RCSB MAXIT report on stereochemistry of submitted models,,,,,,,,
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PZ20,,,,,,,,
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No.,3D RNA model,(a)Close contact,(b)RMSD bond,(c)RMSD angle,(d)Planes,(e)Chiral,(f)Polymer Linkage,Total
1,20_RNAComposer_3,0,0,0,0,0,0,0
2,20_RNAComposer_4,0,0,0,0,0,0,0
3,20_RNAComposer_5,0,0,0,0,0,0,0
4,20_Adamiak_1,0,0,0,0,0,0,0
5,20_Adamiak_2,0,0,0,0,0,0,0
6,20_Adamiak_3,0,0,0,0,0,0,0
7,20_Adamiak_4,0,0,0,0,0,0,0
8,20_Adamiak_5,0,0,0,0,0,0,0
9,20_RNAComposer_2,1,0,0,0,0,0,1
10,20_RW3D_1,0,0,0,0,0,1,1
11,20_RW3D_5,0,0,0,0,0,1,1
12,20_RW3D_6,0,0,0,0,0,1,1
13,20_RW3D_8,0,0,0,0,0,1,1
14,20_RW3D_9,0,0,0,0,0,1,1
15,20_RW3D_2,1,0,0,0,0,1,2
16,20_RW3D_3,0,0,1,0,0,1,2
17,20_RW3D_4,0,0,1,0,0,1,2
18,20_RW3D_10,0,0,2,0,0,1,3
19,20_RW3D_7,0,0,1,0,1,1,3
20,20_Das_2,0,1,3,0,0,0,4
21,20_RNAComposer_1,4,0,0,0,0,0,4
22,20_Das_1,2,1,3,0,0,0,6
23,20_Das_4,3,1,2,0,0,0,6
24,20_Das_5,2,1,3,0,0,1,7
25,20_Das_3,1,3,3,0,0,1,8
26,20_Bujnicki_5,0,9,79,17,3,1,109
27,20_Bujnicki_1,3,13,115,14,1,3,149
28,20_Xiao3_5,1,1,114,34,34,0,184
29,20_Chen_5,17,60,85,0,1,41,204
30,20_simRNA_5,12,45,122,19,0,10,208
31,20_simRNA_2,25,48,107,17,1,21,219
32,20_Xiao3_2,1,9,133,39,37,0,219
33,20_Xiao3_4,1,9,118,43,50,0,221
34,20_simRNA_1,18,55,118,17,1,17,226
35,20_simRNA_4,5,58,125,16,0,22,226
36,20_simRNA_3,15,52,133,22,2,14,238
37,20_Chen_1,9,36,172,0,0,27,244
38,20_Xiao3_1,1,19,143,42,53,0,258
39,20_Xiao3_3,1,28,165,38,27,0,259
40,20_Bujnicki_2,3,33,208,15,3,3,265
41,20_Bujnicki_4,4,40,208,14,1,4,271
42,20_Bujnicki_3,5,58,205,12,2,4,286
43,20_Chen_4,42,84,116,0,3,43,288
44,20_Chen_3,6,40,236,1,0,20,303
45,20_Chen_2,18,38,261,2,0,18,337
(a) number of identified too-close contacts between symmetry-related molecules in the case of crystallographic experiments.
(b) and (c) RMSD bond and angle lengths.
(d) number of unexpected deviations from planes centers.
(e) number of identified chirality errors.
(f) number of identified polymer linkage artifacts.
Gore, S., García, E. S., Hendrickx, P. M., Gutmanas, A., Westbrook, J. D., Yang, H., ... & Ikegawa, Y. (2017). Validation of structures in the Protein Data Bank. Structure, 25(12), 1916-1927. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5718880/