Rank,transcript_cluster_id,GeneSymbol,UpProbe,UpFold,UpPval,DownProbe,DownFold,DownPval,IR_Fold,IR_Pval,SpliceScore,SPLICERpval,ANOVApval,Description,Chrom,Strand,tUP_tstarts,UP_blockSizes,DOWN_tstarts,DOWN_blockSizes,Testable_Hypothesis,Protein_Coding,Mechanism,Direction,Subtype
1,2906607,NFYA,204109_s_at,2.199,0.006973011,236832_at,0.291,0.00744704,7.561,0.00102,45.91197,0,0,nuclear transcription factor Y,6,+,"41173071,","535,","41215571,41216313,","214,202,",no,---,Unclassified,---,---
2,3548788,CPSF2,225994_at,4.889,0.014047202,225986_x_at,0.445,0.016379447,10.996,0.01123,44.43725,0,0.00064,cleavage and polyadenylation specific factor 2,14,+,"91698309,91698509,","200,265,","91699699,","127,",yes,no,Tandem 3' UTR,Shorten,---
4,3019401,ZNF277,218645_at,3.43,0.001514613,215887_at,0.453,0.000206646,7.574,0.00024,38.84374,0,0,zinc finger protein 277 ,7,+,"111768205,111769851,","132,409,","111715682,111715880,111715910,","198,30,328,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
5,2450416,DDX59,228385_at,1.875,0.002950253,223662_x_at,0.458,0.004060237,4.09,0.00149,36.24157,0,0.00003,DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 ,1,-,"198879983,","269,","198859678,","429,",yes,yes,Alt 3' TE,More 5' TE,Alt 3' Splice Site
6,3203086,DDX58,218943_s_at,2.028,0.013431234,242961_x_at,0.405,0.011511873,5.009,0.00236,35.26094,0,0.00062,DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 ,9,-,"32447024,32449368,","392,46,","32445388,","269,",yes,no,Tandem 3' UTR,Shorten,---
7,2575054,WDR33,222763_s_at,2.105,0.008140377,229141_at,0.422,0.004419141,4.991,0.0033,34.38875,0,0,WD repeat domain 33 ,2,-,"128238630,","251,","128209661,","373,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
8,3591044,HAUS2,229181_s_at,2.689,0.005315642,220071_x_at,0.553,0.001699266,4.861,0.00295,33.36712,0,0.00005,HAUS augmin-like complex,15,+,"40643249,40646096,","98,409,","40646742,","556,",yes,no,Tandem 3' UTR,Shorten,---
9,3406015,ATF7IP,218987_at,2.218,0.047372485,231825_x_at,0.482,0.003156124,4.6,0.00791,32.75379,0.00001,0.00104,activating transcription factor 7 interacting protein ,12,+,"14541961,","410,","14520087,14520224,","82,373,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
10,2434575,CTSS,202901_x_at,1.937,0.029406226,232617_at,0.479,0.019222787,4.04,0.0049,32.61082,0,0.00112,cathepsin S ,1,-,"148971490,148971555,","64,496,","148969324,148969663,","336,107,",yes,no,Tandem 3' UTR,Shorten,---
11,2704894,PHC3,1552644_a_at,2.625,0.01074785,226508_at,0.541,0.003040462,4.853,0.00198,30.72647,0,0.00005,polyhomeotic homolog 3 (Drosophila) ,3,-,"171297454,","404,","171288144,","453,",yes,no,Tandem 3' UTR,Shorten,---
12,3576889,ATXN3,205415_s_at,1.496,0.051142066,235240_at,0.601,0.077618613,2.49,0.00496,29.43647,0,0.00635,ataxin 3 ,14,-,"91600222,91607031,91617061,91618396,","289,119,97,45,","91594606,","392,",yes,no,Tandem 3' UTR,Shorten,---
13,2389062,FAM36A,224824_at,1.539,0.011237906,224820_at,0.48,0.009266537,3.207,0.00064,28.41479,0,0.00026,family with sequence similarity 36,1,+,"243065516,243071868,243072119,243072965,","165,115,64,217,","243074715,","210,",yes,no,Tandem 3' UTR,Shorten,---
14,2801608,6-Mar,215512_at,1.829,0.025148411,201737_s_at,0.548,0.048613034,3.337,0.0001,27.19974,0,0.00256,membrane-associated ring finger (C3HC4) 6 ,5,+,"10454270,","531,","10487933,","403,",no,No,Unclassified,---,---
16,2757751,MXD4,212347_x_at,1.508,0.110614872,210778_s_at,0.725,0.040020459,2.08,0.00301,25.69562,0,0.00743,MAX dimerization protein 4 ,4,-,"2221784,2222608,","442,79,","2221022,","547,",yes,no,Tandem 3' UTR,Shorten,---
18,3643703,UBE2I,213535_s_at,1.584,0.014857856,211008_s_at,0.681,0.017142458,2.326,0.0093,25.05107,0,0.00052,ubiquitin-conjugating enzyme E2I (UBC9 homolog,16,+,"1314754,1315146,","392,158,","1311195,1311230,1311432,","34,193,328,",no,---,Unclassified,---,---
19,3962469,RRP7B,202937_x_at,1.586,0.037373533,202938_x_at,0.621,0.009231915,2.552,0.01361,24.23799,0.00003,0.00028,ribosomal RNA processing 7 homolog B (S. cerevisiae) ,22,-,"41238537,41240055,","408,34,","41292250,41297070,41297137,41298385,41299885,41300121,","38,66,16,94,235,48,",no,---,Unclassified,---,---
20,2425212,DBT,205371_s_at,3.658,0.000650294,205370_x_at,0.561,0.006355915,6.519,0.00062,24.15396,0,0,dihydrolipoamide branched chain transacylase E2 ,1,-,"100433307,100433407,100433441,100433478,100433526,100433630,100433635,100433662,100433712,100433727,100433732,100433759,","99,33,37,48,103,5,24,50,14,5,26,34,","100432363,100432487,100432632,100432654,","124,144,21,260,",yes,no,Tandem 3' UTR,Shorten,---
21,3508696,N4BP2L2,214748_at,1.57,0.002457221,221899_at,0.363,0.002711716,4.324,0.00052,23.95874,0,0,NEDD4 binding protein 2-like 2 ,13,-,"31904605,","498,","31998999,","482,",no,---,Unclassified,---,---
22,4019486,6-Sep,212415_at,1.625,0.006843158,213666_at,0.5,0.012370007,3.252,0.00023,23.70612,0,0.00235,septin 6 ,X,-,"118637347,","540,","118633747,","549,",yes,yes,Alt 3' TE,More 5' TE,Alt 3' Splice Site
23,3717635,ZNF207,200829_x_at,1.778,0.009576199,231848_x_at,0.624,0.017674233,2.847,0.00516,23.55787,0,0.00019,zinc finger protein 207 ,17,+,"27720999,","555,","27731555,27731658,","103,377,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
24,3930360,RUNX1,1555559_s_at,1.382,0.03576349,209360_s_at,0.587,0.031608402,2.354,0.00906,23.5357,0,0.00255,runt-related transcription factor 1 ,21,-,"16085751,16093946,16099310,16105326,16105371,","103,87,138,45,27,","35082106,","411,",no,---,Unclassified,---,---
26,2334404,NASP,201970_s_at,1.482,0.068686655,201969_at,0.708,0.042035154,2.092,0.00096,22.15807,0,0.00612,nuclear autoantigenic sperm protein (histone-binding) ,1,+,"45853625,45854595,45854884,45855721,45856319,45856332,45856343,","105,57,78,129,12,6,45,","45856600,45856691,","91,429,",yes,no,Tandem 3' UTR,Shorten,---
28,3688197,VKORC1,217949_s_at,1.482,0.107234456,214226_at,0.684,0.031983295,2.167,0.00452,21.16185,0.00004,0.00903,vitamin K epoxide reductase complex,16,-,"31009808,","358,","31002323,31002544,","221,176,",yes,yes,Alt 3' TE,More 5' TE,Alt 3' Splice Site
30,2488785,ALMS1,214220_s_at,1.701,0.028768509,214707_x_at,0.473,0.003109961,3.598,0.00275,21.07007,0,0.00031,Alstrom syndrome 1 ,2,+,"73689169,73690202,","40,139,","73683984,","479,",no,---,Unclassified,---,---
31,3032017,NUB1,1569030_s_at,1.792,0.081023029,1557071_s_at,0.542,0.03305773,3.304,0.00378,20.68806,0,0.00508,negative regulator of ubiquitin-like proteins 1 ,7,+,"150688781,150689062,","137,206,","150690891,","375,",yes,no,Tandem 3' UTR,Shorten,---
32,3698055,TXNL4B,222748_s_at,3.145,0.004651641,218794_s_at,0.839,0.008906331,3.749,0.00304,20.2272,0,0.00032,thioredoxin-like 4B ,16,-,"70677757,70680386,","445,55,","70676306,","437,",yes,no,Tandem 3' UTR,Shorten,---
35,3590709,JMJD7-PLA2G4B,222256_s_at,1.328,0.004077293,219095_at,0.744,0.005784974,1.784,0.00088,19.51334,0.00001,0.00005,JMJD7-PLA2G4B readthrough transcript ,15,+,"39916360,39916557,39916717,","70,153,272,","39927169,","433,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
36,2500838,POLR1B,223403_s_at,2.073,0.015896124,220113_x_at,0.677,0.003578991,3.064,0.00358,19.50302,0.00002,0.00043,polymerase (RNA) I polypeptide B,2,+,"113049850,","459,","113051299,","533,",yes,no,Tandem 3' UTR,Shorten,---
38,2316558,RER1,202296_s_at,2.846,0.001052711,213296_at,0.71,0.002745602,4.007,0.0006,19.23266,0,0,RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) ,1,+,"2318421,2320713,2322155,2323505,2324333,","98,100,79,136,33,","2326238,","474,",yes,no,Tandem 3' UTR,Shorten,---
39,3888133,CSE1L,201112_s_at,1.881,0.004789656,210765_at,0.629,0.033636624,2.989,0.00516,18.62035,0,0.00064,CSE1 chromosome segregation 1-like (yeast) ,20,+,"47144154,47144675,","76,234,","47145897,47146222,","325,79,",no,No,Unclassified,---,---
40,3632152,HEXA,201765_s_at,1.598,0.006776279,215155_at,0.688,0.020585069,2.323,0.00217,18.34521,0.00001,0.00028,hexosaminidase A (alpha polypeptide) ,15,-,"70423321,70424840,70425629,70425921,","214,105,91,125,","70424712,","485,",yes,no,Internal Event,Exclusion,Within 3' TE
41,3064082,LRCH4,90610_at,1.248,0.005044666,204692_at,0.582,0.014104534,2.145,0.00193,17.95522,0.00001,0.00063,leucine-rich repeats and calponin homology (CH) domain containing 4 ,7,-,"100009595,100009863,","268,54,","100007824,100008212,100008418,","306,98,158,",no,---,Unclassified,---,---
42,2739792,ALPK1,227438_at,2.295,0.004947378,207133_x_at,0.719,0.021363252,3.192,0.00019,17.93423,0,0.00019,alpha-kinase 1 ,4,+,"113581659,113581807,","51,439,","113554974,113555847,","187,276,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
43,3976124,PCTK1,208824_x_at,1.406,0.020350728,208823_s_at,0.777,0.006617319,1.81,0.00133,17.77903,0,0.00075,PCTAIRE protein kinase 1 ,X,+,"46971433,46971523,46971721,46972909,46973073,","9,43,91,78,255,","46973748,46973775,","27,537,",yes,no,Tandem 3' UTR,Shorten,---
45,2743085,LARP2,226750_at,3.046,0.009630479,1554038_at,0.598,0.083659108,5.093,0.0179,17.06487,0,0.00123,La ribonucleoprotein domain family,4,+,"129248924,","555,","129362962,","541,",no,---,Unclassified,---,---
46,2743315,PHF17,235024_at,1.312,0.034593569,218517_at,0.702,0.018845937,1.869,0.00529,16.6832,0.00002,0.00125,PHD finger protein 17 ,4,+,"130004122,","508,","130013337,","505,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
47,2491336,KCMF1,217938_s_at,1.92,0.003493618,222471_s_at,0.536,0.042557091,3.586,0.00215,16.68307,0.00001,0.00067,potassium channel modulatory factor 1 ,2,+,"85133931,","438,","85135355,","501,",yes,no,Tandem 3' UTR,Shorten,---
48,3865715,SYMPK,202339_at,1.282,0.000694191,1554595_at,0.44,0.020700387,2.913,0.00701,16.57483,0.00008,0.00172,symplekin ,19,-,"51010648,51010948,51011579,","147,333,17,","51026293,51026393,","99,81,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
49,3723572,C17orf69,1568987_at,1.438,0.016744943,1553399_a_at,0.699,0.049952933,2.055,0.00144,16.30902,0.00003,0.00199,chromosome 17 open reading frame 69 ,17,+,"41070556,41070876,","320,170,","41074867,41074926,41074958,","59,32,35,",no,---,Unclassified,---,---
50,3337918,TPCN2,231978_at,2.172,0.001772028,242554_at,0.501,0.014922985,4.335,0.00125,16.17251,0.00001,0.0004,two pore segment channel 2 ,11,+,"68685966,68686004,68686072,","38,68,310,","68614513,","224,",no,Yes,Unclassified,---,---
51,2562198,TGOLN2,203833_s_at,1.698,0.047969329,1554608_at,0.707,0.00447732,2.403,0.0099,16.15005,0.00013,0.00294,trans-golgi network protein 2 ,2,-,"85403270,85405548,85407141,85407434,","105,84,293,36,","85392305,85404961,","404,157,",yes,no,Tandem 3' UTR,Shorten,---
52,3204496,PIGO,209998_at,1.681,0.019424347,214990_at,0.728,0.060671981,2.308,0.02928,16.12384,0.00001,0.00208,phosphatidylinositol glycan anchor biosynthesis,9,-,"35078861,35079376,","357,16,","35080994,","153,",yes,no,Tandem 3' UTR,Lengthen,---
53,2940826,TXNDC5,221253_s_at,7.154,0.003598334,226544_x_at,0.768,0.014447244,9.32,0.00309,16.08207,0,0.00013,thioredoxin domain containing 5 (endoplasmic reticulum) ,6,-,"7826825,","446,","7959245,","494,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
54,3653317,RBBP6,212781_at,1.55,0.001041857,223802_s_at,0.705,0.000238095,2.198,0.00001,15.64794,0.00001,0.00501,retinoblastoma binding protein 6 ,16,+,"24491292,","361,","24459423,","448,",yes,yes,Alt 5' Initiation,More 3' start,---
55,3807370,DYM,223171_at,1.854,0.016555564,220774_at,0.714,0.073475217,2.597,0.01239,15.31202,0.00001,0.00205,dymeclin ,18,-,"44824286,44877769,","286,111,","44898412,","500,",no,Yes,Unclassified,---,---
57,3895232,UBOX5,219016_at,1.688,0.011961737,204598_at,0.765,0.000752257,2.207,0.0011,14.7841,0.00015,0.00002,U-box domain containing 5 ,20,-,"3075395,","370,","3036266,","493,",yes,yes,Alt 3' TE,More 5' TE,Alt 3' Splice Site
60,3835935,CLPTM1,211136_s_at,1.947,0.026553972,201640_x_at,0.789,0.090346764,2.468,0.03069,14.48307,0.00001,0.00421,cleft lip and palate associated transmembrane protein 1 ,19,+,"50187439,50187708,50188164,","59,245,116,","50187879,","527,",yes,no,Internal Event,Exclusion,Within 3' TE
62,3552729,PPP2R5C,213305_s_at,1.775,0.01182221,201877_s_at,0.641,0.050991633,2.767,0.00002,14.36933,0.00001,0.00652,protein phosphatase 2,14,+,"101442526,101445678,","93,59,","101463195,101463696,","501,24,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
63,2967550,ATG5,202511_s_at,1.966,0.03582913,202512_s_at,0.495,0.001045667,3.976,0.0005,14.26268,0.00004,0.00033,ATG5 autophagy related 5 homolog (S. cerevisiae) ,6,-,"106740567,","495,","106739141,","367,",yes,no,Tandem 3' UTR,Shorten,---
64,3944922,TRIOBP,210276_s_at,1.512,0.008278558,1552332_at,0.776,0.022881741,1.948,0.00813,14.25976,0,0.0002,TRIO and F-actin binding protein ,22,+,"36497625,36498553,36499735,36499958,","64,164,223,59,","36485381,","400,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
65,3643966,CRAMP1L,212115_at,1.728,0.007382825,212109_at,0.914,0.008435204,1.891,0.00171,14.03437,0.00001,0.00111,Crm,16,+,"1690852,","494,","1691510,","489,",yes,no,Tandem 3' UTR,Shorten,---
67,3830571,HAUS5,213053_at,1.143,0.031148701,36888_at,0.736,0.031976664,1.552,0.01235,13.77872,0.00005,0.00323,HAUS augmin-like complex,19,+,"40805754,","568,","40807715,","342,",yes,no,Tandem 3' UTR,Shorten,---
69,2486740,PNO1,203622_s_at,2.513,0.013195016,211697_x_at,0.623,0.16002079,4.034,0.02353,13.23158,0.00003,0.00426,partner of NOB1 homolog (S. cerevisiae) ,2,+,"68253982,68255370,68255659,","71,288,69,","68255703,68255945,","242,267,",yes,no,Tandem 3' UTR,Shorten,---
71,2816563,AGGF1,218534_s_at,1.996,0.005537704,222661_at,0.789,0.039910245,2.529,0.00117,13.03915,0.00003,0.00033,angiogenic factor with G patch and FHA domains 1 ,5,+,"76395098,","536,","76396223,76396307,","84,372,",yes,no,Tandem 3' UTR,Shorten,---
72,3645402,FLYWCH1,234106_s_at,1.479,0.003517538,225952_at,0.722,0.022021853,2.048,0.00036,12.54485,0.00003,0.00039,FLYWCH-type zinc finger 1 ,16,+,"2927208,2928185,2930033,","178,273,50,","2940613,2941082,","468,60,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
73,3924783,PRMT2,228725_x_at,1.484,0.006263592,221564_at,0.757,0.03489239,1.961,0.00001,12.46251,0.00003,0.00025,protein arginine methyltransferase 2 ,21,+,"46888757,46892797,46893914,","71,162,275,","46903939,","466,",no,No,Unclassified,---,---
74,3412008,PPHLN1,225073_at,1.52,0.051414542,1555350_at,0.59,0.009553949,2.576,0.01526,12.31158,0.00004,0.00049,periphilin 1 ,12,+,"41121455,41121610,","155,369,","41127071,","323,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
75,2828146,CDC42SE2,1552613_s_at,2.418,0.033779847,224709_s_at,0.717,0.053912443,3.372,0.00315,12.12166,0.00001,0.00631,CDC42 small effector 2 ,5,+,"130755619,130755651,130755784,130755800,130755814,130755827,130755880,130755945,130756030,","32,131,15,14,13,53,65,85,88,","130757699,","517,",yes,no,Tandem 3' UTR,Shorten,---
79,2793054,CBR4,213626_at,1.226,0.124220266,1553693_s_at,0.648,0.04082589,1.891,0.00124,11.92784,0.00011,0.00834,carbonyl reductase 4 ,4,-,"170145353,","527,","170158890,","491,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
80,3811339,BCL2,203684_s_at,1.329,0.102271418,203685_at,0.686,0.02189932,1.937,0.01009,11.87751,0.00018,0.00484,B-cell CLL,18,-,"58943960,","545,","58941593,","566,",yes,no,Tandem 3' UTR,Shorten,---
81,2566383,C2orf64,225410_at,1.669,0.002184538,225409_at,0.655,0.045251834,2.547,0.00068,11.76284,0.00015,0.00044,chromosome 2 open reading frame 64 ,2,-,"98583449,98587002,98591201,","239,84,127,","98582379,","488,",yes,no,Tandem 3' UTR,Shorten,---
84,3524618,ARGLU1,222508_s_at,1.72,0.020245701,218067_s_at,0.788,0.113675657,2.182,0.00828,11.51177,0.00011,0.00352,arginine and glutamate rich 1 ,13,-,"106017993,","484,","105993710,105994191,","480,35,",yes,yes,Alt 5' Initiation,More 5' start,---
88,3271018,GLRX3,209080_x_at,2.922,0.001532106,207506_at,0.751,0.061291362,3.892,0.00157,11.03042,0.00007,0.00008,glutaredoxin 3 ,10,+,"131849203,131854760,131855172,131857686,131859837,131863120,131863250,131867595,","48,173,62,58,53,40,93,37,","131872250,","335,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
89,3063536,TRIM4,223384_s_at,1.304,0.255135799,224159_x_at,0.304,0.020419798,4.288,0.04606,10.90282,0.00006,0.00584,tripartite motif-containing 4 ,7,-,"99326632,","416,","99326003,","275,",yes,no,Tandem 3' UTR,Shorten,---
90,2947572,TRIM27,212116_at,1.847,0.007503643,212118_at,0.778,0.084000245,2.373,0.00003,10.78415,0.00015,0.00088,tripartite motif-containing 27 ,6,-,"28979646,","508,","28978819,","540,",yes,no,Tandem 3' UTR,Shorten,---
91,3659306,LONP2,223098_s_at,3.096,0.000165764,221834_at,0.426,0.01668545,7.268,0.0005,10.75764,0.00004,0,lon peptidase 2,16,+,"46943007,","284,","46947372,46947663,","291,244,",no,---,Unclassified,---,---
92,2648141,MBNL1,1555594_a_at,1.939,0.022344066,1558111_at,0.278,0.000995827,6.973,0.00272,10.74658,0.00001,0,muscleblind-like (Drosophila) ,3,+,"153645760,153648098,153656020,153656745,153659749,","258,154,36,95,51,","153502395,","340,",no,Yes,Unclassified,---,---
95,3497586,MBNL2,205018_s_at,1.895,0.096484304,232138_at,0.287,0.002042179,6.594,0.00221,10.12385,0.00004,0.0003,muscleblind-like 2 (Drosophila) ,13,+,"96841662,96841927,","265,281,","96809057,","465,",no,---,Unclassified,---,---
97,3803418,KLHL14,1554942_a_at,0.782,0.098223696,228377_at,0.048,0.000408023,16.308,0.00051,9.94049,0.00003,0.00004,kelch-like 14 (Drosophila) ,18,-,"28575924,28603605,","86,310,","28506669,28507008,","339,193,",no,No,Unclassified,---,---
98,3966057,CPT1B,210069_at,1.558,0.029688345,204193_at,0.678,0.126401974,2.297,0.01339,9.91827,0.00025,0.00938,carnitine palmitoyltransferase 1B (muscle) ,22,-,"49354205,49354630,","171,15,","49364314,49364720,49365021,49365268,","236,82,104,110,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
99,3300793,C10orf4,226398_s_at,1.937,0.016060491,238596_at,0.897,0.104585028,2.159,0.0059,9.90755,0.00014,0.00295,chromosome 10 open reading frame 4 ,10,-,"95419453,95420516,","162,41,","95437178,","276,",no,---,Unclassified,---,---
100,3978453,GNL3L,205010_at,1.68,0.013193256,222109_at,0.806,0.111861592,2.084,0.00362,9.90646,0.0003,0.00215,guanine nucleotide binding protein-like 3 (nucleolar)-like ,X,+,"54601764,54603677,","49,204,","54606371,54606562,","190,334,",yes,no,Tandem 3' UTR,Shorten,---
102,3302805,HPS1,210112_at,1.633,0.008661018,203308_x_at,0.7,0.136766472,2.334,0.00257,9.81978,0.00043,0.00463,Hermansky-Pudlak syndrome 1 ,10,-,"100179034,","298,","100166818,","495,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
103,2899340,BTN2A2,205299_s_at,1.388,0.161490933,205298_s_at,0.627,0.014441147,2.215,0.00936,9.78671,0.00045,0.00738,butyrophilin,6,+,"26502533,","478,","26501687,","299,",yes,no,Tandem 3' UTR,Lengthen,---
104,2890148,HNRNPH1,213470_s_at,2.06,0.012325118,201031_s_at,0.841,0.133523646,2.45,0.00968,9.77874,0.00019,0.00198,heterogeneous nuclear ribonucleoprotein H1 (H) ,5,-,"178977409,178977630,178977750,","221,33,140,","178973825,178974078,","253,295,",no,No,Unclassified,---,---
105,3771513,PRPSAP1,202529_at,1.403,0.039338942,1556715_at,0.615,0.001135456,2.279,0.00097,9.63987,0.00048,0.00017,phosphoribosyl pyrophosphate synthetase-associated protein 1 ,17,-,"71818641,","558,","71820515,71820802,","287,265,",no,No,Unclassified,---,---
106,3099089,CHCHD7,222701_s_at,1.732,0.000748768,218642_s_at,0.736,0.029667728,2.353,0.0006,9.62422,0.0004,0.00005,coiled-coil-helix-coiled-coil-helix domain containing 7 ,8,+,"57286921,57287874,57289709,57291545,57292443,","29,101,71,99,55,","57293236,","455,",yes,no,Tandem 3' UTR,Shorten,---
107,2528020,TTLL4,203702_s_at,1.428,0.141455791,1557611_at,0.665,0.010534012,2.148,0.04865,9.61814,0.0006,0.00748,tubulin tyrosine ligase-like family,2,+,"219327113,","527,","219321032,","318,",no,No,Unclassified,---,---
108,3204744,TLN1,203254_s_at,1.339,0.047400381,232763_at,0.553,0.001233827,2.421,0.00491,9.35975,0.00042,0.00011,talin 1 ,9,-,"35687516,35688040,","397,25,","35710715,","401,",yes,yes,Internal Event,Exclusion,
111,2434319,ANP32E,208103_s_at,3.809,0.002192903,221505_at,1.184,0.037936979,3.217,0.00541,8.96471,0.00003,0.00096,acidic (leucine-rich) nuclear phosphoprotein 32 family,1,-,"148459319,148462135,148465563,","368,55,40,","148457545,","325,",yes,no,Tandem 3' UTR,Shorten,---
115,2598606,PECR,221142_s_at,4.213,0.002155381,223619_x_at,0.88,0.168538219,4.787,0.00215,8.80745,0.00021,0.00017,peroxisomal trans-2-enoyl-CoA reductase ,2,-,"216612172,216616871,216622230,216624416,","156,112,111,97,","216611408,","489,",yes,no,Tandem 3' UTR,Shorten,---
118,3825446,DDX49,210811_s_at,2.088,0.000551069,232915_at,0.832,0.032876358,2.508,0.0017,8.58989,0.00046,0.00001,DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 ,19,+,"18899653,18899773,18899936,","10,72,482,","18896546,18896698,18897279,18897296,","152,310,11,8,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
119,3715489,TMEM97,212279_at,5.635,0.000783453,214283_at,1.507,0.002130374,3.739,0.00075,8.41451,0,0.00479,transmembrane protein 97 ,17,+,"23670375,23676655,23677686,","143,145,167,","23679372,","421,",yes,no,Tandem 3' UTR,Shorten,---
122,3819016,STXBP2,209367_at,1.452,0.060625396,1570420_at,0.682,0.001147394,2.128,0.01065,8.2429,0.00144,0.00099,syntaxin binding protein 2 ,19,+,"7616106,7617134,7618047,7618239,7618378,7618610,","86,96,86,138,19,59,","7611455,7611785,","240,175,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
124,3325839,TCP11L1,205796_at,6.037,0.000876657,205797_s_at,1.494,0.001920826,4.042,0.00481,8.09084,0,0.00062,t-complex 11 (mouse)-like 1 ,11,+,"33050768,","157,","33044110,33046808,33050595,","23,173,146,",yes,no,Tandem 3' UTR,Lengthen,---
129,3736162,TMC8,236554_x_at,1.969,0.002052377,227353_at,0.732,0.133191866,2.69,0.00352,7.92307,0.001,0.00079,transmembrane channel-like 8 ,17,+,"73648690,73648784,","91,217,","73650124,","504,",yes,no,Tandem 3' UTR,Shorten,---
131,2327542,TRNAU1AP,218977_s_at,1.584,0.003424889,222800_at,0.82,0.079062829,1.932,0.00131,7.75343,0.00138,0.00041,tRNA selenocysteine 1 associated protein 1 ,1,+,"28766424,28770274,28770965,28776598,","88,163,34,98,","28777115,","495,",yes,no,Tandem 3' UTR,Shorten,---
133,3854000,SLC35E1,222263_at,1.468,0.09334219,220796_x_at,0.45,0.005226742,3.266,0.01364,7.66478,0.00007,0.00105,solute carrier family 35,19,-,"16524478,","345,","16537255,16537346,","91,191,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
134,3836841,CALM3,200622_x_at,5.457,0.00023483,200623_s_at,1.476,0.010950813,3.698,0.00166,7.64688,0.00004,0.00016,calmodulin 3 (phosphorylase kinase,19,+,"51803290,51803577,51803942,51804221,","147,108,136,137,","51805438,","338,",yes,no,Tandem 3' UTR,Shorten,---
135,3928866,SFRS15,226082_s_at,1.193,0.278809852,222310_at,0.549,0.026001803,2.172,0.00777,7.60594,0.00115,0.00959,splicing factor,21,-,"31965254,31965292,","38,457,","31994958,","225,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
142,3942838,LIMK2,202193_at,2.906,0.00090861,210582_s_at,1.292,0.002445303,2.249,0.00967,7.34306,0,0.00083,LIM domain kinase 2 ,22,+,"30005726,","307,","30005141,","533,",yes,no,Tandem 3' UTR,Lengthen,---
143,4017810,ACSL4,202422_s_at,6.11,0.000665012,1557419_a_at,1.572,0.032614668,3.888,0.01198,7.33073,0.00006,0.00129,acyl-CoA synthetase long-chain family member 4 ,X,-,"108771246,","548,","108815271,","264,",no,---,Unclassified,---,---
145,3824427,FAM129C,1569422_at,0.402,0.010583759,230983_at,0.045,0.00010246,8.887,0.00045,7.28217,0.00001,0.00024,family with sequence similarity 129,19,+,"17515278,","241,","17525089,","342,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
146,3595441,GCOM1,212241_at,1.683,0.029633451,228568_at,0.362,0.00010257,4.653,0.00136,7.23675,0.0002,0.00004,GRINL1A complex locus ,15,+,"55791491,55794025,","187,301,","55764291,","515,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
147,2378180,C1orf107,204700_x_at,1.438,0.183265345,220251_at,0.463,0.006382114,3.106,0.00255,7.23019,0.00023,0.00183,chromosome 1 open reading frame 107 ,1,+,"208091602,","516,","208096980,208097314,","334,150,",yes,no,Tandem 3' UTR,Shorten,---
149,3981120,OGT,207563_s_at,3.158,0.000434886,209240_at,0.74,0.082050846,4.266,0.00003,6.9855,0.00002,0.00018,O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) ,X,+,"70704081,70704567,70710194,","246,124,139,","70711841,","458,",yes,no,Tandem 3' UTR,Shorten,---
152,3224650,DENND1A,219763_at,7.624,3.83E-05,226849_at,1.699,0.014518698,4.488,0.00004,6.93481,0.00021,0.00005,DENN,9,-,"125203786,","205,","125181793,","519,",yes,yes,Alt 3' TE,More 5' TE,Alt 3' Splice Site
153,3151970,MTSS1,203036_s_at,0.455,0.000924674,203037_s_at,0.046,5.32E-05,9.796,0.00005,6.92424,0,0.00002,metastasis suppressor 1 ,8,-,"125634331,","548,","125632248,","466,",yes,no,Tandem 3' UTR,Shorten,---
154,2781693,CASP6,209790_s_at,4.854,0.000767977,211464_x_at,1.51,0.002920672,3.215,0.00288,6.91695,0,0.00089,caspase 6,4,-,"110829499,","559,","110829317,110829476,110829599,110829646,110829783,","153,123,47,137,15,",yes,no,Internal Event,Inclusion,Within 3' TE
159,2962998,KIAA1009,206005_s_at,1.155,0.199823429,206006_s_at,0.559,0.009227204,2.067,0.01704,6.76106,0.00212,0.00192,KIAA1009 ,6,-,"84891376,84892815,84913124,","338,135,48,","84890774,","489,",yes,no,Tandem 3' UTR,Shorten,---
162,3553803,TRMT61A,1554317_s_at,1.192,0.009493965,221907_at,0.84,0.065436963,1.418,0.00379,6.6667,0.00775,0.00224,tRNA methyltransferase 61 homolog A (S. cerevisiae) ,14,+,"103070637,103070722,103070729,103070750,103070766,103070965,103070987,","82,6,21,16,199,22,183,","103071609,","523,",yes,no,Tandem 3' UTR,Shorten,---
163,2438892,FCRL5,224405_at,11.807,0.000381031,224406_s_at,2.206,0.032376454,5.351,0.00315,6.65831,0.00004,0.00283,Fc receptor-like 5 ,1,-,"155768407,","223,","155749826,","569,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
167,3787031,C18orf25,217508_s_at,1.305,0.179113534,226406_at,0.658,0.005233958,1.983,0.00479,6.52364,0.00388,0.00512,chromosome 18 open reading frame 25 ,18,+,"42097119,","440,","42100404,","375,",yes,no,Tandem 3' UTR,Shorten,---
173,3016692,PRKRIP1,222615_s_at,1.445,0.003665845,218378_s_at,0.81,0.113502665,1.783,0.00133,6.34825,0.00466,0.00131,PRKR interacting protein 1 (IL11 inducible) ,7,+,"101834884,101852465,","66,338,","101853536,","555,",yes,no,Tandem 3' UTR,Shorten,---
176,3592054,TRIM69,232792_at,6.893,0.000455554,1568592_at,1.855,0.025187322,3.717,0.00213,6.28932,0.00007,0.0027,tripartite motif-containing 69 ,15,+,"42846725,","498,","42811745,","568,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
180,3140640,STAU2,204226_at,4.058,0.000382448,227179_at,1.49,0.02182992,2.724,0.00277,6.18135,0.00024,0.00111,staufen,8,-,"74624440,","501,","74495201,","516,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
181,3937183,DGCR8,91617_at,1.604,0.021669352,219811_at,0.827,0.041928691,1.941,0.0113,6.16784,0.00017,0.00207,DiGeorge syndrome critical region gene 8 ,22,+,"18478898,","495,","18453713,","530,",yes,yes,Alt 5' Initiation,More 3' start,---
189,2549092,SOS1,212780_at,1.452,0.18637893,230337_at,0.305,0.00148493,4.755,0.0006,5.86088,0.00039,0.00009,son of sevenless homolog 1 (Drosophila) ,2,-,"39065456,","463,","39069631,","297,",no,---,Unclassified,---,---
192,3020496,ST7,207871_s_at,14.217,0.001388429,207524_at,1.157,0.571474716,12.283,0.00068,5.764,0.00299,0.00051,suppression of tumorigenicity 7 ,7,+,"116657051,","240,","116650427,","468,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
193,3757770,STAT5B,205026_at,1.589,0.080302323,1555088_x_at,0.486,0.001481025,3.268,0.0116,5.75699,0.00027,0.00059,signal transducer and activator of transcription 5B ,17,-,"37607040,37607883,37608300,","368,108,53,","37623537,","193,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
196,3472468,RBM19,205115_s_at,2.017,0.005244312,206019_at,0.882,0.270615713,2.288,0.00396,5.64483,0.00474,0.00111,RNA binding motif protein 19 ,12,-,"112744295,","521,","112738977,","539,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
201,3576441,CCDC88C,215343_at,4.548,0.000133549,231288_at,1.357,0.00342238,3.351,0.00018,5.52494,0.00002,0.00003,coiled-coil domain containing 88C ,14,-,"90914775,","487,","90878289,90879695,90895738,","271,59,73,",no,Yes,Unclassified,---,---
207,3226661,ZER1,202456_s_at,1.315,0.197231387,202452_at,0.681,0.003116236,1.929,0.01431,5.39133,0.00947,0.00757,zer-1 homolog (C. elegans) ,9,-,"130533278,130533362,130535525,130537433,130542030,","83,132,103,98,121,","130531923,","555,",yes,no,Tandem 3' UTR,Shorten,---
208,2818454,XRCC4,205072_s_at,6.331,1.05E-05,210812_at,1.823,0.016986574,3.474,0.00013,5.38213,0.00165,0.00015,X-ray repair complementing defective repair in Chinese hamster cells 4 ,5,+,"82684832,82685017,","184,211,","82642376,","243,",yes,yes,Alt 3' TE,More 3' TE,Alt 3' Splice Site
209,3961622,SLC25A17,211754_s_at,3.139,0.000529977,214210_at,1.39,0.040119738,2.259,0.00875,5.34722,0.00113,0.00234,solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein,22,-,"39496102,","501,","39495661,","292,",yes,no,Tandem 3' UTR,Shorten,---
211,3217123,TRIM14,203148_s_at,4.661,0.000123892,203147_s_at,1.379,0.111756315,3.38,0.00095,5.30958,0.00325,0.00034,tripartite motif-containing 14 ,9,-,"99886578,","451,","99888933,","508,",yes,no,Tandem 3' UTR,Lengthen,---
213,3014855,ZKSCAN5,203730_s_at,2.297,0.008646824,203731_s_at,1.122,0.229595728,2.047,0.02525,5.25928,0.00347,0.00977,zinc finger with KRAB and SCAN domains 5 ,7,+,"98967722,","493,","98968819,","480,",yes,no,Tandem 3' UTR,Shorten,---
216,3967689,STS,203767_s_at,3.292,0.000790158,203768_s_at,1.196,0.182130657,2.753,0.00198,5.20689,0.00405,0.00073,steroid sulfatase (microsomal),X,+,"7280649,7280997,","348,35,","7279396,7279645,","249,303,",yes,no,Tandem 3' UTR,Lengthen,---
217,2368198,CACYBP,210691_s_at,2.848,0.001263766,211761_s_at,1.378,0.038156188,2.066,0.00135,5.20429,0.00074,0.00637,calcyclin binding protein ,1,+,"173242889,173244367,173244487,173245682,173245759,","67,96,3,76,189,","173246180,","361,",yes,no,Tandem 3' UTR,Shorten,---
219,3721400,EIF1,211956_s_at,1.241,0.056753312,212225_at,0.769,0.003286636,1.614,0.01217,5.14948,0.00236,0.00376,eukaryotic translation initiation factor 1 ,17,+,"37098804,37099555,37099865,37100559,","43,164,102,203,","37099719,37099867,","148,7,",no,---,Unclassified,---,---
220,3567469,TRMT5,227653_at,3.371,0.000224832,221952_x_at,1.222,0.10948307,2.758,0.00428,5.12816,0.00426,0.00016,TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) ,14,-,"60511537,60511945,","128,380,","60507984,60508401,60508411,","417,10,86,",yes,no,Tandem 3' UTR,Shorten,---
224,3223687,PHF19,227211_at,4.569,0.000124229,225533_at,1.55,0.078623059,2.948,0.00207,5.04574,0.00306,0.00177,PHD finger protein 19 ,9,-,"122671696,","205,","122657868,","500,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
225,2796510,MLF1IP,229305_at,7.03,1.44E-06,229304_s_at,2.227,0.000888396,3.157,0.00026,4.98449,0.00061,0.00002,MLF1 interacting protein ,4,-,"185852293,","389,","185852691,","138,",yes,no,Tandem 3' UTR,Lengthen,---
230,3129121,CCDC25,222525_s_at,2.538,0.000226317,218125_s_at,1.293,0.017862654,1.963,0.00009,4.94575,0.00202,0.0005,coiled-coil domain containing 25 ,8,-,"27648523,","524,","27646800,","545,",yes,no,Tandem 3' UTR,Shorten,---
233,2615360,TGFBR2,207334_s_at,0.27,0.004461255,208944_at,0.026,6.76E-05,10.422,0.00012,4.93158,0,0.00037,transforming growth factor,3,+,"30688908,30690600,30704879,30707915,","25,142,128,181,","30710001,","321,",yes,no,Tandem 3' UTR,Shorten,---
234,3771336,EXOC7,212026_s_at,1.499,0.100124283,214802_at,0.619,0.003735316,2.422,0.02163,4.92741,0.00073,0.00101,exocyst complex component 7 ,17,-,"71591274,71591681,71591923,71592192,71592989,71593352,","152,134,42,64,96,79,","71600264,","224,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
236,2557668,WDR92,204507_s_at,2.685,0.015120785,204506_at,0.927,0.532570168,2.897,0.00272,4.90849,0.00803,0.0055,WD repeat domain 92 ,2,-,"68260379,","524,","68259538,68259648,","110,405,",yes,no,Tandem 3' UTR,Shorten,---
243,3160773,RCL1,222666_s_at,2.462,0.000761786,218544_s_at,1.18,0.101849685,2.086,0.00074,4.74416,0.00554,0.00087,RNA terminal phosphate cyclase-like 1 ,9,+,"4834546,4839446,4850124,","135,104,262,","4850540,4850635,","94,263,",yes,no,Tandem 3' UTR,Shorten,---
244,3744263,AURKB,209464_at,9.753,0.000121964,239219_at,1.903,0.000408782,5.126,0.00191,4.72038,0,0.00007,aurora kinase B ,17,-,"8048878,8049258,8049306,8050533,8050792,","209,45,127,149,37,","8053937,8054426,","488,42,",no,No,Unclassified,---,---
246,3855538,MEF2B,1553978_at,2.655,0.011536787,209926_at,0.927,0.52099682,2.863,0.01746,4.71133,0.00973,0.00378,myocyte enhancer factor 2B ,19,-,"19148721,19148822,","101,316,","19153764,","476,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
250,3517594,DIS3,222607_s_at,2.525,0.018638316,214194_at,0.885,0.363165518,2.855,0.01116,4.67624,0.00085,0.00668,DIS3 mitotic control homolog (S. cerevisiae) ,13,-,"72231212,","438,","72227613,","455,",yes,no,Tandem 3' UTR,Shorten,---
251,3421446,CPSF6,202469_s_at,2.516,0.00081326,202470_s_at,1.36,0.003529527,1.851,0.02166,4.6711,0.00006,0.00263,cleavage and polyadenylation specific factor 6,12,+,"67942464,67949558,","145,390,","67950714,","508,",yes,no,Tandem 3' UTR,Shorten,---
256,3754227,MYO19,225947_at,2.019,0.000813249,219320_at,1.241,0.005678919,1.628,0.00523,4.59997,0.00058,0.00206,myosin XIX ,17,-,"31925816,","488,","31943062,31943584,","399,80,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
261,3674886,C16orf35,210672_s_at,2.507,0.000805761,203289_s_at,0.863,0.224425039,2.904,0.0029,4.45697,0.00113,0.00002,chromosome 16 open reading frame 35 ,16,-,"75833,","493,","78777,79710,82593,83216,","111,190,130,62,",no,No,Unclassified,---,---
267,2426791,CLCC1,207855_s_at,4.369,0.000119747,213628_at,1.767,0.002563065,2.473,0.00491,4.35303,0.00007,0.00078,chloride channel CLIC-like 1 ,1,-,"109276430,","198,","109274111,","521,",yes,no,Tandem 3' UTR,Shorten,---
283,2817837,MSH3,210947_s_at,2.432,0.00012331,205887_x_at,1.327,0.017882368,1.832,0.00293,4.06047,0.00566,0.00071,mutS homolog 3 (E. coli) ,5,+,"80185786,80196387,80204690,","105,130,145,","80207807,80208210,","396,159,",no,No,Unclassified,---,---
284,3911217,PMEPA1,217875_s_at,0.515,0.080124577,222450_at,0.071,0.000588093,7.229,0.00138,4.04016,0.00016,0.0091,prostate transmembrane protein,20,-,"55660260,","562,","55656936,","436,",yes,no,Tandem 3' UTR,Shorten,---
288,3304012,MGEA5,200898_s_at,1.176,0.173819382,223494_at,0.587,0.009464624,2.001,0.01036,3.96053,0.00262,0.0015,meningioma expressed antigen 5 (hyaluronidase) ,10,-,"103535929,103536187,103537110,","255,147,127,","103546998,","373,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
318,3416522,COPZ1,222386_s_at,2.962,0.000233555,217726_at,1.594,0.016848414,1.858,0.00067,3.53498,0.00272,0.00892,coatomer protein complex,12,+,"53028051,53029670,53030526,53030880,","51,39,354,30,","53031368,","496,",yes,no,Tandem 3' UTR,Shorten,---
342,2329752,ZMYM4,202049_s_at,2.776,0.003638587,202050_s_at,1.299,0.056734744,2.137,0.00311,3.30449,0.00032,0.00093,zinc finger,1,+,"35657777,","573,","35658988,","522,",yes,no,Tandem 3' UTR,Shorten,---
351,3706219,SRR,222844_s_at,4.378,0.000233701,219205_at,1.546,0.000212329,2.832,0.00129,3.20456,0,0.00176,serine racemase ,17,+,"2173213,2173698,","176,313,","2174859,","414,",yes,no,Tandem 3' UTR,Shorten,---
355,3136782,NSMAF,1558775_s_at,2.014,0.00279255,232148_at,0.781,0.30286192,2.579,0.01093,3.14469,0.00394,0.00345,neutral sphingomyelinase (N-SMase) activation associated factor ,8,-,"59698855,59706608,59710301,59710417,59710580,59718096,","38,51,37,68,79,65,","59660580,","441,",yes,yes,Internal Event,Exclusion,
365,3409364,KLHDC5,225963_at,3.547,5.01E-05,225961_at,1.854,0.009152225,1.914,0.01847,3.05994,0.00416,0.00804,kelch domain containing 5 ,12,+,"27835983,27841914,","118,424,","27844391,27844444,27844470,27844479,27844490,27844503,27844516,27844551,","53,26,8,11,13,13,32,295,",yes,no,Tandem 3' UTR,Shorten,---
405,3408018,ETNK1,222262_s_at,4.205,0.000672828,226432_at,1.64,0.080298913,2.565,0.00014,2.64986,0.0008,0.00356,ethanolamine kinase 1 ,12,+,"22717753,22726481,22728683,22729082,","108,59,74,277,","22733015,","534,",yes,no,Tandem 3' UTR,Shorten,---
416,3923257,PDXK,218018_at,2.253,0.012151887,222492_at,1.261,0.099752313,1.787,0.00897,2.57112,0.00074,0.00396,pyridoxal (pyridoxine,21,+,"44000498,","351,","44002704,","498,",yes,no,Tandem 3' UTR,Shorten,---
422,3848689,ELAVL1,201727_s_at,3.44,0.003003339,227746_at,0.787,0.029462849,4.37,0.00186,2.48535,0.00007,0.00042,ELAV (embryonic lethal,19,-,"7934274,7934355,7938448,","80,336,91,","7930234,","433,",yes,no,Tandem 3' UTR,Shorten,---
432,2821194,CAST,208908_s_at,1.283,0.35114782,212586_at,0.491,0.000940597,2.612,0.00129,2.41853,0.00773,0.00461,calpastatin ,5,+,"96127563,96128897,96129366,96131990,96133103,96134099,","42,45,93,72,59,118,","96135556,96135713,","157,357,",yes,no,Tandem 3' UTR,Shorten,---
461,3845365,TCF3,209152_s_at,2.02,5.65E-06,215260_s_at,0.667,0.006016432,3.026,0.00003,2.14984,0.00075,0,transcription factor 3 (E2A immunoglobulin enhancer binding factors E12,19,-,"1562197,1562455,","258,154,","1560625,","512,",yes,no,Tandem 3' UTR,Shorten,---
463,3853814,EPS15L1,222113_s_at,2.389,0.003477253,232438_at,0.871,0.219590241,2.743,0.00137,2.12949,0.00203,0.00158,epidermal growth factor receptor pathway substrate 15-like 1 ,19,-,"16333417,","187,","16327103,","450,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
480,3728147,MSI2,1552364_s_at,3.314,0.000180423,243579_at,1.584,0.076859224,2.093,0.01687,1.94717,0.0018,0.00705,musashi homolog 2 (Drosophila) ,17,+,"53059589,53084463,53107331,53109346,53111908,","59,58,155,73,170,","52689467,52689825,52690629,52694510,52706627,","31,82,85,42,168,",yes,yes,Alt 5' Initiation,More 3' start,---
485,3234760,CUGBP2,1554569_a_at,1.7,0.006131244,1556323_at,0.859,0.178872534,1.979,0.0053,1.88468,0.00108,0.00821,CUG triplet repeat,10,+,"11411055,","192,","11403093,","365,",no,No,Unclassified,---,---
492,2448232,TPR,215220_s_at,2.183,0.004792558,228709_at,0.795,0.304094812,2.746,0.00502,1.84392,0.00303,0.00386,translocated promoter region (to activated MET oncogene) ,1,-,"184575402,184576782,","125,122,","184548162,184548596,","426,101,",no,No,Unclassified,---,---
508,3474228,RAB35,205461_at,3.877,0.000513629,225620_at,1.655,0.008739296,2.343,0.01222,1.74881,0.00004,0.00022,RAB35,12,-,"119019536,119020997,119021216,119026012,119030603,","24,125,125,124,41,","119017977,","525,",yes,no,Tandem 3' UTR,Shorten,---
556,3820921,SMARCA4,208793_x_at,2.031,0.001346751,1569073_x_at,0.745,0.057966427,2.728,0.00391,1.41055,0.0017,0.00019,SWI,19,+,"11005440,11005798,11006589,11012982,","101,78,219,87,","11003851,11003897,11003935,11003961,11004049,11004061,11004080,11004088,11004097,","46,38,26,88,12,19,8,9,175,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
572,2691475,RABL3,226089_at,3.244,0.000875149,226090_x_at,1.607,0.053979264,2.018,0.00953,1.28541,0.00211,0.00086,RAB,3,-,"121891181,121891985,121895689,121899959,","244,39,72,73,","121889381,121889511,","130,321,",yes,no,Tandem 3' UTR,Shorten,---
588,3435490,DENR,234915_s_at,3.665,0.003448215,231896_s_at,1.627,0.02377142,2.253,0.00327,1.18851,0.00002,0.00627,density-regulated protein ,12,+,"121819313,121819533,121819751,121819813,","108,218,62,138,","121820877,","357,",yes,no,Tandem 3' UTR,Shorten,---
596,3739162,TBCD,229192_s_at,2.287,0.006645598,211052_s_at,1.401,0.160913223,1.633,0.0681,1.13787,0.00097,0.00568,tubulin folding cofactor D ,17,+,"78479106,78480277,78480526,","47,159,37,","78489213,78490531,78492563,78493613,","88,110,85,227,",yes,yes,Alt 3' TE,More 5' TE,Alt PolyA
632,3717052,---,212676_at,3.891,0.000118904,212678_at,1.562,0.022623729,2.491,0.00019,0.90713,0.00101,0.00428,---,17,+,"26726502,","425,","26727911,26727984,","73,333,",yes,no,Tandem 3' UTR,Shorten,---
653,3607332,ACAN,205679_x_at,0.752,0.070930422,1554950_at,0.449,0.001757902,1.672,0.00473,0.76165,0.00061,0.00227,aggrecan ,15,+,"87216250,87217115,87218076,87218639,","70,145,183,138,","87195202,","535,",yes,yes,Alt 3' TE,More 3' TE,Alt PolyA
717,3334137,OTUB1,201245_s_at,2.121,0.011755674,201246_s_at,1.185,0.001388647,1.79,0.03314,0.49086,0.00548,0.00013,OTU domain,11,+,"63520965,63521097,63521396,63521430,","24,195,34,228,","63521927,","327,",yes,no,Tandem 3' UTR,Shorten,---
797,2361154,SYT11,209198_s_at,5.505,8.44E-06,209197_at,2.683,0.000374384,2.052,0.00107,0.24853,0.00043,0.0021,synaptotagmin XI ,1,+,"154118883,","471,","154120907,","487,",yes,no,Tandem 3' UTR,Shorten,---
899,2400718,USP48,225925_s_at,2.518,9.62E-05,220079_s_at,1.395,0.035130988,1.806,0.00148,0.06771,0.00324,0.00094,ubiquitin specific peptidase 48 ,1,-,"21878333,21879887,","186,29,","21878000,","194,",yes,no,Tandem 3' UTR,Shorten,---