Annotated intergenic regions from Bacillus species with conserved operons (see Methods). All sequences are shown in the direction with upstream gene on the left (sigB gene start codon on the right). Annotations: RNA_struct: RNAfold minimum free energy configuration for the region. stop/start: stop and start codons of upstream/downstream genes respectively are shown. sigB_prom: putative -35/-10 and +1 for sigB promoter (using the B. subtilis consensus GTTTAA/GGGWAW. Regions marked by * were manually corrected from the automated Smith-Waterman search. put_SD_seq: putative Shine-Dalgarno sequence identified by region upstream of the start codon with highest affinity to duplex TCACCTCCT. terminator: any intervening intrinsic terminator identified [from the list of Johnson et al, 2020 (PMID: 32848247)]. # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: citA_yhdF >GCF_000009045.1 Bacillus subtilis sequence TCCCGAGGAAGTTCTTTCATAACATATTTTGGCGTTTATTCATTTCTGTCGTGTGGTAACGTTCAGTATCAACCACATGTCTAGGAGTGATGAATGTGAACCCAATGGACAGACAAA RNA_struct (((...))).(((..(((((........((.((((((((.((((((((.((((((((..............)))))))).).))))))))))))))).))....)))))..)))... (-28.50) stop/start -------------------TAA-------------------------------------------------------------------------GTG------------------- sigB_prom ---------------------------------GTTTAT-------------GTGGTA--------T-------------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------AGGAGTGA--------------------------- terminator --------------------------------------------------------------------------------------------------------------------- None found >GCF_000196735.1 Bacillus amyloliquefaciens sequence TGAAACGGCTCAGCCGCTTTAAGCCTGGCATATTTGTCCGTTTAGCTCTCCGCACTGCGTGGTATCGTCTCAGTAATACCAATTGCAGGAGTGTGAGAATATGAATCCGATGGACAGACAAA RNA_struct ((((.((((...)))).))))...........((((((((((((..(((((((.(((((((((((..........))))))..)))))..))).))))...)).....)))))))))).... (-33.60) stop/start -------------------TAA------------------------------------------------------------------------------ATG------------------- sigB_prom ---------------------------------------GTTTAG-------------GTGGTA--------G------------------------------------------------- put_SD_seq ---------------------------------------------------------------------------------------GGAGTGTGA-------------------------- terminator -------------------------------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence TACCGGAGCGCTCACCGTATAGTAAAAGCAGCACATTCACACCGTTTAATCCCGCCCATAAGGTGGTAACGTTTACTATCATTATGTGCAGGAGTGATTTTAATATGAACCCTATGGACAGACAAA RNA_struct ...(((........)))(((((..............((((.........(((.((.(((((((((((((...)))))))).))))).)).)))))))..............))))).......... (-22.00) stop/start -------------------TAG----------------------------------------------------------------------------------ATG------------------- sigB_prom* -------------------------------------------GTTTAA--------------TGGTAA---------T----------------------------------------------- put_SD_seq -----------------------------------------------------------------------------------------AGGAGTGA----------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------ None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: dctB_ydbD >GCF_000009045.1 Bacillus subtilis sequence GGAGCTGCGAAAAGATTCATAGTTCCCATCTCGATACGCTGTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAAACGAAAAAGGAGATGGGTACATGTTTAAGCACACAAAAATGC RNA_struct .((((((.(((....))).))))))(((((((.........((((((((((((((((.....................)))))))))))))))).)))))))............(((........))) (-30.20) stop/start -------------------TAG------------------------------------------------------------------------------------ATG------------------- sigB_prom* -----------------------------------------------GTTTAT------------CGGAAA-------A------------------------------------------------- put_SD_seq ---------------------------------------------------------------------------------------------AGGAGATGG-------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence GTCTTACGAAACTGATTCGTAGCATGTTTTGCCGTCCCGATACTCTCTTTTTCGTTTGATGCATGTATCTGAGGGGGATATAGAGAGTGATAAAACGAAAAAGGAGATGGGGATACATGTTCAAACATACAAAGATGC RNA_struct ....((((((.....))))))((((((......(((((.((.(((.(((((((((((....(((((((((.....)))))).....)))...)))))))))))))))).))))))))))).................. (-39.70) stop/start -------------------TAG----------------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------------------------GTTTGA--------------GGGGAT--------T-------------------------------------------------- put_SD_seq -----------------------------------------------------------------------------------------------------AGGAGATGG---------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------------------ None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: glxK_yxaB >GCF_000009045.1 Bacillus subtilis sequence GAAAACGATGTTTCTGATATAGCCGATGCACATGCCAATGCATAGCCATCCTTCTTTTTGGGTAGAGACAGTTAACACACAATGAGGAATTCATCCCAGAAGGAGGACGCAGATATGACTGTACAAGAAATCAAAG RNA_struct .........((((((..(((((..((((...((((....))))...))))((((((((((((..(((....(((........)))....)))..))))))))))))............)))))..))))))..... (-29.00) stop/start -------------------TAG--------------------------------------------------------------------------------------------ATG------------------- sigB_prom ---------------------------------------GCATAG--------------GGGTAG--------A-------------------------------------------------------------- put_SD_seq --------------------------------------------------------------------------------------------------GAAGGAGGA----------------------------- terminator ---------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence CAGAAATGCAAATCGTATATAAAGCCCTTTATGCGTTTTTAAGTCAAACACACACACGCGCATACCCCTCCTCCTTTCGGGGTACAGAACAATAAGATAATCAGCCCAGAAGGAGGACATCAGTATGACCGTACAAGAAATCAAAG RNA_struct .(((((((((.....................)))))))))...............(((..(((((...(((((((((..((((....................)))).))))))))).....)))))..))).............. (-30.50) stop/start -------------------TAA------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom* -----------------------------------------------------------GCATAC-------------GGGTAC--------A----------------------------------------------------- put_SD_seq ------------------------------------------------------------------------------------------------------------GAAGGAGGA----------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------------------------- None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: prs_ctc >GCF_000009045.1 Bacillus subtilis sequence AGTCAGCTATCTGTTCAGCTAAACCATTTTTCGAGGTTTAAATCCTTATCGTTATGGGTATTGTTTGTAATAGGACAACTAAAACGACAAGAGGATGGTGCTGAATATGGCAACTTTAACGGCAAAAG RNA_struct .....(((((..(((((((((((((.........)))))).((((((.(((((.(((...((((((......))))))))).)))))...))))))...))))))))))))................. (-31.40) stop/start -------------------TAA------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------GTTTAA--------------GGGTAT--------A---------------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000005825.2 Bacillus pseudofirmus sequence AGTAAGTAAGCTATTTGATTAATAGAAAGATTGTACAGCGGAATTTTTTGCAAGTGTAATGCTGTTTAAATGAGATAATTTCATAAAAGCCGTTTTAAATCGATGTAATTAGGGAACAAAGTATATAGACGCAATGGAATCTAATTAGAGGTGATAATGATGGCAACAACATTACAAGCTA RNA_struct .((((((...(((((.....)))))....))).))).(((((....)))))...(((((((.((((...((((((...))))))....((((((....((((.(.((((((((...((..((........))..))...)))))))).)..))))...)))))))))).)))))))..... (-33.10) stop/start -------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -------------------------------------------------------------------------------------------GTTTTA--------------GGGAAC--------T------------------------------------------------------- put_SD_seq --------------------------------------------------------------------------------------------------------------------------------------------------AGAGGTGA--------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000009825.1 Bacillus clausii sequence GGTGTCAACGCTTTTTGATTAAGGTTAGCTGGTGATGTCGGAAGGTCACGGGAAAAAACGATCCATGTCTGTTTGAAAACCAAGCTATGAGGGAACACATGTAAGTAGTTGTGTTAAATCTTACAGTAGAGGTGAAAGATCATGACCGTATTGAATGCTCGTG RNA_struct ...(((..(((((((....((((((((((((((....(((((.((.((..(((........))).)).)).)))))..))).)))))......((((((..........))))))..))))))....)))))))...)))(((((.(((.....))).))))) (-33.30) stop/start -------------------TAA-----------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom ----------------------------------------------------------------------GTTTGA--------------GGGAAC--------G---------------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------------------------------------------AGAGGTGAA--------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000011645.1 Bacillus licheniformis sequence TGTCAGCTTCCTGTTCGATTAATTTGCTGATTCTGGTTTAAAGTTTTGTCGTTATGGGAATGGTTTTAGAAAGACCAATCTAACGATAGGATGGTGCTGAAAATGGCAATTTTAAAAGCGGAAG RNA_struct ......(((((.(((...((((.((((((.(((.(((.....(((((((((((...(((.(((((((...))))))).))))))))))))))...))))))..))))))..)))).)))))))) (-30.70) stop/start -------------------TAA--------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------GTTTAA--------------GGGAAT--------A------------------------------------------------------ put_SD_seq ---------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator ---------------------------------------------------------------------------------------------------------------------------- None found >GCF_000177235.2 Bacillus cellulosilyticus sequence TGTAAGCCGATTGTTTAATTAAATTCATTTTTTTCATAAAAAGTAAGACGGGCGTTTCAAAACACTTATTTTTGGGAAAACATAATAAAAGAACCAAAAAAAGGATGAGGTGGTTTGAAACATGGCAACTTTACAAGCAAATA RNA_struct ((((((((..................(((((((....))))))).........(((((((..(((((((((((((..................))))).....))))).)))..)))))))..)))....)))))........ (-21.30) stop/start -------------------TAA---------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------------------------GTTTCA--------------GGGAAA--------A------------------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------------------------------GAGGTGGT----------------------------- terminator ----------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000196735.1 Bacillus amyloliquefaciens sequence TGTCAGCTATTTATTCAGCTAAACTGAAAGTTTAAGGTTTAAATTCCGGCTATCGTGGGTATTGTTCTAATAGGACGATAAAACGATAATTAGGATGGTGCTGAATATGGCAACTTTAAAAGCAAATG RNA_struct .....((((..((((((((((((((..........))))))...(((...((((((...(((((((((...)))))))))..))))))....)))....))))))))))))................. (-30.80) stop/start -------------------TAA------------------------------------------------------------------------------------ATG------------------- sigB_prom ------------------------------------GTTTAA--------------GGGTAT--------T--------------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000294775.2 Bacillus oceanisediminis sequence TGTCAGCACTCTGTTTGATTGATAGGTAATTAAATAACTTTTCCAGGCTTGCTGTAAAGCAAGCCTGGTCTGCGTTCTTTTTAAAAATAGCATATGAAAAAAACAAAAACGTTTAGACTTCCTCATTTTAGGGCATTTTTTTATATAGACGAGAATTTTTCAAAATGAGGAAGGGGACGTATTTATGACAGCTGTATTGCAAGCAA RNA_struct (((((......((((((((((.....))))))))))......(((((((((((....)))))))))))..((((((((......................((((......))))...((((((((((((.(((.(..(((((........)))))..))))))))))))))))))))))))....)))))(((........))).. (-57.00) stop/start -------------------TGA------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom --------------------------------------------------------------------------------------------------------------GTTTAG--------------GGGCAT--------A------------------------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGAAGGG------------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000473245.1 Bacillus infantis sequence TGTCAGCACTCTGTTCGATTAATTCAGCAATATAAGAGGCTTGCCGCAGGGCAAGCCTTTTATGCTATACTCATGTTATAAAACTGCTTGCAGGCAAATGTGTTTAAAACATCTCCATTTAGGGCATTTTTAAAAAGATAAGTATGCAGTCCATTTGCATGGTTCATTTTAATTACACCTTAAATTGAGGAAGGGGACGTTTTTTATGAGCACTGTACTTCAAGCCA RNA_struct .(((((((...)))).)))......((((...(((((((((((((....)))))))))))))))))...................(((((.(((((...(((((((((((.(((((((((((((..(..((((((.((....(((((((.....)))))))..)).))))))..)..)))))))).......))))).))))....)))))))))).)).))))).. (-64.00) stop/start -------------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------------------------------------------------------------------------GTTTAA--------------GGGCAT--------A------------------------------------------------------------------------------------------- put_SD_seq ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGAAGGG-------------------------------- terminator ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000724485.1 Bacillus methanolicus sequence TGTCAGCACACTTTTTGATTAATTAATTAAATAAAAAGCGTATGGCTTGCTAATTTAAGCAAGCCTTGCTCCGTTTTCATATTTTCAATGAGCCGGAAAAGAATTCAGTATACAAACGTTTAGACTTTCCTGATTTAGGGTATTTTTATATATAGACTTTGACTTTAGATTAGGAGGGTGACGTTTTATGAGTGCTGTTTTACAAGCAA RNA_struct ...((((((.(((((((.((((....)))).))))))).(((.((((((((......)))))))).)))((((..(((((.......))))).))))...........((((.(((((((...((((((((((((((((((...((((....)))).....))))))))))))))))))))))))))))).))))))............ (-60.90) stop/start -------------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom ---------------------------------------------------------------------------------------------------------------------GTTTAG--------------GGGTAT--------A--------------------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGTGA---------------------------- terminator ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_000832985.1 Bacillus megaterium sequence AGTTAGTACATTATTTGATTGATAAACAGAACCTCTTTCCATTTGGAAAGAGGTTTTTTTGAAAAAAATTTAAATGTGCCAACCCTTGATTTTAAAGCGCTTTGGATGGAATGCACAAAGATATATTACTGTTCAAACTGGGTTTCATGTTTAGCAACCTTCTAAAAAGGGTACATTTTAAGTAGAAAACATACTGGAAGGTGAATAAAATGAGTATTTCAATTCAAGCAA RNA_struct .(((.(((((((....((((....((.(((((((((((((....))))))))))))).))......))))..)))))))..((((((..(((..(((.(((..(.(((((((.((....((((......)))).....)).))))))).)..)))...)))..))))))))).((((((.((((.......))))..)))))).......(((((......)))))))).. (-51.10) stop/start -------------------TGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom ----------------------------------------------------------------------------------------------------------------------------------------------------GTTTAG--------------GGGTAC--------T------------------------------------------------ put_SD_seq ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGGTGA--------------------------- terminator ------------------------------ACCTCTTTCCATTTGGAAAGAGGTTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >GCF_001050115.1 Bacillus smithii sequence TGTCAGCATGCTGTTTGATTAATCCATCATCGAAAATAGATCTTGCGGATGGTATGGATTCCAAAAATAAGGAGCAAAAGAATGAAGGGTGTGTTCGAAGCAATAATGGGCGGCTTTCCATACATGTTTTTCATGTAATGACCATGTTTAAAGATTGCCTGTTTAGGCAATTCATATAAAAGGGTTTTTACATTAAAAAACTAGAACGGGAGGATGTCTAATATGAGTGCAGTACTAGAAGTGA RNA_struct ..((((((((((.(((.....((((((((((................))))..))))))(((........)))..........))).)))))))).)).((((((.((((((.((((((......((((((.((((((.((((.........((((((((....))))))))..........)))).))))))..))))))......)))))).)))))).)))...))).............. (-55.70) stop/start -------------------TAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -------------------------------------------------------------------------------------------------------------------------------------------------GTTTAA-------------AGGCAA--------A----------------------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGAGGA------------------------------ terminator ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_001578205.1 Bacillus pumilus sequence TGTGAGCTACCTTTTCAGCTAATTTTCTGATTGAAAAAGGCCCTAGGCATCAAGCTTGGGGTCTTTTTGCTTTCATCATTCTTGGCAAATAGGTTTAAAATGATTTGGTTATGGGTAATTATGAGAGTAGTGACAAAAAAGAAATAGGATGGTGCTGAATATGGCAACTTTAAAAGCAAATA RNA_struct .....((((....((((((.....(((((....(((((((((((((((.....)))))))))))))))((((((((.(((((((.....((((((......))))))....)))).))).))))))))................)))))....))))))..))))................. (-44.80) stop/start -------------------TAA------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom --------------------------------------------------------------------------------------------GTTTAA--------------GGGTAA--------G------------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator --------------------------------------GGCCCTAGGCATCAAGCTTGGGGTCTTTTT------------------------------------------------------------------------------------------------------------------ >GCF_001721685.1 Bacillus beveridgei sequence CGTCAGCAATCTGTTTGACTGATAGAAGAAATGTGAATTTCGGGGTTTAGTTGCTCACGAAAGAGGAAACATGATATGATATGAAAAAATGATGAGGTGATTTTGACATGGCAACAGTATTGAAAGCAG RNA_struct .((((((((.....))).))))).......((((...(((((((((......)))).)))))......))))(((((..((((..(((((.((...)).)))))..))))......)))))........ (-20.90) stop/start -------------------TGA-------------------------------------------------------------------------------------ATG------------------- sigB_prom --------------------------------------------GTTTAG-------------AGGAAA--------G--------------------------------------------------- put_SD_seq ---------------------------------------------------------------------------------------------GAGGTGAT---------------------------- terminator --------------------------------------------------------------------------------------------------------------------------------- None found >GCF_001889165.1 Bacillus weihaiensis sequence TGTAAGCTTACTTTTTGATTAAAACATAGACAGTCCAAATGATGAATCGTAAGGTAGGAGACCTATTTTGTATAGCAAAATAGGTCTTTTTGTACACTCTTTTCGTTCTCTTTATTGTCACTGTTCGTCATAGATTTTCAGCAGGCTATTAGTTCTTAAAGGCCTTCTAATAAAATTCTTTCAGTTATCCTTAAGGCACTAAATTCATATCTGATGTTTAGTCGTATCTAGTTATGGGAAAAATACTAGACAAGAAACCAATATGTTTTAGGAAGGTGTAACGATGACAACATTACAAGCAGTTG RNA_struct .....((((......((((...((((..((((((......((((((..(....((((((((((((((((((...)))))))))))))))...)))...)..))))))......))))))..)))).))))..((((((.((.(((((.(((.....))).))))).))...))))))......(((((((((...((((((((((((....))).))))))).)).((((((............))))))...(((((......)))))...)))).)))))((((....))))..))))..... (-62.70) stop/start -------------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAG--------------GGGAAA--------A------------------------------------------------------- put_SD_seq ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGGTG--------------------------- terminator --------------------------------------------------------GGAGACCTATTTTGTATAGCAAAATAGGTCTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >GCF_002024265.1 Bacillus flexus sequence AGTGAGCACACTATTCGATTAATTTGTTGAAAAGAAGCTTCTCTCCTTGTGAGAGAAGCTTCTTTTTTATTGTAATCATAGCACTAATACAAATTAATTTGATTTTGAGGTTTAATCATTTTCTAATTAGGGTACATTTTAATATAGAAAACATACTGGAAGGTGAAGAATATGAGTATTTCAATTCAGGCAA RNA_struct ..(((((.((..(((.(((((((((((.(((((((((((((((((.....)))))))))))))))))...(((.......))).....))))))))))).)))..))..)))))....(((((((((((((......)))))).)))))))....(((((...(((((.((....)).))))).))))).... (-45.80) stop/start -------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -------------------------------------------------------------------------------------------------------------GTTTAA--------------GGGTAC--------A------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGGTGA--------------------------- terminator ---------------------------------GAAGCTTCTCTCCTTGTGAGAGAAGCTTCTTTTTT----------------------------------------------------------------------------------------------------------------------------- >GCF_002109385.1 Bacillus krulwichiae sequence TGTAAGTAAATTATTTGATTAAGATCTAAAGAAAAAAAGGTTGCACTTTACCTTTTTTTCTTTAGATCGAAGCAATGAGCGGATCCGCCGCAAACGAATTTAAGTCTTTTTTGGCGGTCTTCCCAAAAAGACGCGCGGCGAGAGAAGCCATTGCCACCAACCAAACATCAAGCACTGATAGAGTGTGAAGGTATGAGGAAAGGTTACAAAAAAAGGTTGCACTTTACCTTTTTTTCTTTAGATCGAAGCAATTTCTATTTCACTTCAAAAGGTTTAAAATTTCTCTATAAGGGAACATATGTATAGGGAGAACTTTAAAACTATTATGAGGTGATATTCATGGCTACAGTTTTAAAAGCTA RNA_struct ....((.(((((.(((((((..(((((((((((((((((((........)))))))))))))))))))...((((((.((...((((((((............((((((((.((.(.....)))))))))))..)))))).))...)))))))).(((..((..(.(((..(((((.....)))))...))).)..))...)))...((((((((((........)))))))))).....)))))))..)))))))...((((((((((.(((((.(((((((((((((............))))))))))..))).))))).)).))))))))......(((((...........))))) (-103.30) stop/start -------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------------- sigB_prom -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAA-------------GGGAAC--------A-------------------------------------------------------- put_SD_seq ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGATA------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- None found >GCF_002157855.1 Bacillus horikoshii sequence CGTTAGTACTTTATTTGATTAATCGTAAGAATCATGTTTAACCTTCCGTAAATTGGGGAAATTGAATGAGAGACAAGTATTTTATTTTCCCAGGAAGGTGATAAGAATGTCAGTATTACATGCAAATG RNA_struct ((((((((((.....(((((.........)))))......(((((((......(((((((((.(((((.........))))).))))))))))))))))((((....))))))))))).)))...... (-26.10) stop/start -------------------TAA------------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------GTTTAA-------------GGGGAA--------A----------------------------------------------------------- put_SD_seq --------------------------------------------------------------------------------------------GGAAGGTGA--------------------------- terminator -------------------------------------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence TGTCAGCTTTTTATTCAGCTAATTCGGCCGCCGATGTTTAAATCCTAATCGTTATGGGTATTGTTCTATTAGGACGAGAAAACGATAATAGGATGGTGCTGAATATGGCAACTTTAAAAGCAAAAG RNA_struct .....((((((......(((((((((((.(((.........((((((((((((.......(((((((...)))))))...))))))..)))))))))))))))).))))......))))))..... (-33.90) stop/start -------------------TAA----------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------GTTTAA--------------GGGTAT--------T-------------------------------------------------------- put_SD_seq -----------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------ None found >GCF_900093775.1 Bacillus glycinifermentans sequence TGTCAGCTTCCTGTTCGATTAATTTGCTGATTCTGGTTTAAAGTTTTGTCGTTATGGGTATGGTTTTAGAAAAACCAATCTTACGATAGGATGGTGCTGGATATGGCAATCTTAAAAGCGGAAG RNA_struct ......(((((.(((...((((.(((((...((((((.....((((((((((...((((.(((((((...))))))))))).))))))))))...))))))...)))))..)))).)))))))) (-34.20) stop/start -------------------TAA--------------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------GTTTAA--------------GGGTAT--------A------------------------------------------------------ put_SD_seq ---------------------------------------------------------------------------------------AGGATGGTG---------------------------- terminator ---------------------------------------------------------------------------------------------------------------------------- None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: yflG_yflH >GCF_000009045.1 Bacillus subtilis sequence GATTATCCTGACGAAACTGTAAAACACATTCCGGGCTTCCGGCAGGTTTAACCTCCTCCAATTGCAGGTAAAGCATCATTATTCTGTACGAGGAGGTCTTGCAATGAACAGAGATCAAGAAAAAA RNA_struct ((((...(((..(((..(((...)))..)))(((....)))(((((....((((((((....((((((..............)))))).)))))))))))))......))).))))......... (-28.50) stop/start -------------------TAA---------------------------------------------------------------------------------ATG------------------- sigB_prom ---------------------------------------------GTTTAA--------------AGGTAA--------T--------------------------------------------- put_SD_seq -----------------------------------------------------------------------------------------GAGGAGGT---------------------------- terminator ----------------------------------------------------------------------------------------------------------------------------- None found >GCF_000196735.1 Bacillus amyloliquefaciens sequence GATTATTTTAACGGCATTGTAATGTTTCATTTCCCTCCCAAACAGGTATACAACAACTAACCCGAAGGAGGGAGACGCATGAAAAAAGATAAAGAACAAA RNA_struct ................((((....((((((((((((((....(.(((............))).)..)))))))))....)))))....))))........ (-17.50) stop/start -------------------TAA--------------------------------------------------------ATG------------------- sigB_prom -----------------------GTTTCA--------------AGGTAT--------T------------------------------------------ put_SD_seq -----------------------------------------------------------------AGGAGGGAG-------------------------- terminator ---------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence GATTATCTTAACAACGCTGTAAAAACAGGTCTGGACATCCGGCATGTTTATCCCCCTTCAAGAACAGGTAAAACAATACTATCGGCGAAGGAGGGATAGTCATCAACAGAGATAAAGAAAAAA RNA_struct ..(((((((.......((((....))))(.((((....)))))(((.((((((((((((..((...((((......)))).))...))))).))))))).))).....)))))))........ (-30.30) stop/start -------------------TAA-------------------------------------------------------------------------------ATC------------------- sigB_prom ---------------------------------------------GTTTAT-------------CAGGTA--------C-------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------------AGGAGGGA--------------------------- terminator --------------------------------------------------------------------------------------------------------------------------- None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: yocL_yocK >GCF_000009045.1 Bacillus subtilis sequence GATCCGTTCAAAAAGGCAGTAGCTCATCTTTCCATCGATGTTTCCATGTTTGACAGAAGGCAAAACGGGAAACAGGATAGAAAGGAGAGGATATACATGGCACTGACAAAAGAACAAA RNA_struct .....((((.......((((..(((.((((((.(((..(((((((.(((((...........)))))))))))).))).)))))).)))............))))......))))... (-27.70) stop/start -------------------TAG--------------------------------------------------------------------------ATG------------------- sigB_prom -----------------------------------------------GTTTGA-------------GGGAAA--------A------------------------------------- put_SD_seq -----------------------------------------------------------------------------------GGAGAGGA--------------------------- terminator ---------------------------------------------------------------------------------------------------------------------- None found >GCF_000196735.1 Bacillus amyloliquefaciens sequence GATCAGGGGGAGAAAGCACTGATCTCCATTGTTTCAGCCGCCTTTTTCGAGGGTATGTAATAACTGTGACTCTAGGAATACAGACGAAAAAGGAGATGCTGAATATGTCATTATCAAAAGAACAGC RNA_struct ((((((.(........).))))))..(((...((((((..(((((((((...((((.....................))))...)))))))))....)))))).)))................... (-27.90) stop/start -------------------TGA----------------------------------------------------------------------------------ATG------------------- sigB_prom ------------------------------GTTTCA--------------GGGTAT--------T------------------------------------------------------------- put_SD_seq ---------------------------------------------------------------------------------------AAAAGGAGATG---------------------------- terminator ------------------------------------------------------------------------------------------------------------------------------ None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: yrbE_csbX >GCF_000009045.1 Bacillus subtilis sequence CACTGAAAAAATCGCTTTTTAATCTAACAGGATTACAATTCAGCAAGCTTGGGTATATACTCCATTGATACTTTAAGTAGGCGGTGGAGAAAATGAATACAGTACATGCTAAAG RNA_struct ..(((((..((((.((.((......)).))))))....)))))..(((.((.((((.((((((((((.((((...))))..))))))))....)).))))....)).))).... (-18.60) stop/start -------------------TAA----------------------------------------------------------------------ATG------------------- sigB_prom ------------------------------GATTAC--------------GGGTAT--------T------------------------------------------------- put_SD_seq ------------------------------------------------------------------------------AGGCGGTGG--------------------------- terminator ------------------------------------------------------------------------------------------------------------------ None found # # # # # # # # # # # # # # # # # # # # # # # # Intergenic region: yvrG_yrvE >GCF_000009045.1 Bacillus subtilis sequence CATCCTTTTTAAAAAACAATAAACATCAAGTGGTTTGGACACCTCTTTGCCGGGAATAACAATATATAGACTGAAGCTAAAGAGGTGTAACACATGGATGCAGTATTGGAAGCAG RNA_struct ................(((((..((((..((((((...(((((((((((((((.................)))..)).))))))))))))).))).))))...)))))....... (-25.30) stop/start -------------------TAA-----------------------------------------------------------------------ATG------------------- sigB_prom --------------------------------GTTTGG-------------GGGAAT--------A------------------------------------------------- put_SD_seq -------------------------------------------------------------------------------AAGAGGTGTA-------------------------- terminator ------------------------------------------------------------------------------------------------------------------- None found >GCF_000196735.1 Bacillus amyloliquefaciens sequence GATTCTTTTTAAAAAAGATTGAGTTTGGACGCCGCTTTGTCGGGAATAACAATAGGAGACTGACAAGCAAAAGAGGTGTTCACACATGGAAGCAGCATTACGAGCAG RNA_struct ...((((((...))))))....((.((((((((((((.(((((................)))))))))......)))))))).)).........((.......)).. (-22.00) stop/start -------------------TGA---------------------------------------------------------------ATG------------------- sigB_prom ----------------------GTTTGG-------------GGGAAT--------G--------------------------------------------------- put_SD_seq ----------------------------------------------------------------------AAGAGGTGT---------------------------- terminator ----------------------------------------------------------------------------------------------------------- None found >GCF_002173495.1 Bacillus atrophaeus sequence GCTCTTGTTCCAAAAAGAGTAAAGCAGGGATCTGTTTCAGGCGCCTCTTTGCAGGGAATAACAATAGCACAACAAACCAGCAGAGAGGTGTTTTTTATAATGGAAGCTGTTTTAGAAGCTG RNA_struct ((((((........))))))(((((((...((((((..((((((((((((((.((.....................)).)))))))))))))).....))))))..)))))))........ (-37.20) stop/start -------------------TAA-----------------------------------------------------------------------------ATG------------------- sigB_prom ---------------------------------GTTTCA--------------GGGAAT--------C----------------------------------------------------- put_SD_seq ----------------------------------------------------------------------------------GAGAGGTGT------------------------------ terminator ------------------------------------------------------------------------------------------------------------------------- None found