675548.1:ENST00000377748.6:ENST00000377728.8:ENST00000340850.10:ENST00000377725.5:ENST00000400913.6:ENST00000674790.1:ENST00000535355.6:ENST00000489097.6:ENST00000675694.1:ENST00000675123.1:ENST00000537245.6:ENST00000675093.1:ENST00000676287.1:ENST00000675655.1:ENST00000676362.1:ENST00000674803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	26	2	2.17063	2.342785	2.51494	0.00760441	6.43738e-5	0.130982	0.0028427
chr14	103521721	103521817	7918032	0	-	0.822917	(0.629,1]	chr14	730144	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKB	ENSG00000166165.14	ENST00000689346.1:ENST00000348956.7:ENST00000553528.5:ENST00000553652.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1:ENST00000555659.5:ENST00000554705.5:ENST00000555770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	1.904	2.3425000000000002	2.781	0.0125401	0.00122107	0.199657	0.0323167
chr7	73005835	73005922	4729646	0	-	0.632184	(0.629,1]	chr7	424071	4	EXON_LNCRNA	EXON_LNCRNA	STAG3L3	ENSG00000174353.17	ENST00000428423.5:ENST00000448173.5:ENST00000423834.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	17	2	2.31701	2.342435	2.36786	0.011144	0.0035501	0.179068	0.0776459
chrX	54812156	54812251	10133677	0	+	0.421053	(0.392,0.424]	chrX	1010870	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1:ENST00000487482.5:ENST00000487463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	10	2	2.30301	2.3422799999999997	2.38155	0.0122095	0.00993679	0.186377	0.169739
chr17	78698267	78698323	9018262	0	-	0.5	(0.49,0.526]	chr17	871042	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	30	2	2.27792	2.34126	2.4046	2.22548e-4	1.77536e-5	0.00826086	9.10792e-4
chrX	119834781	119834877	10416364	0	-	0.5	(0.49,0.526]	chrX	1033317	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UPF3B	ENSG00000125351.13	ENST00000636792.1:ENST00000276201.7:ENST00000345865.6	protein_coding	protein_coding	protein_coding	protein_coding	11	20	2	2.0361	2.3411799999999996	2.64626	0.00431067	1.79577e-4	0.0868826	0.0069054
chr7	100884739	100884838	4492900	0	+	0.444444	(0.424,0.459]	chr7	404694	1	CDS	CDS:EXON_MRNA	SRRT	ENSG00000087087.20	ENST00000611405.5:ENST00000614484.4:ENST00000618262.4:ENST00000618411.4:ENST00000460194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	194	235	2	2.32017	2.33981	2.35945	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	111274730	111274790	7447919	0	+	0.333333	(0.32,0.36]	chr13	685784	1	CDS	CDS:UTR3:EXON_MRNA	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000483189.1:ENST00000478679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	14	2	2.19467	2.3379149999999997	2.48116	0.00665607	8.5541e-4	0.118959	0.0246281
chr10	97373045	97373122	6220929	0	-	0.61039	(0.57,0.629]	chr10	556487	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RRP12	ENSG00000052749.14	ENST00000536831.5:ENST00000370992.9:ENST00000479481.5:ENST00000414986.5:ENST00000315563.10:ENST00000490815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	27	2	1.87138	2.337385	2.80339	4.05948e-4	3.58944e-4	0.0135248	0.0124466
chr10	50343916	50344014	6129921	0	-	0.510204	(0.49,0.526]	chr10	549153	5	CDS	CDS:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	18	2	2.0361	2.337295	2.63849	0.00431067	6.72549e-4	0.0868826	0.020502
chr14	55636348	55636448	7628460	0	+	0.32	[0,0.32]	chr14	701939	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000554567.1:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	32	2	2.31064	2.333195	2.35575	1.2224e-5	3.98838e-6	6.59327e-4	2.43025e-4
chr2	27369875	27369913	1407500	0	-	0.710526	(0.629,1]	chr2	146203	1	CDS	CDS:UTR3:EXON_MRNA	EIF2B4	ENSG00000115211.17	ENST00000347454.9:ENST00000405940.6:ENST00000445933.6:ENST00000493344.6:ENST00000451130.6:ENST00000475582.5:ENST00000418146.1:ENST00000462749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	36	2	2.14838	2.3316600000000003	2.51494	1.62507e-4	6.43738e-5	0.0062004	0.0028427
chr7	111235804	111235904	4816060	0	-	0.35	(0.32,0.36]	chr7	431926	2719	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	12	2	2.27213	2.33164	2.39115	0.005931	0.00408911	0.108771	0.0828036
chr17	18537998	18538097	8890020	0	-	0.323232	(0.32,0.36]	chr17	851105	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM106A:CCDC144B	ENSG00000273018.7:ENSG00000154874.16	ENST00000425211.5:ENST00000608216.5:ENST00000608141.5:ENST00000609193.5:ENST00000609832.5:ENST00000446853.1:ENST00000618081.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	21	20	2	2.05744	2.33137	2.6053	0.00170506	6.25679e-5	0.0443083	0.00277665
chr1	1479308	1479408	2365	0	+	0.63	(0.629,1]	chr1	629	2	SS5_PROX	SS5_PROX:INTRON	ATAD3B	ENSG00000160072.20	ENST00000673477.1:ENST00000308647.8:ENST00000472194.6:ENST00000378736.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	20	2	2.09009	2.330835	2.57158	0.0122043	7.34532e-4	0.194706	0.0220209
chr16	18350587	18350679	8522684	0	-	0.728261	(0.629,1]	chr16	800053	1	EXON_PSEUDO	EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	6	20	2	2.09009	2.330835	2.57158	0.0122043	7.34532e-4	0.194706	0.0220209
chr9	128262633	128262704	5744999	0	-	0.464789	(0.459,0.49]	chr9	515189	2	CDS	CDS:UTR3:EXON_MRNA	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000685377.1:ENST00000692923.1:ENST00000610329.5:ENST00000687179.1:ENST00000639983.2:ENST00000693736.1:ENST00000450617.7:ENST00000685900.1:ENST00000691841.1:ENST00000490257.6:ENST00000468488.2:ENST00000685382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	19	2	1.99872	2.3306649999999998	2.66261	0.00407279	2.50961e-4	0.0824335	0.00902798
chr11	83165970	83166063	6457793	0	+	0.311828	[0,0.32]	chr11	583618	5	CDS	CDS:EXON_MRNA	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5	protein_coding	protein_coding	protein_coding	protein_coding	29	26	2	2.12028	2.330185	2.54009	2.33371e-4	8.57721e-6	0.00845201	4.81708e-4
chr1	45608244	45608337	136826	0	+	0.430108	(0.424,0.459]	chr1	16788	11	CDS	CDS:UTR3:EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	78	95	2	2.25505	2.3295450000000004	2.40404	2.57014e-11	1e-12	3.74248e-9	1.72912e-10
chr7	141743901	141743989	4572694	0	+	0.454545	(0.424,0.459]	chr7	410949	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	26	2	1.79592	2.32823	2.86054	6.84186e-4	2.11035e-5	0.020833	0.00105418
chr1	54406090	54406172	627697	0	-	0.804878	(0.629,1]	chr1	69894	2	UTR5	UTR5:EXON_MRNA:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	2.30549	2.328185	2.35088	0.00130525	6.67562e-5	0.0348502	0.00291647
chrM	12906	13001	10480504	0	+	0.526316	(0.526,0.57]	chrM	1039009	7	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	13	23	2	2.24984	2.3278049999999997	2.40577	8.62466e-4	2.62151e-4	0.0248025	0.00940753
chr10	24585906	24586006	6082418	0	-	0.37	(0.36,0.392]	chr10	545194	15	CDS	CDS:UTR3:EXON_MRNA	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000477190.1:ENST00000636789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	27	2	1.95623	2.325975	2.69572	5.89122e-4	2.46081e-6	0.018613	1.55994e-4
chr14	100239440	100239537	7751277	0	+	0.701031	(0.629,1]	chr14	711631	2	CDS	CDS:EXON_MRNA	YY1	ENSG00000100811.14	ENST00000262238.10	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	2.09939	2.32565	2.55191	0.004809	0.00408309	0.0964485	0.0825355
chr12	14801383	14801428	7091971	0	-	0.244444	[0,0.32]	chr12	652284	1	UTR5	UTR5:EXON_MRNA	WBP11	ENSG00000084463.8	ENST00000261167.7:ENST00000535638.5:ENST00000544764.5:ENST00000535328.1:ENST00000543316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	36	2	2.21151	2.32551	2.43951	1.47535e-5	4.15481e-7	7.86373e-4	3.1145e-5
chr4	48522968	48523036	2893486	0	-	0.588235	(0.57,0.629]	chr4	272360	2	CDS	CDS:UTR3:EXON_MRNA	FRYL	ENSG00000075539.15	ENST00000358350.9:ENST00000507873.7:ENST00000503238.6:ENST00000641795.1:ENST00000514617.5:ENST00000513401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	39	2	2.11798	2.3252	2.53242	1.04867e-4	1.19633e-6	0.0043441	8.18644e-5
chr1	180012001	180012075	366914	0	+	0.445946	(0.424,0.459]	chr1	39690	2	CDS	CDS:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	73	89	2	2.19936	2.321715	2.44407	6.90592e-10	1e-12	8.33453e-8	1.72912e-10
chr6	31740038	31740129	3755202	0	+	0.593407	(0.57,0.629]	chr6	341624	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH5	ENSG00000204410.16	ENST00000652715.1:ENST00000375755.8:ENST00000425703.5:ENST00000375750.9:ENST00000482280.1:ENST00000463094.5:ENST00000650702.1:ENST00000375703.7:ENST00000375740.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	20	2	1.74931	2.321005	2.8927	0.00847886	2.63329e-4	0.140721	0.00943086
chr6	130870032	130870126	4197137	0	-	0.425532	(0.424,0.459]	chr6	381692	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6:ENST00000527423.5:ENST00000456097.6:ENST00000525198.1:ENST00000533912.1:ENST00000534166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	23	2	2.23031	2.320455	2.4106	8.60464e-4	6.0148e-5	0.024764	0.00268144
chr13	106567919	106567991	7563202	0	-	0.722222	(0.629,1]	chr13	695643	1	UTR5	UTR5:EXON_MRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	25	2	2.22107	2.319445	2.41782	0.00195694	5.91461e-4	0.0481394	0.0186777
chr7	87163434	87163525	4452325	0	+	0.373626	(0.36,0.392]	chr7	400127	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DMTF1	ENSG00000135164.19	ENST00000413276.6:ENST00000447863.5:ENST00000579677.5:ENST00000425406.5:ENST00000446796.6:ENST00000420131.5:ENST00000414630.6:ENST00000547146.6:ENST00000579850.5:ENST00000453049.5:ENST00000331242.12:ENST00000430405.7:ENST00000449088.7:ENST00000448598.5:ENST00000428819.5:ENST00000432937.6:ENST00000584619.5:ENST00000432366.6:ENST00000423590.6:ENST00000394703.9:ENST00000584457.5:ENST00000580710.5:ENST00000579592.5:ENST00000434534.5:ENST00000582925.5:ENST00000412139.6:ENST00000425705.2:ENST00000583833.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	43	43	2	2.09537	2.3190850000000003	2.5428	1.23179e-5	6.49734e-9	6.50544e-4	6.78438e-7
chr15	42208080	42208153	8140971	0	-	0.575342	(0.57,0.629]	chr15	753750	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	VPS39	ENSG00000166887.16	ENST00000318006.10:ENST00000348544.4:ENST00000568357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	24	2	1.82988	2.318285	2.80669	0.00316694	9.15468e-5	0.0718148	0.00387303
chr6	43014448	43014548	3780515	0	+	0.61	(0.57,0.629]	chr6	346258	1	SS5_PROX	SS5_PROX:INTRON	KLHDC3	ENSG00000124702.19	ENST00000244670.12:ENST00000326974.9	protein_coding	protein_coding	protein_coding	protein_coding	12	25	2	2.31584	2.315935	2.31603	9.61681e-4	1.78446e-4	0.0272743	0.00689669
chr19	49858056	49858114	9377283	0	+	0.62069	(0.57,0.629]	chr19	913966	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000600603.5:ENST00000601638.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5:ENST00000600105.5:ENST00000597793.5:ENST00000595934.1:ENST00000596424.1:ENST00000601093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	20	2	1.97536	2.31558	2.6558	0.00254623	0.0011074	0.0610316	0.0296131
chr17	64501818	64501911	8985460	0	-	0.494624	(0.49,0.526]	chr17	866055	7	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	44	2	2.16588	2.3120849999999997	2.45829	1.88266e-5	1.61886e-7	9.64067e-4	1.33658e-5
chr3	174455316	174455415	2090850	0	+	0.424242	(0.392,0.424]	chr3	206467	139	INTRON	INTRON	NAALADL2	ENSG00000177694.16	ENST00000491329.5:ENST00000482228.5:ENST00000481679.5:ENST00000478624.1:ENST00000495900.5:ENST00000434257.1:ENST00000489729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	19	2	2.19257	2.311645	2.43072	7.40881e-4	6.4526e-4	0.0224849	0.0194824
chr1	228396554	228396647	878094	0	-	0.580645	(0.57,0.629]	chr1	97722	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000475775.1:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	29	2	2.29787	2.310205	2.32254	5.26944e-4	4.78311e-5	0.0168102	0.00219447
chr8	130097330	130097430	5274551	0	-	0.56	(0.526,0.57]	chr8	471337	48	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000524124.5:ENST00000357668.2:ENST00000521075.5:ENST00000519483.5:ENST00000520189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	23	2	2.23214	2.3098549999999998	2.38757	5.34706e-4	4.59465e-4	0.0169835	0.0151123
chr1	26731241	26731332	83794	0	+	0.615385	(0.57,0.629]	chr1	8867	2	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	15	28	2	1.4963	2.30947	3.12264	0.00932792	2.62875e-6	0.161654	1.66335e-4
chr6	165804301	165804400	4268787	0	-	0.373737	(0.36,0.392]	chr6	386899	116	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	26	2	2.13859	2.309435	2.48028	2.55156e-4	1.5705e-5	0.00915854	8.20905e-4
chr22	38681978	38682078	9943175	0	+	0.69	(0.629,1]	chr22	988834	1	CDS_START	CDS_START:CDS:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.904	2.3075099999999997	2.71102	0.0125401	3.98595e-5	0.199657	0.00187459
chr1	112698478	112698556	261326	0	+	0.576923	(0.57,0.629]	chr1	27032	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOV10	ENSG00000155363.19	ENST00000413052.6:ENST00000369645.6:ENST00000686097.1:ENST00000690243.1:ENST00000686428.1:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2:ENST00000687509.1:ENST00000689955.1:ENST00000685268.1:ENST00000687333.1:ENST00000688698.1:ENST00000488160.5:ENST00000482545.5:ENST00000471160.5:ENST00000490413.1:ENST00000481711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	21	2	2.20594	2.304075	2.40221	0.00185505	8.50719e-4	0.0474587	0.0245129
chr6	165772627	165772727	4268466	0	-	0.31	[0,0.32]	chr6	386882	611	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	19	2	2.20134	2.3021700000000003	2.403	0.0035806	6.07786e-5	0.0782109	0.00269838
chr11	90209756	90209849	6707829	0	-	0.462366	(0.459,0.49]	chr11	612748	4	INTRON	INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000529987.5:ENST00000457199.6:ENST00000533724.5:ENST00000525317.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	22	2	1.99872	2.302065	2.60541	0.00407279	4.25044e-5	0.0824335	0.00199812
chr17	29092342	29092399	8901456	0	-	0.54386	(0.526,0.57]	chr17	853004	1	CDS	CDS:UTR3:EXON_MRNA	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	25	2	1.97502	2.30135	2.62768	0.00334021	1.63448e-5	0.0734189	8.46135e-4
chr11	8685415	8685438	6312482	0	+	0.521739	(0.49,0.526]	chr11	566450	1	SS3_PROX	SS3_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	19	2	1.78795	2.3005899999999997	2.81323	0.00408049	8.35112e-4	0.0825355	0.0240064
chr5	21470509	21470585	3134209	0	+	0.552632	(0.526,0.57]	chr5	289694	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000685140.1:ENST00000449061.3:ENST00000685932.1:ENST00000692990.1:ENST00000690861.1:ENST00000508973.6:ENST00000685731.1:ENST00000688956.1:ENST00000688960.1:ENST00000687425.1:ENST00000691878.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	23	2	1.97502	2.299415	2.62381	0.00334021	5.79313e-5	0.0734189	0.002623
chr4	42043619	42043718	2614548	0	+	0.40404	(0.392,0.424]	chr4	250398	42	INTRON	INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	14	2	2.13674	2.2992	2.46166	0.0089511	0.00113806	0.155806	0.030384
chr12	57208710	57208763	6923950	0	+	0.584906	(0.57,0.629]	chr12	633131	1	CDS	CDS:EXON_MRNA	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000556356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	13	2	2.0516200000000002	2.2983000000000002	2.54498	0.0120761	0.00846131	0.193138	0.140721
chrM	13192	13287	10480507	0	+	0.410526	(0.392,0.424]	chrM	1039009	10	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	69	71	2	1.92401	2.297465	2.67092	3.59381e-8	1.02029e-12	3.30508e-6	1.75878e-10
chr11	108312410	108312498	6486971	0	+	0.340909	(0.32,0.36]	chr11	586492	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000683524.1:ENST00000684152.1:ENST00000533690.5:ENST00000529588.5:ENST00000682286.1:ENST00000525056.2:ENST00000682302.1:ENST00000532765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	16	2	2.29248	2.2969549999999996	2.30143	0.00294273	7.08338e-4	0.0674382	0.0215338
chr1	117368417	117368485	271325	0	+	0.529412	(0.526,0.57]	chr1	28070	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000482811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	25	2	1.9101	2.2958	2.6815	4.64892e-4	3.72283e-4	0.0152806	0.0125803
chr10	74456168	74456268	5897773	0	+	0.45	(0.424,0.459]	chr10	529777	572	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	19	2	2.18418	2.294235	2.40429	0.00158197	4.65683e-4	0.041196	0.0153131
chr11	134210353	134210445	6783300	0	-	0.423913	(0.392,0.424]	chr11	619499	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1:ENST00000687965.1:ENST00000693663.1:ENST00000533155.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	25	2	1.87305	2.2940750000000003	2.7151	3.93634e-4	5.67044e-5	0.0135724	0.00258408
chr1	19126585	19126655	528123	0	-	0.585714	(0.57,0.629]	chr1	57737	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000475973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	16	2	2.04119	2.2930849999999996	2.54498	0.00846131	0.00318262	0.140721	0.0699484
chr19	10177291	10177367	9432905	0	-	0.486842	(0.459,0.49]	chr19	924832	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586988.5:ENST00000588952.5:ENST00000588118.5:ENST00000592342.5:ENST00000592054.5:ENST00000590619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	98	140	2	2.14886	2.29291	2.43696	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	72935370	72935470	1920305	0	+	0.4	(0.392,0.424]	chr3	194370	59	INTRON	INTRON	GXYLT2	ENSG00000172986.13	ENST00000389617.9:ENST00000498315.1	protein_coding	protein_coding	protein_coding	protein_coding	17	18	2	2.08337	2.292795	2.50222	0.00201399	6.53496e-4	0.0494938	0.0199608
chr12	122328343	122328426	7307486	0	-	0.325301	(0.32,0.36]	chr12	674756	2	CDS	CDS:EXON_MRNA	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000648993.1	protein_coding	protein_coding	protein_coding	protein_coding	66	60	2	1.98137	2.2911650000000003	2.60096	1.44957e-6	1.1724e-12	9.84034e-5	2.00886e-10
chr7	65755525	65755592	4397239	0	+	0.492537	(0.49,0.526]	chr7	396279	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	CCT6P1:SNORA22	ENSG00000228409.7:ENSG00000206634.1	ENST00000686363.1:ENST00000688735.1:ENST00000689814.1:ENST00000690196.1:ENST00000690636.1:ENST00000687809.1:ENST00000688944.1:ENST00000691983.1:ENST00000688184.1:ENST00000688478.1:ENST00000443108.7:ENST00000686689.1:ENST00000689785.1:ENST00000685316.1:ENST00000442266.3:ENST00000685398.1:ENST00000434500.6:ENST00000383907.1	snoRNA	snoRNA	snoRNA:transcribed_unprocessed_pseudogene	snoRNA:processed_transcript:transcribed_unprocessed_pseudogene	16	27	2	2.024	2.290905	2.55781	7.35721e-4	3.85623e-5	0.0220209	0.00183945
chr2	3547992	3548055	1373328	0	-	0.444444	(0.424,0.459]	chr2	142053	2	CDS	CDS:UTR3:EXON_MRNA	RNASEH1	ENSG00000171865.10	ENST00000315212.4:ENST00000436842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	17	2	2.2141	2.28968	2.36526	0.00829078	2.91554e-4	0.145308	0.0102737
chr12	119782517	119782577	7297458	0	-	0.5	(0.49,0.526]	chr12	673170	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1:ENST00000488203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	30	2	1.82246	2.289615	2.75677	5.29964e-4	1.65155e-5	0.0168365	8.50185e-4
chr6	165965510	165965610	4270409	0	-	0.42	(0.392,0.424]	chr6	386948	152	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	21	2	2.19257	2.2895849999999998	2.3866	7.40881e-4	2.09395e-4	0.0224849	0.00773314
chr1	156726997	156727089	782243	0	-	0.478261	(0.459,0.49]	chr1	86889	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ISG20L2	ENSG00000143319.17	ENST00000313146.10:ENST00000368219.2:ENST00000496538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	19	2	1.9513	2.286815	2.62233	0.00191547	0.0010962	0.0472985	0.030375
chr6	32975461	32975521	3757898	0	+	0.35	(0.32,0.36]	chr6	342712	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	15	2	2.27213	2.2867800000000003	2.30143	0.005931	7.08338e-4	0.108771	0.0215338
chr19	49086514	49086561	9373117	0	+	0.446809	(0.424,0.459]	chr19	912679	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	29	2	2.04569	2.28551	2.52533	8.96546e-4	1.73697e-6	0.0253113	1.15366e-4
chr11	122300036	122300134	6765227	0	-	0.428571	(0.424,0.459]	chr11	617621	47	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5:ENST00000648082.1:ENST00000670843.1:ENST00000658452.1:ENST00000529804.6:ENST00000659378.1:ENST00000670520.1:ENST00000655288.1:ENST00000665051.1:ENST00000663802.1:ENST00000666347.1:ENST00000648084.1:ENST00000528381.1:ENST00000656868.1:ENST00000526674.1	lncRNA	lncRNA	lncRNA	lncRNA	14	18	2	2.20128	2.28327	2.36526	0.00473715	2.91554e-4	0.0954457	0.0102737
chr22	24375015	24375115	9908935	0	+	0.27	[0,0.32]	chr22	984316	53	INTRON	INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1	protein_coding	protein_coding	protein_coding	protein_coding	41	36	2	1.96553	2.281	2.59647	1.75478e-4	1.98461e-8	0.00678525	1.90918e-6
chr10	133423495	133423581	6291530	0	-	0.837209	(0.629,1]	chr10	563197	3	CDS	CDS:EXON_MRNA	SPRN	ENSG00000203772.8	ENST00000685335.1:ENST00000414069.2	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.09009	2.280885	2.47168	0.0122043	0.00639682	0.194706	0.114061
chr8	143837406	143837457	5306834	0	-	0.803922	(0.629,1]	chr8	474244	1	CDS	CDS:EXON_MRNA	NRBP2	ENSG00000185189.18	ENST00000442628.7:ENST00000533093.5:ENST00000529747.5:ENST00000423469.6:ENST00000532940.5:ENST00000533846.5:ENST00000531729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	16	2	2.09009	2.280885	2.47168	0.0122043	0.00639682	0.194706	0.114061
chr15	50357043	50357143	7975083	0	+	0.41	(0.392,0.424]	chr15	737694	22	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GABPB1-AS1	ENSG00000244879.9	ENST00000659570.2:ENST00000670332.1:ENST00000667317.2:ENST00000668321.1:ENST00000499624.3:ENST00000648591.1:ENST00000558593.1	lncRNA	lncRNA	lncRNA	lncRNA	24	26	2	2.23949	2.28024	2.32099	1.19432e-4	7.19713e-5	0.00486367	0.00311955
chr12	42446618	42446718	6882185	0	+	0.44	(0.424,0.459]	chr12	628001	1	UTR3	UTR3:EXON_MRNA:INTRON	PPHLN1	ENSG00000134283.18	ENST00000395568.6:ENST00000256678.12:ENST00000317560.13:ENST00000432191.6:ENST00000624028.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	20	23	2	1.95652	2.27935	2.60218	4.94558e-4	2.33619e-4	0.0160179	0.00853998
chr19	49107885	49107977	9373346	0	+	0.73913	(0.629,1]	chr19	912728	2	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	66	2	1.93873	2.27928	2.61983	1.19578e-6	1.15962e-7	8.2089e-5	9.70039e-6
chr1	43166825	43166919	589395	0	-	0.531915	(0.526,0.57]	chr1	66257	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBNA1BP2	ENSG00000117395.13	ENST00000431635.6:ENST00000236051.3:ENST00000463906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	27	2	1.71689	2.277995	2.8391	0.0048809	4.09991e-6	0.0964485	2.46356e-4
chr12	20431516	20431616	6842679	0	+	0.4	(0.392,0.424]	chr12	625044	609	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	29	2	1.82579	2.27768	2.72957	3.24422e-4	5.78466e-6	0.0113387	3.38916e-4
chr1	45613071	45613168	136876	0	+	0.340206	(0.32,0.36]	chr1	16793	27	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	59	52	2	2.21897	2.276685	2.3344	4.26648e-8	1.87553e-8	3.85323e-6	1.81891e-6
chr17	5361207	5361300	8637388	0	+	0.483871	(0.459,0.49]	chr17	815936	1	CDS	CDS:EXON_MRNA	RABEP1	ENSG00000029725.17	ENST00000537505.6:ENST00000575475.2:ENST00000341923.10:ENST00000574568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	42	2	1.32374	2.2764699999999998	3.2292	0.00606514	6.42291e-11	0.112302	8.88826e-9
chr12	6501621	6501721	6811293	0	+	0.42	(0.392,0.424]	chr12	621764	60	INTRON	INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	29	2	2.21757	2.276275	2.33498	6.67726e-5	2.27562e-5	0.00291649	0.00113521
chr22	39317372	39317460	10039638	0	-	0.590909	(0.57,0.629]	chr22	1001021	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	17	2	2.14758	2.274895	2.40221	0.0066476	0.00185505	0.116278	0.0474587
chr18	12512453	12512531	9181219	0	-	0.397436	(0.392,0.424]	chr18	884881	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000487491.1:ENST00000449797.5:ENST00000497844.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	23	2	2.11151	2.2747900000000003	2.43807	0.00109	4.10358e-5	0.0292159	0.00194446
chrX	31144194	31144294	10299816	0	-	0.46	(0.459,0.49]	chrX	1024218	52	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000481143.2:ENST00000378723.7:ENST00000681989.1:ENST00000681026.1:ENST00000679437.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000679850.1:ENST00000680701.1:ENST00000680557.1:ENST00000620040.5:ENST00000684072.1:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000684350.1:ENST00000682207.1:ENST00000682746.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000679706.1:ENST00000681153.1:ENST00000683503.1:ENST00000683995.1:ENST00000684342.1:ENST00000684103.1:ENST00000684247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	17	2	2.032	2.273015	2.51403	0.00595996	7.72473e-4	0.109289	0.0228237
chr4	151104239	151104286	2758536	0	+	0.340426	(0.32,0.36]	chr4	261998	1	CDS	CDS:UTR3:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000514682.5:ENST00000512690.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding	18	16	2	1.93649	2.272565	2.60864	0.00286131	0.00109434	0.0657137	0.0303704
chr16	2759661	2759752	8304841	0	+	0.494505	(0.49,0.526]	chr16	773126	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000575870.5:ENST00000573451.5:ENST00000570655.1:ENST00000573498.5:ENST00000572278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	97	153	2	2.22925	2.27216	2.31507	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	81690200	81690297	7399655	0	+	0.505155	(0.49,0.526]	chr13	683619	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PTMAP5	ENSG00000214182.5	ENST00000607242.1:ENST00000393073.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	8	14	2	2.01151	2.27212	2.53273	0.0107498	0.00358171	0.175404	0.0782109
chr12	52899674	52899774	7167359	0	-	0.56	(0.526,0.57]	chr12	659792	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KRT8	ENSG00000170421.13	ENST00000552551.5:ENST00000692008.1:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	27	2	2.01406	2.27192	2.52978	7.77124e-4	4.63029e-5	0.0227185	0.00214139
chrM	7685	7781	10480453	0	+	0.40625	(0.392,0.424]	chrM	1038993	1	CDS	CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	85	88	2	2.1141200000000002	2.271525	2.42893	5.54088e-11	1e-12	7.75403e-9	1.72912e-10
chr17	78803681	78803780	9019292	0	-	0.626263	(0.57,0.629]	chr17	871141	4	CDS	CDS:UTR3:EXON_MRNA	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	37	2	1.98942	2.2714350000000003	2.55345	1.99059e-4	3.13276e-6	0.0074717	1.95776e-4
chr17	4960785	4960853	8853218	0	-	0.470588	(0.459,0.49]	chr17	846121	1	CDS	CDS:UTR5:EXON_MRNA	SPAG7	ENSG00000091640.8	ENST00000206020.8:ENST00000575142.5:ENST00000573366.5:ENST00000575784.2:ENST00000573805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	46	2	2.26619	2.2700449999999996	2.2739	2.9832e-6	3.06564e-7	1.86821e-4	2.35102e-5
chr7	35903075	35903145	4366165	0	+	0.457143	(0.424,0.459]	chr7	393806	1	CDS	CDS:UTR3:EXON_MRNA	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000635175.1:ENST00000399035.7:ENST00000425198.1:ENST00000485569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	57	2	2.09262	2.265975	2.43933	1.4218e-7	4.01561e-9	1.17796e-5	4.34988e-7
chr16	70762952	70763025	8582964	0	-	0.589041	(0.57,0.629]	chr16	809671	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VAC14	ENSG00000103043.15	ENST00000261776.10:ENST00000568886.5:ENST00000568548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	39	2	2.18248	2.265765	2.34905	3.79347e-5	7.32815e-6	0.00179056	4.23209e-4
chr1	228400963	228401040	878140	0	-	0.701299	(0.629,1]	chr1	97731	1	CDS	CDS:EXON_MRNA:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	2.17063	2.26567	2.36071	0.00760441	7.67625e-5	0.130982	0.00331028
chr7	27785236	27785311	4335063	0	+	0.373333	(0.36,0.392]	chr7	392013	2	CDS	CDS:UTR3:EXON_MRNA	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	14	2	2.12138	2.26373	2.40608	0.00473563	0.00230379	0.0954457	0.0561481
chr17	38796571	38796671	8923218	0	-	0.46	(0.459,0.49]	chr17	855951	33	INTRON	INTRON	PIP4K2B	ENSG00000276293.5	ENST00000619039.5:ENST00000617781.1:ENST00000617499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	28	2	2.13499	2.262935	2.39088	3.1884e-4	3.96965e-5	0.0111666	0.00186899
chr11	57309966	57310064	6607083	0	-	0.55102	(0.526,0.57]	chr11	601801	17	CDS	CDS:UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000530920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	58	93	2	2.17801	2.2628950000000003	2.34778	1.4746e-10	1.97464e-12	1.92187e-8	3.31013e-10
chr12	112302069	112302169	7284614	0	-	0.53	(0.526,0.57]	chr12	671845	184	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	35	57	2	2.13582	2.26266	2.3895	1.16389e-6	8.55085e-9	7.98276e-5	8.79939e-7
chr3	179001360	179001460	2500730	0	-	0.52	(0.49,0.526]	chr3	239303	185	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1	protein_coding	protein_coding	protein_coding	protein_coding	28	45	2	1.8552	2.26078	2.66636	9.70258e-5	2.38495e-8	0.00401704	2.29158e-6
chr10	42796567	42796662	5840433	0	+	0.431579	(0.424,0.459]	chr10	524877	2	CDS	CDS:EXON_MRNA	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	53	62	2	2.19388	2.260275	2.32667	3.16803e-8	1.30271e-9	2.95062e-6	1.50929e-7
chr14	55652849	55652940	7628653	0	+	0.395604	(0.392,0.424]	chr14	702034	1	CDS	CDS:UTR3:EXON_MRNA	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5:ENST00000554507.5:ENST00000554890.1:ENST00000555164.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	135	138	2	2.23066	2.2602349999999998	2.28981	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	81549205	81549283	9030326	0	-	0.512821	(0.49,0.526]	chr17	872256	1	CDS	CDS:UTR3:EXON_MRNA	FAAP100	ENSG00000185504.17	ENST00000443656.6:ENST00000327787.13:ENST00000541246.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	25	2	2.18013	2.2597750000000003	2.33942	3.91305e-4	2.99217e-4	0.0131575	0.0106204
chr8	94969032	94969131	5026578	0	+	0.474747	(0.459,0.49]	chr8	451382	105	INTRON	INTRON	NDUFAF6	ENSG00000156170.13	ENST00000523378.5:ENST00000396113.5:ENST00000519136.5:ENST00000396111.6	protein_coding	protein_coding	protein_coding	protein_coding	15	22	2	2.03873	2.2595850000000004	2.48044	0.00125563	2.84436e-4	0.0336203	0.0100538
chr20	49287358	49287456	9669278	0	+	0.428571	(0.424,0.459]	chr20	955630	52	INTRON	INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	22	24	2	1.55593	2.25956	2.96319	0.00467755	1.11911e-5	0.0901733	6.01197e-4
chr9	70217288	70217383	5396114	0	+	0.473684	(0.459,0.49]	chr9	481903	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	MAMDC2:RPL24P8	ENSG00000165072.10:ENSG00000236801.1	ENST00000377182.5:ENST00000446071.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	16	26	2	1.93103	2.2589	2.58677	0.0116056	1.31271e-6	0.18628	8.95e-5
chrX	77652177	77652265	10383794	0	-	0.340909	(0.32,0.36]	chrX	1030476	1	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	157	131	2	2.13814	2.2588049999999997	2.37947	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	173943441	173943528	806939	0	-	0.517241	(0.49,0.526]	chr1	89898	1	CDS	CDS:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	39	62	2	1.94164	2.2564349999999997	2.57123	2.66695e-6	2.28164e-10	1.66834e-4	2.93413e-8
chr3	14170437	14170493	2181934	0	-	0.392857	(0.392,0.424]	chr3	213117	1	CDS	CDS:EXON_MRNA	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000455144.6:ENST00000452172.1:ENST00000511155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	25	2	2.10221	2.255125	2.40804	0.00193741	7.02061e-6	0.0476787	4.07349e-4
chr1	161891540	161891640	319084	0	+	0.48	(0.459,0.49]	chr1	36135	31	INTRON	INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	22	2	1.81673	2.25354	2.69035	0.00468081	5.86109e-5	0.0901733	0.00262682
chr14	30935162	30935233	7792793	0	-	0.521127	(0.49,0.526]	chr14	717546	1	CDS	CDS:EXON_MRNA	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	49	77	2	2.25352	2.253525	2.25353	3.59048e-9	2.02248e-10	3.92357e-7	2.61056e-8
chr5	150742113	150742157	3639681	0	-	0.545455	(0.526,0.57]	chr5	331011	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000521728.5:ENST00000519313.5:ENST00000518015.5:ENST00000521448.5:ENST00000521533.1:ENST00000521093.1:ENST00000517421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	30	2	1.64375	2.252925	2.8621	0.00952582	1.8954e-7	0.156887	1.52747e-5
chr2	189924020	189924118	1239149	0	+	0.469388	(0.459,0.49]	chr2	130086	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	17	25	2	2.16192	2.252725	2.34353	4.73991e-4	1.5098e-4	0.015567	0.00579694
chr8	144792312	144792403	5311851	0	-	0.626374	(0.57,0.629]	chr8	475346	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL8	ENSG00000161016.18	ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000262584.7:ENST00000532702.1:ENST00000525232.5:ENST00000531767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	41	2	2.11798	2.2521750000000003	2.38637	1.04867e-4	1.05946e-6	0.0043441	7.36136e-5
chr3	191375061	191375149	2144154	0	+	0.5	(0.49,0.526]	chr3	210012	1	CDS	CDS:EXON_MRNA:INTRON	CCDC50	ENSG00000152492.15	ENST00000392456.4:ENST00000392455.9	protein_coding	protein_coding	protein_coding	protein_coding	22	34	2	1.53591	2.251525	2.96714	0.00353019	1.37524e-7	0.0751262	1.1446300000000001e-05
chr2	101002228	101002322	1105202	0	+	0.542553	(0.526,0.57]	chr2	118458	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	95	150	2	2.23056	2.251365	2.27217	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	152663103	152663172	1581719	0	-	0.42029	(0.392,0.424]	chr2	163802	2	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000472760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	89	91	2	2.16579	2.251185	2.33658	1.8454e-11	1e-12	2.73277e-9	1.73382e-10
chr9	137045989	137046083	5769234	0	-	0.819149	(0.629,1]	chr9	519127	1	UTR5	UTR5:EXON_MRNA	NPDC1	ENSG00000107281.10	ENST00000371601.5:ENST00000488145.1:ENST00000485589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	34	2	1.99212	2.25107	2.51002	7.79495e-4	5.33655e-5	0.0230228	0.00244387
chr17	62627802	62627902	8769243	0	+	0.81	(0.629,1]	chr17	834488	1	CDS_START	CDS_START:CDS:EXON_MRNA	MRC2	ENSG00000011028.14	ENST00000303375.10:ENST00000584265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	58	2	1.51018	2.249235	2.98829	2.26078e-4	2.11181e-8	0.00827447	2.05739e-6
chr12	31083889	31083966	6863395	0	+	0.480519	(0.459,0.49]	chr12	626678	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000535317.5:ENST00000544652.1:ENST00000538345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	18	2	2.23403	2.24829	2.26255	0.00319711	0.0010474	0.0724767	0.0292314
chr1	228102642	228102688	877594	0	-	0.586957	(0.57,0.629]	chr1	97669	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C1orf35	ENSG00000143793.13	ENST00000469781.5:ENST00000272139.5:ENST00000485896.5:ENST00000472617.5:ENST00000492757.5:ENST00000465199.5:ENST00000491293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	32	2	1.67318	2.2476849999999997	2.82219	0.00548201	5.30936e-7	0.104315	3.91767e-5
chr3	52529149	52529225	2283786	0	-	0.592105	(0.57,0.629]	chr3	222993	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	NT5DC2	ENSG00000168268.11	ENST00000307076.8:ENST00000422318.7:ENST00000492555.5:ENST00000459839.5:ENST00000489316.5:ENST00000471522.5:ENST00000487779.5:ENST00000490681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	34	64	2	2.12385	2.2475050000000003	2.37116	3.40529e-7	8.92993e-9	2.60529e-5	9.2083500000000005e-07
chr7	148767618	148767683	4576389	0	+	0.384615	(0.36,0.392]	chr7	411552	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	12	2	2.07737	2.2474	2.41743	0.00949718	0.00444188	0.16275	0.0875511
chr8	143837457	143837509	5306835	0	-	0.557692	(0.526,0.57]	chr8	474244	2	CDS	CDS:EXON_MRNA	NRBP2	ENSG00000185189.18	ENST00000442628.7:ENST00000533093.5:ENST00000529747.5:ENST00000423469.6:ENST00000532940.5:ENST00000533846.5:ENST00000531729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	17	2	2.1093	2.24723	2.38516	0.00834853	0.00135608	0.145988	0.0357597
chr9	95083219	95083315	5438547	0	+	0.604167	(0.57,0.629]	chr9	485349	1	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000471978.5:ENST00000478473.1:ENST00000463372.5:ENST00000468164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	29	55	2	2.159	2.24633	2.33366	4.77853e-6	3.51571e-8	2.82186e-4	3.23881e-6
chrM	8526	8626	10480462	0	+	0.49	(0.459,0.49]	chrM	1038998	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	MT-ATP8:MT-ATP6	ENSG00000228253.1:ENSG00000198899.2	ENST00000361851.1:ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	141	194	2	2.23839	2.2461349999999998	2.25388	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	154602342	154602437	771431	0	-	0.610526	(0.57,0.629]	chr1	84810	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1:ENST00000526905.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	27	2	1.55068	2.243855	2.93703	0.0112891	4.08048e-6	0.181488	2.48496e-4
chr20	37732878	37732929	9645824	0	+	0.568627	(0.526,0.57]	chr20	952591	1	CDS	CDS:UTR5:EXON_MRNA	CTNNBL1	ENSG00000132792.19	ENST00000405275.6:ENST00000621317.4:ENST00000361383.11:ENST00000447935.3:ENST00000628103.2	protein_coding	protein_coding	protein_coding	protein_coding	16	25	2	1.63163	2.24322	2.85481	0.0050522	2.35719e-5	0.0962902	0.00119414
chrX	47240586	47240595	10123978	0	+	0.333333	(0.32,0.36]	chrX	1009503	1	CDS	CDS:UTR5:EXON_MRNA	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000377107.7:ENST00000469080.5:ENST00000377080.7:ENST00000377078.2:ENST00000489111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	29	2	1.95188	2.2423900000000003	2.5329	8.9289e-4	6.44476e-7	0.025217	4.68537e-5
chr2	200958029	200958123	1668760	0	-	0.382979	(0.36,0.392]	chr2	171472	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000467605.5:ENST00000410039.5:ENST00000457595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	23	2	2.13693	2.24216	2.34739	4.94797e-4	9.75724e-5	0.0161742	0.0040555
chr5	71510257	71510357	3208057	0	+	0.47	(0.459,0.49]	chr5	296025	9	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	59	2	2.14168	2.240715	2.33975	2.25288e-7	1.12042e-8	1.8158e-5	1.12845e-6
chr21	45192676	45192776	9829516	0	+	0.37	(0.36,0.392]	chr21	975129	72	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	21	2	1.71975	2.240495	2.76124	0.00171842	1.80024e-4	0.0446411	0.00685909
chr10	96750724	96750811	5949782	0	+	0.517241	(0.49,0.526]	chr10	533632	6	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	39	61	2	2.22886	2.24036	2.25186	1.73121e-7	1.30437e-8	1.42451e-5	1.29787e-6
chr16	57788655	57788713	8564816	0	-	0.603448	(0.57,0.629]	chr16	806574	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000565481.5:ENST00000562503.5:ENST00000562311.5:ENST00000569112.5:ENST00000562984.5:ENST00000567204.5:ENST00000566648.5:ENST00000561524.5:ENST00000566975.5:ENST00000565684.5:ENST00000566914.1:ENST00000567059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	31	2	2.18248	2.240175	2.29787	5.26944e-4	3.79347e-5	0.0168102	0.00179056
chr1	212618126	212618180	426261	0	+	0.407407	(0.392,0.424]	chr1	45932	1	CDS	CDS:EXON_MRNA:INTRON	ATF3	ENSG00000162772.17	ENST00000366987.6:ENST00000366981.8:ENST00000613954.4:ENST00000465155.5:ENST00000341491.9:ENST00000366985.5:ENST00000492118.2:ENST00000464547.5:ENST00000366983.5:ENST00000336937.8:ENST00000613104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	35	2	2.15862	2.239805	2.32099	7.19713e-5	1.4141e-6	0.00311955	9.60174e-5
chr1	220150658	220150757	862268	0	-	0.50505	(0.49,0.526]	chr1	95753	25	UTR3	UTR3:EXON_MRNA	RAB3GAP2	ENSG00000118873.17	ENST00000358951.7:ENST00000687065.1:ENST00000686381.1:ENST00000687647.1:ENST00000692972.1:ENST00000690315.1:ENST00000691862.1:ENST00000691661.1:ENST00000690373.1:ENST00000491005.6:ENST00000693602.1:ENST00000692813.1:ENST00000685286.1:ENST00000688035.1:ENST00000474966.2:ENST00000491305.2:ENST00000685664.1:ENST00000690824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	14	2	2.19165	2.239065	2.28648	0.00771297	0.00563369	0.130982	0.104784
chr7	44014501	44014595	4708772	0	-	0.712766	(0.629,1]	chr7	421660	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	23	2	1.61335	2.23753	2.86171	0.008867	8.48224e-4	0.146312	0.0240064
chr12	29381101	29381189	7129051	0	-	0.568182	(0.526,0.57]	chr12	654734	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ERGIC2	ENSG00000087502.19	ENST00000360150.9:ENST00000552155.5:ENST00000546839.5:ENST00000550353.5:ENST00000552132.5:ENST00000548441.1	protein_coding	protein_coding	protein_coding	protein_coding	17	28	2	2.19891	2.237035	2.27516	1.95736e-4	1.62555e-4	0.00742406	0.00620143
chr10	119051198	119051259	6271903	0	-	0.442623	(0.424,0.459]	chr10	561044	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	27	35	2	1.58133	2.235715	2.8901	0.00847392	6.95264e-10	0.140721	8.32322e-8
chr17	51259206	51259306	8966593	0	-	0.43	(0.424,0.459]	chr17	863060	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000405860.7:ENST00000591270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	17	2	2.18418	2.23571	2.28724	0.00227848	0.00158197	0.0555721	0.041196
chr16	70512267	70512336	8581801	0	-	0.536232	(0.526,0.57]	chr16	809506	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000562200.5:ENST00000564653.6:ENST00000534772.1:ENST00000530160.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	28	2	2.17021	2.2335149999999997	2.29682	4.13969e-4	7.50943e-5	0.013778200000000001	0.00323878
chr22	28501366	28501466	10006317	0	-	0.36	(0.32,0.36]	chr22	996542	584	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	89	75	2	2.10553	2.233015	2.3605	2.44745e-10	1.88705e-11	3.12774e-8	2.7928e-9
chr12	92857430	92857479	7235263	0	-	0.469388	(0.459,0.49]	chr12	667149	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EEA1	ENSG00000102189.17	ENST00000322349.13:ENST00000418984.7:ENST00000547833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	24	2	2.02424	2.22835	2.43246	5.37064e-4	3.67672e-4	0.0171246	0.0124513
chr14	69984841	69984941	7682892	0	+	0.43	(0.424,0.459]	chr14	706232	65	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	13	16	2	2.20128	2.22834	2.2554	0.00473715	0.00139817	0.0954457	0.0366234
chr12	123001105	123001158	7310191	0	-	0.54717	(0.526,0.57]	chr12	675220	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PITPNM2	ENSG00000090975.14	ENST00000320201.10:ENST00000280562.9:ENST00000436074.6:ENST00000546049.5:ENST00000451868.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	28	2	1.7917	2.227295	2.66289	5.57831e-4	1.11166e-4	0.0177078	0.00456822
chr11	65425868	65425968	6415899	0	+	0.26	[0,0.32]	chr11	577189	32	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	20	17	2	2.05131	2.227035	2.40276	0.0029547	5.11156e-4	0.0678393	0.0164209
chr1	63457033	63457133	640442	0	-	0.41	(0.392,0.424]	chr1	71308	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	22	2	2.20045	2.22358	2.24671	4.03557e-4	3.68023e-4	0.0138446	0.0124577
chr12	46192945	46193044	7152171	0	-	0.333333	(0.32,0.36]	chr12	656572	35	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	52	44	2	2.21469	2.22228	2.22987	9.80382e-6	2.15533e-8	5.46684e-4	2.09062e-6
chr7	92079175	92079273	4470248	0	+	0.367347	(0.36,0.392]	chr7	401416	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000674381.2:ENST00000359028.7:ENST00000491695.2:ENST00000681216.1:ENST00000680365.1:ENST00000394534.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	27	2	2.07027	2.221155	2.37204	2.04325e-4	2.75831e-5	0.00764351	0.00136098
chr4	151102873	151102973	2758521	0	+	0.4	(0.392,0.424]	chr4	261994	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	11	2	2.13674	2.219875	2.30301	0.0122095	0.0089511	0.186377	0.155806
chrM	3784	3879	10480420	0	+	0.431579	(0.424,0.459]	chrM	1038988	6	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	30	35	2	1.96169	2.219145	2.4766	2.16954e-4	5.14947e-7	0.00797283	3.80317e-5
chr1	58692860	58692931	636716	0	-	0.408451	(0.392,0.424]	chr1	70792	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000472487.6:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000483003.5:ENST00000489282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	19	2	1.97509	2.218375	2.46166	0.00113806	0.00101966	0.030384	0.0284847
chr12	132050390	132050459	7058085	0	+	0.478261	(0.459,0.49]	chr12	647348	2	CDS	CDS:EXON_MRNA	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	16	2	2.08544	2.2178050000000002	2.35017	0.00454135	0.00286318	0.0879706	0.0662445
chr4	13604786	13604885	2841354	0	-	0.393939	(0.392,0.424]	chr4	269119	60	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	50	49	2	1.65022	2.21614	2.78206	9.16606e-5	1.42876e-10	0.00387333	1.89285e-8
chr6	32187646	32187714	4038169	0	-	0.544118	(0.526,0.57]	chr6	367093	1	CDS	CDS:EXON_MRNA	PBX2	ENSG00000204304.12	ENST00000375050.6:ENST00000478678.5:ENST00000496171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	28	2	1.51378	2.2161049999999998	2.91843	0.00779959	2.23254e-6	0.131211	1.43796e-4
chr15	98922147	98922241	8095771	0	+	0.56383	(0.526,0.57]	chr15	748579	1	CDS	CDS:UTR3:EXON_MRNA	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000560144.1:ENST00000561049.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	100	153	2	1.91521	2.215885	2.51656	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	48934463	48934537	10339700	0	-	0.513514	(0.49,0.526]	chrX	1026518	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	36	2	2.06688	2.2145599999999996	2.36224	4.17351e-5	1.74704e-5	0.00194016	8.96757e-4
chr12	7115784	7115883	6815019	0	+	0.515152	(0.49,0.526]	chr12	622817	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	C1RL-AS1	ENSG00000205885.8	ENST00000541775.5:ENST00000535078.2:ENST00000382215.3	lncRNA	lncRNA	lncRNA	lncRNA	37	58	2	1.95252	2.21402	2.47552	1.05689e-5	6.37362e-10	5.88684e-4	7.722e-8
chr19	35723180	35723274	9331798	0	+	0.585106	(0.57,0.629]	chr19	905311	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2B	ENSG00000272333.8	ENST00000673918.2:ENST00000420124.4:ENST00000692961.1:ENST00000691855.1:ENST00000689139.1:ENST00000674114.2:ENST00000685062.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	75	2	1.84495	2.213065	2.58118	2.21065e-7	2.65984e-10	1.7414e-5	3.36106e-8
chr19	6414842	6414932	9421961	0	-	0.655556	(0.629,1]	chr19	922394	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000597656.5:ENST00000595223.5:ENST00000594496.5	protein_coding	protein_coding	protein_coding	protein_coding	15	41	2	2.1936	2.21266	2.23172	2.90401e-4	1.16919e-5	0.0102379	6.1789e-4
chr5	5461333	5461433	3112643	0	+	0.39	(0.36,0.392]	chr5	288389	10	CDS	CDS:EXON_MRNA	ICE1	ENSG00000164151.12	ENST00000296564.9	protein_coding	protein_coding	protein_coding	protein_coding	29	30	2	1.7717	2.211645	2.65159	0.00792146	2.05227e-8	0.13917	1.9718e-6
chr20	45420311	45420370	9660781	0	+	0.610169	(0.57,0.629]	chr20	954478	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGT	ENSG00000124155.19	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000424705.3:ENST00000640549.2:ENST00000692236.1:ENST00000689203.1:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638691.2:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000639292.2:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000639872.1:ENST00000640649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	18	2	2.18215	2.209845	2.23754	0.00481149	0.00235627	0.0964485	0.0567822
chr1	36296676	36296770	109289	0	+	0.425532	(0.424,0.459]	chr1	12501	2	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	182	202	2	2.0086	2.207375	2.40615	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	25070446	25070528	7927956	0	+	0.439024	(0.424,0.459]	chr15	731711	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000655143.1:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000551077.2:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1	lncRNA	lncRNA	lncRNA	lncRNA	23	27	2	1.58412	2.206565	2.82901	0.00784639	5.90187e-7	0.137957	4.30432e-5
chr4	13604390	13604489	2841350	0	-	0.313131	[0,0.32]	chr4	269119	56	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	29	24	2	1.54912	2.206355	2.86359	0.0100036	6.71629e-7	0.170122	4.87802e-5
chr1	114709568	114709648	732494	0	-	0.475	(0.459,0.49]	chr1	78523	1	CDS	CDS:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	23	32	2	1.9841	2.206215	2.42833	2.47869e-4	1.05077e-5	0.00896397	5.85385e-4
chr13	52461737	52461831	7387867	0	+	0.351064	(0.32,0.36]	chr13	682621	7	CDS	CDS:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378034.7:ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	29	25	2	2.17389	2.20428	2.23467	2.62243e-4	6.92794e-5	0.00940977	0.00301346
chr17	7307610	7307681	8639901	0	+	0.774648	(0.629,1]	chr17	816547	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000355068.4:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000575001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	66	2	2.0393	2.203755	2.36821	2.05983e-6	1.15326e-7	1.34285e-4	9.64989e-6
chr1	121342319	121342419	281482	0	+	0.39	(0.36,0.392]	chr1	28926	173	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	22	20	2	2.01475	2.2028499999999998	2.39095	7.58052e-4	6.34703e-4	0.0225125	0.0193151
chr17	28720797	28720890	8685345	0	+	0.612903	(0.57,0.629]	chr17	822051	2	CDS	CDS:UTR5:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	651	1148	2	2.19896	2.20097	2.20298	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	4983118	4983213	1754788	0	+	0.610526	(0.57,0.629]	chr3	179818	4	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	43	2	1.5748	2.199635	2.82447	0.00210478	1.05558e-8	0.0530328	1.06963e-6
chr1	108604538	108604637	249302	0	+	0.454545	(0.424,0.459]	chr1	25200	35	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	17	20	2	2.02912	2.19719	2.36526	0.00263877	2.91554e-4	0.063118	0.0102737
chr22	40636477	40636557	10042013	0	-	0.7875	(0.629,1]	chr22	1001169	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1:ENST00000651158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	26	2	2.0506	2.1971350000000003	2.34367	0.00602676	2.45902e-4	0.111617	0.0089494
chr17	38852928	38852994	8923578	0	-	0.5	(0.49,0.526]	chr17	856036	2	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL23:SNORA21	ENSG00000125691.14:ENSG00000199293.1	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1:ENST00000584056.1:ENST00000362423.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron	32	49	2	2.13111	2.19674	2.26237	2.21729e-6	6.90571e-7	1.43493e-4	5.00097e-5
chr7	2379133	2379187	4285384	0	+	0.5	(0.49,0.526]	chr7	388529	1	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1:ENST00000494658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	32	2	2.00751	2.1952249999999998	2.38294	1.15955e-4	5.84113e-5	0.00467642	0.00265537
chr22	38298694	38298790	10035192	0	-	0.666667	(0.629,1]	chr22	1000269	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000431632.5:ENST00000403904.5:ENST00000431611.5:ENST00000413574.6:ENST00000405675.7:ENST00000612795.2:ENST00000498529.5:ENST00000442216.1:ENST00000451964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	31	2	1.60048	2.19419	2.7879	0.00283245	1.43917e-4	0.0662445	0.00564049
chr2	37287365	37287464	1417852	0	-	0.393939	(0.392,0.424]	chr2	147563	6	INTRON	INTRON	PRKD3	ENSG00000115825.11	ENST00000234179.8:ENST00000379066.5:ENST00000494667.5:ENST00000475912.1:ENST00000443187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	25	2	2.01784	2.1940749999999998	2.37031	3.09687e-4	1.19792e-4	0.0109114	0.00487701
chr2	151465433	151465531	1174455	0	+	0.367347	(0.36,0.392]	chr2	124436	27	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	31	2	2.19122	2.193705	2.19619	3.54955e-5	2.22736e-5	0.00170529	0.00111169
chr9	113408983	113409083	5699275	0	-	0.48	(0.459,0.49]	chr9	511385	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1:ENST00000475080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	44	2	1.6967	2.19314	2.68958	0.00162081	4.196e-10	0.040872	5.21928e-8
chr1	110012947	110012999	254588	0	+	0.480769	(0.459,0.49]	chr1	26198	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	29	2	2.00459	2.19261	2.38063	2.56286e-4	6.19177e-5	0.00911512	0.00274668
chr6	47609213	47609304	3791614	0	+	0.384615	(0.36,0.392]	chr6	347860	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5:ENST00000486693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	13	2	1.96682	2.192125	2.41743	0.00728196	0.00444188	0.128637	0.0875511
chr5	38832088	38832188	3446849	0	-	0.53	(0.526,0.57]	chr5	317213	90	INTRON	INTRON	OSMR-DT	ENSG00000249740.4	ENST00000662290.1:ENST00000636516.2:ENST00000685305.1:ENST00000513480.1:ENST00000688648.1:ENST00000654447.1:ENST00000660306.1	lncRNA	lncRNA	lncRNA	lncRNA	14	23	2	1.73096	2.190305	2.64965	0.00982663	3.36229e-5	0.16817	0.00159406
chr8	38347496	38347591	5159165	0	-	0.378947	(0.36,0.392]	chr8	462077	1	CDS	CDS:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1	protein_coding	protein_coding	protein_coding	protein_coding	48	43	2	2.14982	2.1891350000000003	2.22845	1.06464e-6	9.57209e-7	7.36955e-5	6.73119e-5
chr6	130052858	130052924	3882541	0	+	0.424242	(0.392,0.424]	chr6	354841	1	CDS	CDS:EXON_MRNA	L3MBTL3	ENSG00000198945.8	ENST00000361794.7:ENST00000533560.5:ENST00000528385.5:ENST00000368139.6:ENST00000526019.5:ENST00000368136.3	protein_coding	protein_coding	protein_coding	protein_coding	27	27	2	2.13343	2.188115	2.2428	2.09291e-4	6.0063e-5	0.00773314	0.0026803
chr3	10141777	10141847	1761259	0	+	0.8	(0.629,1]	chr3	181167	1	UTR5	UTR5:EXON_MRNA	VHL	ENSG00000134086.9	ENST00000696153.1:ENST00000256474.3:ENST00000696142.1:ENST00000345392.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	17	2	1.904	2.18784	2.47168	0.0125401	0.00639682	0.199657	0.114061
chr6	38061592	38061683	3773004	0	+	0.417582	(0.392,0.424]	chr6	345079	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5:ENST00000469208.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	62	62	2	1.99058	2.18512	2.37966	1.08462e-6	3.49115e-11	7.56764e-5	5.01503e-9
chr11	2971534	2971634	6538650	0	-	0.24	[0,0.32]	chr11	593831	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5	protein_coding	protein_coding	protein_coding	protein_coding	46	36	2	2.09569	2.184135	2.27258	1.97772e-5	1.89496e-6	0.00100168	1.23838e-4
chr16	18401583	18401668	8523022	0	-	0.8	(0.629,1]	chr16	800200	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P5	ENSG00000254681.6	ENST00000532415.5:ENST00000544578.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	20	2	2.0506	2.183805	2.31701	0.00602676	0.0035501	0.111617	0.0776459
chr15	40393794	40393893	7947989	0	+	0.535354	(0.526,0.57]	chr15	734194	3	UTR3	UTR3:EXON_MRNA	KNSTRN	ENSG00000128944.14	ENST00000249776.13:ENST00000560981.5:ENST00000416151.6:ENST00000448395.6:ENST00000608100.5:ENST00000561169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	25	2	2.05817	2.183415	2.30866	6.83947e-4	3.64634e-4	0.0205444	0.012633
chr10	103440733	103440791	5969482	0	+	0.551724	(0.526,0.57]	chr10	536295	1	CDS	CDS:EXON_MRNA	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	54	81	2	1.59245	2.182255	2.77206	7.29672e-6	1e-12	4.2016e-4	1.72912e-10
chr19	49104633	49104684	9373312	0	+	0.529412	(0.526,0.57]	chr19	912720	1	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	42	2	1.78393	2.181755	2.57958	3.13221e-4	9.181e-8	0.0107365	7.86986e-6
chr11	62825282	62825339	6617782	0	-	0.421053	(0.392,0.424]	chr11	604287	1	CDS	CDS:UTR3:EXON_MRNA	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1:ENST00000431400.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	21	2	1.7959	2.180695	2.56549	0.00838375	2.23472e-5	0.140625	0.00113549
chrM	6483	6579	10480442	0	+	0.541667	(0.526,0.57]	chrM	1038991	6	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	169	254	2	2.01102	2.1806799999999997	2.35034	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	13577581	13577631	2841067	0	-	0.3	[0,0.32]	chr4	269047	1	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10:ENST00000507943.1:ENST00000505343.1:ENST00000509897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	25	2	1.54507	2.17944	2.81381	0.0105328	3.28577e-7	0.172254	2.51625e-5
chr6	89668082	89668151	4128112	0	-	0.434783	(0.424,0.459]	chr6	376186	2	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	20	23	2	2.07506	2.17903	2.283	0.00149259	1.08545e-4	0.0388204	0.00442392
chr13	45975374	45975467	7515415	0	-	0.537634	(0.526,0.57]	chr13	691139	2	CDS	CDS:EXON_MRNA	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	79	118	2	2.00025	2.1788049999999997	2.35736	3.83527e-12	1e-12	6.2025e-10	1.72912e-10
chr17	40628884	40628938	8928305	0	-	0.592593	(0.57,0.629]	chr17	856871	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SMARCE1	ENSG00000073584.20	ENST00000348513.12:ENST00000643318.1:ENST00000644527.1:ENST00000646242.1:ENST00000578112.6:ENST00000647508.1:ENST00000644701.1:ENST00000643030.1:ENST00000646401.1:ENST00000580419.6:ENST00000645227.1:ENST00000643378.1:ENST00000647294.1:ENST00000642576.1:ENST00000400122.8:ENST00000647515.1:ENST00000377808.9:ENST00000644523.1:ENST00000469334.6:ENST00000643683.1:ENST00000644443.1:ENST00000646283.1:ENST00000264640.9:ENST00000643893.1:ENST00000644909.1:ENST00000645152.1:ENST00000646856.1:ENST00000431889.6:ENST00000646448.1:ENST00000578044.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	35	2	2.17307	2.177775	2.18248	1.26592e-4	3.79347e-5	0.00509389	0.00179056
chr13	113236128	113236225	7453253	0	+	0.484536	(0.459,0.49]	chr13	686452	6	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9	protein_coding	protein_coding	protein_coding	protein_coding	8	12	2	2.13538	2.177695	2.22001	0.0128493	0.0100465	0.195714	0.170122
chr13	113187428	113187526	7568210	0	-	0.612245	(0.57,0.629]	chr13	696365	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCID2	ENSG00000126226.22	ENST00000337344.9:ENST00000622406.4:ENST00000375479.6:ENST00000375477.5:ENST00000246505.9:ENST00000375459.5:ENST00000493650.5:ENST00000375457.2:ENST00000475433.5:ENST00000480971.5:ENST00000484641.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	19	2	2.04119	2.176595	2.312	0.00318262	0.00268566	0.0699484	0.063945
chr15	63190248	63190347	8001084	0	+	0.585859	(0.57,0.629]	chr15	739743	1	INTRON	INTRON	RAB8B	ENSG00000166128.13	ENST00000558990.5:ENST00000558119.5:ENST00000559927.1:ENST00000321437.9:ENST00000559006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	19	2	2.04119	2.176595	2.312	0.00318262	0.00268566	0.0699484	0.063945
chr1	1624805	1624901	2927	0	+	0.6875	(0.629,1]	chr1	813	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MIB2	ENSG00000197530.13	ENST00000479659.5:ENST00000489635.5:ENST00000355826.10:ENST00000505820.7:ENST00000518681.6:ENST00000520777.6:ENST00000511502.5:ENST00000514363.1:ENST00000487053.5:ENST00000502470.5:ENST00000378712.5:ENST00000510793.5:ENST00000504599.6:ENST00000507229.5:ENST00000503789.5:ENST00000378708.5:ENST00000506488.5:ENST00000512004.1:ENST00000514234.5:ENST00000467597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	20	2	2.09939	2.1763399999999997	2.25329	0.00559835	0.00408309	0.104204	0.0825355
chrX	47464326	47464426	10337025	0	-	0.5	(0.49,0.526]	chrX	1025990	75	INTRON	INTRON	ZNF41	ENSG00000147124.13	ENST00000684689.1:ENST00000377065.8:ENST00000313116.11:ENST00000432977.1:ENST00000465311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	35	2	2.08887	2.1763	2.26373	4.71968e-5	3.66048e-5	0.00217897	0.00172971
chr11	57303479	57303577	6607017	0	-	0.612245	(0.57,0.629]	chr11	601798	1	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	24	2	2.0355	2.175765	2.31603	9.61681e-4	8.73235e-4	0.0272743	0.0246792
chr18	50285001	50285083	9228961	0	-	0.560976	(0.526,0.57]	chr18	888782	1	CDS	CDS:EXON_MRNA	CXXC1	ENSG00000154832.16	ENST00000412036.6:ENST00000285106.11:ENST00000589940.5:ENST00000590901.5:ENST00000589548.6:ENST00000673786.1:ENST00000590234.5:ENST00000591190.5:ENST00000591474.5:ENST00000592078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	46	2	1.98099	2.175245	2.3695	2.01163e-5	4.17191e-7	0.00101851	3.12567e-5
chr3	66139681	66139781	1914276	0	+	0.33	(0.32,0.36]	chr3	194009	53	INTRON	INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1	protein_coding	protein_coding	protein_coding	protein_coding	16	14	2	2.15346	2.1740649999999997	2.19467	0.00665607	0.0023994	0.118959	0.0577748
chr9	76571805	76571905	5405081	0	+	0.79	(0.629,1]	chr9	482528	56	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	65	164	2	1.80101	2.173855	2.5467	1.22511e-10	1e-12	1.61635e-8	1.73382e-10
chr6	165880936	165881036	4269556	0	-	0.29	[0,0.32]	chr6	386913	71	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	23	2	1.79519	2.173795	2.5524	6.87993e-4	1.44154e-4	0.020945	0.00564049
chr12	54281385	54281443	6916375	0	+	0.482759	(0.459,0.49]	chr12	631305	1	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	51	68	2	2.09736	2.17376	2.25016	1.52368e-7	4.56e-10	1.25939e-5	5.65237e-8
chr9	128352637	128352692	5501555	0	+	0.581818	(0.57,0.629]	chr9	492228	1	CDS	CDS:EXON_MRNA:INTRON	SLC27A4	ENSG00000167114.13	ENST00000300456.5:ENST00000372870.5	protein_coding	protein_coding	protein_coding	protein_coding	9	17	2	2.04119	2.173485	2.30578	0.0076713	0.00318262	0.130982	0.0699484
chr6	4037483	4037570	3690596	0	+	0.505747	(0.49,0.526]	chr6	336374	2	CDS	CDS:EXON_MRNA	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	363	529	2	2.16421	2.172935	2.18166	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	39460631	39460712	115557	0	+	0.37037	(0.36,0.392]	chr1	13385	1	CDS	CDS:EXON_MRNA	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000683517.1:ENST00000691623.1:ENST00000360115.8:ENST00000497964.1:ENST00000446276.5:ENST00000693392.1:ENST00000686657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	15	2	2.03579	2.17293	2.31007	0.00635025	0.00146177	0.114061	0.0384111
chr3	14168256	14168318	2181911	0	-	0.5	(0.49,0.526]	chr3	213111	1	CDS	CDS:EXON_MRNA:INTRON	XPC	ENSG00000154767.15	ENST00000285021.12:ENST00000476581.6:ENST00000455144.6:ENST00000452172.1:ENST00000511155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	28	2	1.76993	2.171275	2.57262	0.00298583	1.06619e-5	0.0683104	5.75166e-4
chr12	54029862	54029962	6915695	0	+	0.62	(0.57,0.629]	chr12	631214	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HOXC6:HOXC4	ENSG00000197757.8:ENSG00000198353.8	ENST00000394331.3:ENST00000303406.4:ENST00000243108.5	protein_coding	protein_coding	protein_coding	protein_coding	14	24	2	1.62486	2.170415	2.71597	0.00590836	1.52639e-4	0.109519	0.00584109
chr17	8444271	8444357	8643729	0	+	0.348837	(0.32,0.36]	chr17	817970	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NDEL1	ENSG00000166579.16	ENST00000582812.5:ENST00000580237.5:ENST00000582665.5:ENST00000579880.5:ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000584866.1:ENST00000582490.5:ENST00000580738.5:ENST00000583066.5:ENST00000580012.1:ENST00000581189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	30	2	1.93741	2.170395	2.40338	2.42846e-4	4.50765e-6	0.00885991	2.71234e-4
chr12	20413924	20414024	6842503	0	+	0.4	(0.392,0.424]	chr12	625044	433	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	24	2	2.12565	2.16636	2.20707	3.49876e-4	2.20759e-4	0.0119354	0.00820203
chr19	54458102	54458167	9386758	0	+	0.553846	(0.526,0.57]	chr19	915847	1	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	39	59	2	2.13956	2.1657	2.19184	3.63892e-7	7.52131e-8	2.76889e-5	6.57573e-6
chr2	197494752	197494842	1663954	0	-	0.377778	(0.36,0.392]	chr2	171000	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	44	2	2.14985	2.1650099999999997	2.18017	5.73122e-6	1.42574e-7	3.35917e-4	1.18092e-5
chr16	67082212	67082275	8407645	0	+	0.507937	(0.49,0.526]	chr16	786815	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000566281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	45	2	2.10819	2.1614500000000003	2.21471	1.32541e-5	1.19232e-6	7.11541e-4	8.2089e-5
chr1	217619871	217619961	858962	0	-	0.311111	[0,0.32]	chr1	95428	2	CDS	CDS:EXON_MRNA	GPATCH2	ENSG00000092978.11	ENST00000366935.8:ENST00000366934.3	protein_coding	protein_coding	protein_coding	protein_coding	39	30	2	1.87855	2.161285	2.44402	1.7545e-4	7.34174e-6	0.006785	4.22589e-4
chr12	46193044	46193143	7152172	0	-	0.414141	(0.392,0.424]	chr12	656572	36	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	39	38	2	1.87218	2.160505	2.44883	1.03157e-4	2.76489e-7	0.00427825	2.16301e-5
chr16	72096821	72096915	8430284	0	+	0.595745	(0.57,0.629]	chr16	790109	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000566794.5:ENST00000268482.8:ENST00000579387.5:ENST00000566489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	42	2	1.72417	2.15996	2.59575	3.82074e-4	4.73826e-7	0.0132244	3.54854e-5
chr7	100687980	100688045	4791298	0	-	0.523077	(0.49,0.526]	chr7	429804	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GIGYF1	ENSG00000146830.11	ENST00000678049.1:ENST00000646601.1:ENST00000275732.5:ENST00000471340.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	88	129	2	2.01892	2.15985	2.30078	3.84237e-12	1e-12	6.21063e-10	1.72912e-10
chrX	136874712	136874798	10448009	0	-	0.360465	(0.36,0.392]	chrX	1035608	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	26	2	1.93948	2.158595	2.37771	2.39672e-4	9.56018e-5	0.00867534	0.00399919
chr7	35898298	35898383	4366117	0	+	0.423529	(0.392,0.424]	chr7	393804	2	CDS	CDS:UTR3:EXON_MRNA	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000635175.1:ENST00000399035.7:ENST00000425198.1:ENST00000492940.1:ENST00000485569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	51	2	1.77077	2.15792	2.54507	9.42296e-5	7.48983e-11	0.00396233	1.02429e-8
chr3	37286013	37286061	1828523	0	+	0.375	(0.36,0.392]	chr3	185071	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000419177.3:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	23	2	1.67051	2.157645	2.64478	0.00318852	2.89271e-5	0.0699484	0.00142258
chr12	56116896	56116993	6920913	0	+	0.525773	(0.49,0.526]	chr12	632310	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL41	ENSG00000229117.9	ENST00000501597.3:ENST00000546485.5:ENST00000546591.6:ENST00000358888.7:ENST00000546654.1:ENST00000552314.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	39	2	2.06469	2.156785	2.24888	3.43729e-5	8.8998e-6	0.00165161	4.98043e-4
chr11	65500167	65500266	6416243	0	+	0.313131	[0,0.32]	chr11	577204	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2:ENST00000610481.1	lncRNA	lncRNA	lncRNA	lncRNA	4337	3292	2	2.12746	2.156635	2.18581	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	632133	632230	27	0	+	0.443299	(0.424,0.459]	chr1	3	12	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	23	24	2	1.77381	2.15653	2.53925	0.00114828	1.49857e-4	0.0316008	0.00577248
chr22	38501204	38501280	10036242	0	-	0.486842	(0.459,0.49]	chr22	1000453	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000467279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	32	2	2.06117	2.1557399999999998	2.25031	7.79692e-5	6.56652e-5	0.00333167	0.00289734
chr19	39840616	39840701	9495806	0	-	0.705882	(0.629,1]	chr19	935201	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	44	2	2.08948	2.155255	2.22103	7.94239e-5	2.64274e-5	0.00339189	0.00129873
chrX	53396544	53396617	10345447	0	-	0.452055	(0.424,0.459]	chrX	1027370	2	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	198	210	2	2.00743	2.1551799999999997	2.30293	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43282254	43282354	8938284	0	-	0.47	(0.459,0.49]	chr17	859071	521	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	30	41	2	1.79193	2.154595	2.51726	4.88889e-4	4.13597e-8	0.0160656	3.74186e-6
chr2	55564901	55564971	1452595	0	-	0.328571	(0.32,0.36]	chr2	150712	1	CDS	CDS:EXON_MRNA	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4	protein_coding	protein_coding	protein_coding	protein_coding	26	22	2	1.72769	2.154275	2.58086	0.00589712	1.33895e-5	0.108203	7.03558e-4
chr10	68341584	68341680	5871350	0	+	0.489583	(0.459,0.49]	chr10	526757	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	133	172	2	2.07699	2.154175	2.23136	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	153941868	153941949	769765	0	-	0.641975	(0.629,1]	chr1	84331	1	CDS	CDS:EXON_MRNA	DENND4B	ENSG00000198837.10	ENST00000361217.9:ENST00000368646.6:ENST00000483561.2:ENST00000472932.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	76	2	1.64037	2.153945	2.66752	7.32745e-6	2.82343e-9	4.21848e-4	3.1136e-7
chr16	16325933	16326010	8339279	0	+	0.623377	(0.57,0.629]	chr16	777010	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	19	34	2	2.07063	2.153595	2.23656	1.15101e-4	8.61983e-5	0.0046905	0.00367095
chr1	999782	999873	491058	0	-	0.802198	(0.629,1]	chr1	51982	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	37	2	2.07189	2.15353	2.23517	3.28531e-4	8.73733e-5	0.0112239	0.00371705
chr5	77693272	77693324	3506762	0	-	0.519231	(0.49,0.526]	chr5	321199	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000517679.5:ENST00000518218.5:ENST00000520361.5:ENST00000651106.1:ENST00000517881.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	34	2	1.72118	2.152735	2.58429	8.70447e-4	2.97461e-6	0.0250272	1.83617e-4
chr14	64025129	64025226	7651220	0	+	0.360825	(0.36,0.392]	chr14	704104	1	CDS	CDS:UTR3:EXON_MRNA	SYNE2	ENSG00000054654.20	ENST00000344113.8:ENST00000358025.7:ENST00000555002.6:ENST00000674144.1:ENST00000554584.5:ENST00000557005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	30	2	1.83483	2.15264	2.47045	2.65778e-4	8.50483e-6	0.00951223	4.78003e-4
chr22	24321958	24322054	9908395	0	+	0.46875	(0.459,0.49]	chr22	984259	8	CDS	CDS:EXON_MRNA:INTRON	SPECC1L	ENSG00000100014.20	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	42	2	2.07214	2.152215	2.23229	1.08785e-5	3.70161e-6	6.05704e-4	2.26538e-4
chr1	151248356	151248454	297673	0	+	0.357143	(0.32,0.36]	chr1	31827	6	UTR3	UTR3:EXON_MRNA	PIP5K1A	ENSG00000143398.20	ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000489625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	20	2	2.09906	2.1510100000000003	2.20296	8.30996e-4	6.18579e-4	0.0240064	0.0191937
chr6	165941565	165941665	4270167	0	-	0.5	(0.49,0.526]	chr6	386938	4	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	29	2	1.98132	2.14988	2.31844	7.63133e-4	4.6468e-5	0.0225706	0.00213752
chr11	130126699	130126764	6528363	0	+	0.430769	(0.424,0.459]	chr11	591855	1	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	12	2	1.82995	2.14954	2.46913	0.0125201	0.0100222	0.199546	0.164581
chr6	31627298	31627389	3754805	0	+	0.450549	(0.424,0.459]	chr6	341456	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8	protein_coding	protein_coding	protein_coding	protein_coding	13	15	2	2.08141	2.147755	2.2141	0.00829078	0.00244721	0.145308	0.0589166
chr18	224141	224200	9162869	0	-	0.372881	(0.36,0.392]	chr18	882952	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	THOC1	ENSG00000079134.13	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000583228.5:ENST00000631280.2:ENST00000584470.5:ENST00000579891.5:ENST00000577552.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	71	61	2	2.08165	2.146645	2.21164	1.44771e-8	9.97568e-9	1.43863e-6	1.01215e-6
chr20	34112176	34112243	9727613	0	-	0.61194	(0.57,0.629]	chr20	963026	2	UTR5	UTR5:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	12	22	2	1.88319	2.1452549999999997	2.40732	0.00386205	6.14369e-4	0.0816719	0.0190368
chr5	179699001	179699097	3406751	0	+	0.78125	(0.629,1]	chr5	312971	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	55	137	2	2.08794	2.14365	2.19936	2.98996e-11	1e-12	4.30294e-9	1.73382e-10
chr12	20641148	20641247	6844788	0	+	0.353535	(0.32,0.36]	chr12	625101	8	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	44	2	1.71681	2.1433	2.56979	6.06127e-5	7.77372e-9	0.00269139	8.05789e-7
chrX	154448483	154448560	10244344	0	+	0.506494	(0.49,0.526]	chrX	1020708	1	CDS	CDS:EXON_MRNA	FAM50A	ENSG00000071859.15	ENST00000393600.8:ENST00000464419.5:ENST00000481619.5:ENST00000158526.9:ENST00000478509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	122	176	2	2.0313	2.1427199999999997	2.25414	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	203797222	203797322	405942	0	+	0.42	(0.392,0.424]	chr1	43695	17	UTR5	UTR5:EXON_MRNA:INTRON	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000453771.5:ENST00000432282.5:ENST00000466470.5:ENST00000638800.1:ENST00000461980.1:ENST00000367214.5:ENST00000639812.1:ENST00000367212.7:ENST00000332127.8:ENST00000550078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	18	2	2.10221	2.142615	2.18302	0.00193741	0.00136698	0.0476787	0.0364621
chr13	54440790	54440877	7531682	0	-	0.517241	(0.49,0.526]	chr13	693002	2	EXON_PSEUDO	EXON_PSEUDO	RPL13AP25	ENSG00000136149.6	ENST00000484130.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	41	62	2	1.61279	2.14248	2.67217	1.64688e-4	4.41103e-12	0.006282	7.09001e-10
chrX	124061770	124061822	10218637	0	+	0.384615	(0.36,0.392]	chrX	1017640	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000693144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	17	2	2.05549	2.13988	2.22427	0.00205969	0.00188341	0.0505307	0.0481459
chr11	2972190	2972279	6538657	0	-	0.325843	(0.32,0.36]	chr11	593834	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	39	32	2	1.98499	2.13902	2.29305	3.1216e-4	1.41492e-6	0.0107039	9.56524e-5
chr9	95019753	95019849	5437904	0	+	0.427083	(0.424,0.459]	chr9	485314	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000496567.5:ENST00000463372.5:ENST00000482056.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	22	2	1.72286	2.13766	2.55246	0.0108763	1.97542e-5	0.177281	0.00100069
chr19	17276813	17276909	9302681	0	+	0.46875	(0.459,0.49]	chr19	900472	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BABAM1	ENSG00000105393.16	ENST00000594247.5:ENST00000447614.6:ENST00000359435.8:ENST00000598188.6:ENST00000601043.5:ENST00000595393.5:ENST00000595632.5:ENST00000598567.1:ENST00000598382.1:ENST00000601232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	26	2	2.05962	2.1368	2.21398	0.00189376	5.57054e-5	0.0483989	0.00254205
chr6	30716117	30716205	4034165	0	-	0.443182	(0.424,0.459]	chr6	365471	6	INTRON	INTRON	MDC1	ENSG00000137337.16	ENST00000376406.8:ENST00000416571.5:ENST00000425072.5:ENST00000422266.1	protein_coding	protein_coding	protein_coding	protein_coding	16	18	2	2.09956	2.13643	2.1733	0.00668885	5.39835e-4	0.116828	0.0171653
chr22	38294178	38294248	10035139	0	-	0.614286	(0.57,0.629]	chr22	1000247	2	CDS	CDS:UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000366216.6:ENST00000431632.5:ENST00000495232.5:ENST00000403904.5:ENST00000431611.5:ENST00000494610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	33	2	1.60022	2.13627	2.67232	0.00283843	3.91089e-6	0.0652083	2.38665e-4
chr3	15030274	15030363	1777490	0	+	0.483146	(0.459,0.49]	chr3	182734	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	30	2	1.6967	2.1336	2.5705	0.00162081	7.34613e-6	0.040872	4.24171e-4
chrX	132449202	132449302	10434758	0	-	0.39	(0.36,0.392]	chrX	1034956	85	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	13	12	2	2.07737	2.1332950000000004	2.18922	0.00949718	0.00764253	0.16275	0.130982
chr22	38871691	38871757	10039009	0	-	0.560606	(0.526,0.57]	chr22	1000893	1	CDS	CDS:EXON_MRNA	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	29	2	2.05701	2.13137	2.20573	0.00102853	4.2576e-5	0.0276703	0.00199812
chr14	21402046	21402136	7773962	0	-	0.411111	(0.392,0.424]	chr14	715179	2	CDS	CDS:EXON_MRNA	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000645206.1:ENST00000557364.6:ENST00000643469.1:ENST00000555935.2:ENST00000646340.1:ENST00000555962.6:ENST00000646558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	28	2	1.81482	2.1264450000000004	2.43807	3.76647e-4	4.10358e-5	0.0127234	0.00194446
chr7	23522288	23522388	4656320	0	-	0.28	[0,0.32]	chr7	418422	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRA2A	ENSG00000164548.12	ENST00000297071.9:ENST00000392502.8:ENST00000538367.6:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	42	31	2	1.71417	2.125205	2.53624	4.49361e-4	2.13396e-6	0.0150584	1.38918e-4
chr7	47342056	47342156	4713515	0	-	0.43	(0.424,0.459]	chr7	422609	367	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	19	21	2	1.93491	2.1241	2.31329	0.00245418	3.09701e-4	0.0590796	0.0109114
chr5	179618165	179618265	3679369	0	-	0.55	(0.526,0.57]	chr5	334937	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000502632.5:ENST00000519958.5:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000523921.1:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	158	227	2	1.90455	2.123955	2.34336	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	83980152	83980250	5645604	0	-	0.734694	(0.629,1]	chr9	505627	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	31	2	1.99212	2.1224049999999997	2.25269	7.79495e-4	5.18397e-4	0.0230228	0.0166428
chr11	93666707	93666807	6466192	0	+	0.37	(0.36,0.392]	chr11	584307	1	CDS_START	CDS_START:CDS:EXON_MRNA	CEP295	ENSG00000166004.15	ENST00000325212.11	protein_coding	protein_coding	protein_coding	protein_coding	85	71	2	1.73759	2.122315	2.50704	5.32268e-7	1e-12	3.92587e-5	1.73382e-10
chr9	137728406	137728464	5531172	0	+	0.431034	(0.424,0.459]	chr9	498218	2	CDS	CDS:UTR3:EXON_MRNA	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	33	2	1.97323	2.1222250000000003	2.27122	6.44844e-5	3.26593e-5	0.00284681	0.00159221
chr16	72096331	72096405	8430278	0	+	0.554054	(0.526,0.57]	chr16	790105	2	CDS	CDS:EXON_MRNA	DHX38	ENSG00000140829.12	ENST00000566794.5:ENST00000268482.8:ENST00000579387.5:ENST00000566489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	22	2	1.75998	2.12207	2.48416	0.00313293	5.96893e-4	0.0710868	0.01884
chr17	17188273	17188373	8663133	0	+	0.5	(0.49,0.526]	chr17	819260	35	UTR3	UTR3:EXON_MRNA:INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000395811.9:ENST00000578209.5:ENST00000581989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	52	2	1.85883	2.121795	2.38476	1.69231e-6	1.35877e-6	1.11022e-4	9.24076e-5
chr16	2759351	2759402	8304836	0	+	0.45098	(0.424,0.459]	chr16	773122	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000575870.5:ENST00000573451.5:ENST00000571372.1:ENST00000570655.1:ENST00000573498.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	164	171	2	2.07897	2.119755	2.16054	1e-12	1e-12	1.73382e-10	1.72912e-10
chr20	47249286	47249362	9753807	0	-	0.473684	(0.459,0.49]	chr20	966691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	34	2	1.97485	2.1194249999999997	2.264	1.65974e-4	1.51233e-5	0.00642161	8.01855e-4
chr5	115271460	115271543	3574861	0	-	0.325301	(0.32,0.36]	chr5	324684	4	CDS	CDS:EXON_MRNA	CCDC112	ENSG00000164221.13	ENST00000379611.10:ENST00000512261.5:ENST00000506442.5:ENST00000395557.4:ENST00000502975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	15	2	2.08487	2.1191649999999997	2.15346	0.00486375	0.0023994	0.0964485	0.0577748
chr1	179851017	179851103	813580	0	-	0.488372	(0.459,0.49]	chr1	90545	3	CDS	CDS:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	22	29	2	1.57931	2.118065	2.65682	0.00525749	2.45493e-6	0.100145	1.54892e-4
chr8	38786043	38786143	4972000	0	+	0.52	(0.49,0.526]	chr8	445770	1	SS5_PROX	SS5_PROX:INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	17	2	2.1024	2.1175249999999997	2.13265	0.00578443	0.002923	0.106345	0.0671417
chr10	50090830	50090886	5847211	0	+	0.410714	(0.392,0.424]	chr10	525834	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000492914.1:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	21	2	1.45519	2.11623	2.77727	0.00819694	9.56563e-5	0.143868	0.00399919
chr12	120465706	120465787	7300491	0	-	0.45679	(0.424,0.459]	chr12	673834	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	25	2	1.82005	2.11618	2.41231	0.00219037	3.8647e-5	0.0548598	0.00182159
chr7	55152545	55152604	4391220	0	+	0.627119	(0.57,0.629]	chr7	395465	1	CDS	CDS:EXON_MRNA	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6	protein_coding	protein_coding	protein_coding	protein_coding	15	27	2	2.10566	2.1155749999999998	2.12549	0.00394176	8.79322e-5	0.0799102	0.00373811
chr2	74370016	74370069	1496423	0	-	0.566038	(0.526,0.57]	chr2	154641	2	CDS	CDS:EXON_MRNA	DCTN1	ENSG00000204843.13	ENST00000394003.7:ENST00000361874.8:ENST00000680606.1:ENST00000628224.3:ENST00000434055.5:ENST00000409240.5:ENST00000409438.5:ENST00000633691.1:ENST00000409868.5:ENST00000466110.5:ENST00000409567.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	26	2	2.0136	2.1152249999999997	2.21685	0.00171045	1.27315e-4	0.0444376	0.00505021
chr12	132035506	132035604	7057924	0	+	0.571429	(0.57,0.629]	chr12	647307	30	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000611841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	38	2	1.62076	2.114815	2.60887	0.00353495	1.72849e-7	0.0774451	1.40174e-5
chrX	71424031	71424066	10156881	0	+	0.371429	(0.36,0.392]	chrX	1012558	1	CDS	CDS:UTR3:EXON_MRNA	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5:ENST00000468167.6:ENST00000683954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	36	2	1.86258	2.113525	2.36447	5.87066e-5	2.37199e-6	0.00262682	1.53676e-4
chr16	16324654	16324747	8339264	0	+	0.634409	(0.629,1]	chr16	777002	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000183889	ENSG00000183889.12	ENST00000536260.5:ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	7	19	2	1.9665	2.109895	2.25329	0.00835666	0.00559835	0.14021	0.104204
chr6	165894240	165894340	4269690	0	-	0.43	(0.424,0.459]	chr6	386915	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000672224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	116	118	2	1.86154	2.10605	2.35056	7.67819e-12	1e-12	1.19881e-9	1.73382e-10
chr17	43265156	43265256	8938113	0	-	0.54	(0.526,0.57]	chr17	859071	350	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	22	28	2	1.43306	2.104575	2.77609	0.00427796	3.86368e-5	0.0865189	0.00182139
chr6	56471186	56471268	4090489	0	-	0.378049	(0.36,0.392]	chr6	372618	2	CDS	CDS:EXON_MRNA	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651941.1:ENST00000651790.1:ENST00000651289.1:ENST00000651457.1:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	14	2	2.01592	2.10257	2.18922	0.00764253	0.0036948	0.130982	0.0772745
chr1	225862770	225862851	870107	0	-	0.54321	(0.526,0.57]	chr1	96881	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000474478.5:ENST00000537914.5:ENST00000483779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	61	84	2	1.92637	2.097125	2.26788	5.22838e-9	5.94472e-10	5.55862e-7	7.22535e-8
chr2	27599969	27600053	961860	0	+	0.547619	(0.526,0.57]	chr2	105340	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	18	2	1.93418	2.09671	2.25924	0.00617094	0.00248547	0.114097	0.0597943
chr14	39181375	39181472	7607636	0	+	0.43299	(0.424,0.459]	chr14	699950	10	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	282	288	2	2.07783	2.0954550000000003	2.11308	1e-12	1e-12	1.73382e-10	1.72912e-10
chr14	55634525	55634591	7628441	0	+	0.439394	(0.424,0.459]	chr14	701934	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000554567.1:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	110	113	2	2.05628	2.094805	2.13333	3.00826e-12	1e-12	4.93734e-10	1.72912e-10
chr14	92005763	92005861	7901163	0	-	0.387755	(0.36,0.392]	chr14	727946	25	CDS	CDS:EXON_MRNA	TRIP11	ENSG00000100815.12	ENST00000267622.8:ENST00000554357.5	protein_coding	protein_coding	protein_coding	protein_coding	20	17	2	1.9799	2.094495	2.20909	0.00394918	0.00146476	0.0816719	0.0384801
chrX	77633295	77633384	10383598	0	-	0.460674	(0.459,0.49]	chrX	1030452	2	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000675908.1:ENST00000400866.4:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	124	155	2	1.98403	2.09328	2.20253	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	212618180	212618234	426262	0	+	0.518519	(0.49,0.526]	chr1	45932	2	CDS	CDS:EXON_MRNA:INTRON	ATF3	ENSG00000162772.17	ENST00000366987.6:ENST00000366981.8:ENST00000613954.4:ENST00000465155.5:ENST00000341491.9:ENST00000366985.5:ENST00000492118.2:ENST00000464547.5:ENST00000366983.5:ENST00000336937.8:ENST00000613104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	39	2	1.41428	2.09304	2.7718	0.00265322	1.14171e-7	0.0631592	9.55593e-6
chr12	20642926	20643025	6844806	0	+	0.363636	(0.36,0.392]	chr12	625101	26	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	19	2	1.66353	2.09228	2.52103	0.0110506	1.00346e-4	0.179068	0.00414988
chr16	85688808	85688898	8613863	0	-	0.544444	(0.526,0.57]	chr16	812465	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GINS2	ENSG00000131153.9	ENST00000253462.8:ENST00000596233.1	protein_coding	protein_coding	protein_coding	protein_coding	16	24	2	2.0136	2.0919049999999997	2.17021	0.00171045	4.13969e-4	0.0444376	0.013778200000000001
chr20	49223350	49223433	9668948	0	+	0.481928	(0.459,0.49]	chr20	955527	2	CDS	CDS:EXON_MRNA	DDX27	ENSG00000124228.15	ENST00000484427.5:ENST00000618172.5:ENST00000462328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	147	181	2	1.93391	2.0907400000000003	2.24757	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	30012284	30012368	9322411	0	+	0.428571	(0.424,0.459]	chr19	903533	1	CDS	CDS:UTR3:EXON_MRNA	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000392271.6:ENST00000574110.5:ENST00000575242.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	33	2	1.8635	2.0891699999999997	2.31484	5.52964e-4	2.82102e-6	0.0175448	1.75466e-4
chr1	109223977	109224048	251287	0	+	0.43662	(0.424,0.459]	chr1	25525	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	271	276	2	1.93603	2.088615	2.2412	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	154439005	154439072	10244238	0	+	0.537313	(0.526,0.57]	chrX	1020659	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GDI1	ENSG00000203879.12	ENST00000630693.2:ENST00000447750.7:ENST00000445564.5:ENST00000475976.5:ENST00000434049.1:ENST00000415109.5:ENST00000481304.5:ENST00000485143.5:ENST00000491154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	28	2	1.97813	2.08852	2.19891	5.85662e-4	1.95736e-4	0.0185585	0.00742406
chr15	50481577	50481675	7975826	0	+	0.397959	(0.392,0.424]	chr15	737776	2	CDS	CDS:UTR3:EXON_MRNA	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9:ENST00000559329.5:ENST00000560730.5:ENST00000625664.2:ENST00000561330.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	40	37	2	1.64167	2.0863050000000003	2.53094	6.53134e-4	1.20683e-7	0.0197042	1.01981e-5
chr7	117138434	117138532	4524864	0	+	0.479592	(0.459,0.49]	chr7	407376	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	21	2	2.05962	2.0833399999999997	2.10706	0.00189376	0.00108802	0.0483989	0.0291682
chrX	318604	318687	10248940	0	-	0.819277	(0.629,1]	chrX	1021313	3	CDS	CDS:EXON_MRNA	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	17	43	2	1.90553	2.081315	2.2571	0.00128938	2.98649e-6	0.0340399	1.8428e-4
chr10	103350792	103350879	6244603	0	-	0.655172	(0.629,1]	chr10	559081	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	28	2	2.00597	2.080785	2.1556	0.0015276	0.00107785	0.039835	0.0289083
chr6	89655763	89655831	4127977	0	-	0.5	(0.49,0.526]	chr6	376144	1	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	39	54	2	2.01783	2.080575	2.14332	4.21374e-6	2.56137e-7	2.51071e-4	1.9928e-5
chrM	742	837	10480389	0	+	0.494737	(0.49,0.526]	chrM	1038986	2	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	407	556	2	2.02869	2.0801499999999997	2.13161	1e-12	1e-12	1.73382e-10	1.72912e-10
chr13	21377429	21377520	7462492	0	-	0.648352	(0.629,1]	chr13	687460	4	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000626464.2:ENST00000464055.5:ENST00000320220.13:ENST00000477811.5:ENST00000494731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	54	2	1.93009	2.07977	2.22945	6.08471e-5	1.6053e-6	0.0027377	1.05702e-4
chr2	148645093	148645170	1169171	0	+	0.623377	(0.57,0.629]	chr2	123925	2	CDS_START	CDS_START:CDS:EXON_MRNA	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5	protein_coding	protein_coding	protein_coding	protein_coding	29	50	2	1.92037	2.07971	2.23905	1.28977e-4	1.16649e-7	0.00518727	9.75243e-6
chr19	13774477	13774574	9294661	0	+	0.597938	(0.57,0.629]	chr19	898811	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	C19orf53	ENSG00000104979.9	ENST00000588234.6:ENST00000221576.4:ENST00000588858.5:ENST00000588841.1:ENST00000592760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	43	2	1.46842	2.0787649999999998	2.68911	9.08242e-4	4.77481e-7	0.025628	3.57143e-5
chrX	154450432	154450506	10244376	0	+	0.72973	(0.629,1]	chrX	1020736	1	UTR3	UTR3:EXON_MRNA	FAM50A	ENSG00000071859.15	ENST00000393600.8:ENST00000464419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	26	2	1.90268	2.077685	2.25269	0.00619111	5.18397e-4	0.114391	0.0166428
chr12	48939996	48940051	7159163	0	-	0.563636	(0.526,0.57]	chr12	657955	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ARF3	ENSG00000134287.10	ENST00000256682.9:ENST00000485410.5:ENST00000447318.6:ENST00000541959.5:ENST00000541236.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	22	2	1.72322	2.07736	2.4315	0.00691218	2.56224e-4	0.12284	0.00911512
chr11	11948032	11948120	6320423	0	+	0.431818	(0.424,0.459]	chr11	567438	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2:ENST00000531513.5:ENST00000530041.5:ENST00000530369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	23	2	1.71628	2.07655	2.43682	0.00357776	1.00489e-4	0.0781877	0.00417314
chr9	137040813	137040898	5769178	0	-	0.729412	(0.629,1]	chr9	519110	1	CDS	CDS:EXON_MRNA	NPDC1	ENSG00000107281.10	ENST00000371601.5:ENST00000371600.7:ENST00000488145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	21	2	2.0506	2.0749950000000004	2.09939	0.00602676	0.00408309	0.111617	0.0825355
chr6	20781144	20781204	3728258	0	+	0.55	(0.526,0.57]	chr6	338620	1	CDS	CDS:EXON_MRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	20	29	2	1.92994	2.073395	2.21685	6.43613e-4	1.27315e-4	0.0196983	0.00505021
chr1	225519308	225519394	868511	0	-	0.662791	(0.629,1]	chr1	96754	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ENAH	ENSG00000154380.19	ENST00000696609.1:ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000497899.6:ENST00000391874.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	86	204	2	1.92923	2.072985	2.21674	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	66078430	66078530	3197062	0	+	0.34	(0.32,0.36]	chr5	294875	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000503913.5:ENST00000509946.1:ENST00000506744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	20	2	2.00724	2.071885	2.13653	0.00350677	2.58185e-4	0.0747608	0.00914105
chr1	225924043	225924110	870630	0	-	0.716418	(0.629,1]	chr1	96992	1	CDS_START	CDS_START:CDS:EXON_MRNA	PYCR2	ENSG00000143811.20	ENST00000612039.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	32	2	2.04203	2.07071	2.09939	0.00408309	1.02629e-4	0.0825355	0.00425742
chr7	27785162	27785236	4335062	0	+	0.351351	(0.32,0.36]	chr7	392013	1	CDS	CDS:UTR3:EXON_MRNA	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	16	2	1.96478	2.069535	2.17429	0.00733213	0.00112	0.127459	0.030846
chr19	15380374	15380430	9449404	0	-	0.642857	(0.629,1]	chr19	928465	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	33	2	2.0245	2.068575	2.11265	0.00301834	9.09494e-5	0.0692526	0.00384664
chr11	118473725	118473823	6508162	0	+	0.510204	(0.49,0.526]	chr11	588896	22	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KMT2A	ENSG00000118058.24	ENST00000389506.10:ENST00000534358.8:ENST00000533790.3:ENST00000527869.7:ENST00000649690.2:ENST00000691053.1:ENST00000531904.6:ENST00000649699.1	protein_coding	protein_coding	protein_coding	protein_coding	23	33	2	1.95821	2.067015	2.17582	5.45212e-4	2.22392e-5	0.0173329	0.00111016
chr1	32817244	32817342	563216	0	-	0.734694	(0.629,1]	chr1	63272	1	UTR5	UTR5:EXON_MRNA	YARS1	ENSG00000134684.13	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.2:ENST00000481895.6:ENST00000616261.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	79	2	1.97325	2.066195	2.15914	9.1365e-7	1.92301e-8	6.48883e-5	1.88373e-6
chr1	20969534	20969596	535671	0	-	0.435484	(0.424,0.459]	chr1	59010	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	37	2	1.97541	2.065715	2.15602	2.32441e-5	2.04387e-5	0.00117846	0.00103061
chr17	63818125	63818211	8776666	0	+	0.651163	(0.629,1]	chr17	835211	6	CDS	CDS:EXON_MRNA:INTRON	DDX42	ENSG00000198231.14	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000584010.5:ENST00000578593.1:ENST00000582985.1:ENST00000581767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	60	2	2.0393	2.065335	2.09137	8.11584e-6	2.05983e-6	4.58213e-4	1.34285e-4
chr12	103932278	103932333	7001136	0	+	0.345455	(0.32,0.36]	chr12	639883	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	65	49	2	1.95833	2.063535	2.16874	8.89631e-7	2.74938e-7	6.26008e-5	2.15144e-5
chr1	186341093	186341159	824308	0	-	0.409091	(0.392,0.424]	chr1	91575	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000481347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	124	111	2	1.86951	2.0630100000000002	2.25651	8.96981e-11	1e-12	1.21635e-8	1.73382e-10
chr1	45608152	45608244	136825	0	+	0.543478	(0.526,0.57]	chr1	16788	10	CDS	CDS:UTR3:EXON_MRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	28	2	1.48501	2.06238	2.63975	0.00812041	1.02725e-5	0.142556	5.72498e-4
chr6	165810283	165810383	4268847	0	-	0.46	(0.459,0.49]	chr6	386899	176	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	40	2	1.9596	2.061	2.1624	8.71581e-5	3.09457e-6	0.00370627	1.90693e-4
chr6	130052758	130052858	3882540	0	+	0.3	[0,0.32]	chr6	354840	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	L3MBTL3	ENSG00000198945.8	ENST00000361794.7:ENST00000533560.5:ENST00000528385.5:ENST00000368139.6:ENST00000526019.5:ENST00000368136.3	protein_coding	protein_coding	protein_coding	protein_coding	28	21	2	1.91109	2.059795	2.2085	0.00295286	1.53416e-4	0.0676474	0.00596515
chr7	111343380	111343480	4817136	0	-	0.45	(0.424,0.459]	chr7	431926	3795	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	25	2	1.6443	2.0595	2.4747	0.00928623	8.18672e-6	0.161124	4.6204e-4
chr9	88426460	88426539	5420208	0	+	0.392405	(0.392,0.424]	chr9	483990	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	23	2	1.91651	2.05848	2.20045	8.73932e-4	4.03557e-4	0.0251226	0.0138446
chr14	55651889	55651927	7628641	0	+	0.368421	(0.36,0.392]	chr14	702028	1	CDS	CDS:UTR3:EXON_MRNA	KTN1	ENSG00000126777.18	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5:ENST00000554507.5:ENST00000554890.1:ENST00000555164.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	21	2	2.02869	2.05838	2.08807	9.63961e-4	7.7628e-4	0.0271194	0.0226983
chr15	84646265	84646347	8264817	0	-	0.512195	(0.49,0.526]	chr15	767473	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WDR73	ENSG00000177082.13	ENST00000434634.7:ENST00000398528.7:ENST00000559994.5:ENST00000559015.5:ENST00000559126.5:ENST00000558608.1:ENST00000560966.5:ENST00000558521.5:ENST00000559224.5:ENST00000559452.5:ENST00000561329.5:ENST00000559178.5:ENST00000560835.5:ENST00000560088.5:ENST00000561447.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	32	2	1.53171	2.058	2.58429	0.00395415	2.97461e-6	0.0817225	1.83617e-4
chr18	22997619	22997676	9078353	0	+	0.45614	(0.424,0.459]	chr18	877113	1	CDS	CDS:EXON_MRNA	RBBP8	ENSG00000101773.19	ENST00000327155.10:ENST00000399722.6:ENST00000399725.6:ENST00000360790.9:ENST00000583057.1	protein_coding	protein_coding	protein_coding	protein_coding	12	13	2	1.90168	2.05789	2.2141	0.0110992	0.00829078	0.181121	0.145308
chr12	55966938	55967008	6919689	0	+	0.742857	(0.629,1]	chr12	631907	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000555357.1:ENST00000554619.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	45	105	2	1.81432	2.0578399999999997	2.30136	5.58616e-8	4.95793e-11	4.90736e-6	6.96439e-9
chr16	48339078	48339177	8379308	0	+	0.393939	(0.392,0.424]	chr16	783137	22	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5:ENST00000565867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	24	2	1.7959	2.0549	2.3139	0.00838375	1.21748e-5	0.140625	6.43198e-4
chr1	228401117	228401194	878142	0	-	0.61039	(0.57,0.629]	chr1	97731	3	CDS	CDS:EXON_MRNA:INTRON	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5:ENST00000366699.3:ENST00000602308.1	protein_coding	protein_coding	protein_coding	protein_coding	26	42	2	1.39341	2.054025	2.71464	0.00376784	7.20431e-8	0.0787458	6.30229e-6
chr12	119782577	119782637	7297459	0	-	0.516667	(0.49,0.526]	chr12	673170	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000536325.1:ENST00000677927.1:ENST00000676563.1:ENST00000678686.1:ENST00000488203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	23	2	1.75125	2.05324	2.35523	0.0061586	1.93935e-4	0.114	0.00722572
chr7	105506188	105506273	4801092	0	-	0.435294	(0.424,0.459]	chr7	431199	1	CDS	CDS:EXON_MRNA	PUS7	ENSG00000091127.14	ENST00000481939.5:ENST00000469408.6:ENST00000356362.6:ENST00000482157.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	22	2	1.91059	2.05193	2.19327	0.00243855	3.28502e-4	0.0587626	0.0112239
chr5	31528080	31528171	3430196	0	-	0.571429	(0.57,0.629]	chr5	315492	1	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000507438.5:ENST00000504361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	24	2	2.00569	2.051845	2.098	0.00170941	0.00107583	0.0429464	0.0299939
chr7	148884242	148884321	4883691	0	-	0.632911	(0.629,1]	chr7	437031	2	UTR5	UTR5:EXON_MRNA	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	23	2	1.9665	2.051665	2.13683	0.00835666	0.00144272	0.14021	0.0382827
chr9	130872859	130872948	5516661	0	+	0.595506	(0.57,0.629]	chr9	495081	1	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	13	21	2	1.55068	2.05034	2.55	0.0112891	6.95774e-4	0.181488	0.0211658
chr2	96303244	96303330	1513635	0	-	0.511628	(0.49,0.526]	chr2	157373	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	55	75	2	1.9933	2.04981	2.10632	2.55348e-8	7.46385e-9	2.41437e-6	7.74769e-7
chr14	21428157	21428254	7774245	0	-	0.546392	(0.526,0.57]	chr14	715247	4	CDS	CDS:EXON_MRNA:INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000557364.6:ENST00000643469.1:ENST00000646340.1:ENST00000555962.6:ENST00000645140.1:ENST00000642518.1:ENST00000643048.1:ENST00000553651.2:ENST00000646063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	35	2	1.51802	2.045565	2.57311	0.00569254	3.14538e-7	0.105396	2.41102e-5
chr16	28825769	28825841	8363655	0	+	0.430556	(0.424,0.459]	chr16	779916	1	CDS	CDS:EXON_MRNA	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000562867.5:ENST00000568266.5:ENST00000564656.5:ENST00000561539.1:ENST00000566080.1:ENST00000565971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	23	2	1.80718	2.04509	2.283	0.00385406	1.08545e-4	0.0816719	0.00442392
chr1	15643567	15643650	54531	0	+	0.53012	(0.526,0.57]	chr1	5086	1	CDS	CDS:UTR3:EXON_MRNA	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000320153.10:ENST00000483899.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	34	2	1.69456	2.0445900000000004	2.39462	6.40452e-4	1.91444e-5	0.0196462	9.71448e-4
chr2	25246234	25246309	1399756	0	-	0.533333	(0.526,0.57]	chr2	145329	2	CDS	CDS:UTR3:EXON_MRNA	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380746.8:ENST00000380756.7:ENST00000683760.1:ENST00000683393.1:ENST00000402667.1:ENST00000474807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	93	2	1.9141	2.0434900000000003	2.17288	3.29867e-8	2.68952e-12	3.06962e-6	4.45836e-10
chr1	155051386	155051465	305663	0	+	0.708861	(0.629,1]	chr1	33156	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ADAM15	ENSG00000143537.14	ENST00000473905.6:ENST00000533732.5:ENST00000480331.5:ENST00000527418.5:ENST00000355956.6:ENST00000359280.8:ENST00000360674.8:ENST00000368412.7:ENST00000449910.6:ENST00000526491.5:ENST00000529473.5:ENST00000531703.5:ENST00000477533.5:ENST00000271836.10:ENST00000461564.6:ENST00000356955.7:ENST00000368413.5:ENST00000485346.6:ENST00000487956.6:ENST00000531455.5:ENST00000531831.5:ENST00000447332.3:ENST00000472434.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	46	2	1.64324	2.04318	2.44312	4.24502e-4	8.77901e-6	0.0140677	4.90449e-4
chr12	7118677	7118777	6815048	0	+	0.56	(0.526,0.57]	chr12	622818	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C1RL-AS1	ENSG00000205885.8	ENST00000541775.5:ENST00000535078.2:ENST00000382215.3	lncRNA	lncRNA	lncRNA	lncRNA	11	16	2	1.82695	2.043095	2.25924	0.00795663	0.00617094	0.13377	0.114097
chr4	70689921	70690017	2641642	0	+	0.40625	(0.392,0.424]	chr4	252588	13	CDS	CDS:EXON_MRNA	UTP3	ENSG00000132467.4	ENST00000254803.4	protein_coding	protein_coding	protein_coding	protein_coding	31	27	2	1.64549	2.04178	2.43807	0.00133466	4.10358e-5	0.0352166	0.00194446
chrX	74217588	74217685	10376533	0	-	0.412371	(0.392,0.424]	chrX	1030048	17	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2	lncRNA	lncRNA	lncRNA	lncRNA	38	34	2	1.85471	2.041765	2.22882	1.27482e-4	1.13481e-5	0.00505617	6.05386e-4
chrM	14846	14940	10480518	0	+	0.553191	(0.526,0.57]	chrM	1039012	1	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	79	108	2	1.80439	2.041615	2.27884	3.44048e-9	1e-12	3.76241e-7	1.72912e-10
chr16	31190090	31190141	8372566	0	+	0.627451	(0.57,0.629]	chr16	782216	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	43	70	2	1.89149	2.040765	2.19004	1.72459e-6	5.44416e-9	1.1291e-4	5.77979e-7
chr11	45945839	45945921	6597213	0	-	0.536585	(0.526,0.57]	chr11	600195	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000692878.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000532028.1:ENST00000689695.1:ENST00000527753.5:ENST00000534766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	73	2	2.00934	2.04039	2.07144	8.62701e-8	7.22548e-9	7.43658e-6	7.50003e-7
chr22	20106226	20106277	9897021	0	+	0.509804	(0.49,0.526]	chr22	982427	2	CDS	CDS:EXON_MRNA	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000495826.5:ENST00000407755.1:ENST00000498171.5:ENST00000491892.1:ENST00000495351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	37	2	1.53171	2.03948	2.54725	0.00395415	1.87861e-7	0.0817225	1.51508e-5
chr1	228366807	228366889	450435	0	+	0.548781	(0.526,0.57]	chr1	48777	1	CDS	CDS:EXON_MRNA	OBSCN	ENSG00000154358.23	ENST00000570156.7:ENST00000680850.1:ENST00000422127.5:ENST00000636476.2:ENST00000662438.1	protein_coding	protein_coding	protein_coding	protein_coding	10	15	2	1.98407	2.0383750000000003	2.09268	0.0117294	0.00599097	0.188071	0.10983
chr17	17175292	17175352	8662991	0	+	0.633333	(0.629,1]	chr17	819223	1	CDS	CDS:EXON_MRNA:INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000395811.9:ENST00000341712.8:ENST00000584067.5:ENST00000579832.1:ENST00000313485.10:ENST00000414263.5:ENST00000429184.7:ENST00000581855.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	30	2	1.74272	2.037995	2.33327	0.00155685	9.22282e-4	0.0405815	0.0263676
chr13	45975652	45975745	7515418	0	-	0.55914	(0.526,0.57]	chr13	691139	5	CDS	CDS:EXON_MRNA	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	67	92	2	1.99513	2.0370049999999997	2.07888	8.45071e-9	2.72784e-11	8.70469e-7	3.97017e-9
chr10	45750150	45750206	5843412	0	+	0.410714	(0.392,0.424]	chr10	525273	2	CDS	CDS:EXON_MRNA	WASHC2C	ENSG00000172661.20	ENST00000359860.7:ENST00000374362.6:ENST00000540872.6:ENST00000537517.6:ENST00000623400.4:ENST00000420848.3	protein_coding	protein_coding	protein_coding	protein_coding	18	16	2	1.79875	2.03613	2.27351	0.00505154	0.00368786	0.0979824	0.0804935
chr15	34437397	34437479	8126442	0	-	0.878049	(0.629,1]	chr15	751847	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	591	1336	2	1.92897	2.0353000000000003	2.14163	1e-12	1e-12	1.73382e-10	1.72912e-10
chr21	45192577	45192676	9829515	0	+	0.565657	(0.526,0.57]	chr21	975129	71	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	26	2	1.70716	2.0262450000000003	2.34533	0.00245686	2.0549e-4	0.0590256	0.0075955
chr12	67299022	67299095	6944450	0	+	0.342466	(0.32,0.36]	chr12	635594	2	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	35	2	1.83172	2.024665	2.21761	6.62249e-4	4.30495e-7	0.0199616	3.2201e-5
chr6	31971938	31972026	4036925	0	-	0.545455	(0.526,0.57]	chr6	366662	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	DXO	ENSG00000204348.10	ENST00000477826.5:ENST00000485557.5:ENST00000375349.7:ENST00000337523.10:ENST00000473976.1:ENST00000478221.5:ENST00000375356.7:ENST00000480240.5:ENST00000474587.1:ENST00000492946.1:ENST00000487914.1:ENST00000460058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	30	2	1.83984	2.02326	2.20668	0.00211888	3.09189e-5	0.0532704	0.00151504
chr17	45149485	45149583	8724932	0	+	0.693878	(0.629,1]	chr17	828827	3	CDS	CDS:EXON_MRNA	HEXIM1	ENSG00000186834.4	ENST00000332499.4	protein_coding	protein_coding	protein_coding	protein_coding	16	36	2	1.70111	2.0223899999999997	2.34367	7.83811e-4	2.45902e-4	0.0231375	0.0089494
chr15	34382881	34382967	8125873	0	-	0.569767	(0.526,0.57]	chr15	751748	2	CDS	CDS:EXON_MRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000432566.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	90	121	2	1.93989	2.021425	2.10296	1.51051e-11	1e-12	2.2724e-9	1.73382e-10
chr15	34529102	34529188	8126512	0	-	0.569767	(0.526,0.57]	chr15	751867	2	CDS	CDS:EXON_MRNA	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000438958.2:ENST00000484716.5:ENST00000568555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	87	116	2	1.74935	2.021065	2.29278	1.48246e-9	1e-12	1.7203e-7	1.73382e-10
chr12	53482564	53482653	7169243	0	-	0.685393	(0.629,1]	chr12	660191	1	CDS	CDS:UTR3:EXON_MRNA	MAP3K12	ENSG00000139625.13	ENST00000267079.6:ENST00000547488.6:ENST00000547020.1:ENST00000547035.5:ENST00000551511.5:ENST00000552365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	27	2	1.70364	2.02094	2.33824	0.008907	3.13384e-4	0.146898	0.0110139
chr9	128689311	128689401	5504046	0	+	0.866667	(0.629,1]	chr9	492922	2	UTR5	UTR5:EXON_MRNA:INTRON	SET	ENSG00000119335.18	ENST00000686840.1:ENST00000372692.8:ENST00000691158.1:ENST00000686568.1:ENST00000409104.7:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	27	2	1.9911	2.0208500000000003	2.0506	0.00602676	6.5553e-4	0.111617	0.0197724
chr11	18526816	18526883	6581893	0	-	0.761194	(0.629,1]	chr11	598619	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000544804.5:ENST00000438874.6:ENST00000542488.5:ENST00000535077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	26	2	1.46883	2.020205	2.57158	0.0100511	7.34532e-4	0.170122	0.0220209
chr6	56624515	56624571	4092112	0	-	0.410714	(0.392,0.424]	chr6	372964	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000652573.1:ENST00000439203.5:ENST00000370765.11:ENST00000522360.5:ENST00000518935.5	protein_coding	protein_coding	protein_coding	protein_coding	29	26	2	1.91651	2.019965	2.12342	8.73932e-4	1.08601e-4	0.0251226	0.00442392
chr2	182393984	182394084	1636161	0	-	0.42	(0.392,0.424]	chr2	168577	1292	INTRON	INTRON	PDE1A	ENSG00000115252.19	ENST00000462938.6:ENST00000435564.6:ENST00000409365.6:ENST00000482782.6:ENST00000410103.2:ENST00000351439.10:ENST00000495511.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	82	72	2	1.9295	2.01979	2.11008	1.27203e-7	1.56037e-10	1.06457e-5	2.0472e-8
chr17	45519419	45519518	8947017	0	-	0.494949	(0.49,0.526]	chr17	860733	9	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1:ENST00000661058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	18	25	2	1.9108	2.016405	2.12201	0.0017585	4.24727e-4	0.0441368	0.0142828
chr22	36294229	36294298	10029391	0	-	0.594203	(0.57,0.629]	chr22	999048	3	CDS	CDS:EXON_MRNA	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000691109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	54	2	1.80354	2.01433	2.22512	1.87339e-5	5.72105e-7	9.51424e-4	4.19451e-5
chr5	34938857	34938933	3145910	0	+	0.513158	(0.49,0.526]	chr5	290554	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000644357.1:ENST00000642285.1:ENST00000646714.1:ENST00000514237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	61	81	2	1.80537	2.01343	2.22149	2.0994e-7	1.15932e-10	1.69669e-5	1.53269e-8
chrM	9010	9107	10480467	0	+	0.453608	(0.424,0.459]	chrM	1038999	5	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	94	91	2	1.99465	2.0130850000000002	2.03152	5.69841e-10	2.95901e-11	6.94184e-8	4.2603e-9
chr11	67121316	67121358	6423210	0	+	0.452381	(0.424,0.459]	chr11	578967	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	34	2	1.81539	2.0128150000000002	2.21024	4.08353e-4	7.0151e-6	0.0138446	4.04725e-4
chr1	200649149	200649226	832906	0	-	0.415584	(0.392,0.424]	chr1	92344	2	CDS	CDS:EXON_MRNA	DDX59	ENSG00000118197.14	ENST00000447706.6:ENST00000413408.5:ENST00000331314.11:ENST00000429498.5:ENST00000433235.1	protein_coding	protein_coding	protein_coding	protein_coding	27	25	2	1.7959	2.01236	2.22882	0.00838375	1.13481e-5	0.140625	6.05386e-4
chr17	45518344	45518441	8947006	0	-	0.340206	(0.32,0.36]	chr17	860732	2	SS3_PROX	SS3_PROX:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	54	40	2	1.89048	2.01212	2.13376	7.73705e-5	5.04182e-7	0.00330656	3.74084e-5
chr3	42632674	42632748	1849730	0	+	0.391892	(0.392,0.424]	chr3	187228	2	CDS	CDS:UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000429888.5:ENST00000232978.13:ENST00000465584.5:ENST00000498730.5:ENST00000472127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	106	89	2	1.81082	2.0116050000000003	2.21239	5.3703e-10	3.66509e-11	6.56574e-8	5.25983e-9
chr4	89828142	89828184	2957864	0	-	0.571429	(0.57,0.629]	chr4	277934	1	CDS	CDS:EXON_MRNA:INTRON	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1:ENST00000502987.5:ENST00000506691.1	protein_coding	protein_coding	protein_coding	protein_coding	86	135	2	1.90104	2.01002	2.119	7.53581e-11	1e-12	1.02804e-8	1.72912e-10
chr14	57275372	57275469	7632745	0	+	0.525773	(0.49,0.526]	chr14	702317	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AP5M1	ENSG00000053770.12	ENST00000554931.1:ENST00000261558.8:ENST00000555448.5:ENST00000431972.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	30	2	1.4615	2.00977	2.55804	0.00366161	2.6542e-5	0.0766409	0.00131199
chr20	58676086	58676186	9682595	0	+	0.46	(0.459,0.49]	chr20	956437	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STX16	ENSG00000124222.22	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000476384.5:ENST00000483434.5:ENST00000490700.5:ENST00000371132.8:ENST00000467096.5:ENST00000358029.8:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	28	2	1.9066	2.00942	2.11224	6.27629e-4	2.14567e-4	0.0193151	0.00797476
chr1	26472439	26472525	82865	0	+	0.55814	(0.526,0.57]	chr1	8682	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000468388.5:ENST00000479815.5:ENST00000460563.5:ENST00000464888.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	38	2	1.444	2.008555	2.57311	0.00334308	3.14538e-7	0.0734189	2.41102e-5
chr1	109213992	109214092	251184	0	+	0.58	(0.57,0.629]	chr1	25516	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000482384.1:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	150	233	2	1.96167	2.008085	2.0545	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	52712545	52712632	2619133	0	+	0.770115	(0.629,1]	chr4	251030	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR	ENSG00000226950.8	ENST00000411630.7:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2	lncRNA	lncRNA	lncRNA	lncRNA	15	32	2	1.38536	2.0054049999999997	2.62545	0.00862316	8.89172e-5	0.15074100000000001	0.00377837
chr22	39315212	39315307	10039612	0	-	0.547368	(0.526,0.57]	chr22	1001008	1	EXON_SMALL	EXON_SMALL:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL3:SNORD83A	ENSG00000100316.16:ENSG00000209482.1	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000481985.5:ENST00000471290.1:ENST00000453303.5:ENST00000386747.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:processed_transcript	11	16	2	1.98407	2.00519	2.02631	0.0117294	0.00448098	0.188071	0.0875511
chr1	109075920	109075947	720778	0	-	0.555556	(0.526,0.57]	chr1	77015	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TAF13	ENSG00000197780.11	ENST00000461096.7:ENST00000338366.6:ENST00000692048.1	protein_coding	protein_coding	protein_coding	protein_coding	18	25	2	1.95313	2.00507	2.05701	0.00102853	8.91413e-4	0.0276703	0.0251819
chr19	19528603	19528685	9311781	0	+	0.609756	(0.57,0.629]	chr19	902454	1	UTR3	UTR3:EXON_MRNA	NDUFA13	ENSG00000186010.19	ENST00000503283.5	protein_coding	protein_coding	protein_coding	protein_coding	20	33	2	1.92247	2.00022	2.07797	0.00202488	2.86814e-5	0.0511848	0.0014112
chr16	28608477	28608540	8540568	0	-	0.587302	(0.57,0.629]	chr16	803156	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SULT1A1	ENSG00000196502.13	ENST00000395609.6:ENST00000569554.5:ENST00000314752.12:ENST00000350842.8:ENST00000564818.5:ENST00000567998.5:ENST00000562058.5:ENST00000563493.1:ENST00000566189.5:ENST00000567512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	55	2	1.78248	1.9998500000000001	2.21722	6.32482e-6	2.06381e-6	3.69241e-4	1.34439e-4
chr17	40628938	40628993	8928306	0	-	0.472727	(0.459,0.49]	chr17	856871	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SMARCE1	ENSG00000073584.20	ENST00000348513.12:ENST00000643318.1:ENST00000644527.1:ENST00000646242.1:ENST00000578112.6:ENST00000647508.1:ENST00000644701.1:ENST00000643030.1:ENST00000646401.1:ENST00000580419.6:ENST00000645227.1:ENST00000643378.1:ENST00000647294.1:ENST00000642576.1:ENST00000400122.8:ENST00000647515.1:ENST00000377808.9:ENST00000644523.1:ENST00000469334.6:ENST00000643683.1:ENST00000644443.1:ENST00000646283.1:ENST00000264640.9:ENST00000643893.1:ENST00000644909.1:ENST00000645152.1:ENST00000646856.1:ENST00000431889.6:ENST00000646448.1:ENST00000578044.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	29	2	1.99471	1.99965	2.00459	3.70797e-4	2.56286e-4	0.012841	0.00911512
chrX	77633206	77633295	10383597	0	-	0.348315	(0.32,0.36]	chrX	1030452	1	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000675908.1:ENST00000400866.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	27	2	1.51456	1.99855	2.48254	0.00425279	5.50175e-6	0.0859251	3.25322e-4
chr22	35400133	35400208	9937784	0	+	0.56	(0.526,0.57]	chr22	987456	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	44	2	1.7759	1.997695	2.21949	2.88786e-4	6.08346e-7	0.0102604	4.43567e-5
chr16	29807431	29807521	8366926	0	+	0.722222	(0.629,1]	chr16	780575	6	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MAZ	ENSG00000103495.15	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000563402.1:ENST00000566906.6:ENST00000219782.10:ENST00000561855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	60	2	1.58012	1.99573	2.41134	1.86402e-4	1.94183e-7	0.00708337	1.5719e-5
chr17	7897082	7897152	8642429	0	+	0.485714	(0.459,0.49]	chr17	817475	1	CDS	CDS:EXON_MRNA	CHD3	ENSG00000170004.18	ENST00000380358.9:ENST00000672838.1:ENST00000330494.12:ENST00000358181.8:ENST00000452447.1	protein_coding	protein_coding	protein_coding	protein_coding	66	77	2	1.93609	1.995465	2.05484	2.01365e-8	4.33631e-9	1.96891e-6	4.67521e-7
chr12	20624809	20624909	6844619	0	+	0.45	(0.424,0.459]	chr12	625071	30	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	31	2	1.72809	1.994585	2.26108	4.92189e-4	3.83892e-5	0.0161704	0.00183147
chr22	35400208	35400308	9937785	0	+	0.6	(0.57,0.629]	chr22	987457	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	18	2	1.84131	1.994445	2.14758	0.0066476	0.00585462	0.116278	0.108648
chr17	4960458	4960547	8853213	0	-	0.426966	(0.424,0.459]	chr17	846116	1	CDS_START	CDS_START:CDS:EXON_MRNA	SPAG7	ENSG00000091640.8	ENST00000206020.8:ENST00000575142.5:ENST00000573366.5:ENST00000575784.2:ENST00000572148.1:ENST00000573805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	97	93	2	1.88364	1.994275	2.10491	5.9387e-10	2.00931e-11	7.22865e-8	2.9524e-9
chr15	56678742	56678821	8185011	0	-	0.468354	(0.459,0.49]	chr15	759217	2	CDS	CDS:EXON_MRNA	ZNF280D	ENSG00000137871.21	ENST00000267807.12:ENST00000559237.5:ENST00000558067.5:ENST00000560002.5:ENST00000558002.5:ENST00000560121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	16	2	1.82408	1.99263	2.16118	0.00689809	0.00659564	0.120398	0.117905
chr10	50091430	50091518	5847218	0	+	0.579545	(0.57,0.629]	chr10	525838	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WASHC2A	ENSG00000099290.17	ENST00000611324.4:ENST00000351071.11:ENST00000314664.12:ENST00000434114.6:ENST00000282633.10:ENST00000492914.1:ENST00000399339.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	49	75	2	1.79559	1.9891299999999998	2.18267	3.75146e-7	1.39483e-8	2.84782e-5	1.38703e-6
chr20	34440154	34440249	9633026	0	+	0.442105	(0.424,0.459]	chr20	950782	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000662871.1:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	14	2	1.86286	1.98802	2.11318	0.0111807	0.00721518	0.181488	0.127521
chr6	32972898	32972927	3757866	0	+	0.448276	(0.424,0.459]	chr6	342691	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	24	2	1.57137	1.98783	2.40429	0.00203802	4.65683e-4	0.0513878	0.0153131
chr19	33094171	33094269	9325002	0	+	0.459184	(0.424,0.459]	chr19	903857	1	CDS	CDS:EXON_MRNA:INTRON	GPATCH1	ENSG00000076650.7	ENST00000592165.1:ENST00000170564.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	14	2	1.76012	1.98711	2.2141	0.0104202	0.00829078	0.170769	0.145308
chr1	246849806	246849902	918920	0	-	0.375	(0.36,0.392]	chr1	101077	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000498601.1:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	75	59	2	1.539	1.986545	2.43409	9.11892e-5	1.80701e-11	0.00387303	2.68903e-9
chr13	110893027	110893088	7566736	0	-	0.393443	(0.392,0.424]	chr13	696112	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	115	95	2	1.58167	1.9864249999999999	2.39118	7.82428e-8	1e-12	6.7773e-6	1.73382e-10
chr3	37326642	37326740	1828941	0	+	0.285714	[0,0.32]	chr3	185140	32	CDS	CDS:EXON_MRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	58	40	2	1.35878	1.984775	2.61077	0.00248526	3.30665e-9	0.0597943	3.62413e-7
chr17	68043837	68043915	8789252	0	+	0.474359	(0.459,0.49]	chr17	836122	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	19	2	1.89353	1.9845799999999998	2.07563	0.00874229	0.0013969	0.144342	0.0371248
chr17	1684471	1684571	8839427	0	-	0.62	(0.57,0.629]	chr17	843921	1	CDS_START	CDS_START:CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000571346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	55	2	1.64013	1.9838550000000001	2.32758	7.07366e-5	1.42609e-7	0.00306893	1.18497e-5
chr3	37327430	37327529	1828949	0	+	0.353535	(0.32,0.36]	chr3	185140	40	CDS	CDS:EXON_MRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	67	48	2	1.93841	1.982195	2.02598	1.71966e-6	9.77064e-7	1.12611e-4	6.92601e-5
chrM	11743	11842	10480494	0	+	0.414141	(0.392,0.424]	chrM	1039008	10	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	43	37	2	1.66446	1.9799200000000001	2.29538	5.30242e-4	8.64583e-7	0.0169138	6.19197e-5
chr2	24300083	24300171	1397452	0	-	0.5	(0.49,0.526]	chr2	144947	3	CDS	CDS:EXON_MRNA	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5	protein_coding	protein_coding	protein_coding	protein_coding	51	66	2	1.96669	1.97959	1.99249	6.66361e-7	5.40424e-8	4.84093e-5	4.78807e-6
chr19	54458510	54458608	9386763	0	+	0.612245	(0.57,0.629]	chr19	915849	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	13	21	2	1.92247	1.9785149999999998	2.03456	0.00561954	0.00202488	0.105396	0.0511848
chr8	144517700	144517784	5309665	0	-	0.785714	(0.629,1]	chr8	475180	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RECQL4	ENSG00000160957.15	ENST00000621189.4:ENST00000617875.6	protein_coding	protein_coding	protein_coding	protein_coding	41	91	2	1.60744	1.977795	2.34815	7.48842e-6	1.39308e-10	4.32077e-4	1.85298e-8
chr10	101818022	101818110	6238398	0	-	0.75	(0.629,1]	chr10	558318	1	UTR5	UTR5:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000357797.9:ENST00000370094.7	protein_coding	protein_coding	protein_coding	protein_coding	39	87	2	1.89812	1.977665	2.05721	1.8581e-7	4.09632e-8	1.49891e-5	3.74148e-6
chr1	110044839	110044905	254864	0	+	0.439394	(0.424,0.459]	chr1	26313	1	CDS	CDS:UTR3:EXON_MRNA	STRIP1	ENSG00000143093.15	ENST00000369796.5:ENST00000369795.8:ENST00000485775.5:ENST00000473429.5:ENST00000535003.5:ENST00000539541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	16	2	1.76012	1.9758900000000001	2.19166	0.0104202	0.00272868	0.170769	0.0646726
chr12	57230932	57231000	6924034	0	+	0.588235	(0.57,0.629]	chr12	633189	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000557740.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000553324.5:ENST00000553950.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000557703.5:ENST00000554310.5:ENST00000553529.5:ENST00000557302.1:ENST00000554656.5:ENST00000557427.5:ENST00000553474.5:ENST00000555773.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000553949.1:ENST00000556737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	41	2	1.95259	1.974695	1.9968	1.60512e-4	2.10188e-5	0.00621703	0.00105012
chr1	201829156	201829209	398913	0	+	0.735849	(0.629,1]	chr1	42736	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	IPO9	ENSG00000198700.10	ENST00000464348.5:ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	26	2	1.70364	1.972345	2.24105	0.008907	6.77648e-4	0.146898	0.0206437
chr15	65782318	65782417	8219944	0	-	0.50505	(0.49,0.526]	chr15	762729	205	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	19	2	1.80978	1.971215	2.13265	0.00558714	0.002923	0.105396	0.0671417
chr1	156320838	156320931	781044	0	-	0.408602	(0.392,0.424]	chr1	86665	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	61	50	2	1.59925	1.967605	2.33596	4.72702e-5	3.42848e-8	0.00218173	3.20512e-6
chr7	102558495	102558595	4793243	0	-	0.56	(0.526,0.57]	chr7	430367	127	INTRON	INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000503564.5:ENST00000511773.5:ENST00000513506.6:ENST00000508848.5:ENST00000504677.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	26	2	1.62298	1.967215	2.31145	0.00270968	3.48732e-4	0.0641652	0.0121642
chr2	71331801	71331875	1070263	0	+	0.594595	(0.57,0.629]	chr2	113691	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	32	2	1.7861	1.9668	2.1475	0.00258602	3.66557e-5	0.0621431	0.00175919
chrX	54548761	54548859	10132880	0	+	0.469388	(0.459,0.49]	chrX	1010793	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674300.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	36	2	1.78734	1.96498	2.14262	2.3439e-4	2.53892e-5	0.00856711	0.00124942
chr21	35364907	35365007	9868138	0	-	0.44	(0.424,0.459]	chr21	979343	2995	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	16	16	2	1.92617	1.9649349999999999	2.0037	0.00795079	0.00403396	0.139624	0.0817225
chr3	50092042	50092125	1869452	0	+	0.518072	(0.49,0.526]	chr3	189901	1	CDS	CDS:UTR3:EXON_MRNA	RBM6:RBM5	ENSG00000004534.15:ENSG00000003756.17	ENST00000434592.5:ENST00000347869.8:ENST00000404526.6:ENST00000469838.5:ENST00000433556.6:ENST00000441305.5:ENST00000438369.5:ENST00000464087.6:ENST00000492472.1:ENST00000437500.5:ENST00000417905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	73	2	1.46309	1.962895	2.4627	9.22675e-5	3.16969e-12	0.00388567	5.16964e-10
chr1	45617462	45617526	136936	0	+	0.515625	(0.49,0.526]	chr1	16832	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1:ENST00000472408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	32	42	2	1.72078	1.962425	2.20407	3.76683e-4	1.71788e-6	0.013042	1.14175e-4
chr1	111762693	111762782	258945	0	+	0.47191	(0.459,0.49]	chr1	26749	1	CDS	CDS:UTR3:EXON_MRNA	DDX20	ENSG00000064703.13	ENST00000679724.1:ENST00000533164.6:ENST00000679774.1:ENST00000679498.1:ENST00000534200.2:ENST00000369702.5:ENST00000680627.1:ENST00000681559.1:ENST00000680415.1:ENST00000680038.1:ENST00000679381.1:ENST00000681529.1:ENST00000680383.1:ENST00000680317.1:ENST00000680936.1:ENST00000679576.1:ENST00000680518.1:ENST00000681747.1:ENST00000680983.1:ENST00000475700.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	22	2	1.44308	1.96176	2.48044	0.0111472	2.84436e-4	0.179111	0.0100538
chr9	130884063	130884158	5516777	0	+	0.526316	(0.526,0.57]	chr9	495109	2	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	24	32	2	1.92138	1.96158	2.00178	3.31098e-4	1.94483e-4	0.0113051	0.00738001
chr15	67181382	67181453	8014340	0	+	0.577465	(0.57,0.629]	chr15	741084	3	CDS	CDS:EXON_MRNA:INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1:ENST00000680689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	73	2	1.59897	1.960145	2.32132	1.57907e-5	5.1514e-10	8.21823e-4	6.3101e-8
chr19	54455021	54455092	9386720	0	+	0.605634	(0.57,0.629]	chr19	915823	2	CDS	CDS:EXON_MRNA	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000439657.5:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	21	33	2	1.89081	1.96014	2.02947	0.00118867	7.04217e-5	0.031619	0.00305609
chr13	21377611	21377703	7462494	0	-	0.630435	(0.629,1]	chr13	687460	6	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000626464.2:ENST00000464055.5:ENST00000320220.13:ENST00000477811.5:ENST00000494731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	46	98	2	1.5718	1.959975	2.34815	1.9495e-6	1.39308e-10	1.27324e-4	1.85298e-8
chr5	134924644	134924743	3323311	0	+	0.40404	(0.392,0.424]	chr5	305200	1	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	23	2	1.55654	1.956595	2.35665	0.00788235	6.8706e-5	0.138566	0.00299946
chr17	1058744	1058805	8834394	0	-	0.540984	(0.526,0.57]	chr17	843050	1	CDS	CDS:EXON_MRNA:INTRON	ABR	ENSG00000159842.16	ENST00000574139.7:ENST00000302538.10:ENST00000544583.6:ENST00000574437.5:ENST00000291107.6:ENST00000536794.6:ENST00000575770.5:ENST00000576964.5:ENST00000574544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	16	2	1.73096	1.9565000000000001	2.18204	0.00982663	0.00795889	0.16817	0.13377
chr1	116373523	116373623	269076	0	+	0.78	(0.629,1]	chr1	27671	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP1A1	ENSG00000163399.16	ENST00000418797.5:ENST00000295598.10:ENST00000488733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	30	2	1.90553	1.95575	2.00597	0.0015276	0.00128938	0.039835	0.0340399
chr17	45149583	45149681	8724933	0	+	0.602041	(0.57,0.629]	chr17	828827	4	CDS	CDS:EXON_MRNA	HEXIM1	ENSG00000186834.4	ENST00000332499.4	protein_coding	protein_coding	protein_coding	protein_coding	122	183	2	1.95442	1.95539	1.95636	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	30619708	30619806	3752600	0	+	0.581633	(0.57,0.629]	chr6	340741	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	46	70	2	1.76424	1.95448	2.14472	3.55597e-6	1.3593e-8	2.1793e-4	1.34919e-6
chr1	632037	632133	26	0	+	0.489583	(0.459,0.49]	chr1	3	11	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	24	28	2	1.47818	1.95413	2.43008	0.0077395	1.5172e-5	0.130982	7.8707e-4
chr11	1995911	1996003	6536254	0	-	0.478261	(0.459,0.49]	chr11	593597	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H19	ENSG00000130600.20	ENST00000414790.7:ENST00000428066.7:ENST00000412788.6:ENST00000691195.1:ENST00000442037.6:ENST00000439725.5:ENST00000411861.5:ENST00000417089.6:ENST00000431095.7:ENST00000436715.5:ENST00000447298.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	25	29	2	1.79469	1.953465	2.11224	7.08025e-4	2.14567e-4	0.0212569	0.00797476
chr19	7620845	7620940	9425833	0	-	0.568421	(0.526,0.57]	chr19	923286	1	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5:ENST00000600230.1:ENST00000596134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	19	2	1.87919	1.95275	2.02631	0.00448098	0.00417443	0.0875511	0.084478
chr11	93176904	93177004	6708310	0	-	0.43	(0.424,0.459]	chr11	612821	63	INTRON	INTRON	SLC36A4	ENSG00000180773.15	ENST00000326402.9:ENST00000529184.5:ENST00000534116.1:ENST00000524875.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	26	2	1.65828	1.951385	2.24449	0.00948512	1.36835e-5	0.156278	7.18653e-4
chr11	68591575	68591640	6429829	0	+	0.384615	(0.36,0.392]	chr11	580104	1	CDS	CDS:UTR3:EXON_MRNA	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000534190.5:ENST00000525421.5:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	32	2	1.77302	1.951235	2.12945	3.74919e-4	1.9304e-5	0.0129823	9.79045e-4
chrM	8365	8465	10480459	0	+	0.4	(0.392,0.424]	chrM	1038995	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-ATP8	ENSG00000228253.1	ENST00000361851.1	protein_coding	protein_coding	protein_coding	protein_coding	30	27	2	1.58975	1.950765	2.31178	0.0101397	4.40244e-6	0.170122	2.60751e-4
chr12	14801319	14801383	7091970	0	-	0.484375	(0.459,0.49]	chr12	652283	1	CDS_START	CDS_START:CDS:EXON_MRNA	WBP11	ENSG00000084463.8	ENST00000261167.7:ENST00000535638.5:ENST00000544764.5:ENST00000535328.1:ENST00000543316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	60	68	2	1.8689	1.946535	2.02417	8.80147e-7	1.07777e-8	6.2793e-5	1.08617e-6
chr15	99129664	99129764	8096528	0	+	0.46	(0.459,0.49]	chr15	748666	4	CDS	CDS:EXON_MRNA:INTRON	SYNM	ENSG00000182253.15	ENST00000560674.5:ENST00000336292.11:ENST00000328642.11:ENST00000594047.2	protein_coding	protein_coding	protein_coding	protein_coding	28	33	2	1.78082	1.9453	2.10978	0.00147972	1.42356e-5	0.0388667	7.59715e-4
chr5	150396655	150396748	3357141	0	+	0.537634	(0.526,0.57]	chr5	308644	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000515516.1:ENST00000674413.1	protein_coding	protein_coding	protein_coding	protein_coding	31	42	2	1.35238	1.9451049999999999	2.53783	0.00657584	2.17509e-8	0.115091	2.09745e-6
chr2	61502264	61502310	1459485	0	-	0.347826	(0.32,0.36]	chr2	151760	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	62	43	2	1.87739	1.9443199999999998	2.01125	8.02734e-6	4.67453e-6	4.54853e-4	2.81003e-4
chr1	50596120	50596216	610906	0	-	0.510417	(0.49,0.526]	chr1	68237	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	56	73	2	1.36091	1.943705	2.5265	3.41635e-4	1e-12	0.0116569	1.72912e-10
chr15	51537668	51537759	8168166	0	-	0.428571	(0.424,0.459]	chr15	757482	3	CDS	CDS:EXON_MRNA	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000449909.7	protein_coding	protein_coding	protein_coding	protein_coding	59	57	2	1.53787	1.942765	2.34766	2.46146e-4	1.94717e-10	0.00890566	2.53571e-8
chr12	122322901	122323000	7307430	0	-	0.424242	(0.392,0.424]	chr12	674748	9	CDS	CDS:EXON_MRNA:INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000648993.1:ENST00000537123.2	protein_coding	protein_coding	protein_coding	protein_coding	21	18	2	1.86684	1.9416449999999998	2.01645	0.00407604	0.00268808	0.0825752	0.0639973
chr19	10166665	10166685	9432793	0	-	0.4	(0.392,0.424]	chr19	924802	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000589349.5:ENST00000591764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	45	2	1.17929	1.94034	2.70139	0.00765134	1.08976e-10	0.130982	1.4581e-8
chr20	37511094	37511193	9741114	0	-	0.474747	(0.459,0.49]	chr20	964944	15	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	36	40	2	1.80646	1.94015	2.07384	7.18353e-5	2.66444e-5	0.00312099	0.00130919
chr1	222857576	222857676	437479	0	+	0.38	(0.36,0.392]	chr1	47248	203	INTRON	INTRON	DISP1	ENSG00000154309.9	ENST00000674736.1:ENST00000675850.1:ENST00000674709.1:ENST00000676412.1:ENST00000676139.1:ENST00000495684.2:ENST00000675039.1:ENST00000675961.1:ENST00000676303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	14	2	1.80251	1.93994	2.07737	0.00949718	0.00757126	0.16275	0.130982
chr17	28673463	28673501	8684989	0	+	0.526316	(0.526,0.57]	chr17	821881	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000577713.1:ENST00000584312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	44	2	1.91466	1.938695	1.96273	4.63867e-5	1.25484e-5	0.00213411	6.61709e-4
chrM	9206	9306	10480469	0	+	0.54	(0.526,0.57]	chrM	1039001	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	MT-ATP6:MT-CO3	ENSG00000198899.2:ENSG00000198938.2	ENST00000361899.2:ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	22	29	2	1.70716	1.93737	2.16758	0.00245686	9.89772e-5	0.0590256	0.00409556
chr10	42796473	42796567	5840432	0	+	0.43617	(0.424,0.459]	chr10	524877	1	CDS	CDS:EXON_MRNA	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	60	56	2	1.64097	1.9353349999999998	2.2297	4.17861e-5	6.37558e-9	0.00197827	6.66424e-7
chr3	15039121	15039174	1777583	0	+	0.415094	(0.392,0.424]	chr3	182754	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	32	25	2	1.2938	1.929645	2.56549	0.0120529	2.23472e-5	0.184394	0.00113549
chr17	43271455	43271555	8938176	0	-	0.35	(0.32,0.36]	chr17	859071	413	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4841	3289	2	1.89466	1.929605	1.96455	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	45863125	45863194	9514396	0	-	0.724638	(0.629,1]	chr19	938735	2	UTR5	UTR5:EXON_MRNA	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	96	2	1.20376	1.929555	2.65535	3.579e-4	1e-12	0.0121355	1.72912e-10
chr3	143028564	143028646	2036659	0	+	0.414634	(0.392,0.424]	chr3	203578	2	CDS	CDS:UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000472373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	148	121	2	1.65151	1.9294	2.20729	1.85604e-9	1e-12	2.1247e-7	1.73382e-10
chr7	102667027	102667106	4793880	0	-	0.759494	(0.629,1]	chr7	430542	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POLR2J2	ENSG00000228049.7	ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding	35	71	2	1.4449	1.92934	2.41378	6.54068e-5	8.04113e-8	0.00285877	6.95765e-6
chr19	651610	651691	9400431	0	-	0.802469	(0.629,1]	chr19	918308	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RNF126	ENSG00000070423.18	ENST00000292363.10:ENST00000605891.5:ENST00000590885.6:ENST00000589762.5:ENST00000591394.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	27	2	1.61335	1.9272	2.24105	0.008867	6.77648e-4	0.146312	0.0206437
chrX	53147944	53148044	10132269	0	+	0.4	(0.392,0.424]	chrX	1010677	46	INTRON	INTRON	KANTR	ENSG00000232593.7	ENST00000603385.2	protein_coding	processed_transcript	protein_coding	processed_transcript	20	17	2	1.66839	1.925705	2.18302	0.0122291	0.00136698	0.186601	0.0364621
chr4	52712632	52712720	2619134	0	+	0.795455	(0.629,1]	chr4	251030	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR	ENSG00000226950.8	ENST00000411630.7:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2	lncRNA	lncRNA	lncRNA	lncRNA	53	109	2	1.62341	1.9222000000000001	2.22099	9.23049e-8	4.03723e-10	7.91017e-6	4.99987e-8
chr12	56725252	56725349	7178935	0	-	0.597938	(0.57,0.629]	chr12	662480	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000548563.5:ENST00000546392.6:ENST00000547914.5:ENST00000551775.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	54	2	1.76881	1.9221	2.07539	4.70893e-5	7.83524e-7	0.00216476	5.54862e-5
chrX	119838366	119838446	10416403	0	-	0.425	(0.424,0.459]	chrX	1033329	1	CDS	CDS:EXON_MRNA	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6:ENST00000478840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	34	2	1.37711	1.9217250000000001	2.46634	0.00509029	7.26716e-7	0.0986985	5.25125e-5
chr5	160404808	160404880	3654055	0	-	0.388889	(0.36,0.392]	chr5	332507	1	CDS	CDS:EXON_MRNA	SLU7	ENSG00000164609.10	ENST00000297151.9	protein_coding	protein_coding	protein_coding	protein_coding	28	22	2	1.66353	1.920385	2.17724	0.0110506	7.63222e-5	0.179068	0.0032627
chr6	35287645	35287745	3764035	0	+	0.59	(0.57,0.629]	chr6	343931	1	CDS	CDS:EXON_MRNA	ZNF76	ENSG00000065029.15	ENST00000491400.5:ENST00000229405.8:ENST00000469195.5:ENST00000486891.5:ENST00000460229.1:ENST00000373953.8:ENST00000339411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	43	2	1.76023	1.9191	2.07797	1.12302e-4	2.86814e-5	0.00453419	0.0014112
chr17	43245759	43245859	8937919	0	-	0.35	(0.32,0.36]	chr17	859071	156	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4677	3151	2	1.90878	1.9187349999999999	1.92869	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	18450875	18450975	9457758	0	-	0.58	(0.57,0.629]	chr19	930100	5	CDS	CDS:UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	16	2	1.87014	1.91548	1.96082	0.0129867	0.0095418	0.197645	0.163443
chr6	152362246	152362323	4237038	0	-	0.506494	(0.49,0.526]	chr6	385278	2	CDS	CDS:EXON_MRNA	SYNE1	ENSG00000131018.25	ENST00000367255.10:ENST00000423061.6:ENST00000471834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	27	2	1.6416	1.91296	2.18432	0.00482227	1.20879e-4	0.0920354	0.00486647
chr5	154445595	154445680	3644192	0	-	0.6	(0.57,0.629]	chr5	331691	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SAP30L-AS1	ENSG00000245275.8	ENST00000658072.1:ENST00000519727.5:ENST00000652933.1:ENST00000524264.6:ENST00000652895.1:ENST00000501280.4:ENST00000522312.1	lncRNA	lncRNA	lncRNA	lncRNA	14	21	2	1.55068	1.9119800000000002	2.27328	0.0112891	0.00157746	0.181488	0.0410987
chr1	1891017	1891117	495792	0	-	0.8	(0.629,1]	chr1	53116	3	UTR5	UTR5:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	14	31	2	1.62665	1.9101249999999999	2.1936	0.00578933	2.90401e-4	0.107492	0.0102379
chr12	20423919	20424019	6842603	0	+	0.39	(0.36,0.392]	chr12	625044	533	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	28	2	1.54349	1.90896	2.27443	0.00279444	2.21123e-5	0.0645347	0.00112425
chr19	41869180	41869214	9353414	0	+	0.5	(0.49,0.526]	chr19	909160	1	CDS	CDS:UTR3:EXON_MRNA	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000221975.6:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	33	2	1.5532	1.9084649999999999	2.26373	0.00176161	3.66048e-5	0.045752	0.00172971
chr13	106567572	106567654	7563198	0	-	0.573171	(0.57,0.629]	chr13	695641	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	458	661	2	1.88164	1.9074550000000001	1.93327	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	38871901	38871945	10039013	0	-	0.568182	(0.526,0.57]	chr22	1000897	1	CDS	CDS:EXON_MRNA	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	16	2	1.82695	1.90551	1.98407	0.0117294	0.00795663	0.188071	0.13377
chr4	13603796	13603895	2841344	0	-	0.393939	(0.392,0.424]	chr4	269119	50	CDS	CDS:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	40	33	2	1.76443	1.90354	2.04265	0.00111759	8.03602e-6	0.0298776	4.54944e-4
chr11	62726968	62727056	6617122	0	-	0.818182	(0.629,1]	chr11	604118	5	CDS	CDS:EXON_MRNA	HNRNPUL2	ENSG00000214753.4	ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding	16	35	2	1.90012	1.902825	1.90553	0.00128938	4.11354e-4	0.0340399	0.0138505
chr20	34290449	34290499	9727718	0	-	0.58	(0.57,0.629]	chr20	963042	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	23	2	1.79983	1.90276	2.00569	0.00456803	0.00170941	0.0921305	0.0429464
chr13	45341140	45341212	7514920	0	-	0.722222	(0.629,1]	chr13	691037	2	UTR5	UTR5:EXON_MRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379055.5:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	31	2	1.89434	1.898045	1.90175	0.00310036	7.02086e-4	0.0697855	0.0210808
chr16	28951011	28951111	8364398	0	+	0.81	(0.629,1]	chr16	780172	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000565919.1:ENST00000562977.1:ENST00000565752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	31	2	1.89434	1.898045	1.90175	0.00310036	7.02086e-4	0.0697855	0.0210808
chr6	165839792	165839892	4269144	0	-	0.54	(0.526,0.57]	chr6	386909	107	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	39	2	1.87858	1.895265	1.91195	1.86606e-4	4.00901e-5	0.00695874	0.00190526
chr6	24780662	24780740	3743957	0	+	0.410256	(0.392,0.424]	chr6	339204	1	CDS	CDS:EXON_MRNA	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5:ENST00000378059.3	protein_coding	protein_coding	protein_coding	protein_coding	54	44	2	1.48573	1.8939050000000002	2.30208	8.23494e-4	3.71633e-8	0.02391	3.41289e-6
chr16	67167137	67167222	8408331	0	+	0.6	(0.57,0.629]	chr16	786959	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSF4	ENSG00000102878.18	ENST00000522870.5:ENST00000522295.5:ENST00000434833.6:ENST00000521374.6:ENST00000521314.5:ENST00000523562.5:ENST00000521624.5:ENST00000584272.5:ENST00000517685.5:ENST00000523077.2:ENST00000517867.2:ENST00000517729.5:ENST00000519224.5:ENST00000517750.5:ENST00000684701.1:ENST00000517680.5:ENST00000683295.1:ENST00000522027.5:ENST00000522459.5:ENST00000519105.5:ENST00000520528.2:ENST00000519601.5:ENST00000520833.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	45	2	1.40045	1.8934099999999998	2.38637	0.00135278	1.05946e-6	0.0360954	7.36136e-5
chr1	42696198	42696288	124875	0	+	0.444444	(0.424,0.459]	chr1	14704	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	36	2	1.65386	1.8903500000000002	2.12684	4.57597e-4	1.20551e-5	0.0150584	6.58699e-4
chr1	150226724	150226795	761874	0	-	0.478873	(0.459,0.49]	chr1	82577	1	CDS	CDS:EXON_MRNA:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000534437.1:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5:ENST00000534220.1	protein_coding	protein_coding	protein_coding	protein_coding	102	108	2	1.56276	1.8898599999999999	2.21696	2.04169e-8	1e-12	1.96282e-6	1.72912e-10
chrX	77654148	77654200	10383815	0	-	0.403846	(0.392,0.424]	chrX	1030482	2	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	60	48	2	1.7168	1.88894	2.06108	3.82721e-5	4.23908e-7	0.00182642	3.18839e-5
chr4	41626507	41626607	2612970	0	+	0.35	(0.32,0.36]	chr4	250149	4	SS3_PROX	SS3_PROX:INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512820.5:ENST00000503057.6:ENST00000511496.5:ENST00000514096.5:ENST00000509277.5:ENST00000381753.8:ENST00000396595.7:ENST00000508466.1	protein_coding	protein_coding	protein_coding	protein_coding	23	16	2	1.8866	1.8885	1.8904	0.00554863	0.00509794	0.105396	0.098835
chr12	111669970	111670069	7281200	0	-	0.383838	(0.36,0.392]	chr12	671216	38	INTRON	INTRON	BRAP	ENSG00000089234.16	ENST00000419234.9:ENST00000327551.6:ENST00000547043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	33	24	2	1.63272	1.885655	2.13859	0.00268975	2.55156e-4	0.0640321	0.00915854
chr22	37937149	37937194	9942348	0	+	0.6	(0.57,0.629]	chr22	988654	1	CDS	CDS:UTR3:EXON_MRNA	MICALL1	ENSG00000100139.14	ENST00000454685.6:ENST00000215957.10:ENST00000424008.2:ENST00000445494.6:ENST00000680578.1:ENST00000679832.1:ENST00000681920.1:ENST00000680375.1:ENST00000680501.1:ENST00000402631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	24	2	1.67318	1.8855899999999999	2.098	0.00548201	0.00107583	0.104315	0.0299939
chr16	30711657	30711744	8370206	0	+	0.551724	(0.526,0.57]	chr16	781501	2	CDS	CDS:EXON_MRNA	SRCAP	ENSG00000080603.17	ENST00000262518.9:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding	51	62	2	1.67607	1.8850950000000002	2.09412	6.88867e-6	1.79086e-7	4.00126e-4	1.47288e-5
chr7	128335944	128336042	4841172	0	-	0.408163	(0.392,0.424]	chr7	433574	2	CDS	CDS:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5:ENST00000478061.5:ENST00000488249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	69	55	2	1.59925	1.88482	2.17039	4.72702e-5	1.14342e-8	0.00218173	1.15589e-6
chr6	31535176	31535271	4034874	0	-	0.557895	(0.526,0.57]	chr6	365724	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	61	75	2	1.87716	1.883705	1.89025	1.36771e-7	6.72405e-8	1.14167e-5	5.93614e-6
chr8	80064565	80064593	5200545	0	-	0.571429	(0.57,0.629]	chr8	465830	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523319.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000520795.5:ENST00000520741.1:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	56	2	1.50345	1.881815	2.26018	4.97092e-4	2.62242e-8	0.0161742	2.49001e-6
chr22	35413930	35413986	9937941	0	+	0.535714	(0.526,0.57]	chr22	987523	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000464908.5:ENST00000493076.5:ENST00000493569.5:ENST00000465557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	21	2	1.58867	1.8815250000000001	2.17438	0.00764291	0.0017777	0.134851	0.0445946
chr17	43264656	43264756	8938108	0	-	0.56	(0.526,0.57]	chr17	859071	345	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	29	38	2	1.59829	1.880875	2.16346	0.00383006	1.49053e-6	0.078873	1.01e-4
chr17	2324688	2324758	8843541	0	-	0.371429	(0.36,0.392]	chr17	844221	1	CDS	CDS:UTR3:EXON_MRNA	TSR1	ENSG00000167721.11	ENST00000301364.10:ENST00000575049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	15	2	1.82723	1.87855	1.92987	0.0107132	0.0051217	0.174915	0.0975711
chr1	223747080	223747165	439447	0	+	0.517647	(0.49,0.526]	chr1	47361	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000483579.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	19	2	1.78795	1.8776549999999999	1.96736	0.00751979	0.00408049	0.132729	0.0825355
chr16	30194184	30194272	8368615	0	+	0.681818	(0.629,1]	chr16	781066	1	CDS	CDS:EXON_MRNA	SLX1A	ENSG00000132207.18	ENST00000251303.11:ENST00000565081.1:ENST00000345535.8:ENST00000563995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	22	2	1.70364	1.8771200000000001	2.0506	0.008907	0.00602676	0.146898	0.111617
chr19	49556548	49556642	9525203	0	-	0.723404	(0.629,1]	chr19	941103	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOSIP	ENSG00000142546.14	ENST00000596358.6:ENST00000339093.7:ENST00000598820.5:ENST00000601015.5:ENST00000601340.5:ENST00000596477.1:ENST00000598550.5:ENST00000599537.5:ENST00000598296.5:ENST00000594932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	10	22	2	1.70364	1.8771200000000001	2.0506	0.008907	0.00602676	0.146898	0.111617
chr2	3547930	3547992	1373327	0	-	0.516129	(0.49,0.526]	chr2	142053	1	CDS	CDS:UTR3:EXON_MRNA	RNASEH1	ENSG00000171865.10	ENST00000315212.4:ENST00000436842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	28	2	1.5254	1.876105	2.22681	0.00501441	1.19295e-4	0.0973621	0.00485874
chr1	91387228	91387328	687204	0	-	0.48	(0.459,0.49]	chr1	74744	10	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	86	92	2	1.86537	1.8755	1.88563	4.40372e-9	1.0981e-9	4.7358e-7	1.29103e-7
chr15	67203547	67203597	8221144	0	-	0.48	(0.459,0.49]	chr15	762876	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000538028.1:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	23	2	1.74537	1.8749799999999999	2.00459	0.0121832	2.56286e-4	0.194706	0.00911512
chr1	109214092	109214128	251185	0	+	0.611111	(0.57,0.629]	chr1	25517	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000482384.1:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	89	126	2	1.8013	1.874715	1.94813	6.35816e-11	1.7272e-11	8.81131e-9	2.59225e-9
chr7	158664239	158664296	4911539	0	-	0.438596	(0.424,0.459]	chr7	438876	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5:ENST00000491792.5:ENST00000472591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	28	2	1.5862	1.8732250000000001	2.16025	0.00292785	6.56294e-5	0.0672158	0.00289616
chr1	36178972	36179025	108524	0	+	0.584906	(0.57,0.629]	chr1	12422	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000487131.3:ENST00000373148.5:ENST00000532131.1:ENST00000487114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	35	52	2	1.54532	1.87297	2.20062	7.6471e-4	1.04118e-7	0.0226131	8.74638e-6
chr12	1110269	1110347	6789478	0	+	0.346154	(0.32,0.36]	chr12	620130	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000539007.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	21	2	1.74711	1.8728099999999999	1.99851	0.00232882	0.00123725	0.0563219	0.0331335
chr9	128257840	128257892	5744935	0	-	0.557692	(0.526,0.57]	chr9	515149	2	CDS	CDS:UTR3:EXON_MRNA	GOLGA2	ENSG00000167110.19	ENST00000421699.8:ENST00000611957.5:ENST00000693185.1:ENST00000686291.1:ENST00000685377.1:ENST00000692923.1:ENST00000610329.5:ENST00000687179.1:ENST00000693514.1:ENST00000687681.1:ENST00000639983.2:ENST00000693736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	20	2	1.71689	1.8716	2.02631	0.0048809	0.00448098	0.0964485	0.0875511
chr17	43241260	43241360	8937874	0	-	0.36	(0.32,0.36]	chr17	859071	111	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3668	2393	2	1.86606	1.8714300000000001	1.8768	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	36376623	36376704	6376905	0	+	0.753086	(0.629,1]	chr11	571143	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR5L	ENSG00000135362.14	ENST00000530639.6:ENST00000529034.5:ENST00000527172.5:ENST00000532121.5:ENST00000526728.5:ENST00000378867.7:ENST00000389693.3:ENST00000524380.5:ENST00000526682.5:ENST00000532843.1:ENST00000527751.5:ENST00000530252.1:ENST00000532578.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	30	2	1.72384	1.87045	2.01706	0.00304962	0.00119963	0.0697855	0.0318965
chr16	89317078	89317178	8623000	0	-	0.45	(0.424,0.459]	chr16	813671	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	28	2	1.77381	1.86775	1.96169	0.00114828	2.16954e-4	0.0316008	0.00797283
chr14	94052997	94053062	7906793	0	-	0.507692	(0.49,0.526]	chr14	728567	1	CDS	CDS:EXON_MRNA:INTRON	DDX24	ENSG00000089737.18	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000556635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	34	41	2	1.49563	1.8667950000000002	2.23796	0.00130872	2.1905e-6	0.0349372	1.42568e-4
chr6	165840192	165840292	4269148	0	-	0.55	(0.526,0.57]	chr6	386909	111	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	18	2	1.82695	1.866405	1.90586	0.00795663	0.00587772	0.13377	0.109026
chrX	123613398	123613477	10420361	0	-	0.367089	(0.36,0.392]	chrX	1033840	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5:ENST00000455053.5:ENST00000355725.8:ENST00000416618.5:ENST00000491737.5:ENST00000464992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	69	49	2	1.80211	1.86623	1.93035	9.13094e-6	1.54264e-6	5.09491e-4	1.04389e-4
chr6	43572505	43572578	4066915	0	-	0.465753	(0.459,0.49]	chr6	371048	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398799.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	43	46	2	1.74704	1.865105	1.98317	4.12752e-5	8.74289e-6	0.00195466	4.89814e-4
chr16	14928380	14928452	8331438	0	+	0.666667	(0.629,1]	chr16	776050	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P3:NPIPA1	ENSG00000183458.14:ENSG00000183426.17	ENST00000534164.6:ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	55	113	2	1.74393	1.8650799999999998	1.98623	5.58809e-8	4.87202e-10	4.90771e-6	5.96437e-8
chr10	68337926	68337996	5871307	0	+	0.457143	(0.424,0.459]	chr10	526739	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000486854.5:ENST00000467249.1:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	23	2	1.53651	1.86489	2.19327	0.00658627	3.28502e-4	0.11779	0.0112239
chr4	89835567	89835667	2957940	0	-	0.48	(0.459,0.49]	chr4	277941	1	CDS_START	CDS_START:CDS:EXON_MRNA	SNCA	ENSG00000145335.17	ENST00000673902.1:ENST00000336904.7:ENST00000394991.8:ENST00000420646.6:ENST00000618500.4:ENST00000394989.6:ENST00000673718.1:ENST00000674129.1:ENST00000345009.8:ENST00000394986.5:ENST00000508895.5:ENST00000506244.5:ENST00000505199.5:ENST00000611107.1:ENST00000502987.5:ENST00000506691.1	protein_coding	protein_coding	protein_coding	protein_coding	56	59	2	1.68023	1.86453	2.04883	6.18686e-6	3.73892e-7	3.61712e-4	2.86561e-5
chr4	41662820	41662902	2613349	0	+	0.536585	(0.526,0.57]	chr4	250217	1	CDS	CDS:EXON_MRNA	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512820.5:ENST00000503057.6:ENST00000511496.5:ENST00000514096.5:ENST00000509277.5:ENST00000381753.8:ENST00000396595.7:ENST00000508466.1	protein_coding	protein_coding	protein_coding	protein_coding	131	155	2	1.75191	1.861605	1.9713	1e-12	1e-12	1.73382e-10	1.72912e-10
chr4	73140094	73140188	2915946	0	-	0.468085	(0.459,0.49]	chr4	274458	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	37	2	1.3832	1.861475	2.33975	0.010432	2.25288e-7	0.170384	1.8158e-5
chr1	999873	999973	491059	0	-	0.77	(0.629,1]	chr1	51983	1	CDS_START	CDS_START:CDS:EXON_MRNA	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	45	2	1.59383	1.86073	2.12763	0.00255906	6.83683e-6	0.06152	3.97186e-4
chr22	29268254	29268336	9923197	0	+	0.597561	(0.57,0.629]	chr22	985489	4	UTR5	UTR5:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	53	2	1.83422	1.85926	1.8843	2.42084e-5	7.44567e-6	0.00120869	4.27499e-4
chr15	90595872	90595970	8080963	0	+	0.591837	(0.57,0.629]	chr15	747257	4	INTRON	INTRON	CRTC3	ENSG00000140577.17	ENST00000268184.11:ENST00000420329.6:ENST00000691029.1:ENST00000686240.1:ENST00000560098.5:ENST00000561218.5:ENST00000692149.1:ENST00000558619.5:ENST00000687075.1:ENST00000561119.5:ENST00000558005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	41	2	1.66085	1.85916	2.05747	0.00102301	9.43234e-6	0.0285733	5.26265e-4
chr1	244864010	244864108	910909	0	-	0.683673	(0.629,1]	chr1	100874	5	CDS	CDS:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000638952.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	80	163	2	1.85731	1.858465	1.85962	1.88349e-11	1e-12	2.78789e-9	1.73382e-10
chr3	12841485	12841582	2176549	0	-	0.628866	(0.57,0.629]	chr3	212661	14	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	63	2	1.74598	1.85807	1.97016	1.66771e-5	2.56175e-7	8.58231e-4	2.02856e-5
chr17	47619008	47619086	8734232	0	+	0.525641	(0.49,0.526]	chr17	830011	1	CDS	CDS:UTR3:EXON_MRNA	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000531486.1:ENST00000528565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	47	2	1.64747	1.85716	2.06685	2.11064e-4	1.93376e-6	0.00785	1.26715e-4
chr1	149944880	149944972	761115	0	-	0.597826	(0.57,0.629]	chr1	82498	11	CDS	CDS:EXON_MRNA	OTUD7B	ENSG00000264522.6	ENST00000581312.6	protein_coding	protein_coding	protein_coding	protein_coding	48	68	2	1.84197	1.8567900000000002	1.87161	2.47621e-6	3.39626e-7	1.56849e-4	2.599e-5
chr2	86033723	86033787	1502778	0	-	0.3125	[0,0.32]	chr2	155737	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1:ENST00000496892.5:ENST00000492034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	17	2	1.74546	1.852815	1.96017	0.012439	0.00148247	0.198322	0.0385639
chr1	633048	633145	35	0	+	0.443299	(0.424,0.459]	chr1	4	4	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	36	32	2	1.57137	1.85222	2.13307	0.00203802	1.92313e-5	0.0513878	9.75522e-4
chr13	106567654	106567736	7563199	0	-	0.768293	(0.629,1]	chr13	695641	2	CDS	CDS:EXON_MRNA	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	60	117	2	1.32465	1.851695	2.37874	9.24114e-6	1e-12	5.14007e-4	1.73382e-10
chr17	41982323	41982401	8930638	0	-	0.397436	(0.392,0.424]	chr17	857562	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	78	59	2	1.78722	1.8505449999999999	1.91387	1.47916e-5	3.79251e-8	7.88262e-4	3.46316e-6
chr16	18342656	18342744	8522588	0	-	0.590909	(0.57,0.629]	chr16	800001	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6:ENST00000545152.1:ENST00000538220.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	23	33	2	1.76228	1.850405	1.93853	6.18432e-4	4.48223e-4	0.0191195	0.0147552
chrM	15603	15697	10480526	0	+	0.404255	(0.392,0.424]	chrM	1039012	9	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	32	26	2	1.55654	1.850085	2.14363	0.00788235	3.75533e-5	0.138566	0.00177368
chr10	131955683	131955773	6024731	0	+	0.544444	(0.526,0.57]	chr10	540569	1	CDS	CDS:UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000490777.3:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	20	2	1.64375	1.8489200000000001	2.05409	0.00952582	0.00236757	0.156887	0.0572654
chr9	92274425	92274521	5661472	0	-	0.479167	(0.459,0.49]	chr9	506799	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	26	2	1.81072	1.84688	1.88304	0.00318894	4.09122e-4	0.0723027	0.0138446
chr5	179618144	179618165	3679368	0	-	0.619048	(0.57,0.629]	chr5	334936	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000502632.5:ENST00000519958.5:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000523921.1:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	66	2	1.66301	1.84333	2.02365	1.19648e-5	1.60325e-7	6.56382e-4	1.32081e-5
chr14	105461642	105461736	7769968	0	+	0.574468	(0.57,0.629]	chr14	714107	3	INTRON	INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000481012.5:ENST00000434050.5:ENST00000490198.5:ENST00000550551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	23	2	1.64476	1.842975	2.04119	0.00440259	0.00318262	0.0875511	0.0699484
chr21	43753129	43753217	9823666	0	+	0.522727	(0.49,0.526]	chr21	974239	1	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	32	2	1.53773	1.8427850000000001	2.14784	0.0021173	8.85597e-5	0.0518957	0.00376703
chr1	108617619	108617718	249436	0	+	0.494949	(0.49,0.526]	chr1	25218	8	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	25	30	2	1.63046	1.8398500000000002	2.04924	0.0023358	1.73584e-4	0.0565436	0.00661627
chr2	191685598	191685668	1246919	0	+	0.514286	(0.49,0.526]	chr2	130712	1	CDS	CDS:UTR3:EXON_MRNA	NABP1	ENSG00000173559.15	ENST00000307834.9:ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1:ENST00000410026.7:ENST00000674172.1:ENST00000674187.1:ENST00000307849.7:ENST00000425611.9:ENST00000451500.5:ENST00000409510.5:ENST00000435931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	35	2	1.6221	1.8383	2.0545	0.00473157	7.80153e-6	0.095393	4.42226e-4
chr1	112960476	112960573	261397	0	+	0.443299	(0.424,0.459]	chr1	27051	1	EXON_LNCRNA	EXON_LNCRNA	SLC16A1-AS1	ENSG00000226419.8	ENST00000428411.6:ENST00000416193.5:ENST00000664314.1:ENST00000435800.6:ENST00000654334.1:ENST00000420168.2:ENST00000662852.1:ENST00000627431.2:ENST00000665960.1	lncRNA	lncRNA	lncRNA	lncRNA	31	28	2	1.53651	1.8382800000000001	2.14005	0.00658627	3.07259e-5	0.11779	0.00150583
chr16	4870843	4870907	8310831	0	+	0.5	(0.49,0.526]	chr16	774277	1	CDS	CDS:EXON_MRNA	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000586716.1	protein_coding	protein_coding	protein_coding	protein_coding	29	34	2	1.71877	1.8381949999999998	1.95762	4.14158e-4	2.68019e-4	0.0137829	0.00959029
chr1	28272722	28272793	88137	0	+	0.647887	(0.629,1]	chr1	9580	3	CDS	CDS:EXON_MRNA	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	41	83	2	1.80929	1.837585	1.86588	2.07459e-6	1.89853e-7	1.35082e-4	1.52961e-5
chr5	178860039	178860127	3404411	0	+	0.738636	(0.629,1]	chr5	312662	2	UTR5	UTR5:EXON_MRNA	ZNF354B	ENSG00000178338.11	ENST00000322434.8	protein_coding	protein_coding	protein_coding	protein_coding	43	87	2	1.77669	1.837405	1.89812	6.86827e-7	1.8581e-7	4.97507e-5	1.49891e-5
chr11	67180087	67180187	6423802	0	+	0.37	(0.36,0.392]	chr11	578990	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	29	2	1.83379	1.8367200000000001	1.83965	6.54361e-4	1.82673e-4	0.0199608	0.00688171
chr1	155747828	155747896	307457	0	+	0.514706	(0.49,0.526]	chr1	33813	2	EXON_PSEUDO	EXON_PSEUDO	MSTO2P	ENSG00000203761.5	ENST00000314835.5	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	13	16	2	1.66169	1.8365999999999998	2.01151	0.0126874	0.0107498	0.193485	0.175404
chr17	28842681	28842760	8900341	0	-	0.759494	(0.629,1]	chr17	852766	1	UTR5	UTR5:EXON_MRNA:INTRON	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000579381.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	38	2	1.42377	1.83276	2.24175	0.00933102	2.19773e-5	0.161654	0.00109727
chr17	43255058	43255158	8938012	0	-	0.62	(0.57,0.629]	chr17	859071	249	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	51	70	2	1.58859	1.83201	2.07543	1.04462e-5	6.19491e-8	5.63724e-4	5.52626e-6
chr15	40296521	40296577	8135740	0	-	0.464286	(0.459,0.49]	chr15	752612	1	CDS	CDS:EXON_MRNA	PLCB2	ENSG00000137841.12	ENST00000260402.8:ENST00000557821.5:ENST00000558588.5:ENST00000456256.6:ENST00000558409.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	36	2	1.62697	1.831805	2.03664	8.11627e-4	2.99423e-5	0.0237063	0.00144726
chr7	158656259	158656346	4911454	0	-	0.471264	(0.459,0.49]	chr7	438854	1	CDS	CDS:UTR3:EXON_MRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	52	2	1.37073	1.83136	2.29199	7.90043e-4	2.46325e-8	0.0233193	2.33201e-6
chr11	93667673	93667740	6466204	0	+	0.402985	(0.392,0.424]	chr11	584314	2	CDS	CDS:EXON_MRNA	CEP295	ENSG00000166004.15	ENST00000325212.11	protein_coding	protein_coding	protein_coding	protein_coding	92	70	2	1.82097	1.8311250000000001	1.84128	1.1665e-7	5.44771e-8	9.75243e-6	4.82525e-6
chr8	143931333	143931433	5307068	0	-	0.6	(0.57,0.629]	chr8	474329	4	SS5_PROX	SS5_PROX:INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000687971.1:ENST00000693060.1	protein_coding	protein_coding	protein_coding	protein_coding	32	45	2	1.54532	1.830505	2.11569	7.6471e-4	4.17646e-6	0.0226131	2.48899e-4
chr19	38849866	38849966	9493749	0	-	0.74	(0.629,1]	chr19	934667	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	72	147	2	1.47774	1.8299400000000001	2.18214	7.0758e-7	1e-12	5.11669e-5	1.72912e-10
chr1	246193826	246193926	915394	0	-	0.38	(0.36,0.392]	chr1	100961	2	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	29	2	1.70735	1.82959	1.95183	0.00194002	5.23334e-5	0.0477388	0.00238768
chr17	16158816	16158873	8883024	0	-	0.561404	(0.526,0.57]	chr17	850052	2	CDS	CDS:UTR3:EXON_MRNA	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	21	2	1.72322	1.8287	1.93418	0.00691218	0.00248547	0.12284	0.0597943
chr14	21211809	21211864	7772809	0	-	0.4	(0.392,0.424]	chr14	714923	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555585.5:ENST00000554417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	120	92	2	1.64815	1.8271199999999999	2.00609	1.63425e-7	3.08853e-12	1.34463e-5	5.0441e-10
chr16	28723067	28723163	8363323	0	+	0.552083	(0.526,0.57]	chr16	779833	20	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565099.1:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	56	63	2	1.28481	1.8251750000000002	2.36554	3.57364e-4	3.20652e-9	0.0123931	3.52595e-7
chr11	85664294	85664390	6698938	0	-	0.614583	(0.57,0.629]	chr11	612053	5	CDS	CDS:EXON_MRNA:INTRON	CREBZF	ENSG00000137504.15	ENST00000682836.1:ENST00000527447.2:ENST00000490820.2:ENST00000260058.9:ENST00000531515.5:ENST00000534224.1:ENST00000525639.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	26	2	1.70738	1.8239	1.94042	0.00682193	5.6427e-4	0.119104	0.0178506
chr4	183253857	183253928	2803702	0	+	0.422535	(0.392,0.424]	chr4	265030	1	CDS	CDS:UTR3:EXON_MRNA	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	49	38	2	1.75814	1.821815	1.88549	4.67906e-4	7.64458e-6	0.0153781	4.38159e-4
chr12	118172456	118172524	7294409	0	-	0.485294	(0.459,0.49]	chr12	672864	1	CDS	CDS:EXON_MRNA	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000537305.5:ENST00000537952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	24	2	1.56627	1.8203200000000002	2.07437	0.00513873	7.57758e-4	0.0992178	0.02229
chr19	3979893	3979979	9411745	0	-	0.593023	(0.57,0.629]	chr19	920614	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	78	106	2	1.68336	1.81816	1.95296	1.32661e-8	4.06736e-10	1.31715e-6	5.0351e-8
chr17	29090867	29090926	8901438	0	-	0.59322	(0.57,0.629]	chr17	852996	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000529889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	38	2	1.76228	1.814755	1.86723	6.18432e-4	9.98801e-5	0.0191195	0.00413177
chr5	139322782	139322874	3333360	0	+	0.456522	(0.424,0.459]	chr5	306045	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MATR3	ENSG00000015479.20	ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000504643.5:ENST00000505625.5:ENST00000502422.5:ENST00000512040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	34	2	1.61272	1.812625	2.01253	0.00183444	1.31124e-5	0.0459755	6.89336e-4
chr11	83072051	83072149	6457334	0	+	0.632653	(0.629,1]	chr11	583568	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000656330.1:ENST00000658004.1:ENST00000527627.5:ENST00000669459.2:ENST00000689041.1:ENST00000526795.1:ENST00000501011.8:ENST00000663168.1:ENST00000533528.1:ENST00000655468.1:ENST00000533708.1:ENST00000534499.1	lncRNA	lncRNA	lncRNA	lncRNA	12	24	2	1.52243	1.81091	2.09939	0.0107621	0.00408309	0.175562	0.0825355
chr9	133417744	133417844	5759796	0	-	0.63	(0.629,1]	chr9	517292	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	REXO4	ENSG00000148300.12	ENST00000371935.6:ENST00000371942.8:ENST00000454825.1:ENST00000494045.5:ENST00000478037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	35	2	1.42174	1.8079749999999999	2.19421	0.00428504	3.52396e-4	0.0865533	0.0122629
chr10	103627901	103628001	6245101	0	-	0.47	(0.459,0.49]	chr10	559177	3	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000420222.2:ENST00000691105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	53	55	2	1.10047	1.806645	2.51282	0.00644806	1.77128e-10	0.116758	2.31171e-8
chr1	149944972	149945065	761116	0	-	0.634409	(0.629,1]	chr1	82498	12	CDS	CDS:EXON_MRNA	OTUD7B	ENSG00000264522.6	ENST00000581312.6	protein_coding	protein_coding	protein_coding	protein_coding	30	60	2	1.75312	1.806175	1.85923	2.28422e-4	2.36439e-6	0.00835923	1.51856e-4
chr11	57327796	57327882	6607266	0	-	0.546512	(0.526,0.57]	chr11	601854	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000635721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	25	2	1.59387	1.803965	2.01406	0.0054019	7.77124e-4	0.100734	0.0227185
chr14	77288761	77288831	7871848	0	-	0.442857	(0.424,0.459]	chr14	725717	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POMT2	ENSG00000009830.13	ENST00000261534.9:ENST00000452340.7:ENST00000554767.5:ENST00000556394.2:ENST00000682955.1:ENST00000683380.1:ENST00000682467.1:ENST00000682395.1:ENST00000682795.1:ENST00000682247.1:ENST00000682895.1:ENST00000684259.1:ENST00000684549.1:ENST00000683188.1:ENST00000682459.1:ENST00000683828.1:ENST00000682382.1:ENST00000553880.5:ENST00000557675.5:ENST00000683328.1:ENST00000556851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	22	2	1.53651	1.803185	2.06986	0.00658627	9.14317e-4	0.11779	0.0261524
chr16	14932899	14932971	8331492	0	+	0.652778	(0.629,1]	chr16	776076	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P3:NPIPA1	ENSG00000183458.14:ENSG00000183426.17	ENST00000534164.6:ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	12	25	2	1.78942	1.802635	1.81585	0.00616958	0.00465254	0.114097	0.0897108
chr17	43278054	43278154	8938242	0	-	0.35	(0.32,0.36]	chr17	859071	479	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4682	2906	2	1.78786	1.80008	1.8123	1e-12	1e-12	1.73382e-10	1.72912e-10
chr16	16326864	16326936	8339290	0	+	0.666667	(0.629,1]	chr16	777016	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	44	86	2	1.25089	1.79952	2.34815	4.71145e-4	1.39308e-10	0.0154766	1.85298e-8
chr17	40140713	40140779	8713631	0	+	0.69697	(0.629,1]	chr17	826345	2	CDS	CDS:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000583649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	95	185	2	1.7612	1.79895	1.8367	2.14528e-12	1e-12	3.57808e-10	1.72912e-10
chr17	7501288	7501383	8640881	0	+	0.431579	(0.424,0.459]	chr17	816886	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	103	87	2	1.61823	1.795385	1.97254	6.49295e-7	4.22643e-11	4.69625e-5	5.98193e-9
chr9	120471812	120471878	5713014	0	-	0.469697	(0.459,0.49]	chr9	512158	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	38	2	1.33425	1.79522	2.25619	0.00967133	4.33167e-7	0.165627	3.25139e-5
chr14	105461547	105461642	7769967	0	+	0.663158	(0.629,1]	chr14	714107	2	INTRON	INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000481012.5:ENST00000434050.5:ENST00000490198.5:ENST00000550551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	45	2	1.48067	1.79437	2.10807	0.00132223	5.03059e-5	0.0348948	0.00230367
chr7	102474360	102474447	4792567	0	-	0.62069	(0.57,0.629]	chr7	430195	1	CDS	CDS:EXON_MRNA	POLR2J	ENSG00000005075.16	ENST00000292614.10	protein_coding	protein_coding	protein_coding	protein_coding	24	33	2	1.38948	1.79433	2.19918	0.00690355	4.3919e-5	0.120487	0.0020326
chr2	85647929	85647969	1086582	0	+	0.475	(0.459,0.49]	chr2	115917	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000450066.6:ENST00000613444.4:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000490193.5:ENST00000465514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	19	2	1.76361	1.793845	1.82408	0.00689809	0.00517416	0.120398	0.0992178
chr2	54629125	54629222	1034873	0	+	0.628866	(0.57,0.629]	chr2	110857	3	CDS	CDS:EXON_MRNA	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	17	24	2	1.7861	1.7929650000000001	1.79983	0.00456803	0.00258602	0.0921305	0.0621431
chr15	99129764	99129863	8096529	0	+	0.555556	(0.526,0.57]	chr15	748666	5	CDS	CDS:EXON_MRNA:INTRON	SYNM	ENSG00000182253.15	ENST00000560674.5:ENST00000336292.11:ENST00000328642.11:ENST00000594047.2	protein_coding	protein_coding	protein_coding	protein_coding	21	25	2	1.71162	1.792395	1.87317	0.00345794	0.0013736	0.0738666	0.0360194
chr7	111458555	111458655	4818292	0	-	0.38	(0.36,0.392]	chr7	431941	658	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	28	19	2	1.52693	1.79121	2.05549	0.00851463	0.00188341	0.141193	0.0481459
chr22	35258588	35258686	9936731	0	+	0.55102	(0.526,0.57]	chr22	987261	1	INTRON	INTRON	HMGXB4	ENSG00000100281.14	ENST00000420166.5:ENST00000418170.5:ENST00000216106.6:ENST00000455359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	24	2	1.72322	1.7865	1.84978	0.00691218	0.00102112	0.12284	0.0276375
chr2	99361147	99361243	1102792	0	+	0.333333	(0.32,0.36]	chr2	118176	1	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	34	21	2	1.63648	1.7864849999999999	1.93649	0.00286131	0.00229774	0.0657137	0.0556809
chr11	67611136	67611207	6426588	0	+	0.507042	(0.49,0.526]	chr11	579603	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000526770.5:ENST00000526169.1:ENST00000533919.5:ENST00000527355.5:ENST00000527923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	22	2	1.73543	1.786105	1.83678	0.0076655	0.00212083	0.130982	0.0532704
chr16	88006177	88006265	8477294	0	+	0.636364	(0.629,1]	chr16	792466	2	CDS	CDS:UTR3:EXON_MRNA	BANP	ENSG00000172530.21	ENST00000286122.11:ENST00000439677.5:ENST00000393208.6:ENST00000682872.1:ENST00000479780.6:ENST00000459966.5:ENST00000626016.2:ENST00000355022.8:ENST00000538234.5:ENST00000393207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	42	2	1.75706	1.785975	1.81489	0.0015762	1.26275e-4	0.0410792	0.0050163
chr15	76705902	76705984	8245825	0	-	0.439024	(0.424,0.459]	chr15	765643	1	CDS	CDS:UTR3:EXON_MRNA	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000564590.5:ENST00000565507.5:ENST00000565970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	28	2	1.77497	1.785445	1.79592	8.46973e-4	6.84186e-4	0.0245129	0.020833
chr16	2048615	2048715	8301550	0	+	0.49	(0.459,0.49]	chr16	772285	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TSC2	ENSG00000103197.18	ENST00000645591.1:ENST00000643946.1:ENST00000643088.1:ENST00000644665.1:ENST00000382538.10:ENST00000644135.1:ENST00000219476.9:ENST00000643745.1:ENST00000643149.1:ENST00000461648.3:ENST00000642936.1:ENST00000401874.7:ENST00000644335.1:ENST00000644222.1:ENST00000646388.1:ENST00000643298.1:ENST00000439673.6:ENST00000350773.9:ENST00000642206.1:ENST00000439117.6:ENST00000644329.1:ENST00000642812.1:ENST00000642797.1:ENST00000644043.1:ENST00000642561.1:ENST00000568454.6:ENST00000644399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	17	2	1.74537	1.784725	1.82408	0.0121832	0.00689809	0.194706	0.120398
chr17	4554018	4554093	8852177	0	-	0.546667	(0.526,0.57]	chr17	845854	1	CDS	CDS:EXON_MRNA	MYBBP1A	ENSG00000132382.15	ENST00000381556.6:ENST00000573116.5:ENST00000254718.9:ENST00000570986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	22	2	1.51378	1.783935	2.05409	0.00779959	0.00236757	0.131211	0.0572654
chr11	9440454	9440523	6313607	0	+	0.42029	(0.392,0.424]	chr11	566642	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	122	89	2	1.40258	1.777565	2.15255	3.35147e-6	1e-12	2.0905e-4	1.72912e-10
chr3	169992778	169992870	2075566	0	+	0.48913	(0.459,0.49]	chr3	205847	3	CDS	CDS:EXON_MRNA	SEC62	ENSG00000008952.17	ENST00000337002.9:ENST00000480708.5	protein_coding	protein_coding	protein_coding	protein_coding	45	45	2	1.57155	1.77736	1.98317	2.02382e-4	8.74289e-6	0.00757259	4.89814e-4
chr17	41987818	41987893	8930698	0	-	0.413333	(0.392,0.424]	chr17	857576	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1:ENST00000589810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	18	2	1.58975	1.776035	1.96232	0.0101397	0.00309636	0.170122	0.0702837
chr2	10589290	10589364	1378615	0	-	0.459459	(0.459,0.49]	chr2	142756	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000695465.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695474.1:ENST00000695476.1:ENST00000695477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	26	2	1.54414	1.774365	2.00459	0.00776042	2.56286e-4	0.13646	0.00911512
chr22	42776603	42776702	10049575	0	-	0.393939	(0.392,0.424]	chr22	1002221	3	EXON_PSEUDO	EXON_PSEUDO	RPL5P34	ENSG00000234009.1	ENST00000426545.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	21	16	2	1.71765	1.77287	1.82809	0.0115177	0.00698163	0.184943	0.121728
chr5	69320440	69320540	3497488	0	-	0.49	(0.459,0.49]	chr5	320095	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC125	ENSG00000183323.13	ENST00000396496.7:ENST00000396499.5:ENST00000460090.5:ENST00000383374.6:ENST00000511257.1:ENST00000512045.5:ENST00000513172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	20	2	1.54414	1.77143	1.99872	0.00776042	0.00407279	0.13646	0.0824335
chr7	102567947	102568026	4793340	0	-	0.759494	(0.629,1]	chr7	430378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	42	81	2	1.59385	1.77138	1.94891	1.39435e-5	1.6651e-7	7.31953e-4	1.37361e-5
chr5	178204608	178204684	3404332	0	+	0.697368	(0.629,1]	chr5	312626	2	UTR5	UTR5:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	33	64	2	1.68872	1.7703449999999998	1.85197	2.27192e-5	1.60433e-5	0.00113355	8.30929e-4
chr1	244864108	244864207	910910	0	-	0.737374	(0.629,1]	chr1	100874	6	CDS	CDS:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000638952.1:ENST00000283179.14:ENST00000476241.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	60	2	1.67847	1.7686099999999998	1.85875	5.59588e-5	2.00312e-5	0.00253941	0.00101437
chr4	82427246	82427304	2932279	0	-	0.396552	(0.392,0.424]	chr4	275788	2	CDS	CDS:UTR3:EXON_MRNA	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1:ENST00000514511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	47	36	2	1.42771	1.7643749999999998	2.10104	0.00490689	1.33448e-6	0.0964485	9.08388e-5
chr4	1935143	1935202	2545255	0	+	0.372881	(0.36,0.392]	chr4	244599	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	230	151	2	1.59006	1.76421	1.93836	1.62476e-11	1e-12	2.45829e-9	1.72912e-10
chr1	45614095	45614181	136889	0	+	0.406977	(0.392,0.424]	chr1	16801	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	72	55	2	1.22821	1.76262	2.29703	0.00280622	1.76142e-10	0.0662445	2.29985e-8
chr6	165779824	165779924	4268538	0	-	0.56	(0.526,0.57]	chr6	386883	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	35	2	1.42704	1.75568	2.08432	0.00619564	1.30825e-5	0.113387	6.881e-4
chr14	30936559	30936624	7792808	0	-	0.415385	(0.392,0.424]	chr14	717552	2	CDS	CDS:EXON_MRNA	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000556577.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	58	42	2	1.75049	1.75329	1.75609	1.60091e-4	1.28085e-5	0.0061196	6.7402e-4
chr15	50592447	50592536	8165106	0	-	0.438202	(0.424,0.459]	chr15	757039	7	CDS	CDS:EXON_MRNA	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	37	30	2	1.65386	1.753155	1.85245	8.94268e-4	4.57597e-4	0.0257022	0.0150584
chr16	30305789	30305871	8544703	0	-	0.487805	(0.459,0.49]	chr16	804238	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	27	27	2	1.3832	1.75271	2.12222	0.010432	1.44852e-4	0.170384	0.00564049
chr16	29994186	29994280	8543383	0	-	0.56383	(0.526,0.57]	chr16	803810	4	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HIRIP3	ENSG00000149929.16	ENST00000279392.8:ENST00000564026.1:ENST00000563053.1:ENST00000563680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	26	2	1.58248	1.7519300000000002	1.92138	0.0108533	3.31098e-4	0.176968	0.0113051
chr2	231708515	231708610	1334402	0	+	0.663158	(0.629,1]	chr2	138029	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PTMA	ENSG00000187514.17	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000468027.5:ENST00000409683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	65	2	1.73496	1.750475	1.76599	2.17403e-5	1.59526e-5	0.0010858	8.26629e-4
chr19	13765029	13765109	9294561	0	+	0.75	(0.629,1]	chr19	898785	3	CDS	CDS:EXON_MRNA	MRI1	ENSG00000037757.14	ENST00000040663.8:ENST00000319545.12:ENST00000588526.5:ENST00000591688.5:ENST00000593245.5:ENST00000589290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	75	141	2	1.68778	1.7477800000000001	1.80778	1.35365e-9	2.57579e-10	1.57765e-7	3.27706e-8
chr1	214390987	214391045	855393	0	-	0.603448	(0.57,0.629]	chr1	95294	1	CDS	CDS:UTR3:EXON_MRNA	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	56	72	2	1.36933	1.74721	2.12509	1.00493e-4	1.08737e-8	0.00417314	1.10072e-6
chr21	25982343	25982410	9845862	0	-	0.522388	(0.49,0.526]	chr21	977270	1	CDS	CDS:EXON_MRNA	APP	ENSG00000142192.21	ENST00000357903.7:ENST00000346798.8:ENST00000348990.9:ENST00000354192.7:ENST00000359726.7:ENST00000440126.7:ENST00000439274.6:ENST00000358918.7:ENST00000448850.5:ENST00000415997.1	protein_coding	protein_coding	protein_coding	protein_coding	41	46	2	1.54444	1.7430400000000001	1.94164	8.41321e-4	2.66695e-6	0.0243873	1.66834e-4
chr10	68982542	68982627	5874938	0	+	0.552941	(0.526,0.57]	chr10	527186	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.14	ENST00000685106.1:ENST00000684824.1:ENST00000354185.9:ENST00000686528.1:ENST00000690650.1:ENST00000690316.1:ENST00000620315.2:ENST00000685513.1:ENST00000688593.1:ENST00000692943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	42	2	1.31788	1.7406700000000002	2.16346	0.00442587	1.49053e-6	0.0894765	1.01e-4
chr20	63661849	63661943	9687339	0	+	0.531915	(0.526,0.57]	chr20	957637	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RTEL1	ENSG00000258366.11	ENST00000370018.7:ENST00000684971.1:ENST00000692658.1:ENST00000360203.11:ENST00000508582.7:ENST00000686756.1:ENST00000318100.9:ENST00000482936.6:ENST00000356810.5:ENST00000488316.1:ENST00000692911.1:ENST00000687123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	35	2	1.61382	1.7392400000000001	1.86466	0.00108132	1.75826e-4	0.0289989	0.00679708
chr9	136863367	136863448	5768753	0	-	0.555556	(0.526,0.57]	chr9	518862	2	CDS	CDS:EXON_MRNA	EDF1	ENSG00000107223.13	ENST00000224073.6:ENST00000371649.5:ENST00000371648.4	protein_coding	protein_coding	protein_coding	protein_coding	42	48	2	1.54409	1.7389700000000001	1.93385	7.70009e-4	1.71675e-6	0.0227656	1.14125e-4
chr5	138170831	138170912	3614111	0	-	0.45679	(0.424,0.459]	chr5	328108	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000453824.1:ENST00000471892.6:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	40	34	2	1.39368	1.7389199999999998	2.08416	0.00896333	2.94315e-6	0.147787	1.8178e-4
chr12	883394	883481	6787968	0	+	0.367816	(0.36,0.392]	chr12	619997	1	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1:ENST00000545055.1:ENST00000534872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	18	2	1.72974	1.7368299999999999	1.74392	0.00587236	0.00584854	0.108566	0.107768
chr17	75667372	75667472	8801792	0	+	0.59	(0.57,0.629]	chr17	838037	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000584861.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	27	2	1.62486	1.73598	1.8471	0.00590836	9.82396e-4	0.109519	0.0276375
chr17	40161831	40161911	8713847	0	+	0.5	(0.49,0.526]	chr17	826357	2	CDS	CDS:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1:ENST00000474190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	98	106	2	1.72264	1.734	1.74536	2.05235e-8	3.74854e-10	1.9718e-6	4.68261e-8
chr8	41612844	41612902	4975205	0	+	0.586207	(0.57,0.629]	chr8	446190	1	CDS	CDS:EXON_MRNA	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000519921.5:ENST00000523906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	43	2	1.38306	1.73268	2.0823	0.00436391	2.62833e-6	0.0875511	1.64482e-4
chr16	74305512	74305572	8432239	0	+	0.583333	(0.57,0.629]	chr16	790292	1	CDS	CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	29	2	1.67623	1.731165	1.7861	0.00258602	0.00131206	0.0621431	0.0350189
chr1	1652438	1652502	493501	0	-	0.4375	(0.424,0.459]	chr1	52745	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CDK11B	ENSG00000248333.9	ENST00000341832.11:ENST00000407249.7:ENST00000340677.9:ENST00000611150.3:ENST00000615951.4:ENST00000626918.2:ENST00000629289.2:ENST00000629312.2:ENST00000341028.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	49	40	2	1.43268	1.7296	2.02652	0.00177201	2.84339e-6	0.0444668	1.76295e-4
chr3	185931673	185931771	2512865	0	-	0.346939	(0.32,0.36]	chr3	240625	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRA2B	ENSG00000136527.19	ENST00000453386.7:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000471134.1:ENST00000480461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	264	157	2	1.59936	1.72634	1.85332	5.60096e-12	1e-12	8.88459e-10	1.72912e-10
chr7	151355767	151355858	4582862	0	+	0.450549	(0.424,0.459]	chr7	413236	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000468404.5:ENST00000568733.6:ENST00000470229.6:ENST00000470316.5:ENST00000483358.5:ENST00000493588.5:ENST00000480907.5:ENST00000477666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	36	2	1.31759	1.72533	2.13307	0.00236467	1.92313e-5	0.0572252	9.75522e-4
chr10	118336315	118336415	6270765	0	-	0.49	(0.459,0.49]	chr10	560919	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	FAM204A	ENSG00000165669.14	ENST00000369183.9:ENST00000470476.5:ENST00000469758.5:ENST00000369172.8:ENST00000369170.4:ENST00000490048.1:ENST00000487269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	45	2	1.72112	1.724665	1.72821	2.01391e-4	2.0415e-5	0.00755335	0.00103061
chr17	16146461	16146548	8882895	0	-	0.413793	(0.392,0.424]	chr17	850024	2	CDS	CDS:UTR3:EXON_MRNA	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	88	62	2	1.63559	1.723325	1.81106	3.01218e-6	5.48068e-7	1.85687e-4	4.04963e-5
chr16	89733301	89733356	8483020	0	+	0.418182	(0.392,0.424]	chr16	793300	1	CDS	CDS:UTR3:EXON_MRNA	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1:ENST00000564004.5:ENST00000569582.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	120	84	2	1.52738	1.721185	1.91499	5.80373e-7	6.87326e-10	4.25222e-5	8.29847e-8
chr7	99572244	99572339	4489054	0	+	0.4	(0.392,0.424]	chr7	403554	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZNF655	ENSG00000197343.11	ENST00000412636.5:ENST00000252713.9:ENST00000425063.5:ENST00000493277.5:ENST00000422164.5:ENST00000427931.5:ENST00000422647.5:ENST00000424881.5:ENST00000394163.2:ENST00000494357.1:ENST00000419215.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	34	2	1.50425	1.720525	1.9368	0.00101107	6.93282e-5	0.0276375	0.00300945
chr17	43288353	43288453	8938345	0	-	0.59	(0.57,0.629]	chr17	859071	582	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	38	47	2	1.22296	1.7200900000000001	2.21722	0.00305855	2.06381e-6	0.0697855	1.34439e-4
chr18	50284779	50284839	9228957	0	-	0.65	(0.629,1]	chr18	888778	2	CDS	CDS:EXON_MRNA	CXXC1	ENSG00000154832.16	ENST00000412036.6:ENST00000285106.11:ENST00000589940.5:ENST00000590901.5:ENST00000589548.6:ENST00000673786.1:ENST00000590234.5:ENST00000591190.5:ENST00000591474.5:ENST00000592078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	89	2	1.56469	1.71789	1.87109	6.92878e-6	1.08372e-7	4.02166e-4	9.091e-6
chr15	89595465	89595538	8076767	0	+	0.520548	(0.49,0.526]	chr15	746717	2	CDS	CDS:EXON_MRNA	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	43	47	2	1.58266	1.71769	1.85272	3.19618e-4	1.0278e-5	0.0111927	5.72695e-4
chr6	26158359	26158450	3748156	0	+	0.593407	(0.57,0.629]	chr6	339577	2	CDS	CDS:EXON_MRNA	H2BC5	ENSG00000158373.9	ENST00000377777.6:ENST00000289316.2	protein_coding	protein_coding	protein_coding	protein_coding	28	37	2	1.49101	1.71196	1.93291	0.00451187	3.74267e-5	0.0875511	0.00179352
chr22	42575930	42576028	10048087	0	-	0.612245	(0.57,0.629]	chr22	1002014	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RRP7BP	ENSG00000182841.13	ENST00000357802.7:ENST00000566851.6:ENST00000692200.1:ENST00000692308.1:ENST00000437211.5:ENST00000458605.6:ENST00000690158.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	37	47	2	1.58414	1.711385	1.83863	1.42424e-4	8.3062e-5	0.00569484	0.00353612
chr1	207331107	207331201	416922	0	+	0.382979	(0.36,0.392]	chr1	44998	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000695829.1:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	325	204	2	1.49231	1.71121	1.93011	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	24585806	24585906	6082417	0	-	0.42	(0.392,0.424]	chr10	545194	14	CDS	CDS:UTR3:EXON_MRNA	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	98	68	2	1.39153	1.710795	2.03006	3.72497e-5	3.11922e-9	0.00178531	3.43891e-7
chr1	633732	633831	41	0	+	0.484848	(0.459,0.49]	chr1	5	3	EXON_PSEUDO	EXON_PSEUDO	MTATP8P1:MTATP6P1	ENSG00000240409.1:ENSG00000248527.1	ENST00000467115.1:ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	21	21	2	1.61502	1.710365	1.80571	0.012151	0.00218001	0.194298	0.0534107
chr14	23059398	23059474	7777156	0	-	0.592105	(0.57,0.629]	chr14	715950	3	CDS	CDS:UTR3:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	201	253	2	1.68623	1.70969	1.73315	1e-12	1e-12	1.73382e-10	1.72912e-10
chr22	38871479	38871546	10039005	0	-	0.567164	(0.526,0.57]	chr22	1000889	1	CDS	CDS:EXON_MRNA	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	48	2	1.60135	1.705415	1.80948	1.33488e-4	2.56279e-5	0.00528171	0.00126098
chr1	52465069	52465121	618387	0	-	0.423077	(0.392,0.424]	chr1	68893	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000371541.5:ENST00000481133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	32	23	2	1.56351	1.70485	1.84619	0.00806477	7.03797e-4	0.135511	0.0214039
chr12	132795942	132796033	7325839	0	-	0.593407	(0.57,0.629]	chr12	677171	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	33	2	1.2996	1.70263	2.10566	0.00924302	8.79322e-5	0.160392	0.00373811
chr7	111453360	111453460	4818240	0	-	0.45	(0.424,0.459]	chr7	431941	606	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	39	30	2	1.56427	1.70198	1.83969	0.00145038	5.50339e-4	0.0377515	0.0174924
chr16	2268056	2268141	8493381	0	-	0.705882	(0.629,1]	chr16	795816	1	UTR5	UTR5:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000566458.5:ENST00000320225.10:ENST00000561718.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000564311.5:ENST00000570051.5:ENST00000562690.5:ENST00000564822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	35	2	1.52243	1.70028	1.87813	0.0107621	2.11373e-4	0.175562	0.00780521
chr19	55093015	55093076	9539822	0	-	0.672131	(0.629,1]	chr19	943869	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8:ENST00000435544.6:ENST00000592993.1:ENST00000592754.5:ENST00000588277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	40	2	1.2213	1.69997	2.17864	0.0112564	4.49412e-5	0.180857	0.00207016
chr2	101004157	101004190	1105223	0	+	0.606061	(0.57,0.629]	chr2	118466	1	CDS	CDS:EXON_MRNA	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	41	2	1.63549	1.6988850000000002	1.76228	6.18432e-4	1.59813e-4	0.0191195	0.00611091
chr6	165919202	165919301	4269942	0	-	0.494949	(0.49,0.526]	chr6	386931	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000649362.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	25	2	1.62659	1.6982599999999999	1.76993	0.00331983	0.00298583	0.0724801	0.0683104
chr17	58006434	58006527	8970268	0	-	0.612903	(0.57,0.629]	chr17	863516	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF1	ENSG00000136450.13	ENST00000258962.5:ENST00000582730.6:ENST00000581979.5:ENST00000584773.5:ENST00000585096.1:ENST00000583741.1:ENST00000578430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	55	70	2	1.56258	1.6976900000000001	1.8328	3.76625e-5	1.78112e-7	0.00177856	1.44115e-5
chr17	43240060	43240160	8937862	0	-	0.54	(0.526,0.57]	chr17	859071	99	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2135	2265	2	1.6673	1.697505	1.72771	1e-12	1e-12	1.73382e-10	1.72912e-10
chr2	97659351	97659414	1517553	0	-	0.555556	(0.526,0.57]	chr2	158135	1	CDS	CDS:EXON_MRNA	ACTR1B	ENSG00000115073.8	ENST00000289228.7:ENST00000451664.1:ENST00000460427.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	29	2	1.38378	1.695655	2.00753	0.0117978	1.4111e-4	0.189121	0.00555969
chr13	106559657	106559757	7563117	0	-	0.26	[0,0.32]	chr13	695632	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARGLU1	ENSG00000134884.15	ENST00000400198.8:ENST00000472226.2:ENST00000375926.5:ENST00000360629.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	84	46	2	1.42964	1.695365	1.96109	1.86536e-4	2.41829e-6	0.00708765	1.53938e-4
chr1	235213768	235213854	890732	0	-	0.406977	(0.392,0.424]	chr1	99221	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000444620.2:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	25	2	1.56351	1.69465	1.82579	0.00806477	3.24422e-4	0.135511	0.0113387
chr8	132817476	132817545	5093627	0	+	0.478261	(0.459,0.49]	chr8	455717	3	CDS	CDS:UTR3:EXON_MRNA	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395386.7:ENST00000315808.14:ENST00000395390.6:ENST00000486199.5:ENST00000469979.6:ENST00000522253.1:ENST00000460236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	23	2	1.41319	1.692845	1.9725	0.00700344	0.00278987	0.12393	0.064521
chr6	30670870	30670952	4033798	0	-	0.573171	(0.57,0.629]	chr6	365358	2	CDS	CDS:EXON_MRNA	DHX16	ENSG00000204560.10	ENST00000376442.8:ENST00000415603.1	protein_coding	protein_coding	protein_coding	protein_coding	45	57	2	1.66301	1.690015	1.71702	5.54445e-5	1.19648e-5	0.00251749	6.56382e-4
chr1	51840359	51840459	616797	0	-	0.39	(0.36,0.392]	chr1	68630	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000491410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	128	80	2	1.61162	1.68838	1.76514	6.50178e-7	3.57653e-9	4.72567e-5	3.89471e-7
chr16	1964448	1964525	8492223	0	-	0.805195	(0.629,1]	chr16	795434	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000529806.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	57	102	2	1.47786	1.685795	1.89373	2.82205e-6	1.87775e-8	1.75466e-4	1.82047e-6
chr17	43251958	43252058	8937981	0	-	0.52	(0.49,0.526]	chr17	859071	218	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2523	2609	2	1.66527	1.6843949999999999	1.70352	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	19188114	19188214	8669551	0	+	0.56	(0.526,0.57]	chr17	820295	2	EXON_SMALL	EXON_SMALL	SNORD3A	ENSG00000263934.5	ENST00000584923.1	snoRNA	snoRNA	snoRNA	snoRNA	280	295	2	1.63872	1.684015	1.72931	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	3979436	3979459	9411739	0	-	0.608696	(0.57,0.629]	chr19	920610	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	27	2	1.67318	1.6835	1.69382	0.00548201	0.00168349	0.104315	0.0437868
chr1	246849902	246849998	918921	0	-	0.375	(0.36,0.392]	chr1	101077	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	36	2	1.30317	1.68268	2.06219	0.00603981	2.30359e-6	0.111846	1.49797e-4
chrM	2727	2823	10480409	0	+	0.395833	(0.392,0.424]	chrM	1038987	12	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	6264	4245	2	1.65705	1.682525	1.708	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43294552	43294652	8938407	0	-	0.48	(0.459,0.49]	chr17	859071	644	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	47	44	2	1.65037	1.68045	1.71053	2.54986e-4	4.28583e-5	0.00911512	0.00200222
chr1	32180345	32180445	97539	0	+	0.56	(0.526,0.57]	chr1	10834	1	CDS_START	CDS_START:CDS:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	19	21	2	1.58248	1.680255	1.77803	0.0108533	0.00426618	0.176968	0.0861781
chr16	22260461	22260529	8348557	0	+	0.5	(0.49,0.526]	chr16	778288	1	CDS	CDS:UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000568269.5:ENST00000563555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	39	2	1.50478	1.67999	1.8552	9.31588e-4	9.70258e-5	0.0262615	0.00401704
chr9	92258853	92258925	5661301	0	-	0.472222	(0.459,0.49]	chr9	506731	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	35	2	1.28519	1.679515	2.07384	0.00353472	7.18353e-5	0.0752172	0.00312099
chr5	71517321	71517386	3208135	0	+	0.369231	(0.36,0.392]	chr5	296055	1	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	19	2	1.6137	1.67881	1.74392	0.00589732	0.00587236	0.109339	0.107768
chr1	153772924	153773002	303051	0	+	0.551282	(0.526,0.57]	chr1	32494	1	CDS	CDS:UTR3:EXON_MRNA	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	104	109	2	1.24385	1.6785899999999998	2.11333	1.30807e-5	1e-12	6.881e-4	1.73382e-10
chr17	50744651	50744732	8741920	0	+	0.37037	(0.36,0.392]	chr17	832154	1	CDS	CDS:UTR3:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000508045.5:ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000507503.1:ENST00000511068.1:ENST00000504065.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	79	49	2	1.62522	1.67754	1.72986	2.22285e-5	1.47341e-5	0.00112982	7.85477e-4
chr10	89762736	89762835	5931767	0	+	0.474747	(0.459,0.49]	chr10	531919	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	35	34	2	1.49669	1.674985	1.85328	0.0049523	4.91159e-5	0.0964485	0.00225307
chr15	59343711	59343811	8195482	0	-	0.39	(0.36,0.392]	chr15	759880	709	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	33	2	1.64911	1.671305	1.6935	0.00116697	1.21261e-4	0.0311473	0.00488121
chr16	89883350	89883431	8483763	0	+	0.555556	(0.526,0.57]	chr16	793437	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000561585.1:ENST00000561958.5:ENST00000614813.4:ENST00000565196.5:ENST00000564652.5:ENST00000568412.5:ENST00000563406.1:ENST00000565404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	69	73	2	1.5509	1.671135	1.79137	8.26503e-6	1.97092e-7	4.66195e-4	1.58594e-5
chr6	165791527	165791623	4268657	0	-	0.510417	(0.49,0.526]	chr6	386893	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	51	53	2	1.44478	1.66929	1.8938	2.61661e-4	3.4616e-6	0.00939098	2.12935e-4
chr16	28834342	28834415	8363761	0	+	0.534247	(0.526,0.57]	chr16	779969	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATXN2L	ENSG00000168488.19	ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	28	2	1.62298	1.6631550000000002	1.70333	0.00270968	0.00175	0.0641652	0.0454541
chr17	45514362	45514461	8946965	0	-	0.373737	(0.36,0.392]	chr17	860723	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000579913.5:ENST00000581296.2:ENST00000686949.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	63	39	2	1.57461	1.661745	1.74888	4.18642e-4	3.6798e-5	0.0139275	0.00176576
chr5	16465390	16465477	3424586	0	-	0.574713	(0.57,0.629]	chr5	314962	5	CDS	CDS:EXON_MRNA	ZNF622	ENSG00000173545.5	ENST00000308683.3	protein_coding	protein_coding	protein_coding	protein_coding	20	25	2	1.4913	1.66059	1.82988	0.00714838	0.00316694	0.126395	0.0718148
chr12	45216321	45216391	6888299	0	+	0.471429	(0.459,0.49]	chr12	628180	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	20	2	1.565	1.660225	1.75545	0.0079181	0.00769986	0.139119	0.130982
chrX	1595457	1595532	10068458	0	+	0.56	(0.526,0.57]	chrX	1004836	2	CDS	CDS:EXON_MRNA	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	43	47	2	1.3761	1.659145	1.94219	0.00357406	8.52991e-7	0.0781496	6.02069e-5
chr14	102086985	102087044	7914982	0	-	0.610169	(0.57,0.629]	chr14	729715	1	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AA1	ENSG00000080824.19	ENST00000216281.13:ENST00000334701.11:ENST00000553585.5:ENST00000556554.1:ENST00000557234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	32	2	1.38219	1.6589	1.93561	0.0107802	1.42904e-4	0.175838	0.00562741
chr18	12326227	12326324	9063279	0	+	0.43299	(0.424,0.459]	chr18	875841	2	UTR3	UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	28	2	1.35903	1.6561949999999999	1.95336	0.00420137	5.6699e-4	0.0850072	0.0179821
chr4	1930697	1930770	2545210	0	+	0.561644	(0.526,0.57]	chr4	244593	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	67	72	2	1.44002	1.65577	1.87152	2.4512e-4	4.01252e-9	0.00894177	4.32847e-7
chr17	43233861	43233961	8937800	0	-	0.36	(0.32,0.36]	chr17	859071	37	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	5962	3336	2	1.62427	1.65219	1.68011	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	13382	13477	10480509	0	+	0.421053	(0.392,0.424]	chrM	1039009	12	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	69	46	2	1.46583	1.651055	1.83628	1.88666e-4	1.13503e-5	0.00716181	6.26358e-4
chr1	44777701	44777789	135914	0	+	0.625	(0.57,0.629]	chr1	16499	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000485390.5:ENST00000464658.1:ENST00000484599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	60	72	2	1.41311	1.65093	1.88875	3.33829e-5	3.93977e-7	0.00160476	2.99111e-5
chr5	140525995	140526084	3337736	0	+	0.460674	(0.459,0.49]	chr5	306391	1	CDS	CDS:UTR5:EXON_MRNA	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5	protein_coding	protein_coding	protein_coding	protein_coding	28	26	2	1.61646	1.649545	1.68263	0.00505993	0.00151366	0.0964313	0.0396903
chr1	29148957	29149046	556115	0	-	0.550562	(0.526,0.57]	chr1	61770	6	CDS	CDS:UTR3:EXON_MRNA	SRSF4	ENSG00000116350.18	ENST00000373795.7:ENST00000691479.1:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	60	61	2	1.42571	1.648745	1.87178	5.21924e-5	2.93299e-6	0.00238177	1.84529e-4
chr1	999691	999782	491057	0	-	0.593407	(0.57,0.629]	chr1	51982	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	32	2	1.24908	1.6482899999999998	2.0475	0.00602759	6.30759e-4	0.111626	0.0193151
chr19	55655008	55655104	9389071	0	+	0.708333	(0.629,1]	chr19	916397	10	UTR5	UTR5:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	31	2	1.61335	1.647335	1.68132	0.008867	0.00151778	0.146312	0.0397018
chr1	85707813	85707906	676029	0	-	0.451613	(0.424,0.459]	chr1	73541	3	CDS	CDS:EXON_MRNA	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	31	23	2	1.35213	1.64713	1.94213	0.00993635	0.00150013	0.169739	0.0389999
chr4	82359470	82359535	2932072	0	-	0.430769	(0.424,0.459]	chr4	275753	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	23	2	1.35213	1.64713	1.94213	0.00993635	0.00150013	0.169739	0.0389999
chr1	186344442	186344510	824345	0	-	0.455882	(0.424,0.459]	chr1	91587	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	50	38	2	1.63062	1.6462949999999998	1.66197	4.14214e-4	1.47232e-4	0.0137833	0.0057686
chr1	26731151	26731241	83793	0	+	0.533333	(0.526,0.57]	chr1	8867	1	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	26	28	2	1.50879	1.646055	1.78332	0.0107195	4.01099e-4	0.175212	0.0137674
chr3	128496099	128496198	1986363	0	+	0.393939	(0.392,0.424]	chr3	199783	57	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	39	27	2	1.37353	1.64571	1.91789	0.0116935	1.23543e-4	0.184357	0.00497247
chr17	4545609	4545685	8852077	0	-	0.657895	(0.629,1]	chr17	845806	1	CDS	CDS:EXON_MRNA:INTRON	MYBBP1A	ENSG00000132382.15	ENST00000381556.6:ENST00000573116.5:ENST00000254718.9:ENST00000573723.1:ENST00000571354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	36	2	1.46419	1.64388	1.82357	0.00445257	8.06504e-4	0.0875511	0.0237965
chr4	139370307	139370404	2743463	0	+	0.402062	(0.392,0.424]	chr4	260742	2	CDS	CDS:EXON_MRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	50	33	2	1.35221	1.637295	1.92238	0.00297025	8.47101e-5	0.0681834	0.00360319
chr3	157159994	157160094	2477676	0	-	0.72	(0.629,1]	chr3	237619	1	CDS_START	CDS_START:CDS:EXON_MRNA	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000479596.5:ENST00000465947.5:ENST00000295925.5:ENST00000471044.1:ENST00000466101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	117	2	1.28238	1.63558	1.98878	2.30292e-5	5.16975e-11	0.00114864	7.22349e-9
chr13	52461831	52461926	7387868	0	+	0.463158	(0.459,0.49]	chr13	682621	8	CDS	CDS:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378034.7:ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	35	32	2	1.56967	1.634925	1.70018	0.00111509	9.967e-4	0.0298134	0.0279915
chr9	113410227	113410293	5699291	0	-	0.606061	(0.57,0.629]	chr9	511394	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1:ENST00000475080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	25	2	1.53185	1.6348699999999998	1.73789	0.0089572	0.00277377	0.147694	0.0657169
chr17	45515379	45515479	8946976	0	-	0.49	(0.459,0.49]	chr17	860725	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	147	132	2	1.61516	1.633605	1.65205	2.2668e-10	9.77307e-11	2.9163e-8	1.31695e-8
chr10	110584182	110584253	5975681	0	+	0.464789	(0.459,0.49]	chr10	537030	1	CDS	CDS:EXON_MRNA	SMC3	ENSG00000108055.11	ENST00000684988.1:ENST00000691297.1:ENST00000361804.5:ENST00000691527.1:ENST00000692792.1:ENST00000687823.1:ENST00000689932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	64	58	2	1.62186	1.63304	1.64422	3.29101e-5	6.25494e-6	0.00159224	3.65228e-4
chr1	223755479	223755564	439537	0	+	0.564706	(0.526,0.57]	chr1	47391	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000480581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	28	2	1.53435	1.6326550000000002	1.73096	0.00982663	9.02095e-4	0.16817	0.0258498
chr11	2971447	2971534	6538649	0	-	0.436782	(0.424,0.459]	chr11	593830	1	CDS	CDS:EXON_MRNA:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5	protein_coding	protein_coding	protein_coding	protein_coding	279	205	2	1.49734	1.63217	1.767	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	45519321	45519419	8947016	0	-	0.428571	(0.424,0.459]	chr17	860733	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1:ENST00000661058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	214	158	2	1.56348	1.63116	1.69884	4.35929e-12	1e-12	7.01035e-10	1.73382e-10
chr7	134933438	134933529	4561188	0	+	0.428571	(0.424,0.459]	chr7	409598	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000361675.7:ENST00000430085.5:ENST00000482470.5:ENST00000361901.6:ENST00000393118.6:ENST00000443197.5:ENST00000424922.5:ENST00000495522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	99	74	2	1.54133	1.63093	1.72053	9.08486e-6	3.09608e-8	5.06972e-4	2.91141e-6
chr1	225519479	225519565	868513	0	-	0.5	(0.49,0.526]	chr1	96754	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ENAH	ENSG00000154380.19	ENST00000696609.1:ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000497899.6:ENST00000391874.2:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	54	2	1.46827	1.6280700000000001	1.78787	9.76852e-5	1.70131e-5	0.00405967	8.73554e-4
chr4	82373511	82373578	2932216	0	-	0.80597	(0.629,1]	chr4	275770	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	89	154	2	1.57501	1.6279599999999999	1.68091	5.28101e-9	1.18602e-10	5.61257e-7	1.56606e-8
chr14	35078926	35079024	7599970	0	+	0.418367	(0.392,0.424]	chr14	699379	1	CDS	CDS:UTR3:EXON_MRNA	FAM177A1	ENSG00000151327.13	ENST00000396472.5:ENST00000280987.9:ENST00000382406.7:ENST00000553955.2:ENST00000554794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	34	23	2	1.61098	1.62795	1.64492	0.0057187	0.00226634	0.106346	0.0553034
chr7	75411477	75411574	4433896	0	+	0.618557	(0.57,0.629]	chr7	398766	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	NSUN5P1	ENSG00000223705.10	ENST00000473960.1:ENST00000691741.1:ENST00000687920.1:ENST00000393633.6:ENST00000687621.1:ENST00000689022.1:ENST00000691865.1:ENST00000688076.1:ENST00000693166.1:ENST00000457988.5:ENST00000689132.1:ENST00000691132.1:ENST00000692954.1:ENST00000455158.5:ENST00000421140.6:ENST00000693244.1:ENST00000422386.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	17	21	2	1.5022200000000001	1.625765	1.74931	0.0122039	0.00847886	0.194706	0.140721
chr1	91387427	91387527	687206	0	-	0.51	(0.49,0.526]	chr1	74744	12	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1065	1055	2	1.52838	1.624345	1.72031	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	71392087	71392187	4100339	0	-	0.5	(0.49,0.526]	chr6	373565	77	INTRON	INTRON	LINC00472	ENSG00000233237.8	ENST00000651778.1:ENST00000413945.6:ENST00000436803.6:ENST00000652655.1:ENST00000650942.1:ENST00000625013.2:ENST00000652370.1:ENST00000652523.1	lncRNA	lncRNA	lncRNA	lncRNA	35	36	2	1.45407	1.6229749999999998	1.79188	0.00315571	1.20059e-4	0.0715982	0.00483527
chr19	1123586	1123639	9401444	0	-	0.641509	(0.629,1]	chr19	918657	2	CDS	CDS:EXON_MRNA	SBNO2	ENSG00000064932.16	ENST00000438103.6:ENST00000361757.8:ENST00000587024.5:ENST00000592222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	63	2	1.38646	1.621775	1.85709	6.4365e-4	4.46514e-6	0.0194527	2.68818e-4
chr11	812534	812633	6294281	0	+	0.646465	(0.629,1]	chr11	564040	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000530398.1:ENST00000526222.5:ENST00000525722.1:ENST00000527517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	56	97	2	1.58701	1.620275	1.65354	2.22876e-6	4.37981e-7	1.43671e-4	3.2867e-5
chr11	57327711	57327796	6607265	0	-	0.505882	(0.49,0.526]	chr11	601854	1	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000635721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	48	2	1.49408	1.619815	1.74555	1.81812e-4	6.63613e-5	0.00692041	0.00289964
chr11	67121233	67121316	6423209	0	+	0.457831	(0.424,0.459]	chr11	578966	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000532436.5:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	30	2	1.35903	1.6160999999999999	1.87317	0.00420137	3.42799e-4	0.0850072	0.0116953
chr3	47670657	47670717	2264564	0	-	0.5	(0.49,0.526]	chr3	218889	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	31	2	1.5254	1.61529	1.70518	0.00501441	4.74007e-4	0.0973621	0.0155817
chr12	122340846	122340941	7307617	0	-	0.421053	(0.392,0.424]	chr12	674784	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000648993.1:ENST00000540304.6:ENST00000514271.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	69	46	2	1.34118	1.61277	1.88436	0.0014011	1.37801e-6	0.0372303	9.35881e-5
chr19	14480675	14480775	9446690	0	-	0.6	(0.57,0.629]	chr19	927893	1	CDS_START	CDS_START:CDS:EXON_MRNA	GIPC1	ENSG00000123159.16	ENST00000393028.5:ENST00000345425.6:ENST00000393033.9:ENST00000586027.5:ENST00000591349.5:ENST00000589497.5:ENST00000587210.1:ENST00000587969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	58	71	2	1.1177	1.611935	2.10617	0.00263145	1.07933e-9	0.0632194	1.27136e-7
chr11	65502151	65502250	6416263	0	+	0.434343	(0.424,0.459]	chr11	577204	46	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000508832.2:ENST00000616527.4	lncRNA	lncRNA	lncRNA	lncRNA	262	192	2	1.40955	1.609855	1.81016	4.07711e-11	1e-12	5.7593e-9	1.73382e-10
chr2	210647062	210647162	1296835	0	+	0.48	(0.459,0.49]	chr2	134205	40	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10:ENST00000451903.3:ENST00000674074.1:ENST00000673698.1:ENST00000497121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	37	33	2	1.51856	1.60937	1.70018	0.00111509	9.68842e-4	0.0298134	0.027252
chr14	73109416	73109492	7697065	0	+	0.578947	(0.57,0.629]	chr14	707116	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000532483.5:ENST00000527449.1:ENST00000530978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	123	145	2	1.4764	1.60867	1.74094	6.24871e-9	6.14409e-12	6.5739e-7	9.7394e-10
chr1	228102477	228102560	877592	0	-	0.710843	(0.629,1]	chr1	97667	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C1orf35	ENSG00000143793.13	ENST00000469781.5:ENST00000272139.5:ENST00000485896.5:ENST00000472617.5:ENST00000492757.5:ENST00000465199.5:ENST00000491293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	65	2	1.21167	1.60798	2.00429	0.00542258	8.86492e-8	0.10323	7.62329e-6
chr16	28727170	28727245	8363375	0	+	0.6	(0.57,0.629]	chr16	779862	3	CDS	CDS:EXON_MRNA	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000566519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	26	2	1.38558	1.60773	1.82988	0.0082626	0.00316694	0.144981	0.0718148
chr10	32018501	32018562	6101593	0	-	0.442623	(0.424,0.459]	chr10	546842	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5:ENST00000493889.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	160	117	2	1.45106	1.60391	1.75676	7.71783e-8	6.53921e-12	6.74557e-6	1.02998e-9
chr10	119050597	119050674	6271896	0	-	0.38961	(0.36,0.392]	chr10	561040	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	258	151	2	1.57066	1.603775	1.63689	1.38558e-11	1e-12	2.11034e-9	1.72912e-10
chr2	96304704	96304786	1513650	0	-	0.560976	(0.526,0.57]	chr2	157379	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	96	96	2	1.58168	1.599705	1.61773	1.20844e-7	8.63449e-8	1.00862e-5	7.44104e-6
chr11	94831451	94831541	6470100	0	+	0.5	(0.49,0.526]	chr11	584802	1	CDS	CDS:EXON_MRNA	AMOTL1	ENSG00000166025.18	ENST00000317829.12:ENST00000433060.3	protein_coding	protein_coding	protein_coding	protein_coding	82	82	2	1.37222	1.5992549999999999	1.82629	4.72873e-5	4.68051e-9	0.00217353	4.99713e-7
chr16	89733202	89733301	8483019	0	+	0.373737	(0.36,0.392]	chr16	793299	18	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1:ENST00000564004.5:ENST00000569582.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	64	38	2	1.53442	1.5977999999999999	1.66118	6.98338e-4	7.91813e-5	0.0212418	0.00338298
chr17	7890570	7890655	8642350	0	+	0.552941	(0.526,0.57]	chr17	817437	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CHD3	ENSG00000170004.18	ENST00000380358.9:ENST00000672274.1:ENST00000672838.1:ENST00000330494.12:ENST00000358181.8:ENST00000570758.1:ENST00000574022.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	253	251	2	1.47414	1.595145	1.71615	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	49107977	49108068	9373347	0	+	0.769231	(0.629,1]	chr19	912728	3	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	90	2	1.50109	1.5937649999999999	1.68644	6.9867e-6	1.22463e-6	4.03164e-4	8.35254e-5
chr15	59174182	59174240	8193765	0	-	0.37931	(0.36,0.392]	chr15	759758	2	CDS	CDS:EXON_MRNA:INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559269.5:ENST00000560749.1	protein_coding	protein_coding	protein_coding	protein_coding	56	33	2	1.40633	1.59359	1.78085	0.00213673	1.53689e-4	0.0523675	0.00597503
chr12	9299259	9299328	6819770	0	+	0.57971	(0.57,0.629]	chr12	623553	1	EXON_PSEUDO	EXON_PSEUDO	ENSG00000111788	ENSG00000111788.10	ENST00000539757.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	24	28	2	1.29081	1.59081	1.89081	0.01203	0.00118867	0.192743	0.031619
chr16	27488316	27488415	8538146	0	-	0.585859	(0.57,0.629]	chr16	802688	2	CDS	CDS:EXON_MRNA:INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5:ENST00000569653.1:ENST00000564664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	32	2	1.55837	1.589565	1.62076	0.00353495	0.00126595	0.0774451	0.0338938
chr16	18341693	18341766	8522577	0	-	0.657534	(0.629,1]	chr16	799995	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PKD1P4	ENSG00000205746.9	ENST00000525846.6:ENST00000545152.1:ENST00000538220.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	65	110	2	1.29618	1.58773	1.87928	3.14113e-5	1.15175e-9	0.00151428	1.34326e-7
chr19	13105486	13105546	9444331	0	-	0.733333	(0.629,1]	chr19	927308	1	CDS	CDS:EXON_MRNA	TRMT1	ENSG00000104907.13	ENST00000437766.5:ENST00000592062.5:ENST00000357720.9:ENST00000593157.5:ENST00000221504.12:ENST00000588511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	58	96	2	1.37531	1.58731	1.79931	5.5345e-6	6.79777e-7	3.24515e-4	4.90459e-5
chr9	137728464	137728564	5531173	0	+	0.52	(0.49,0.526]	chr9	498219	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	68	67	2	1.57056	1.5859999999999999	1.60144	1.71728e-5	3.61267e-6	8.81625e-4	2.20635e-4
chr15	88512350	88512450	8270200	0	-	0.48	(0.459,0.49]	chr15	767837	1	UTR3	UTR3:EXON_MRNA	DET1	ENSG00000140543.15	ENST00000557842.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	29	26	2	1.38367	1.584325	1.78498	0.0110505	9.81165e-4	0.180414	0.0275649
chr1	999432	999525	491054	0	-	0.806452	(0.629,1]	chr1	51979	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HES4	ENSG00000188290.11	ENST00000428771.6:ENST00000304952.11:ENST00000481869.1:ENST00000484667.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	33	2	1.53992	1.584165	1.62841	0.00869478	0.00146447	0.144028	0.0384758
chr9	128180720	128180814	5744660	0	-	0.574468	(0.57,0.629]	chr9	515084	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIZ1	ENSG00000148337.22	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000476239.5:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	65	2	1.57946	1.57949	1.57952	5.69316e-5	6.49727e-6	0.00259364	3.78828e-4
chr12	103931539	103931639	7001125	0	+	0.41	(0.392,0.424]	chr12	639877	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000548622.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	240	152	2	1.41476	1.5778699999999999	1.74098	4.35582e-10	1e-12	5.38102e-8	1.72912e-10
chr18	670691	670779	9037833	0	+	0.568182	(0.526,0.57]	chr18	873870	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	30	2	1.43306	1.576935	1.72081	0.00427796	0.00125346	0.0865189	0.0331534
chr1	67429987	67430058	646170	0	-	0.619718	(0.57,0.629]	chr1	71820	1	CDS	CDS:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	101	116	2	1.5686	1.570725	1.57285	3.42091e-8	1.31279e-8	3.19904e-6	1.30585e-6
chrX	40063693	40063779	10323868	0	-	0.581395	(0.57,0.629]	chrX	1025082	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	55	2	1.31487	1.56982	1.82477	3.83307e-4	2.25528e-5	0.0132656	0.00112544
chr10	120906303	120906398	6003525	0	+	0.568421	(0.526,0.57]	chr10	538995	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR11	ENSG00000120008.16	ENST00000263461.11:ENST00000605543.5:ENST00000497136.6:ENST00000604509.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	55	55	2	1.36898	1.569095	1.76921	8.50591e-4	2.04093e-6	0.0245129	1.33134e-4
chr11	27405298	27405398	6583840	0	-	0.51	(0.49,0.526]	chr11	598926	124	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	27	26	2	1.37499	1.56312	1.75125	0.0061586	0.00457949	0.114	0.0886863
chr1	1719391	1719455	494112	0	-	0.421875	(0.392,0.424]	chr1	52885	2	CDS	CDS:EXON_MRNA	CDK11A	ENSG00000008128.23	ENST00000404249.8:ENST00000356200.7:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1:ENST00000498810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	48	30	2	1.2093	1.5580850000000002	1.90687	0.0100472	1.46146e-4	0.170122	0.00564049
chr3	120093434	120093526	2402608	0	-	0.423913	(0.392,0.424]	chr3	230186	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000676743.1:ENST00000677338.1:ENST00000677903.1:ENST00000677423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	30	2	1.47399	1.55783	1.64167	0.00289219	6.53134e-4	0.0664815	0.0197042
chr12	76059827	76059878	7212515	0	-	0.294118	[0,0.32]	chr12	665385	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	231	116	2	1.33157	1.557065	1.78256	1.48463e-7	2.05624e-12	1.22686e-5	3.44498e-10
chr8	115603966	115604060	5252343	0	-	0.468085	(0.459,0.49]	chr8	469493	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TRPS1	ENSG00000104447.13	ENST00000395715.8:ENST00000640765.1:ENST00000220888.9:ENST00000519076.5:ENST00000520276.5:ENST00000519674.1:ENST00000517323.2	protein_coding	protein_coding	protein_coding	protein_coding	50	43	2	1.53116	1.55551	1.57986	4.04923e-4	1.97757e-4	0.0135138	0.00746609
chrX	53399659	53399730	10345479	0	-	0.422535	(0.392,0.424]	chrX	1027376	2	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	49	31	2	1.54962	1.5511599999999999	1.5527	0.00151945	9.93745e-4	0.0389999	0.027911
chr15	34199665	34199752	8124469	0	-	0.528736	(0.526,0.57]	chr15	751502	2	UTR5	UTR5:EXON_MRNA:INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	22	2	1.50879	1.54873	1.58867	0.0107195	0.00764291	0.175212	0.134851
chr1	36178920	36178972	108523	0	+	0.692308	(0.629,1]	chr1	12422	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000487131.3:ENST00000373148.5:ENST00000532131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	37	2	1.51304	1.54767	1.5823	0.00459527	0.00140137	0.0889863	0.0372344
chr2	61179075	61179171	1044931	0	+	0.510417	(0.49,0.526]	chr2	111685	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	AHSA2P	ENSG00000173209.23	ENST00000357022.6:ENST00000463681.1:ENST00000394457.7:ENST00000489653.6:ENST00000642732.1:ENST00000643913.1:ENST00000647519.1:ENST00000642505.1:ENST00000471542.5:ENST00000493310.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	183	173	2	1.53944	1.547375	1.55531	2.15979e-11	2.0498e-12	3.15729e-9	3.40881e-10
chr1	62444934	62445033	173276	0	+	0.333333	(0.32,0.36]	chr1	19636	3	CDS	CDS:EXON_MRNA	USP1	ENSG00000162607.13	ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	52	27	2	1.33278	1.546785	1.76079	0.00491944	9.3486e-4	0.0964485	0.0266969
chr7	72948619	72948713	4729094	0	-	0.595745	(0.57,0.629]	chr7	423967	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN5P2	ENSG00000106133.18	ENST00000602348.5:ENST00000444583.6:ENST00000388955.8:ENST00000485741.6:ENST00000457352.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	68	77	2	1.27902	1.54478	1.81054	1.41764e-4	1.15369e-7	0.005584	9.75934e-6
chr18	54164522	54164611	9229580	0	-	0.460674	(0.459,0.49]	chr18	888841	1	CDS	CDS:UTR3:EXON_MRNA	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000578272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	83	70	2	1.43143	1.54077	1.65011	1.64546e-5	1.97241e-6	8.48507e-4	1.29191e-4
chr1	180988291	180988345	816670	0	-	0.574074	(0.57,0.629]	chr1	90694	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STX6	ENSG00000135823.14	ENST00000542060.5:ENST00000258301.6:ENST00000469135.1:ENST00000496476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	41	2	1.46016	1.54046	1.62076	0.00353495	2.033e-4	0.0774451	0.00760607
chr12	31084968	31085047	6863411	0	+	0.594937	(0.57,0.629]	chr12	626691	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX11	ENSG00000013573.17	ENST00000542838.6:ENST00000228264.10:ENST00000542129.5:ENST00000438391.6:ENST00000435753.6:ENST00000540935.5:ENST00000539049.5:ENST00000536265.5:ENST00000415475.6:ENST00000545668.5:ENST00000350437.8:ENST00000535158.5:ENST00000543756.5:ENST00000542244.5:ENST00000544652.1:ENST00000538345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	38	2	1.29923	1.53847	1.77771	0.00643016	1.41964e-4	0.114061	0.00568684
chr6	52273828	52273916	4083095	0	-	0.454545	(0.424,0.459]	chr6	371979	2	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	53	37	2	1.36367	1.53573	1.70779	0.00181172	1.79811e-4	0.0469284	0.00685187
chr1	24660718	24660799	76879	0	+	0.419753	(0.392,0.424]	chr1	7877	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	101	64	2	1.10385	1.53451	1.96517	0.00193044	2.29677e-9	0.0476564	2.57518e-7
chr17	43284253	43284353	8938304	0	-	0.49	(0.459,0.49]	chr17	859071	541	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3918	3258	2	1.50862	1.5339550000000002	1.55929	1e-12	1e-12	1.73382e-10	1.72912e-10
chr19	55092621	55092662	9539813	0	-	0.756098	(0.629,1]	chr19	943860	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	61	99	2	1.5125	1.53113	1.54976	4.00053e-6	9.76402e-7	2.41015e-4	6.86316e-5
chr16	89729249	89729318	8482978	0	+	0.449275	(0.424,0.459]	chr16	793295	1	CDS	CDS:UTR3:EXON_MRNA	ZNF276	ENSG00000158805.12	ENST00000562530.5:ENST00000289816.9:ENST00000568064.5:ENST00000563983.5:ENST00000443381.7:ENST00000568295.5:ENST00000561536.5:ENST00000563541.1:ENST00000569426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	65	46	2	1.26481	1.5285549999999999	1.7923	0.00251337	4.59326e-6	0.0603159	2.71676e-4
chrX	47240595	47240648	10123979	0	+	0.566038	(0.526,0.57]	chrX	1009504	1	CDS_START	CDS_START:CDS:EXON_MRNA	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000377107.7:ENST00000469080.5:ENST00000377080.7:ENST00000377078.2:ENST00000489111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	71	68	2	1.38025	1.5258500000000002	1.67145	1.00658e-4	1.30602e-6	0.00417945	8.90844e-5
chr16	28954623	28954682	8364439	0	+	0.40678	(0.392,0.424]	chr16	780186	2	CDS	CDS:EXON_MRNA:INTRON	NFATC2IP	ENSG00000176953.13	ENST00000564978.5:ENST00000320805.9:ENST00000562977.1:ENST00000568998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	78	48	2	1.5027	1.520495	1.53829	1.07551e-4	8.41532e-5	0.00442392	0.00358206
chr11	10799756	10799839	6564316	0	-	0.421687	(0.392,0.424]	chr11	596803	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000528839.1:ENST00000534272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	36	22	2	1.37564	1.516675	1.65771	0.00828555	0.00575516	0.145308	0.105865
chr14	73099379	73099433	7696953	0	+	0.481481	(0.459,0.49]	chr14	707085	1	CDS	CDS:UTR3:EXON_MRNA	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5:ENST00000532192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	75	63	2	1.39789	1.5163950000000002	1.6349	2.02702e-4	1.37093e-6	0.00749712	9.28154e-5
chr22	39314765	39314846	10039606	0	-	0.641975	(0.629,1]	chr22	1001005	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000467105.1:ENST00000402527.5:ENST00000481985.5:ENST00000471290.1:ENST00000453303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	29	46	2	1.22068	1.51614	1.8116	0.00464365	2.21341e-4	0.0936439	0.00811202
chrX	48985267	48985334	10340192	0	-	0.567164	(0.526,0.57]	chrX	1026632	1	CDS	CDS:EXON_MRNA	GRIPAP1	ENSG00000068400.13	ENST00000619149.4:ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	40	2	1.34935	1.5131450000000002	1.67694	0.00231187	2.0814e-4	0.0560023	0.00769157
chr19	35613753	35613792	9331350	0	+	0.538462	(0.526,0.57]	chr19	905131	1	CDS	CDS:UTR3:EXON_MRNA	HAUS5	ENSG00000249115.9	ENST00000203166.10:ENST00000587439.5:ENST00000585968.5:ENST00000588570.5:ENST00000424522.5:ENST00000592291.5:ENST00000428854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	34	2	1.15078	1.50772	1.86466	0.0128232	1.75826e-4	0.195506	0.00679708
chrM	7781	7878	10480454	0	+	0.536082	(0.526,0.57]	chrM	1038993	2	CDS	CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	238	222	2	1.48774	1.506615	1.52549	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	156312040	156312130	780951	0	-	0.511111	(0.49,0.526]	chr1	86643	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	30	2	1.38248	1.506015	1.62955	0.00524494	0.00188042	0.0994441	0.0466028
chr12	103946867	103946949	7001306	0	+	0.390244	(0.36,0.392]	chr12	639941	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	572	311	2	1.43953	1.500855	1.56218	1e-12	1e-12	1.73382e-10	1.72912e-10
chr17	43290452	43290552	8938366	0	-	0.63	(0.629,1]	chr17	859071	603	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1079	1686	2	1.44871	1.49838	1.54805	1e-12	1e-12	1.73382e-10	1.72912e-10
chr3	168032685	168032768	2482870	0	-	0.53012	(0.526,0.57]	chr3	238195	3	CDS	CDS:EXON_MRNA	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	58	54	2	1.31461	1.4975	1.68039	3.92795e-4	3.39778e-5	0.0132061	0.00163311
chr19	19004358	19004454	9459634	0	-	0.697917	(0.629,1]	chr19	930478	3	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	31	2	1.42747	1.496745	1.56602	0.00810595	0.00550532	0.13618	0.102615
chr17	43300151	43300251	8938463	0	-	0.49	(0.459,0.49]	chr17	859071	700	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	4055	3280	2	1.47128	1.4944199999999999	1.51756	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	32395231	32395304	3432237	0	-	0.315068	[0,0.32]	chr5	315721	2	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	249	120	2	1.2349	1.49321	1.75152	7.76152e-7	1e-12	5.49763e-5	1.73382e-10
chrX	15799871	15799953	10087586	0	+	0.414634	(0.392,0.424]	chrX	1006288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZRSR2	ENSG00000169249.14	ENST00000690252.1:ENST00000691502.1:ENST00000380308.7:ENST00000307771.8:ENST00000468028.1:ENST00000684799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	83	50	2	1.34192	1.491705	1.64149	4.02051e-4	1.63967e-5	0.0134732	8.48507e-4
chrM	14746	14846	10480517	0	+	0.44	(0.424,0.459]	chrM	1039011	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	82	55	2	1.25644	1.491595	1.72675	3.65964e-4	6.8108e-6	0.0124033	3.95746e-4
chr12	120496336	120496421	7032833	0	+	0.717647	(0.629,1]	chr12	644233	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000549649.5:ENST00000548342.5:ENST00000548214.1:ENST00000392508.2:ENST00000550178.1:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000550845.5	protein_coding	protein_coding	protein_coding	protein_coding	49	77	2	1.24102	1.4852699999999999	1.72952	4.27981e-4	2.36475e-6	0.0141511	1.51856e-4
chr17	47050051	47050146	8731344	0	+	0.484211	(0.459,0.49]	chr17	829606	10	EXON_PSEUDO	EXON_PSEUDO	LRRC37A17P	ENSG00000263142.5	ENST00000570311.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	30	25	2	1.47183	1.4844499999999998	1.49707	0.00742322	0.00531674	0.131104	0.101267
chr5	169591047	169591108	3381214	0	+	0.327869	(0.32,0.36]	chr5	310456	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SPDL1	ENSG00000040275.17	ENST00000506574.5:ENST00000515224.5:ENST00000507232.5:ENST00000510751.5:ENST00000508247.5:ENST00000265295.9:ENST00000513941.5:ENST00000512028.5:ENST00000509785.5:ENST00000513795.1:ENST00000503871.1:ENST00000505977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	74	37	2	1.27539	1.4834	1.69141	0.00229059	1.23288e-4	0.0555118	0.0049353
chr19	55092492	55092544	9539810	0	-	0.807692	(0.629,1]	chr19	943857	2	CDS	CDS:EXON_MRNA	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8:ENST00000590268.1:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	175	271	2	1.3899	1.4746199999999998	1.55934	3.28426e-12	1e-12	5.32874e-10	1.72912e-10
chr1	23975025	23975077	545948	0	-	0.384615	(0.36,0.392]	chr1	60430	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000485841.5:ENST00000338597.9:ENST00000495785.1:ENST00000473754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	93	50	2	1.46776	1.4733049999999999	1.47885	1.18523e-4	6.42724e-5	0.00482863	0.00283979
chr10	71820239	71820335	6156469	0	-	0.479167	(0.459,0.49]	chr10	551072	1	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.15	ENST00000394936.8:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	98	80	2	1.21054	1.47222	1.7339	2.12601e-4	1.42484e-8	0.00784864	1.41076e-6
chr4	4274366	4274446	2823623	0	-	0.65	(0.629,1]	chr4	267765	1	CDS	CDS:EXON_MRNA	LYAR	ENSG00000145220.14	ENST00000343470.9:ENST00000452476.5	protein_coding	protein_coding	protein_coding	protein_coding	29	46	2	1.3445	1.471835	1.59917	0.00359468	4.23263e-4	0.0761055	0.0140593
chr12	27691838	27691928	6855326	0	+	0.455556	(0.424,0.459]	chr12	626232	2	CDS	CDS:EXON_MRNA	PPFIBP1	ENSG00000110841.14	ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000542629.5:ENST00000539326.1	protein_coding	protein_coding	protein_coding	protein_coding	61	41	2	1.46049	1.46765	1.47481	0.00102552	2.37433e-4	0.0286409	0.00867408
chr1	108699161	108699255	249796	0	+	0.521277	(0.49,0.526]	chr1	25277	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1:ENST00000485810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	124	111	2	1.43918	1.465185	1.49119	1.0382e-7	8.13027e-8	8.72381e-6	7.0291e-6
chr6	43770507	43770606	3784597	0	+	0.585859	(0.57,0.629]	chr6	347116	4	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.26	ENST00000476772.5:ENST00000672860.3:ENST00000372067.8:ENST00000425836.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	59	63	2	1.32204	1.4650050000000001	1.60797	2.34764e-4	1.93411e-5	0.00849866	9.80761e-4
chr22	38317345	38317439	10035390	0	-	0.893617	(0.629,1]	chr22	1000309	3	UTR5	UTR5:EXON_MRNA:INTRON	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6:ENST00000403904.5:ENST00000413574.6:ENST00000405675.7	protein_coding	protein_coding	protein_coding	protein_coding	47	71	2	1.06085	1.46004	1.85923	0.00228292	2.36439e-6	0.0556759	1.51856e-4
chr1	24655037	24655129	76822	0	+	0.48913	(0.459,0.49]	chr1	7871	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000470243.5:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	73	59	2	1.37719	1.45566	1.53413	3.51583e-4	8.90882e-6	0.0122614	4.98455e-4
chr12	56714601	56714668	7178825	0	-	0.507463	(0.49,0.526]	chr12	662464	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000550343.1:ENST00000548084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	190	165	2	1.11747	1.45138	1.78529	3.87171e-7	1e-12	2.91501e-5	1.73382e-10
chr17	50746621	50746702	8741943	0	+	0.432099	(0.424,0.459]	chr17	832164	2	CDS	CDS:UTR3:EXON_MRNA	LUC7L3	ENSG00000108848.16	ENST00000393227.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000504065.5:ENST00000509487.1:ENST00000511974.5:ENST00000513969.5:ENST00000503728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	366	239	2	1.28748	1.45133	1.61518	5.20051e-12	1e-12	8.30092e-10	1.73382e-10
chr19	41894206	41894306	9353579	0	+	0.58	(0.57,0.629]	chr19	909213	1	CDS	CDS:UTR3:EXON_MRNA	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000598812.5:ENST00000594521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	43	2	1.28633	1.450145	1.61396	0.00169858	5.97351e-4	0.0441469	0.0189229
chr12	20641247	20641346	6844789	0	+	0.494949	(0.49,0.526]	chr12	625101	9	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000544307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	44	2	1.34911	1.44992	1.55073	0.00137903	2.50775e-4	0.0367775	0.00900053
chr3	50066415	50066502	1869186	0	+	0.448276	(0.424,0.459]	chr3	189856	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000434592.5:ENST00000421682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	51	34	2	1.25432	1.44791	1.6415	0.00743974	2.40979e-4	0.129307	0.00872168
chr17	75668570	75668625	8801808	0	+	0.436364	(0.424,0.459]	chr17	838047	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000584861.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	75	50	2	1.27502	1.44761	1.6202	0.002021	6.49087e-6	0.0496618	3.78523e-4
chr19	11195718	11195799	9435600	0	-	0.555556	(0.526,0.57]	chr19	925510	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	KANK2	ENSG00000197256.11	ENST00000586659.6:ENST00000589359.5:ENST00000590400.1:ENST00000588724.5:ENST00000592903.5:ENST00000592215.1:ENST00000590095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	131	118	2	1.40334	1.441185	1.47903	8.17961e-7	3.88455e-9	5.77714e-5	4.21097e-7
chr17	43296551	43296651	8938427	0	-	0.52	(0.49,0.526]	chr17	859071	664	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3487	3046	2	1.41497	1.4399950000000001	1.46502	1e-12	1e-12	1.73382e-10	1.72912e-10
chrX	103586775	103586864	10190173	0	+	0.393258	(0.392,0.424]	chrX	1014725	1	CDS	CDS:EXON_MRNA	TCEAL4	ENSG00000133142.19	ENST00000372629.4:ENST00000468024.5:ENST00000472484.6:ENST00000415568.2:ENST00000490644.5:ENST00000459722.1:ENST00000472745.1:ENST00000494801.5:ENST00000434216.2:ENST00000425011.1:ENST00000469586.1	protein_coding	protein_coding	protein_coding	protein_coding	46	27	2	1.42771	1.439505	1.4513	0.00490689	0.00341613	0.0964485	0.0749189
chr3	101685872	101685928	2376252	0	-	0.446429	(0.424,0.459]	chr3	228536	2	CDS	CDS:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	29	2	1.36152	1.4347750000000001	1.50803	0.00771458	0.00145319	0.130982	0.0382827
chr11	62841728	62841809	6617973	0	-	0.407407	(0.392,0.424]	chr11	604372	3	UTR5	UTR5:EXON_MRNA	WDR74	ENSG00000133316.16	ENST00000525239.5:ENST00000538098.2	protein_coding	protein_coding	protein_coding	protein_coding	7879	4493	2	1.38721	1.434515	1.48182	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	34071900	34071987	6368430	0	+	0.37931	(0.36,0.392]	chr11	570502	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000526494.5:ENST00000532755.5:ENST00000533641.5:ENST00000530008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	130	67	2	0.904983	1.4333715	1.96176	0.00463052	2.05705e-9	0.0933849	2.32367e-7
chrX	103676831	103676927	10397668	0	-	0.552083	(0.526,0.57]	chrX	1031972	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	80	71	2	1.25955	1.426995	1.59444	1.41362e-4	3.27779e-6	0.00556889	2.01751e-4
chr1	244863714	244863813	910906	0	-	0.747475	(0.629,1]	chr1	100874	2	CDS	CDS:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000638952.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	57	86	2	1.37441	1.42537	1.47633	7.71739e-5	9.86082e-6	0.00332713	5.4976e-4
chr8	67158451	67158523	4998943	0	+	0.430556	(0.424,0.459]	chr8	448581	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSPP1	ENSG00000104218.16	ENST00000676113.1:ENST00000675306.2:ENST00000678156.1:ENST00000262210.11:ENST00000678017.1:ENST00000675869.1:ENST00000678542.1:ENST00000677619.1:ENST00000676605.1:ENST00000676471.1:ENST00000677256.1:ENST00000676847.1:ENST00000677009.1:ENST00000676317.1:ENST00000677592.1:ENST00000676573.1:ENST00000678318.1:ENST00000677473.1:ENST00000674993.1:ENST00000679226.1:ENST00000676882.1:ENST00000675955.1:ENST00000677430.1:ENST00000677455.1:ENST00000678616.1:ENST00000678362.1:ENST00000679112.1:ENST00000678645.1:ENST00000676567.1:ENST00000677845.1:ENST00000519163.6:ENST00000676858.1:ENST00000678747.1:ENST00000519668.1:ENST00000676697.1:ENST00000677855.1:ENST00000676695.1:ENST00000676534.1:ENST00000678138.1:ENST00000678807.1:ENST00000677052.1:ENST00000679274.1:ENST00000679042.1:ENST00000678635.1:ENST00000676804.1:ENST00000679295.1:ENST00000677964.1:ENST00000676968.1:ENST00000678895.1:ENST00000678723.1:ENST00000677131.1:ENST00000521324.3:ENST00000675990.1:ENST00000521168.5:ENST00000677697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	82	53	2	1.33042	1.4251749999999999	1.51993	2.50257e-4	5.90239e-5	0.00898302	0.00263942
chr1	89869544	89869644	230934	0	+	0.44	(0.424,0.459]	chr1	23061	225	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	68	44	2	1.32727	1.4226999999999999	1.51813	0.00103404	1.72501e-4	0.0288764	0.00657582
chr4	139370210	139370307	2743462	0	+	0.340206	(0.32,0.36]	chr4	260742	1	CDS	CDS:EXON_MRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1	protein_coding	protein_coding	protein_coding	protein_coding	43	21	2	1.33653	1.42066	1.50479	0.0118671	0.00907659	0.190222	0.149621
chr19	6422339	6422436	9422063	0	-	0.484536	(0.459,0.49]	chr19	922462	1	CDS	CDS:UTR5:EXON_MRNA	KHSRP	ENSG00000088247.19	ENST00000600480.2:ENST00000398148.7:ENST00000599395.5:ENST00000595548.5:ENST00000595258.1:ENST00000597704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	33	2	1.37514	1.42048	1.46582	0.00281169	0.00253242	0.0662445	0.060904
chr19	55655104	55655153	9389072	0	+	0.510204	(0.49,0.526]	chr19	916398	1	CDS_START	CDS_START:CDS:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000588850.5:ENST00000587196.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	35	2	1.39158	1.4188399999999999	1.4461	0.00430673	0.0013715	0.0868208	0.0365798
chr1	45616625	45616703	136925	0	+	0.435897	(0.424,0.459]	chr1	16826	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	53	34	2	1.39915	1.411305	1.42346	0.00494471	7.19463e-4	0.0942715	0.0218658
chrM	12431	12526	10480499	0	+	0.389474	(0.36,0.392]	chrM	1039009	2	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	54	28	2	1.39989	1.4080650000000001	1.41624	0.00378685	0.00369032	0.0805295	0.078873
chr16	28844697	28844779	8540773	0	-	0.585366	(0.57,0.629]	chr16	803197	1	CDS	CDS:UTR3:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1:ENST00000561644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	40	2	1.14492	1.40716	1.6694	0.01289	1.45621e-4	0.196324	0.00570619
chr15	34404985	34405055	8126112	0	-	0.414286	(0.392,0.424]	chr15	751819	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000569781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	77	44	2	1.25879	1.4045800000000002	1.55037	0.00246828	5.09102e-5	0.0594095	0.00233068
chrX	134796107	134796205	10444544	0	-	0.561224	(0.526,0.57]	chrX	1035196	1	CDS_START	CDS_START:CDS:EXON_MRNA	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000486347.5:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding	43	38	2	1.38613	1.40429	1.42245	0.00264104	0.00118027	0.0633121	0.0322848
chr17	28673401	28673463	8684988	0	+	0.451613	(0.424,0.459]	chr17	821880	1	CDS_START	CDS_START:CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000577713.1:ENST00000584312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	97	63	2	1.19959	1.40306	1.60653	0.0010029	6.77552e-7	0.0281582	4.91505e-5
chrM	3015	3111	10480412	0	+	0.4375	(0.424,0.459]	chrM	1038987	15	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	3996	2497	2	1.36323	1.396715	1.4302	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	7156	7252	10480449	0	+	0.520833	(0.49,0.526]	chrM	1038991	13	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	117	100	2	1.28407	1.3953	1.50653	4.91726e-6	1.75727e-7	2.90034e-4	1.424e-5
chr12	113918391	113918447	7287811	0	-	0.589286	(0.57,0.629]	chr12	672197	1	CDS	CDS:EXON_MRNA	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	26	2	1.29186	1.39408	1.4963	0.0128983	0.00932792	0.19644	0.161654
chr11	12870320	12870419	6326865	0	+	0.484848	(0.459,0.49]	chr11	567876	49	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	73	56	2	1.32993	1.392725	1.45552	5.5569e-4	3.76274e-5	0.0176294	0.00180287
chr1	45604935	45605016	136788	0	+	0.432099	(0.424,0.459]	chr1	16775	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	92	58	2	1.35839	1.39269	1.42699	3.30475e-4	1.86507e-5	0.0112871	9.55363e-4
chr22	38872121	38872190	10039017	0	-	0.608696	(0.57,0.629]	chr22	1000901	1	CDS_START	CDS_START:CDS:EXON_MRNA	CBX6	ENSG00000183741.12	ENST00000407418.8:ENST00000216083.6:ENST00000469420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	37	2	1.30445	1.39081	1.47717	0.00325214	0.00251689	0.0731902	0.0603959
chr5	150040780	150040879	3356571	0	+	0.50505	(0.49,0.526]	chr5	308485	1	CDS	CDS:UTR3:EXON_MRNA	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1:ENST00000513318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	31	2	1.23635	1.38704	1.53773	0.0100448	0.0021173	0.170122	0.0518957
chr19	36228747	36228819	9333141	0	+	0.444444	(0.424,0.459]	chr19	905882	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5:ENST00000587285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	83	52	2	1.23009	1.386525	1.54296	7.96273e-4	4.13829e-5	0.0235011	0.00192439
chr3	37327529	37327627	1828950	0	+	0.357143	(0.32,0.36]	chr3	185140	41	CDS	CDS:EXON_MRNA:INTRON	GOLGA4	ENSG00000144674.17	ENST00000444882.5:ENST00000356847.8:ENST00000361924.7:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding	75	36	2	1.19541	1.37879	1.56217	0.0127208	6.64472e-5	0.193984	0.00291649
chr22	17822099	17822170	9981366	0	-	0.619718	(0.57,0.629]	chr22	993443	2	CDS	CDS:UTR3:EXON_MRNA	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	38	39	2	1.31425	1.3771849999999999	1.44012	0.00548761	9.47384e-4	0.102321	0.0268842
chr19	47094534	47094608	9518135	0	-	0.554054	(0.526,0.57]	chr19	939321	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	42	2	1.28285	1.37554	1.46823	0.00169625	9.94052e-4	0.0440901	0.0276375
chr19	9838557	9838648	9281150	0	+	0.659341	(0.629,1]	chr19	896329	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIN1	ENSG00000127445.14	ENST00000247970.9:ENST00000587625.5:ENST00000586025.5:ENST00000590540.5:ENST00000588695.5:ENST00000586352.5:ENST00000585442.5:ENST00000589058.5:ENST00000380889.6:ENST00000591777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	41	2	1.25514	1.374765	1.49439	0.00558349	0.00245456	0.104048	0.0590839
chr17	43266756	43266856	8938129	0	-	0.51	(0.49,0.526]	chr17	859071	366	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3325	2770	2	1.36887	1.370995	1.37312	1e-12	1e-12	1.73382e-10	1.72912e-10
chr10	102159432	102159500	5961879	0	+	0.544118	(0.526,0.57]	chr10	535173	1	CDS	CDS:UTR3:EXON_MRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000476468.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	44	38	2	1.33032	1.370855	1.41139	0.0027836	0.00163556	0.064521	0.042571
chr7	102568026	102568105	4793341	0	-	0.620253	(0.57,0.629]	chr7	430378	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	186	185	2	1.33364	1.37047	1.4073	6.87277e-10	1.54483e-10	8.23717e-8	2.03038e-8
chr19	49491424	49491485	9374837	0	+	0.606557	(0.57,0.629]	chr19	913234	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000677048.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1:ENST00000474171.1:ENST00000476300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	151	150	2	1.30656	1.364685	1.42281	8.5878e-8	1.88988e-9	7.46438e-6	2.1436e-7
chr1	1716411	1716478	494080	0	-	0.462687	(0.459,0.49]	chr1	52879	2	CDS	CDS:EXON_MRNA	CDK11A	ENSG00000008128.23	ENST00000404249.8:ENST00000356200.7:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	31	2	1.35096	1.3630499999999999	1.37514	0.00741088	0.00281169	0.128821	0.0662445
chr11	62677982	62678050	6616687	0	-	0.602941	(0.57,0.629]	chr11	603967	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	UBXN1	ENSG00000162191.14	ENST00000532904.5:ENST00000294119.6:ENST00000616865.4:ENST00000533000.5:ENST00000301935.10:ENST00000533476.5:ENST00000529640.5:ENST00000525717.5:ENST00000534176.1:ENST00000525004.5:ENST00000524762.5:ENST00000527421.5:ENST00000526919.5:ENST00000533908.5:ENST00000528907.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	71	68	2	1.10495	1.361285	1.61762	5.0424e-4	2.36865e-5	0.0161468	0.00117474
chr10	32019857	32019908	6101607	0	-	0.392157	(0.392,0.424]	chr10	546848	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5:ENST00000493889.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	121	65	2	1.19139	1.357505	1.52362	1.39057e-4	1.09916e-5	0.00558151	6.11886e-4
chr3	51412378	51412429	2280566	0	-	0.607843	(0.57,0.629]	chr3	222288	1	CDS	CDS:EXON_MRNA	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1:ENST00000335891.5	protein_coding	protein_coding	protein_coding	protein_coding	38	38	2	1.1635	1.3574950000000001	1.55149	0.0081873	9.83415e-4	0.137516	0.0276233
chr11	65425968	65426068	6415900	0	+	0.48	(0.459,0.49]	chr11	577189	33	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	165	117	2	0.990507	1.3517085	1.71291	4.16853e-5	4.97853e-10	0.00197379	6.08476e-8
chr1	207336903	207336988	416983	0	+	0.435294	(0.424,0.459]	chr1	45004	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD55	ENSG00000196352.18	ENST00000695822.1:ENST00000695823.1:ENST00000695826.1:ENST00000695825.1:ENST00000695824.1:ENST00000367063.6:ENST00000695827.1:ENST00000695828.1:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2:ENST00000695831.1:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	99	61	2	1.25355	1.3509799999999998	1.44841	7.35401e-4	6.46102e-6	0.0220209	3.76851e-4
chr10	103440483	103440581	5969478	0	+	0.673469	(0.629,1]	chr10	536291	3	CDS	CDS:EXON_MRNA	PDCD11	ENSG00000148843.15	ENST00000369797.8:ENST00000649849.1	protein_coding	protein_coding	protein_coding	protein_coding	60	84	2	0.923049	1.3504945	1.77794	0.00394817	3.88699e-7	0.0800352	2.95254e-5
chr1	244863911	244864010	910908	0	-	0.717172	(0.629,1]	chr1	100874	4	CDS	CDS:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000638952.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	141	200	2	1.10144	1.341495	1.58155	1.11766e-6	1e-12	7.78635e-5	1.73382e-10
chr16	670891	670945	8296551	0	+	0.666667	(0.629,1]	chr16	770832	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHOT2	ENSG00000140983.14	ENST00000561983.5:ENST00000563776.6:ENST00000563134.5:ENST00000315082.9:ENST00000569675.5:ENST00000563637.5:ENST00000570280.5:ENST00000567017.5:ENST00000568950.5:ENST00000602564.5:ENST00000562333.5:ENST00000561929.1:ENST00000569943.6:ENST00000566965.5:ENST00000568636.5:ENST00000569358.5:ENST00000567589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	49	2	1.32118	1.34064	1.3601	0.00330998	0.00113299	0.072275	0.0302756
chrX	72377066	72377165	10369991	0	-	0.353535	(0.32,0.36]	chrX	1029636	249	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	247	112	2	1.30499	1.3402150000000002	1.37544	2.39376e-7	3.42475e-8	1.9226e-5	3.15773e-6
chr17	76736798	76736885	9017487	0	-	0.804598	(0.629,1]	chr17	870849	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000452355.7:ENST00000508921.7:ENST00000583836.1:ENST00000358156.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	54	76	2	1.17349	1.3390849999999999	1.50468	5.36607e-4	3.91773e-5	0.0171151	0.001846
chr11	65422972	65423072	6415870	0	+	0.64	(0.629,1]	chr11	577189	3	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1	lncRNA	lncRNA	lncRNA	lncRNA	47	67	2	1.31026	1.337835	1.36541	4.21149e-4	2.93171e-4	0.0141684	0.0103295
chr4	1935202	1935262	2545256	0	+	0.55	(0.526,0.57]	chr4	244599	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000514045.5:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000420906.6:ENST00000503128.5:ENST00000677559.1:ENST00000512700.2:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	124	103	2	1.19308	1.337025	1.48097	1.70553e-5	1.24842e-7	8.75733e-4	1.04053e-5
chrX	77633565	77633619	10383602	0	-	0.37037	(0.36,0.392]	chrX	1030456	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000675908.1:ENST00000623242.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	29	2	1.31253	1.33407	1.35561	0.00605599	0.00353021	0.111016	0.0751262
chr12	19440235	19440323	6839222	0	+	0.761364	(0.629,1]	chr12	624968	6	CDS	CDS:EXON_MRNA:INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7	protein_coding	protein_coding	protein_coding	protein_coding	97	135	2	1.05618	1.333645	1.61111	4.14267e-5	7.54606e-9	0.00192612	7.82798e-7
chrM	15319	15413	10480523	0	+	0.489362	(0.459,0.49]	chrM	1039012	6	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	72	52	2	1.1553	1.33355	1.5118	0.00120432	1.43988e-4	0.0326347	0.00564049
chr1	214386843	214386922	855351	0	-	0.620253	(0.57,0.629]	chr1	95288	1	CDS	CDS:UTR3:EXON_MRNA	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	76	74	2	1.13359	1.3319800000000002	1.53037	5.24059e-4	6.20789e-6	0.0167673	3.62793e-4
chr12	53033881	53033957	6913474	0	+	0.5	(0.49,0.526]	chr12	630597	2	CDS	CDS:UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	221	180	2	1.27521	1.32957	1.38393	2.20928e-8	8.4871e-12	2.10561e-6	1.31617e-9
chr7	102569834	102569924	4793360	0	-	0.411111	(0.392,0.424]	chr7	430384	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	POLR2J3	ENSG00000168255.20	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000507355.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	61	33	2	1.30768	1.32756	1.34744	0.00489648	0.0018783	0.0964485	0.0465582
chrX	101391754	101391822	10185163	0	+	0.5	(0.49,0.526]	chrX	1014266	1	CDS	CDS:UTR5:EXON_MRNA	RPL36A	ENSG00000241343.10	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	52	42	2	1.16837	1.3233549999999998	1.47834	0.00334632	9.25303e-4	0.0728314	0.0264489
chr5	71510456	71510555	3208059	0	+	0.454545	(0.424,0.459]	chr5	296025	11	CDS	CDS:EXON_MRNA	BDP1	ENSG00000145734.20	ENST00000358731.9:ENST00000508917.6:ENST00000508157.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	53	32	2	1.22475	1.32039	1.41603	0.00539977	0.0031708	0.102816	0.0699484
chr17	75261900	75261983	8799811	0	+	0.698795	(0.629,1]	chr17	837370	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	MRPS7	ENSG00000125445.11	ENST00000579761.5:ENST00000245539.11:ENST00000579002.5:ENST00000583407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	38	2	1.25514	1.319275	1.38341	0.00774215	0.00558349	0.130982	0.104048
chr3	50057821	50057912	1869084	0	+	0.483516	(0.459,0.49]	chr3	189807	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000483350.1:ENST00000446471.1:ENST00000466247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	61	45	2	1.11533	1.317775	1.52022	0.00716228	1.01117e-4	0.126634	0.00418121
chr16	89490244	89490323	8624753	0	-	0.822785	(0.629,1]	chr16	813754	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	34	2	1.24245	1.3129300000000002	1.38341	0.0123959	0.00774215	0.197722	0.130982
chrX	71283644	71283735	10155984	0	+	0.615385	(0.57,0.629]	chrX	1012282	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678414.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000678852.1:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	132	127	2	1.05519	1.309045	1.5629	5.66785e-5	7.78898e-10	0.00257126	9.32479e-8
chr5	171392709	171392767	3390731	0	+	0.465517	(0.459,0.49]	chr5	311077	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	75	55	2	0.997874	1.2928870000000001	1.5879	0.0102482	4.2606e-6	0.168042	2.57151e-4
chr2	231461730	231461825	1722170	0	-	0.547368	(0.526,0.57]	chr2	176773	3	CDS	CDS:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	72	58	2	1.23499	1.29287	1.35075	3.74236e-4	3.5452e-4	0.0126434	0.0122958
chr5	140658938	140659013	3338180	0	+	0.493333	(0.49,0.526]	chr5	306584	1	CDS	CDS:EXON_MRNA	IK	ENSG00000113141.19	ENST00000417647.7:ENST00000515015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	54	43	2	1.23184	1.29163	1.35142	0.00192964	0.00183471	0.0476406	0.0469869
chrX	1402042	1402133	10068293	0	+	0.615385	(0.57,0.629]	chrX	1004804	4	EXON_LNCRNA	EXON_LNCRNA	ASMTL-AS1	ENSG00000236017.8	ENST00000443929.6:ENST00000425740.7:ENST00000420411.7	lncRNA	lncRNA	lncRNA	lncRNA	83	79	2	1.12111	1.28858	1.45605	6.05344e-4	3.94197e-6	0.0188826	2.39291e-4
chr16	1964769	1964841	8492227	0	-	0.569444	(0.526,0.57]	chr16	795436	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000529806.5:ENST00000527302.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	117	93	2	0.96773	1.28833	1.60893	5.12793e-4	7.87331e-8	0.0164717	6.81765e-6
chr19	1274405	1274500	9261240	0	+	0.673684	(0.629,1]	chr19	892234	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIRBP	ENSG00000099622.14	ENST00000591935.5:ENST00000585913.5:ENST00000586773.5:ENST00000587896.6:ENST00000593093.5:ENST00000590347.5:ENST00000587169.5:ENST00000586636.5:ENST00000591376.5:ENST00000589235.5:ENST00000585914.5:ENST00000592234.5:ENST00000444172.6:ENST00000590188.5:ENST00000588917.2:ENST00000586555.2:ENST00000621399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	53	2	1.05241	1.288145	1.52388	0.00728616	4.11661e-4	0.128704	0.013709
chr1	28507365	28507433	89664	0	+	0.647059	(0.629,1]	chr1	9744	1	EXON_SMALL	EXON_SMALL:INTRON	RCC1:SNORA73A	ENSG00000180198.17:ENSG00000274266.1	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000364938.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding	43	60	2	1.11716	1.2869950000000001	1.45683	0.00753345	7.27539e-5	0.13089	0.00315305
chr1	67415165	67415252	646009	0	-	0.724138	(0.629,1]	chr1	71784	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	42	58	2	1.15932	1.285015	1.41071	0.004414	2.46399e-4	0.0875511	0.00891382
chr5	179619268	179619337	3679381	0	-	0.434783	(0.424,0.459]	chr5	334940	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000329433.11:ENST00000393432.9:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000519958.5:ENST00000514731.5:ENST00000521173.5:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000522958.5:ENST00000521790.5:ENST00000504348.5:ENST00000513225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	170	100	2	1.13826	1.28383	1.4294	8.42112e-5	1.79775e-8	0.00358402	1.76532e-6
chr1	108692779	108692867	249722	0	+	0.5	(0.49,0.526]	chr1	25248	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370022.9:ENST00000467302.5:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	125	97	2	1.15474	1.28356	1.41238	1.31722e-5	3.62005e-6	6.92365e-4	2.2104e-4
chr17	7939670	7939749	8642721	0	+	0.607595	(0.57,0.629]	chr17	817637	3	CDS	CDS:UTR3:EXON_MRNA	CNTROB	ENSG00000170037.14	ENST00000380262.7:ENST00000563694.6:ENST00000565740.5:ENST00000571540.5:ENST00000571632.5:ENST00000576922.5:ENST00000574430.5:ENST00000576723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	54	50	2	0.956443	1.2833615	1.61028	0.0103903	1.05801e-4	0.170122	0.00436338
chrX	16870053	16870130	10285143	0	-	0.714286	(0.629,1]	chrX	1023028	1	UTR5	UTR5:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000404022.5:ENST00000468092.1:ENST00000493145.1	protein_coding	protein_coding	protein_coding	protein_coding	48	65	2	0.988478	1.275439	1.5624	0.00617112	4.84888e-5	0.112959	0.00222141
chr17	30184998	30185094	8689556	0	+	0.46875	(0.459,0.49]	chr17	822618	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000394826.8:ENST00000475652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	87	61	2	1.24079	1.2705000000000002	1.30021	6.90168e-4	7.9362e-5	0.0207291	0.00340823
chr19	47094461	47094534	9518134	0	-	0.520548	(0.49,0.526]	chr19	939321	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000594019.5:ENST00000597069.1:ENST00000595341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	61	48	2	1.20452	1.2701799999999999	1.33584	0.00178643	8.25882e-4	0.0463555	0.0239654
chr11	122231653	122231753	6764534	0	-	0.45	(0.424,0.459]	chr11	617593	274	INTRON	INTRON	MIR100HG	ENSG00000255248.10	ENST00000686059.1:ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000654571.2:ENST00000660329.2:ENST00000686772.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5	lncRNA	lncRNA	lncRNA	lncRNA	369	212	2	1.22241	1.2685	1.31459	1.38016e-10	4.0612e-12	1.8039e-8	6.53951e-10
chrX	53412978	53413058	10345629	0	-	0.4625	(0.459,0.49]	chrX	1027424	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	229	159	2	1.12986	1.26735	1.40484	2.94087e-7	2.60615e-10	2.26072e-5	3.3016e-8
chr19	12714820	12714879	9442520	0	-	0.644068	(0.629,1]	chr19	926968	1	CDS	CDS:EXON_MRNA:INTRON	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9:ENST00000450764.6:ENST00000592287.5:ENST00000588216.5:ENST00000585886.5:ENST00000589956.5:ENST00000588151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:processed_transcript	36	49	2	1.14857	1.261015	1.37346	0.00874277	8.9728e-4	0.144342	0.0253298
chr11	32098458	32098528	6364292	0	+	0.428571	(0.424,0.459]	chr11	570012	1	CDS	CDS:EXON_MRNA	RCN1	ENSG00000049449.10	ENST00000054950.4:ENST00000533898.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	57	33	2	1.23855	1.260315	1.28208	0.00633795	0.0037084	0.114061	0.0775237
chr17	47050146	47050240	8731345	0	+	0.329787	(0.32,0.36]	chr17	829606	11	EXON_PSEUDO	EXON_PSEUDO	LRRC37A17P	ENSG00000263142.5	ENST00000570311.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	81	35	2	1.13833	1.2579799999999999	1.37763	0.00678998	0.00122072	0.11856	0.0326964
chr9	37126435	37126519	5378994	0	+	0.416667	(0.392,0.424]	chr9	480672	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	88	45	2	1.18333	1.2552349999999999	1.32714	0.00311088	3.22457e-4	0.0706078	0.0112909
chr14	21428061	21428157	7774244	0	-	0.489583	(0.459,0.49]	chr14	715247	3	CDS	CDS:EXON_MRNA:INTRON	CHD8	ENSG00000100888.15	ENST00000430710.8:ENST00000646647.2:ENST00000645929.1:ENST00000557364.6:ENST00000643469.1:ENST00000646340.1:ENST00000555962.6:ENST00000645140.1:ENST00000642518.1:ENST00000643048.1:ENST00000553651.2:ENST00000646063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	61	42	2	1.17732	1.252745	1.32817	0.00237214	0.00226296	0.0571553	0.0552099
chr17	38852862	38852928	8923577	0	-	0.454545	(0.424,0.459]	chr17	856036	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL23:SNORA21	ENSG00000125691.14:ENSG00000199293.1	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1:ENST00000584056.1:ENST00000362423.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron	71	41	2	1.03067	1.25274	1.47481	0.0114679	2.37433e-4	0.1842	0.00867408
chrX	154446487	154446560	10244323	0	+	0.589041	(0.57,0.629]	chrX	1020702	2	CDS	CDS:EXON_MRNA	FAM50A	ENSG00000071859.15	ENST00000393600.8:ENST00000464419.5:ENST00000481619.5:ENST00000158526.9:ENST00000478509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	108	100	2	0.970604	1.2469670000000002	1.52333	8.59299e-4	4.80897e-8	0.0247377	4.30692e-6
chr15	90390777	90390877	8079124	0	+	0.44	(0.424,0.459]	chr15	747028	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560418.1:ENST00000559809.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	91	51	2	0.883115	1.2390825	1.59505	0.0122595	1.90258e-5	0.195576	9.6559e-4
chr6	44396340	44396440	3785740	0	+	0.46	(0.459,0.49]	chr6	347528	1	CDS	CDS:EXON_MRNA	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	80	55	2	1.2037	1.23709	1.27048	0.00102208	3.54972e-4	0.0285498	0.0120431
chr7	102667106	102667185	4793881	0	-	0.620253	(0.57,0.629]	chr7	430542	2	CDS	CDS:EXON_MRNA	POLR2J2	ENSG00000228049.7	ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding	protein_coding	161	148	2	1.0214	1.235245	1.44909	3.3995e-5	2.76055e-10	0.0016337	3.47067e-8
chrX	69672484	69672584	10150291	0	+	0.56	(0.526,0.57]	chrX	1011778	18	INTRON	INTRON	EDA	ENSG00000158813.18	ENST00000374553.6:ENST00000374548.5:ENST00000502251.5:ENST00000533317.5:ENST00000525810.5:ENST00000527388.5:ENST00000374552.9:ENST00000524573.5:ENST00000503592.5:ENST00000510681.2:ENST00000530321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	320	246	2	1.05291	1.23149	1.41007	8.42913e-9	1e-12	8.68524e-7	1.73382e-10
chr20	3907925	3908006	9559063	0	+	0.432099	(0.424,0.459]	chr20	946627	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	65	37	2	1.14952	1.2261000000000002	1.30268	0.00923774	0.00133407	0.160317	0.0352042
chr9	133348217	133348243	5520909	0	+	0.653846	(0.629,1]	chr9	495881	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	68	89	2	1.0155	1.224125	1.43275	0.0013433	8.81096e-6	0.0354382	4.92149e-4
chr12	54281443	54281502	6916376	0	+	0.542373	(0.526,0.57]	chr12	631305	2	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	HNRNPA1	ENSG00000135486.19	ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	182	138	2	1.06323	1.22318	1.38313	3.76453e-6	2.28012e-8	2.30039e-4	2.17035e-6
chr1	24654854	24654945	76820	0	+	0.516484	(0.49,0.526]	chr1	7871	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.18	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000596378.1:ENST00000470243.5:ENST00000496882.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	120	90	2	1.18848	1.21773	1.24698	5.75435e-5	1.42941e-5	0.00262112	7.50233e-4
chr20	35725096	35725155	9736040	0	-	0.38983	(0.36,0.392]	chr20	964205	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000492779.5:ENST00000448303.5:ENST00000490484.7:ENST00000374038.7:ENST00000412738.5:ENST00000434927.5:ENST00000425184.5:ENST00000481037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	278	124	2	1.05081	1.2136900000000002	1.37657	7.45545e-6	7.13664e-9	4.27499e-4	7.4224e-7
chr12	20441211	20441311	6842776	0	+	0.44	(0.424,0.459]	chr12	625044	706	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	94	52	2	1.13928	1.21347	1.28766	0.00106091	5.68359e-4	0.0295985	0.0180217
chrX	71296850	71296948	10156136	0	+	0.540816	(0.526,0.57]	chrX	1012334	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	154	117	2	1.01908	1.21306	1.40704	6.37811e-5	5.84351e-8	0.00282428	5.26794e-6
chr17	41688884	41688961	8715720	0	+	0.701299	(0.629,1]	chr17	826671	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	35	45	2	1.066	1.208785	1.35157	0.00895989	0.00390749	0.155806	0.0816719
chr19	1615744	1615821	9403089	0	-	0.675325	(0.629,1]	chr19	919020	4	CDS	CDS:EXON_MRNA	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2:ENST00000610756.4:ENST00000586164.1:ENST00000590605.2:ENST00000586410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	73	2	1.02638	1.20844	1.3905	0.00376367	5.62529e-5	0.0816719	0.00255239
chrX	41334493	41334590	10116238	0	+	0.701031	(0.629,1]	chrX	1008595	2	SS5_PROX	SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000610559.5:ENST00000611546.2:ENST00000478993.5:ENST00000457138.7:ENST00000643821.1:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000615742.4:ENST00000647219.1:ENST00000480592.6:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000645783.1:ENST00000642624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	69	91	2	0.961966	1.207188	1.45241	0.00411456	1.31823e-6	0.0831491	8.96115e-5
chr22	38505950	38506043	10036293	0	-	0.666667	(0.629,1]	chr22	1000464	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000479734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	43	55	2	1.06899	1.1854200000000001	1.30185	0.00555185	0.00140541	0.105396	0.0373356
chr19	17338953	17339037	9303152	0	+	0.619048	(0.57,0.629]	chr19	900606	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTPBP3	ENSG00000130299.17	ENST00000361619.9:ENST00000598038.5:ENST00000596218.5:ENST00000324894.13:ENST00000600625.5:ENST00000358792.11:ENST00000598493.5:ENST00000596166.5:ENST00000596001.5:ENST00000600610.5:ENST00000594018.5:ENST00000601983.1:ENST00000602056.1:ENST00000594703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	59	52	2	1.15887	1.18303	1.20719	0.0021425	0.00172967	0.0536774	0.0434481
chrX	77681915	77682014	10384097	0	-	0.393939	(0.392,0.424]	chrX	1030512	5	CDS	CDS:UTR3:EXON_MRNA	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3:ENST00000493470.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	95	46	2	1.00769	1.16577	1.32385	0.010519	1.99216e-4	0.172038	0.00747673
chr19	49107794	49107885	9373345	0	+	0.758242	(0.629,1]	chr19	912728	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	47	2	1.14476	1.1653449999999999	1.18593	0.00926005	0.0041123	0.160678	0.0831091
chr1	200852611	200852677	395164	0	+	0.439394	(0.424,0.459]	chr1	42369	2	CDS	CDS:UTR3:EXON_MRNA	CAMSAP2	ENSG00000118200.15	ENST00000358823.7:ENST00000236925.8:ENST00000413307.6:ENST00000447701.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	69	37	2	1.1445	1.1608200000000002	1.17714	0.00690971	0.00413859	0.120587	0.083795
chr22	41281044	41281142	10043817	0	-	0.591837	(0.57,0.629]	chr22	1001470	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000452543.5:ENST00000418067.1:ENST00000422838.1	protein_coding	protein_coding	protein_coding	protein_coding	73	63	2	1.04409	1.1596199999999999	1.27515	0.00175978	4.2363e-4	0.0441637	0.0142489
chr15	34387124	34387209	8125925	0	-	0.564706	(0.526,0.57]	chr15	751782	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000473125.5:ENST00000432566.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	94	69	2	1.15111	1.15785	1.16459	5.88419e-4	2.423e-4	0.0186439	0.0087685
chr6	165981307	165981407	4270567	0	-	0.32	[0,0.32]	chr6	386948	310	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	88	34	2	1.09269	1.155605	1.21852	0.0121895	0.00259614	0.194706	0.0623812
chr15	68782955	68783053	8226152	0	-	0.55102	(0.526,0.57]	chr15	763266	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000483551.6:ENST00000560303.1:ENST00000480858.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	64	47	2	0.991481	1.1507805	1.31008	0.00884007	9.03277e-4	0.145891	0.0254969
chrM	2631	2727	10480408	0	+	0.510417	(0.49,0.526]	chrM	1038987	11	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	7367	5265	2	1.12983	1.148825	1.16782	1e-12	1e-12	1.73382e-10	1.72912e-10
chr8	144791991	144792029	5311847	0	-	0.605263	(0.57,0.629]	chr8	475344	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL8	ENSG00000161016.18	ENST00000531975.5:ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000531767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	38	2	1.09855	1.1458149999999998	1.19308	0.0112325	0.0065057	0.181488	0.116758
chr11	16974392	16974492	6574874	0	-	0.45	(0.424,0.459]	chr11	597614	611	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	131	69	2	1.0555	1.14573	1.23596	5.20553e-4	1.18651e-4	0.0166195	0.00483317
chr14	23061083	23061133	7777174	0	-	0.58	(0.57,0.629]	chr14	715956	1	CDS	CDS:UTR3:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	48	41	2	1.1282	1.12958	1.13096	0.00888993	0.00576358	0.155252	0.106007
chr16	89561297	89561368	8482352	0	+	0.71831	(0.629,1]	chr16	793125	2	CDS	CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	48	2	1.069	1.1244399999999999	1.17988	0.0128008	0.00350286	0.195184	0.0746824
chr7	139422162	139422240	4568297	0	+	0.435897	(0.424,0.459]	chr7	410506	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000541170.7:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	93	48	2	0.992435	1.1063325	1.22023	0.00618552	9.43486e-4	0.11436	0.0267812
chrM	1219	1314	10480394	0	+	0.505263	(0.49,0.526]	chrM	1038986	7	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2044	1416	2	1.06441	1.103145	1.14188	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	65501555	65501655	6416257	0	+	0.42	(0.392,0.424]	chr11	577204	40	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1	lncRNA	lncRNA	lncRNA	lncRNA	1646	745	2	1.00177	1.0946099999999999	1.18745	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	151428244	151428328	766268	0	-	0.619048	(0.57,0.629]	chr1	83604	5	CDS	CDS:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	38	2	1.07141	1.0849799999999998	1.09855	0.0119269	0.0112325	0.19117	0.181488
chr3	160432282	160432359	2069356	0	+	0.350649	(0.32,0.36]	chr3	205493	1	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000486711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	114	43	2	1.0578	1.08094	1.10408	0.00544012	0.0026419	0.103558	0.0631592
chr11	65499472	65499571	6416236	0	+	0.363636	(0.36,0.392]	chr11	577204	19	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1:ENST00000544868.2:ENST00000617791.1:ENST00000620902.1	lncRNA	lncRNA	lncRNA	lncRNA	3477	1403	2	1.04742	1.0737450000000002	1.10007	1e-12	1e-12	1.73382e-10	1.72912e-10
chr11	47752915	47753008	6606025	0	-	0.44086	(0.424,0.459]	chr11	601552	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000534003.5:ENST00000533707.1:ENST00000540172.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	126	62	2	0.823922	1.0692059999999999	1.31449	0.00685868	1.09396e-4	0.122051	0.00450668
chr2	231455400	231455498	1722091	0	-	0.673469	(0.629,1]	chr2	176734	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	72	85	2	0.982477	1.0678935	1.15331	0.00568982	6.69962e-5	0.105396	0.00291649
chrX	53412080	53412166	10345618	0	-	0.488372	(0.459,0.49]	chrX	1027418	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000675065.1:ENST00000463684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	147	90	2	0.821927	1.0628435	1.30376	0.00406188	1.41072e-6	0.0822406	9.53888e-5
chr12	118376691	118376791	7030934	0	+	0.76	(0.629,1]	chr12	643935	1	CDS_START	CDS_START:CDS:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	44	50	2	0.930125	1.0585925	1.18706	0.010105	0.00907635	0.165922	0.157559
chr12	49741543	49741618	6905937	0	+	0.586667	(0.57,0.629]	chr12	629483	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000548809.5:ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000548894.5:ENST00000549445.5:ENST00000550951.5:ENST00000546885.5:ENST00000549385.5:ENST00000548201.5:ENST00000548713.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	107	86	2	1.01713	1.05856	1.09999	0.00108165	9.30336e-5	0.0290052	0.00393083
chr17	81846572	81846629	9031586	0	-	0.54386	(0.526,0.57]	chr17	872510	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	83	57	2	1.02374	1.05654	1.08934	0.00292635	0.00196692	0.0671918	0.0502487
chr5	171387863	171387948	3390676	0	+	0.6	(0.57,0.629]	chr5	311055	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	54	2	0.963086	1.053333	1.14358	0.00939254	0.00140156	0.154778	0.0372364
chr6	165951513	165951613	4270269	0	-	0.54	(0.526,0.57]	chr6	386948	12	INTRON	INTRON	PDE10A	ENSG00000112541.19	ENST00000678161.1:ENST00000366882.7:ENST00000672902.1:ENST00000676766.1:ENST00000647768.3:ENST00000672859.1:ENST00000685292.1:ENST00000649882.1:ENST00000690845.1:ENST00000535229.1:ENST00000693476.1:ENST00000687318.1:ENST00000649754.1:ENST00000689721.1:ENST00000650248.1:ENST00000690869.1:ENST00000691218.1:ENST00000444465.1:ENST00000693627.1:ENST00000693427.1:ENST00000455853.1:ENST00000581850.1:ENST00000584179.1:ENST00000584911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	182	124	2	0.902836	1.053203	1.20357	1.81307e-4	9.39129e-7	0.00688171	6.60694e-5
chrX	71296948	71297047	10156137	0	+	0.555556	(0.526,0.57]	chrX	1012334	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	624	422	2	0.920818	1.049839	1.17886	3.58759e-11	1e-12	5.11496e-9	1.73382e-10
chr17	43273255	43273355	8938194	0	-	0.59	(0.57,0.629]	chr17	859071	431	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2530	1985	2	0.959316	1.039433	1.11955	1e-12	1e-12	1.73382e-10	1.72912e-10
chr1	108698752	108698827	249791	0	+	0.426667	(0.424,0.459]	chr1	25273	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1:ENST00000485810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	112	55	2	0.885262	1.038021	1.19078	0.00812274	5.13064e-4	0.14259	0.0164787
chr3	168032602	168032685	2482869	0	-	0.554217	(0.526,0.57]	chr3	238195	2	CDS	CDS:EXON_MRNA	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	124	83	2	1.03001	1.030275	1.03054	9.77075e-4	1.74115e-4	0.0276375	0.00673415
chr15	34533359	34533458	8126564	0	-	0.50505	(0.49,0.526]	chr15	751901	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	67	44	2	0.932703	1.0297815	1.12686	0.0100798	0.00673367	0.170122	0.117604
chr17	7893474	7893569	8642383	0	+	0.631579	(0.629,1]	chr17	817448	3	CDS	CDS:EXON_MRNA	CHD3	ENSG00000170004.18	ENST00000380358.9:ENST00000672274.1:ENST00000672838.1:ENST00000330494.12:ENST00000358181.8:ENST00000452447.1:ENST00000572579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	80	89	2	0.765789	1.0297645	1.29374	0.00711976	8.1405e-5	0.125917	0.00346706
chr17	43261257	43261357	8938074	0	-	0.62	(0.57,0.629]	chr17	859071	311	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	68	53	2	0.990487	1.0170535	1.04362	0.00675169	0.00420744	0.117912	0.0851246
chr7	26196556	26196651	4661321	0	-	0.410526	(0.392,0.424]	chr7	418793	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	203	88	2	0.798857	1.0163535	1.23385	0.00376398	2.8235e-6	0.0816719	1.75466e-4
chr11	65424570	65424670	6415886	0	+	0.39	(0.36,0.392]	chr11	577189	19	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	121	47	2	0.980021	1.0116005000000001	1.04318	0.00488315	0.00392867	0.0964485	0.0816719
chr12	103937721	103937806	7001200	0	+	0.294118	[0,0.32]	chr12	639903	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	168	58	2	0.989505	1.0113275	1.03315	0.00268487	9.04144e-4	0.063945	0.0255147
chr19	49490231	49490301	9374818	0	+	0.471429	(0.459,0.49]	chr19	913218	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	96	56	2	0.970014	1.005952	1.04189	0.00466068	0.00217873	0.0939814	0.0533838
chr17	45515304	45515379	8946975	0	-	0.426667	(0.424,0.459]	chr17	860724	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC37A4P	ENSG00000214425.9	ENST00000581296.2:ENST00000686949.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	130	62	2	0.994488	1.001029	1.00757	0.00268465	0.00108874	0.063945	0.0302231
chr11	72018241	72018300	6636228	0	-	0.542373	(0.526,0.57]	chr11	608074	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	116	76	2	0.802732	0.992911	1.18309	0.00665014	1.0124e-4	0.116316	0.00420305
chr17	81511985	81512069	9030098	0	-	0.547619	(0.526,0.57]	chr17	872204	2	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	161	105	2	0.927565	0.9897425	1.05192	2.64344e-4	7.43453e-5	0.00935689	0.0032069
chrM	1410	1505	10480396	0	+	0.526316	(0.526,0.57]	chrM	1038986	9	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2116	1370	2	0.918323	0.9879665	1.05761	1e-12	1e-12	1.73382e-10	1.72912e-10
chr15	90980883	90980958	8273882	0	-	0.493333	(0.49,0.526]	chr15	768668	1	CDS	CDS:EXON_MRNA	PRC1	ENSG00000198901.14	ENST00000394249.8:ENST00000361188.9:ENST00000442656.6:ENST00000556982.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	96	62	2	0.885884	0.986127	1.08637	0.00867555	7.16382e-4	0.143717	0.0217742
chrM	3111	3207	10480413	0	+	0.416667	(0.392,0.424]	chrM	1038987	16	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	3820	1598	2	0.975943	0.985623	0.995303	1e-12	1e-12	1.73382e-10	1.72912e-10
chr5	157813144	157813227	3648045	0	-	0.421687	(0.392,0.424]	chr5	332186	2	CDS	CDS:EXON_MRNA	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	108	45	2	0.928108	0.9764440000000001	1.02478	0.00743685	0.00676434	0.131337	0.118126
chr1	41006050	41006094	121821	0	+	0.5	(0.49,0.526]	chr1	14313	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000372616.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6:ENST00000464283.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	130	80	2	0.729789	0.9659745	1.20216	0.00653963	1.34803e-4	0.116975	0.00532882
chr17	1400046	1400110	8836707	0	-	0.59375	(0.57,0.629]	chr17	843212	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1:ENST00000576854.1:ENST00000498643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	71	53	2	0.940337	0.9517115	0.963086	0.00939254	0.00676226	0.154778	0.1204
chrM	11645	11743	10480493	0	+	0.5	(0.49,0.526]	chrM	1039008	9	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	84	52	2	0.894545	0.938099	0.981653	0.00803594	0.00764335	0.135042	0.134851
chr19	10559612	10559708	9434755	0	-	0.59375	(0.57,0.629]	chr19	925293	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KRI1	ENSG00000129347.21	ENST00000652042.1:ENST00000312962.12:ENST00000536689.5:ENST00000537363.5:ENST00000618579.1:ENST00000478863.5:ENST00000612875.4:ENST00000539027.5:ENST00000536714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	153	113	2	0.73392	0.9225700000000001	1.11122	0.00539455	4.96728e-6	0.102723	2.97601e-4
chr17	47650162	47650244	8734303	0	+	0.743902	(0.629,1]	chr17	830028	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	86	90	2	0.827804	0.9096599999999999	0.991516	0.0036365	0.00144274	0.0794014	0.0382827
chr9	76571905	76572005	5405082	0	+	0.55	(0.526,0.57]	chr9	482528	57	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	127	77	2	0.795461	0.8991855	1.00291	0.00406755	0.00124225	0.0824344	0.0328597
chr1	244855903	244855982	910811	0	-	0.481013	(0.459,0.49]	chr1	100838	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000639628.2:ENST00000440865.2:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	201	108	2	0.794697	0.893745	0.992793	0.00133826	6.01357e-5	0.0357109	0.00273085
chr6	33276175	33276267	3758381	0	+	0.576087	(0.57,0.629]	chr6	342910	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	81	58	2	0.86948	0.8886495000000001	0.907819	0.0107083	0.0070903	0.174862	0.123291
chr7	44014595	44014689	4708773	0	-	0.648936	(0.629,1]	chr7	421660	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ENSG00000272655	ENSG00000272655.2	ENST00000326391.6:ENST00000418424.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	244	249	2	0.790807	0.880636	0.970465	1.6072e-5	2.66214e-7	8.32281e-4	2.09843e-5
chr1	41007497	41007545	121838	0	+	0.541667	(0.526,0.57]	chr1	14321	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTPS1	ENSG00000171793.17	ENST00000696107.1:ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.2:ENST00000650634.2:ENST00000696108.1:ENST00000649124.2:ENST00000498694.2:ENST00000696070.1:ENST00000648801.1:ENST00000470271.6:ENST00000696109.1:ENST00000372616.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6:ENST00000464283.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	162	97	2	0.853901	0.869012	0.884123	0.00185104	4.56683e-4	0.0459841	0.0150584
chr5	141319282	141319377	3624279	0	-	0.452632	(0.424,0.459]	chr5	329089	3	CDS	CDS:EXON_MRNA:INTRON	TAF7	ENSG00000178913.9	ENST00000686518.1:ENST00000624699.1:ENST00000313368.8:ENST00000624761.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	145	63	2	0.84036	0.8672995	0.894239	0.00479197	0.00477494	0.0961769	0.0917585
chr16	1962470	1962570	8492198	0	-	0.61	(0.57,0.629]	chr16	795417	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	97	67	2	0.750841	0.8656630000000001	0.980485	0.0100012	0.00429827	0.170122	0.0867442
chr5	178204684	178204760	3404333	0	+	0.842105	(0.629,1]	chr5	312626	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	90	91	2	0.730071	0.858927	0.987783	0.0109761	8.4973e-4	0.178871	0.0245129
chr17	7314958	7315052	8860769	0	-	0.670213	(0.629,1]	chr17	847481	1	CDS_START	CDS_START:CDS:EXON_MRNA	GPS2	ENSG00000132522.16	ENST00000570780.5:ENST00000571569.5:ENST00000572172.5:ENST00000389167.9:ENST00000380728.7:ENST00000571697.5:ENST00000577040.2:ENST00000572363.5:ENST00000571098.5:ENST00000573059.5:ENST00000572707.5:ENST00000574201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	84	85	2	0.816498	0.8559475	0.895397	0.00726364	0.00267793	0.128342	0.0638219
chr8	80064477	80064565	5200544	0	-	0.522727	(0.49,0.526]	chr8	465829	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523319.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000522364.5:ENST00000519250.5:ENST00000518500.1:ENST00000520795.5:ENST00000520741.1:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	123	72	2	0.822922	0.853855	0.884788	0.00522084	0.00338703	0.0992178	0.0742862
chr7	100884459	100884552	4492896	0	+	0.569892	(0.526,0.57]	chr7	404690	2	CDS	CDS:EXON_MRNA	SRRT	ENSG00000087087.20	ENST00000611405.5:ENST00000614484.4:ENST00000618262.4:ENST00000618411.4:ENST00000474896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	171	100	2	0.647217	0.8284285	1.00964	0.0107285	8.31233e-5	0.17534	0.00354938
chr1	119147010	119147069	273648	0	+	0.491525	(0.49,0.526]	chr1	28322	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000425884.6:ENST00000688395.1:ENST00000440150.5:ENST00000670000.1:ENST00000418015.1:ENST00000413531.5:ENST00000667936.1:ENST00000685192.1:ENST00000445565.2	lncRNA	lncRNA	lncRNA	lncRNA	132	75	2	0.739867	0.8092605	0.878654	0.00986379	0.002599	0.16223	0.0622268
chr9	76571705	76571805	5405080	0	+	0.63	(0.629,1]	chr9	482528	55	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	156	150	2	0.669573	0.7895905	0.909608	0.00306197	8.65687e-5	0.0699449	0.00368623
chr11	65500266	65500365	6416244	0	+	0.292929	[0,0.32]	chr11	577204	27	EXON_LNCRNA	EXON_LNCRNA:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2:ENST00000610481.1	lncRNA	lncRNA	lncRNA	lncRNA	3761	1103	2	0.776963	0.7834905	0.790018	1e-12	1e-12	1.73382e-10	1.72912e-10
chr6	136411619	136411697	4209463	0	-	0.641026	(0.629,1]	chr6	383029	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	MAP7	ENSG00000135525.19	ENST00000616617.4:ENST00000618822.4:ENST00000432797.6:ENST00000617204.4:ENST00000354570.8:ENST00000454590.5:ENST00000544465.5:ENST00000438100.6:ENST00000611373.1	protein_coding	protein_coding	protein_coding	protein_coding	97	93	2	0.70754	0.7824724999999999	0.857405	0.0114408	0.00274714	0.183354	0.0651004
chr11	65500067	65500167	6416242	0	+	0.38	(0.36,0.392]	chr11	577204	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2	lncRNA	lncRNA	lncRNA	lncRNA	21221	6846	2	0.721307	0.752408	0.783509	1e-12	1e-12	1.73382e-10	1.72912e-10
chr9	98005058	98005153	5446083	0	+	0.557895	(0.526,0.57]	chr9	486185	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	134	74	2	0.744415	0.7522314999999999	0.760048	0.0124931	0.00610449	0.190561	0.113024
chr10	119050520	119050597	6271895	0	-	0.402597	(0.392,0.424]	chr10	561040	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	236	84	2	0.659951	0.7499625	0.839974	0.00972225	0.00144858	0.166463	0.0377086
chrM	1505	1601	10480397	0	+	0.395833	(0.392,0.424]	chrM	1038986	10	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	511	176	2	0.682036	0.711781	0.741526	1.86511e-4	1.14477e-4	0.00695608	0.00462085
chr11	65499075	65499175	6416232	0	+	0.38	(0.36,0.392]	chr11	577204	15	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000688218.1:ENST00000689729.1:ENST00000693503.1:ENST00000692086.1:ENST00000685846.1:ENST00000690116.1:ENST00000544868.2:ENST00000617791.1:ENST00000620902.1	lncRNA	lncRNA	lncRNA	lncRNA	1104	346	2	0.658372	0.710808	0.763244	1.87784e-6	5.90869e-8	1.22744e-4	5.32509e-6
chr5	32395158	32395231	3432236	0	-	0.493151	(0.49,0.526]	chr5	315721	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	227	119	2	0.684359	0.6991705	0.713982	0.0036826	0.00142526	0.0803963	0.0378598
chr11	65422773	65422872	6415868	0	+	0.616162	(0.57,0.629]	chr11	577189	1	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2	lncRNA	lncRNA	lncRNA	lncRNA	1672	1036	2	0.652643	0.692507	0.732371	6.89526e-12	1e-12	1.0721e-9	1.72912e-10
chr17	43273155	43273255	8938193	0	-	0.39	(0.36,0.392]	chr17	859071	430	INTRON	INTRON	CCDC200	ENSG00000236383.9	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	16338	4406	2	0.47427	0.492861	0.511452	1e-12	1e-12	1.73382e-10	1.72912e-10
chrM	2919	3015	10480411	0	+	0.458333	(0.424,0.459]	chrM	1038987	14	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2387	777	2	0.399087	0.45600150000000006	0.512916	3.89974e-5	2.48489e-7	0.00185993	1.99472e-5
chr11	65504730	65504829	6416289	0	+	0.40404	(0.392,0.424]	chr11	577204	72	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000618132.1:ENST00000613376.1:ENST00000610851.1	lncRNA	lncRNA	lncRNA	lncRNA	7806	2240	2	0.4401	0.4422735	0.444447	1.58609e-9	7.74768e-10	1.81226e-7	9.26121e-8
chrM	2438	2535	10480406	0	+	0.391753	(0.36,0.392]	chrM	1038987	9	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	3449	842	2	0.328366	0.353313	0.37826	3.41979e-4	8.20465e-5	0.0119497	0.00349388
chr11	65501655	65501754	6416258	0	+	0.444444	(0.424,0.459]	chr11	577204	41	EXON_LNCRNA	EXON_LNCRNA	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1	lncRNA	lncRNA	lncRNA	lncRNA	4977	1503	2	0.289881	0.3460785	0.402276	1.81051e-4	3.01727e-7	0.0069054	2.34323e-5
chr11	65500365	65500464	6416245	0	+	0.484848	(0.459,0.49]	chr11	577204	28	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2:ENST00000610481.1	lncRNA	lncRNA	lncRNA	lncRNA	33727	12311	2	0.326451	0.3446245	0.362798	1.15237e-9	9.81204e-12	1.35089e-7	1.51534e-9