Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae

TABLE 2.

Plasmids

Name Features/construction Source
pGEM7zf+ Standard cloning vector Promega
pGEMSLC1r BamHI-KpnI PCR fragment of DYN2 inserted into pGEM7Zf+ This work
pGAC14 ACT1-CUP1 splicing reporter, GPD promoter; TRP1; 2u Lesser and Guthrie 1993
pGAC14Uf URA3 gene insertion into Bg1II site of TRP1 gene of pGAC14 This work
pGSC1t pGAC14 ACT1 replaced by DYN2 frag.; CUP1 in E2+ frame This work
pGSC1u Same as pGSC1t except pGAC14Uf is parental plasmid This work
pGSC3t pGSC1t KpnI (blunted), religated; CUP1 in E2 frame This work
pGSC3u pGSC1u KpnI (blunted), religated; CUP1 in E2 frame This work
pGSC621 pGSC1t with the I1ΔBP mutation in DYN2 This work
pGSC431 pGSC1t with the I2Δ5′ss mutation in DYN2 This work
pU[−2]C DYN2 intron 1 branchpoint sequence U[−2]C; E2 frame This work
pU[−1]A DYN2 intron 1 branchpoint sequence U[−1]A; E2 frame This work
pU[−1]A* Same as pU[−1]A except in E2+ frame This work
pU[−1]G DYN2 intron 1 branchpoint sequence U[−1]G; E2 frame This work
pU[1]A DYN2 intron 1 branchpoint sequence U[1]A; E2 frame This work
pA[2]G DYN2 intron 1 branchpoint sequence A[2]G; E2 frame This work
pGSlacIAt pU[−1]G carrying the lac operator in intron 2 This work
pRS316 Empty vector control; URA3; CEN Sikorski and Hieter 1989
pJD4 PPR2; URA3; CEN Davie and Kane 2000
pFL44D Empty vector control; URA3, 2u Archambault et al. 1992
pPPR2 PPR2 gene inserted into pFL44D Archambault et al. 1992

This Article

  1. RNA 9: 993-1006