# Included in this file are the initial sequence alignment of TLS(His) obtained from R-fam, the manually extended alignment of TLS(His) to include the entire TLS(His), and all 157 TLSHis sequences identified through Infernal searching, the consensus secondary structure, and consensus sequence. # R-fam: TLS-PK2 (RF01077) AB354955.1/1390-1455 GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAA-GCGA AB083196.1/6281-6347 GUGUCUUGGAGCGCGCGGAGUAAACAUAUAUGGUUCAUAUAUGUCCGUAGGCACGUAAAAAAAGCGA EF375551.1/6292-6357 GUGUCUUGGUUCGCGCGGGUCAAGUGUAUAUGGUGCAUAUACAUCCGUAGGCACGUAAUAAA-GCGA DQ355023.1/6272-6337 GUGUCUUGGAACGCGCGGGUCAAAUAUAAGUGGUUCACUUAUAUCCGUAGGCACGAAAAAUU-GCGU #=GC SS_cons <<<<<<----AAAA<<<<-----<<<<<<<<_____>>>>>>>>>>>>>>>>>>::::::::.aaaa #=GC RF GUGuCUUGGAuCGCgCGGGucAAaugUAuaUGGUuCAuaUAcauCCGcAGgCACGuAAaAAA.GCGA # TLS-PK2 3' extended AB354955.1/1390-1455 ..AAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAA-GCGAGGGGUUCGAAUCCACCCGUUACCCCCGGUAGGGGCCCA.. AB083196.1/6281-6347 ..AAGGGUAGUGUCUUGGAGCGCGCGGAGUAAACAUAUAUGGUUCAUAUAUGUCCGUAGGCACGUAAAAAAAGCGAGGGAUUCGAAUUCCCCCGGAACCCCCGGUUGGGGCCCA.. EF375551.1/6292-6357 ..AAGGGUUGUGUCUUGGUUCGCGCGGGUCAAGUGUAUAUGGUGCAUAUACAUCCGUAGGCACGUAAUAAA-GCGAGGGAUUCGAAUUCCCCCGUUACCCCCGGUAGGGGCCCA.. DQ355023.1/6272-6337 ..AAGGGUAGUGUCUUGGAACGCGCGGGUCAAAUAUAAGUGGUUCACUUAUAUCCGUAGGCACGAAAAAUU-GCGUGGGAUUCGAAUUCCCCCGGAACCCCCGGUAGGGGCCCA.. #=GC SS_cons ........<<<<<<<----....<<<<-----<<<<<<<._____.>>>>>>>>>>>>>>>>>>:::::::.....<<<<.......>>>>......<<<<.....>>>>...... #=GC SS_cons1 ...................<<<<.................................................>>>>...............<<<.......>>>............ #=GC cons --AAGGGUnGUGUCUUGGAnCGCGCGGRnYAAAYRUAnRUGGUUCAYnUAYRUCCGUAGGCACGnAAnAnn-GCGnGGGAUUCGAAUUCCCCCGnnACCCCCGGUnGGGGCCCA-- # STOCKHOLM 1.0 #=GF AU Infernal 1.1.2 AB000709.2/6245-6357 AAGGGUUGUCGUU..GGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAUu..uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA AB003936.1/2272-2378 ACCCGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGCUUGGCGUGUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA AB015145.1/6404-6514 GGCGUUCCUUACG..CGGUUUCU.aCCGA.ACC....uCUAUCGUGUGACGAUAU-G...UUGG...CGUAAGUUUGUAUG...ggUAGA.G.GUGUUCGAAUCAC.CCCCUu..uGUCCUGGGUAAGGACCCCA AB015146.1/6314-6423 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA AB078435.1/6245-6356 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...uCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA AB083196.1/6274-6385 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA...aGCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUU.GGGGCCCA AB089381.1/6412-6524 AAGGGUUGGUUGU..UGGAGUUUu.CACGUGA......GACGUUGGUGCAACGUAACu.gCGUG..uACAACUGUAAAAGU....aAAAA.G.GGGUUCGAAUCCC.CCCUU..uACCCC.GGGUAuGGGGCCCA AB113116.1/6245-6356 AAGGGUUGUCGUU..GGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA AB126003.1/6245-6356 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA AB162006.1/6403-6511 GGGCUUCCUUACG..CGGUUUCU.aCCGA.ACC....uCUAUCGUGUGACGAUAUG....UUGG...CGUAAGUUUGAUGG....GAGA..G.GUGUUCGAAUCAC.CCCCUu..uGUCCUGGGUAAGGACCCCA AB261167.1/6377-6485 CGGCUUUCUCAUC..UGGAUCGUaUUGUC.CU......CUCCCCUGUGAAGGUGAU....GACUU..GAUGAGUUUGUAUAa..uACGA..G.GGGUUCGAAUCCC.CCCUA...ACCCC.GGGUA.GGGGCCCA AB261175.1/6198-6304 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGCGUGGCGUAUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCGA...ACCCC.CGGUU.GGGGCCCA AB354955.1/1383-1493 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCA.CCCGU..uACCCC.CGGUA.GGGGCCCA AB355139.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUU.GGGGCCCA AB369275.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUGAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA AB628188.1/6285-6395 AAGGGUUGUGUCU..UGGUUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGGUUCAAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA AB917427.1/6324-6431 AAGAGAUGAGUCG..aGGUAUCGGGUAAUCGA.......UGGUGGGUGCCACCUA....GAUUA...UGGCUCAUUGCUUA....CCGAggG.AGGUUCGAAUCCC.CCCUA...ACCCC.GGGUA.GGGGCCCA AF012917.1/793-903 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCGC.GGGUA.GCGGCCCA AF033848.1/3207-3318 AAGGGUUGUGUAU.aUGGAUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACAUUAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA AF062519.1/1368-1478 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCCA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.GGGUU.GGGGCCCA AF126505.1/938-1048 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUAAUAUACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUU.GGGGCCGA AF132907.1/579-690 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...uCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.CGGUA.GCGGCCCA AF132908.1/726-837 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.CGGUA.GCGGCCCA AF165190.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA AF254924.1/6194-6300 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGCGUGGCGUAUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCC AF273221.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUGCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA AF321057.1/6450-6562 AAGGGAUUGUUUGcgCGGUUUCUA..CCG.AGCc...uCUGCUGUGUGACAGUAAGC...UGGC..gUAAGCAAUUAUGGG....UAGA..G.GUGUUCGAAUCAC.CCCCUu.uGCCCC.GGGUA.GGGGCCCA AF395898.3/6378-6485 AAGAGAUGAGUCG..aGGUAUCGG.GUCG.UCG.....AUGGCGGGUGCCGCCUAGA...CAA-...UGGCUCAUUGCUUU....CCGAggG.AGGUUCGAAUCCC.CCCUA...ACCCC.GGGUU.GGGGCCCA AF417242.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGGCCCA AF417243.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCCU..uUCCCC.GGGUA.GGGGCCCA AJ243571.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCGC.CGGUU.GCGGCCCA AJ252189.2/6402-6513 GGGCGUUCUUACG..CGGUUUCUa.CCGA.GUC....uCUGUCGUGUGACGACAUG-...CUGG...CGUAAGUUUGUAUGg..gUAGA..G.GUGUUCGAAUCAC.CCCCUu..uGUCCUGGGUAAGGACCCCA AJ295948.1/6403-6513 GGGCUUUCUUACG..CGGUUUCUa.CCAA.ACC....uCUGUCGUGUGACGACAU-G...UUGG...CGUAAGUUUGUAUGg..gUAGA..G.GUGUUCGAAUCAC.CCCCUu..uGUCCUGGGUAAGGACCCCA AJ308228.1/6245-6357 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAUu..uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA J557824.1/2802-2910 ACUGGUUGCUGUC..UGGAUCCA.uACAG.UUC.....ACGCGCAGUGUGCGUAUUA...CUGU...GACAGUGGAAGAUU...aUGGA..G.GGGUUCGAAUCCC.CCCCA..uACCCC.GGGUA.GGGGCCCA AM262165.1/761-873 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...uCGGA..GaAGGUUCGAAUCCU.CCCCU..aACCGC.CGGUA.GCGGCCCA AM398436.1/6270-6381 AAGAGUUGUACAU.cCGGAUCUA.uAAAG.GGA.....AAAACGUGUGACGUUUGGA..aCUUUa.gGUGUACGUAAAAAC....UAGA..G.AGGUUCGAAUCCU.CCCUG..uACCCC.CGGUA.GGGGCCCA AX466964.1/8123-8234 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA AY376394.1/938-1049 AAGGGUUGUGUAU.aUGGACCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACAUAAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA AY571290.1/6501-6612 AAGGGUUGUGUAU.aUGGAUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACGUAAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA AY633749.1/700-810 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUUaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGGCCA AY686725.1/578-689 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GGUcaaauGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA AY751778.1/6179-6285 UCUGGUUGUUCCU..UGGAUUGC..UACG.UUCa...cCAGAUUUGUGUAAUCUGGC...CGUU...AGGAACUUAAAAUU....GCGC..G.GAGUUCGAAUCUC.CCCCU...GUCCC.GGGUA.GGGAACC- D13438.1/6397-6507 AAGGGUUUGUCGU..UGGUUUCU.uCACG.GAA.....AACGUUGGUGCAACGCAAU..aCGUG..uACGACUAUAAAAAU...aAGAA..G.GGGUUCGAAUCCC.CCCCG..uACCCC.GGGUA.GGGGCCCA D38444.1/6197-6303 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGCGUGGCGUAUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA D63809.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.guGUAUAUGGUGCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA DQ139262.1/6500-6611 AAGGGUUGUGUAU.aUGGAUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uGUACACAUAAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA DQ223770.1/6196-6302 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGCGUGGCGUAUAUC...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA DQ355023.1/6265-6375 AAGGGUAGUGUCU..UGGAACGC..GCGG.GUCaa.auAUAAGUGGUUCACUUAUAU...CCGU...AGGCACGAAAAAUU....GCGU..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUA.GGGGCCCA DQ356949.1/6687-6794 UGGUGUUGGUCGG.cUGGAUUCA..CGUGCUG......UGAGGAGAGAAAUCAUACA..gCAUG...CCGAUCGUAAAAUG....UGGA..G.GGGUUCGAAUCCC.CCCUA...ACCCC.GGGUA.GGGGCCCA DQ767631.2/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCU.GGGUA.AGGGCCCA E03624.1/5886-5997 AAGGGUUGUGUAU.aUGGAUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACAUAAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA EF375551.1/6285-6395 AAGGGUUGUGUCU..UGGUUCGC..GCGG.GUCaa.guGUAUAUGGUGCAUAUACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUA.GGGGCCCA EF432728.1/2177-2283 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUGCGCGUGGCGCAUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA EU413669.1/3203-3309 ACCCCUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGUUUGACGUGUAUU...ACAG..uGGGAAUAAGUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA EU684141.1/6184-6290 UCUGGUUGUUCCC..UGGAUCAC..UACG.UCAa...cUUGCUUUGUGUAAGCAAGC...CGUU...GGGAACACAAAAUU....GUGA..G.GAGUUCGAAUCUC.CCCCU...GUCCC.GGGUA.GGGAACC- FJ848666.1/6313-6422 AACGGUUUGCUCA.uUGGUUUGC.gAAAA.CCU.....CUCGCGUGUGACGCUGAAG...UUUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA FN985165.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUU.GGGGCCCA FR878069.1/6282-6392 AAGGGUUGUGUCA..UGGAUCGC..GCGG.GUUga.auGUAUAUGGUUCAUAUACAU...CCGC...UGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA GQ280794.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUA.GGGGCCCA GQ401365.1/6204-6311 ACCCCAUAUUUCC..UGGAUCGC.cCUGU.UAA.....CGCACGUUGGACGUGUAUU...ACAG..uGGGAAUAUGUAAAA....GCGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA GU324660.1/813-923 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GCGGCCCA HE818410.1/6285-6396 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGUu.aACCGC.CGGUA.GGGGCCCA HE818412.1/6285-6394 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AG-CACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA HE818416.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAA-....GCGA..G.GGGUUCGAAUCCC.CCCGUu.aACCGC.CGGUA.GGGGCCCA HE818418.1/6284-6394 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCCG..uACCCC.CGGUA.GGGGCCCA HE818421.1/6284-6394 AAGGGUUGUGUCU..UGGAACGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA HE818423.1/6285-6396 AAGGGUUGUGUCU..UGGAACGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGUu.aACCGC.CGGUA.GGGGCCCA HE818425.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU...ACCCC.CGGuUAGGGGCCCA HE818426.1/6287-6396 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGAAUAAA-....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA HE818431.1/6285-6396 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...GGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGUu.aACCGC.CGGUA.GGGGCCCA HE818433.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCGC.CGGUA.GGGGCCCA HE818441.1/6285-6396 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGUu.aCCCCC.CGGUA.GGGGCCCA HE818442.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUUga.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCGC.CGGUA.GGGGCCCA HE818448.1/6285-6395 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GACaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCGC.CGGUA.GGGGCCCA HM008919.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUCGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGGCCCA HQ389540.1/6683-6791 UGCAGUUGCUUGG.cUGGAUCAA..CGUACCG......UGAGGAGAGAAAUCAUACG..gUAUG...CCGAGUGUUAAAAG...gUUGA..G.GGGUUCGAAUCCC.CCCUU...ACCCC.GGGUA.GGGGCCCA HQ667978.1/6205-6311 ACCCCAUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGUUGGACGUGUAUU...ACAG..uGGGAAUAUGUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA HQ667979.1/6205-6311 ACCCCAUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGUCGGACGUGUAUU...ACAG..uGGGAAUAUGUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA JF729471.1/6399-6506 ACUGGUUGUCGUC..UGGAACUG.cUACG.UUA.....ACGCCUUGUGUAGGUAUUG...CGUU...GGCGACGUAAAACA...gCAGG..G.UGGUUCGAAUCCA.CCCUU...ACCCC.GGGUA.GGGGCCCA JN205074.1/6205-6311 ACCCCUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGUUCGACGUGUAUU...ACAG..uGGGAAUAAGUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA JQ285996.1/600-710 AAGGGUUGUGUCU..UGGUUCGC..GCGG.GUCaa.auGUAUGUGGUGCAUAUACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..aACCGC.CGGUU.GGGGCCCA JQ319721.1/886-992 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGUUUGACGUGUAUU...ACAG..uGGGAAUAAGUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUA.GGGGCCCA JQ895560.1/1383-1494 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUAGGcGGCCCA JX575184.1/6285-6395 AAGGGUUGUGUCU..UGGUUCGC..GCGG.GUCaa.auGUAUAUGGUGCAUAUACAU...CCGU...AGGCACGUGAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCGC.CGGUA.GGGGCCCA JX993906.1/6285-6394 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.--GUAgGGGGCCCA KC851866.1/6314-6423 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUCGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA KF155230.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUAgGGGGCCCA KF155231.1/6314-6423 AACGGUUUGCUCA.uUGGUUUGC.gGAAA.CCU.....CUCACGUGUGACGUUGAAG...UUUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA KF155232.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCCGgGGUA.GGGGCCCA KF477193.1/6288-6398 AAGGGUUUUGUCU..UGGAACGC..GCGG.GUUaa.auAUACAUGGUUCAUGUAUAU...CCGU...AGACAAGUAAUAAU....GCGU..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUA.GGGGCCCA KF495564.1/6265-6379 AGGGUUUGGCUGU.uUGGAUCAA..GUAG.AAA....cUACACAGGUGCUGUGCAAG..aCUAC..aAUGGCCUUUAAAAAauuuUUGA..G.GAGUUCGAAUCUC.CCCGAu.gACCcc.cga.a.cuGGCCCA KF495565.1/6265-6379 AGGGUUUGGCUGU.uUGGGUCAA..GUAG.AAA....cUACACAGGUGCUGUGCAAG..aCUAC..aAUGGCCUUUUAAAAauuuUUGA..G.GAGUUCGAAUCUC.CCCGAu.gACCcc.cga.a.cuGGCCCA KF855954.1/6500-6611 AAGGCACGUGUAU.aUGGAUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACAUAAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCU KJ207374.1/6273-6385 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUGCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGGagcACCAC.UGGUG.GUGGCCCA KJ207375.1/6191-6296 ACCCGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGCACGCUUGGCGUGUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUG...ACCUC.A-GUG.GUGGCCCA KJ631123.1/6245-6356 AAGGGUUGUCGUU..GGGAUGGA.aCGCA.AUUu..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA KM873784.1/6314-6423 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUCGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCUUU...UCCCC.GGGUA.GGGGCCCA KM873788.1/6314-6425 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCCUu.uUCCCC.GGGUA.GGGGCCCA KP244682.1/6314-6423 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGGCCC- KP345899.1/6245-6356 AAGGGUUGUCGUU..GGGAUGGA.aCGCA.AUUa..aaUACACGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA KR537870.1/6273-6383 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUUaa.auGUAUAUGGUUCAUAUACAU...CUGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA KT236095.1/6314-6423 AACGGUUUGCUCG.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUCGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA KT383474.1/6284-6393 AAGGGUAGUGUCU..UGGAGCGC..GCGG.GACaa.auGUGUAUGGUUCAUACACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGG-A.GGGGCCCA KU133476.1/6285-6395 AAGGGUUGUGUCU..UGGUUCGC..GCGG.GUCaa.auGUAUAUGGUGCAUAUACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUA.GGGGCCCA KU140424.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACAUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uCCCCC.GGGUA.GGGGCCCA KU321698.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUU.GGGGCCCA KU594507.2/6289-6399 AAGGGUUUUGUCU..UGGAAUGC..GCGG.GUUaa.auAUACAUGGUUCAUGUAUAU...CCGU...AGACAAGUAAUAAU....GCGU..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUA.GGGGCCCA KU659022.1/6242-6350 AAGGGUAGUCGUC..UGGAUGAA.aCACA.AGAu...uUACACGUGUGACGUGUAUA...UGUG...GGCGACGUAAAAUU....UUCA..G.GGGUUCGAAUCCC.CCCGA...ACCGC.GGGUA.GCGGCCCA KX087214.1/676-783 ACUGGUUGUCGUC..UGGAACUG.cUACGUUA......ACGCCUUGUGUAGGUAUU...ACGUU...GGCGACGUAAAACA...gCAGG..G.UGGUUCGAAUCCA.CCCUU...ACCCC.GGGUA.GGGGCCCA KX087216.1/632-740 ACUGGUUGUCGUC..UGGAACUG.cUACGUUA......ACGCCUUGUGUAGGUAUU...ACGUU...GGCGACGUAAAACA...gCAGG..G.UGGUUCGAAUCCA.CCCUU...ACCCCGgGGUA.GGGGCCCA KX187305.1/6412-6522 AAGGGUUGGUUGU..UGGAGUUU.uCACGUGA......GACGUUGGUGCAACGUAACu.gCGUG..uACAACUGUAAAAGU...aAAAA..G.GGGUUCGAAUCCC.CCCUU..uACCCC.GGGUAuGGGGCC-- KX434725.1/6276-6386 AUGUCUUUCACCGcuCGGAUGGU..CUGU.UUG.....UCUUCCCGUAAGGAAAAGA...ACAGuggUGGUGAAAUAAAAA....ACUA..G.GGGUUCGAAUCCC.CCCUG...ACCCC.GGGUA.GGGGCCCA KX619418.1/6282-6392 AAGGGUAGUGUCU..UGGAGCGC..GCGG.GACaa.auGUGUAUGGUUCAUACACAU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUA.GGGGCCCA KX711903.1/6273-6383 AAGGGUUGUGUCA..UGGAACGC..GCGG.AUUaa.auGUAUAUGGUUCAUAUACAU...CCGC...UGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA KX883742.1/6252-6361 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCC-- KX883788.1/6267-6375 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUCGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCC- KY040049.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAACCC.CCCUU..uUCCCC.GGGUA.GGGGCCCA KY810788.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAAAAA...AGCG...G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUU.GGGGCCCA KY949475.1/6272-6382 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUU.GGGGCCCA KY949480.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUAU...CCGU...AGGCACGUAAAAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUU.GGGGCCCA KY949481.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUACAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGG..aACCCC.CGGUU.GGGGCCCA KY967223.1/6273-6383 AAGGGUAGUGUCU..UGGAGCGC..GCGG.AGUaa.acAUAUAUGGUUCAUAUAUGU...CCGU...AGGCACGUAAUAAA....GCGA..G.GGAUUCGAAUUCC.CCCGU..uACCCC.CGGUU.GGGGCCCA L35073.1/567-678 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GGGGCCCA L35074.1/570-680 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...UGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCGA...ACCGC.GGGUA.GGGGCCCA LC082100.1/6245-6356 AAGGGUUGUCGUU..AGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...AGCG...AACGACGUAAUUAU...uUUCA..G.GGGUUCGAAUCCC.CCCCG..aACCGC.GGGUA.GCGGCCCA LC127213.1/6334-6441 AAAGAGUGAGUCG..aGGUAUCGG.GUUG.UCG.....AUGGCGGGUGCCGCCUAGA...CAA-...UGGCUCAUUGCUUU....CCGAggG.AGGUUCGAAUCCC.CCCUA...ACCCC.GGGUA.GGGGCCCA M25782.1/945-1058 AAGGGUUUUGUUU..UGGUCUUC.cCGAACGCa...uaCGUUAGUGUGACUACCGUU..gUUCG...AAACAAGUAAAACA....GGAA.gG.GGGUUCGAAUCCCuCCCUA...ACCGC.GGGUAaGCGGCCCA MF434821.1/6349-6456 ACUCGUUGUUGUU..UGGAACCG.uCUGG.UUU.....ACGCUCUGUGUGAGUAUUG...CCAC...AACAACAUAAAACG...gCGGG..G.UGGUUCGAAUCCA.CCCUU...ACCCC.GGGUA.GGGGCCCC MF510463.1/6312-6421 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGGCGUUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MF510466.1/6312-6421 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCACGUGUGGCGUUGAAG...UUUCu.aUGGGCAGUAAUACU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MF960828.1/6384-6491 CGGCUUUCUCAUC..CGGAUCGCuUCACC.CU......CUCUCUUGUUAAGAUCAA....GGUUU..GAUGAGAUAGUAUU...uGCGA..G.GGGUUCGAAUCCC.CCCUA...UCCCC.GGGUA.GGGGCCCA MG001349.1/6197-6303 ACCUGUUAUUUCC..UGGAUCAC..CUGU.UAA.....CGUACGCGUGGCGUAUAUU...ACAG..uGGGAAUAACUAAAA....GUGA..G.AGGUUCGAAUCCU.CCCUA...ACCCC.GGGUU.GGGGCCGA MH063882.1/6245-6353 AAGGGUUGUCGUU..GGGAUGGA.aCGCA.AUUa..aaUACAUGUGUGACGUGUAUU...AGCG...AACGACGUAAUUAU....UUCA..G.GGGUUCGA-UCCC.CCCCG...AACGC.GGGUA.GCGGCCCA MH271411.1/6313-6422 AACGGUUUGCUCA.uUGGUUUGC..GAAA.ACC....uCUCGCGUGUGACGCUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MH271414.1/6313-6421 AACGGUUUGCUCA.uUGGUUUGC..AAAA.ACC....uCUCGCGUGUGACGCUGAAG...UUUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGG-CCA MH271416.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC.gAAAA.CCU.....CUCGCGUGUGACGCUGAAG...UUUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGAGCCA MH271423.1/6314-6422 AACGGUUUGCUCA.uUGGUUUGC..GAAA.ACC....uCUCGCGUGUGACGCUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGG-CCA MH271424.1/6314-6422 ACGGUUUGCCCAU..UGGUUUGC..GGAA.ACC....uCUCACGUGUGACGUUGAAG...UUUC..uAUGGGCAGUAAUUC...uGCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MH271426.1/6313-6422 AACGGUUUGCUCA.uUGGUUUGC.gAAAA.CCU.....CUCGCGUGUGACGCUGAAG...UCUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MH271427.1/6313-6422 AACGGUUUGCUCA.uUGGUUUGC.gAAAA.CCU.....CUCGCGUGUGACGCUGAAG...UUUUa.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MH271428.1/6313-6421 AACGGUUUGCUCA.uUGGUUUGC.gAAAA.CCU.....CUCGCGUGUGACGCUGAAG...UUUUu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGG-CCA MH271429.1/6313-6422 AACGGUUUGCUCA.uUGGUUUGC..GAAA.ACC....uCUCGCGUGUGACGCUGAAG...UCUUc.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU...UCCCC.GGGUA.GGGGCCCA MH271432.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAAACC.....uCUCACGUGUGACGCUGAAG..uUUCU..aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGGCCCA MH271435.1/6314-6424 AACGGUUUGCUCA.uUGGUUUGC..GGAA.ACC....uCUCGCGUGUGACGCUGAAG...UUUCu.aUGGGCAGUAAUUCU....GCAA..G.GGGUUCGAAUCCC.CCCUU..uUCCCC.GGGUA.GGGGCCCA MH730944.1/579-690 AACGAUUGUCAUAucUGGAUCCA..ACAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUGUGGCGUAAAACA...uCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA MH730945.1/726-837 AACGAUUGUCAUAucUGGAUCCA..GCAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCA..aACCGC.GGGUA.GCGGCCCA MH730947.1/579-690 AACGAUUGUCAUAucUGGAUCCA..GCAGUU.-.....AAACCAUGUGAUGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA MH730950.1/579-690 AACGAUUGUCAUAucUGGAUCCA..GCAGUU.-.....AAACCGUGUGACGGUGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA MH730953.1/579-690 AACGAUUGUCAUAucUGGAUCCA..GCAGUU.-.....AAACCAUGUGAUGGCGUAU..aCUGUg.gUAUGGCGUAAAACA...aCGGA..G.AGGUUCGAAUCCU.CCCCU..aACCGC.GGGUA.GCGGCCCA MH837097.1/6375-6482 CGGCUUUCUCAUC..CGGAUCGC.uUGAC.CCU.....CUCUCUUGUUAAGAUGAAG...GUUU...GAUGAGAUAGUAUU...uGCGA..G.GGGUUCGAAUCCC.CCCUG...UCCCC.GGGUA.GGGGCCCA MK012556.1/6284-6397 AAGGGUUUUGGGC.gUGGAAUCG..cAUAUGUG.....UGGUAGUGUGACUAUCUAAucaUAUg..uGCCCGAGUAAAAUA..aACGA...G.AGGUUCGAAUCCU.CCCUC...ACCCC.GGGUuAGGGGCCCA NC_001728.1/6507-6618 AAGGGUUGUGUAU.aUGGGUCAU..GCGG.AUAaa.guUAUACUGGUGCAGUAUAAC...CCGU..uAUACACAUUAAAUU....AUGA..G.GGAUUCGAAUUCC.CCCUU...ACCUC.GGGUA.GAGGCCCA X70882.1/655-765 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GUUga.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGCAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA X70883.1/655-765 AAGGGUUGUGUCU..UGGAUCGC..GCGA.GUCaa.auGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.GGGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA X72586.1/728-840 AAGGGUUAGUUGU..UGGAGUUU.uCACGUGA......GACGUUGGUGCAACGUAACu.gCGUG..uACAACUGUAAAAGU...aAAAA..G.GGGUUCGAAUCCC.CCCUU..uACCCC.GGGUAuGGGGCCCA Z96945.1/574-684 AAGGGUUGUGUCU..UGGAUCGC..GCGG.GGUcaaauGUAUAUGGUUCAUAUACAU...CCGC...AGGCACGUAAUAAA....GCGA..G.-GGUUCGAAUCCC.CCCGU..uACCCC.CGGUA.GGGGCCCA #=GC SS_cons ::::::<<<<<<<..----AAAA..<<<<<.--...<<<<<<<<<___>>>>>>>>>..>>>>>...>>>>>>>,,,,,,,....aaaa..<.<<<_______>>>.>BBB,...,<<<<.bbb__.>>>>:::: #=GC cons ARnRRUUnnnnnn--YGGnYYnn--nnnR-nnn-----nnnnnnnGUGnnnnnnnnn---Ynnn---nnnnnnRUnRnAnn----nnRA--G-RGGUUCGAAUCCC-CCCYn---ACCCC-GGGUA-GGGGCCCA //