RCSB MAXIT report on stereochemistry of submitted models,,,,,,,,
,,,,,,,,
PZ19,,,,,,,,
,,,,,,,,
No.,3D RNA model,(a)Close contact,(b)RMSD bond,(c)RMSD angle,(d)Planes,(e)Chiral,(f)Polymer Linkage,Total
1,19_RNAComposer_1,0,0,0,0,0,0,0
2,19_RNAComposer_2,0,0,0,0,0,0,0
3,19_RNAComposer_3,0,0,0,0,0,0,0
4,19_RNAComposer_4,0,0,0,0,0,0,0
5,19_RNAComposer_5,0,0,0,0,0,0,0
6,19_Adamiak_1,0,0,0,0,0,0,0
7,19_Adamiak_2,0,0,0,0,0,0,0
8,19_Adamiak_3,0,0,0,0,0,0,0
9,19_Adamiak_4,0,0,0,0,0,0,0
10,19_Adamiak_5,0,0,0,0,0,0,0
11,19_RW3D_1,0,0,0,0,0,0,0
12,19_RW3D_2,0,0,0,0,0,0,0
13,19_RW3D_7,0,0,0,0,0,0,0
14,19_RW3D_9,0,0,0,0,0,0,0
15,19_RW3D_10,0,1,0,0,0,0,1
16,19_RW3D_3,0,0,1,0,0,0,1
17,19_RW3D_4,0,0,1,0,0,0,1
18,19_RW3D_5,0,0,1,0,0,0,1
19,19_RW3D_6,0,1,0,0,0,0,1
20,19_RW3D_8,0,1,2,0,0,0,3
21,19_Das_1,0,1,3,0,0,0,4
22,19_Das_5,0,2,2,0,0,0,4
23,19_Das_4,1,1,4,0,0,0,6
24,19_Das_3,0,3,4,0,0,0,7
25,19_Das_2,0,3,5,0,0,0,8
26,19_LeeServer_5,0,2,4,12,0,0,18
27,19_solution_0,0,6,15,0,0,0,21
28,19_LeeServer_4,0,2,5,17,0,0,24
29,19_Chen_2,0,2,37,11,0,0,50
30,19_Chen_4,0,7,43,5,0,0,55
31,19_Chen_3,0,1,44,16,0,0,61
32,19_Ding_4,0,1,41,19,0,0,61
33,19_Ding_2,0,0,38,26,0,0,64
34,19_LeeServer_1,0,2,4,14,50,0,70
35,19_Ding_5,0,1,45,25,0,0,71
36,19_LeeServer_2,0,2,5,13,51,0,71
37,19_LeeServer_3,0,2,5,15,49,0,71
38,19_Ding_3,0,0,49,26,0,0,75
39,19_Bujnicki_1,0,8,60,9,2,0,79
40,19_Ding_1,0,1,52,26,0,0,79
41,19_Bujnicki_2,0,6,84,9,5,0,104
42,19_Dokholyan_1,0,0,61,46,0,0,107
43,19_Bujnicki_5,0,10,80,9,11,0,110
44,19_Chen_1,0,18,89,20,1,0,128
45,19_Bujnicki_3,0,6,102,19,4,0,131
46,19_Chen_5,0,30,110,23,4,0,167
47,19_simRNA_1,14,38,91,12,1,11,167
48,19_3dRNA_5,1,13,117,27,11,0,169
49,19_3dRNA_2,1,13,118,33,11,0,176
50,19_Bujnicki_4,0,12,132,22,10,0,176
51,19_3dRNA_4,1,12,121,29,15,0,178
52,19_3dRNA_3,1,8,119,36,15,0,179
53,19_3dRNA_1,1,13,128,33,12,0,187
54,19_simRNA_3,10,50,110,11,2,14,197
55,19_simRNA_2,8,43,117,17,0,17,202
(a) number of identified too-close contacts between symmetry-related molecules in the case of crystallographic experiments.
(b) and (c) RMSD bond and angle lengths.
(d) number of unexpected deviations from planes centers.
(e) number of identified chirality errors.
(f) number of identified polymer linkage artifacts.
Gore, S., García, E. S., Hendrickx, P. M., Gutmanas, A., Westbrook, J. D., Yang, H., ... & Ikegawa, Y. (2017). Validation of structures in the Protein Data Bank. Structure, 25(12), 1916-1927. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5718880/