RCSB MAXIT report on stereochemistry of submitted models,,,,,,,,
,,,,,,,,
PZ15,,,,,,,,
,,,,,,,,
No.,3D RNA model,(a)Close contact,(b)RMSD bond,(c)RMSD angle,(d)Planes,(e)Chiral,(f)Polymer Linkage,Total
1,15_solution_0,0,0,0,0,0,0,0
2,15_RNAComposerAS1_1,0,0,0,0,0,0,0
3,15_RNAComposerAS1_2,0,0,0,0,0,0,0
4,15_RNAComposerAS2_1,0,0,0,0,0,0,0
5,15_RNAComposerAS2_2,0,0,0,0,0,0,0
6,15_RW2DAS2_1,0,0,0,0,0,0,0
7,15_RW2DAS2_4,0,0,0,0,0,0,0
8,15_RW2DAS2_6,0,0,0,0,0,0,0
9,15_RW2DAS2_8,0,0,0,0,0,0,0
10,15_Adamiak_01,0,0,0,0,0,0,0
11,15_Adamiak_02,0,0,0,0,0,0,0
12,15_Adamiak_03,0,0,0,0,0,0,0
13,15_Adamiak_04,0,0,0,0,0,0,0
14,15_Adamiak_05,0,0,0,0,0,0,0
15,15_Adamiak_06,0,0,0,0,0,0,0
16,15_Adamiak_07,0,0,0,0,0,0,0
17,15_Adamiak_08,0,0,0,0,0,0,0
18,15_Adamiak_09,0,0,0,0,0,0,0
19,15_Adamiak_10,0,0,0,0,0,0,0
20,15_RW2DAS2_1,0,0,0,0,0,1,1
21,15_RW2DAS2_4,0,0,0,0,0,1,1
22,15_RW2DAS2_6,0,0,0,0,0,1,1
23,15_RW2DAS2_8,0,0,0,0,0,1,1
24,15_RW2DAS2_2,0,0,1,0,0,1,2
25,15_RW2DAS2_3,0,0,1,0,0,1,2
26,15_RW2DAS2_7,0,1,0,0,0,1,2
27,15_RW2DAS1_8,0,1,1,0,0,1,3
28,15_RW2DAS2_5,0,1,1,0,0,1,3
29,15_RW2DAS1_10,0,1,2,0,0,1,4
30,15_RW2DAS1_2,0,1,2,0,0,1,4
31,15_RW2DAS1_3,0,1,2,0,0,1,4
32,15_RW2DAS1_6,0,1,2,0,0,1,4
33,15_RW2DAS2_10,0,0,3,0,0,1,4
34,15_RW2DAS2_9,0,1,2,0,0,1,4
35,15_RW2DAS1_1,0,1,3,0,0,1,5
36,15_RW2DAS1_5,0,1,3,0,0,1,5
37,15_RW2DAS1_7,0,2,2,0,0,1,5
38,15_RW2DAS1_9,0,2,2,0,0,1,5
39,15_RW2DAS1_4,1,2,3,0,0,1,7
40,15_Chen_3,0,1,38,8,0,0,47
41,15_Chen_2,0,0,40,8,0,0,48
42,15_Chen_1,0,2,43,11,0,0,56
43,15_Chen_1,0,2,43,11,0,0,56
44,15_Chen_4,0,4,55,10,0,0,69
45,15_Chen_6,0,5,54,11,0,0,70
46,15_Chen_5,0,6,60,12,0,0,78
47,15_Chen_9,0,5,55,16,3,0,79
48,15_Chen_8,0,16,57,17,2,0,92
49,15_Chen_7,0,12,70,18,0,0,100
50,15_Chen_10,0,17,77,13,2,0,109
51,15_SimRNAAS2_10,13,42,122,22,0,12,211
52,15_SimRNAAS2_2,7,49,125,17,0,18,216
53,15_SimRNAAS1_7,10,53,129,15,0,12,219
54,15_SimRNAAS2_4,8,47,145,17,0,13,230
55,15_SimRNAAS1_1,21,49,133,14,1,17,235
56,15_SimRNAAS1_6,10,49,141,16,1,18,235
57,15_SimRNAAS1_10,10,51,139,15,3,18,236
58,15_SimRNAAS1_8,12,55,132,21,2,15,237
59,15_SimRNAAS1_5,14,52,139,16,2,16,239
60,15_SimRNAAS1_2,14,45,152,22,1,13,247
61,15_SimRNAAS1_9,24,52,136,18,1,20,251
62,15_SimRNAAS1_3,18,51,146,21,0,16,252
63,15_SimRNAAS2_5,33,54,139,18,0,13,257
64,15_SimRNAAS2_9,15,56,148,19,3,16,257
65,15_3dRNAAS2_8,2,17,181,35,22,1,258
66,15_SimRNAAS2_7,35,49,137,19,1,19,260
67,15_3dRNAAS2_10,1,19,184,35,22,1,262
68,15_SimRNAAS2_6,20,56,150,18,1,18,263
69,15_SimRNAAS2_1,7,51,162,25,2,17,264
70,15_SimRNAAS2_8,6,56,156,19,3,24,264
71,15_3dRNAAS2_1,2,18,191,33,22,1,267
72,15_3dRNAAS2_2,2,19,189,35,22,1,268
73,15_3dRNAAS2_4,2,16,190,37,22,1,268
74,15_3dRNAAS2_7,2,20,187,36,22,2,269
75,15_3dRNAAS2_6,3,21,191,32,22,2,271
76,15_3dRNAAS2_3,2,20,189,37,22,2,272
77,15_3dRNAAS2_9,2,15,197,36,22,1,273
78,15_3dRNAAS2_5,2,19,197,35,22,2,277
79,15_SimRNAAS1_4,26,57,144,28,1,24,280
80,15_SimRNAAS2_3,33,56,147,23,1,21,281
(a) number of identified too-close contacts between symmetry-related molecules in the case of crystallographic experiments.
(b) and (c) RMSD bond and angle lengths.
(d) number of unexpected deviations from planes centers.
(e) number of identified chirality errors.
(f) number of identified polymer linkage artifacts.
Gore, S., García, E. S., Hendrickx, P. M., Gutmanas, A., Westbrook, J. D., Yang, H., ... & Ikegawa, Y. (2017). Validation of structures in the Protein Data Bank. Structure, 25(12), 1916-1927. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5718880/