SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs

TABLE 1.

Bacterial strains and plasmids used in this study

Strain/ plasmid Relevant genotype and property Source
Strain
    PP47 crp Aiba et al. 1982
    PP47ssrA PP47ΔssrA::Kan Abo et al. 2000
    W3110 Wild-type Laboratory stock
    TA331 W3110ΔssrA::FRT Abo et al. 2002
    TA371 W3110ssrADD-FRT Abo et al. 2002
    YA002 PP47Δmr-FRT This work
    YA004 PP47ΔssrA::Kan Δmr-FRT This work
Plasmid
    pHA7 Derivative of pBR322 carrying the crp gene expressed from the bla promoter Aiba et al. 1982
    pHA7M9 Derivative of pHA7 in which the crp terminator is mutated by a 2-base substitution in the hairpin region This work
    pHA7M6 Derivative of pHA7 in which the crp terminator is extensively mutated Abe et al. 1999
    pHA7S1 Derivative of pHA7 in which the TAA stop codon of crp was changed to AAA Ueda et al. 2002
    pYY100 Derivative of pBR322 carrying a variant crp encoding His6-CRP with the wild-type terminator This work
    pYY101 Derivative of pYY101 in which the crp terminator is mutated by a 2-base substitution in the hairpin region This work
    pQE-80L Expression vector for N-terminally His6-tagged protein QIAGEN
    pMelR Derivative of pQE-80L carrying a variant melR encoding His6-MelR This work
    pSoxR Derivative of pQE-80L carrying a variant soxR encoding His6-SoxR This work

This Article

  1. RNA 9: 408-418