ref_path = /Applications/bowtie-1.0.0/indexes/
ref_genome = Scer
GeneAnnotationFile = ~/Desktop/Mod-seq/SGD_SacCer3_filtered.gff
adapter5 = ^ATCGTAGGCACCTGAAA
adapter3 = CTGTAGGCACCATCAAT
output_path = default
bowtie_alignment_threads = 2
max_python_threads = 4
