Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 Å resolution

TABLE 2.

Torsion angles

Nucleotide χa α β γ δ ε ζ
aBackbone torsion angles: 5′→O3′-P−αO5′−βC5′−γC4′−δC3′−εO3′−ζP−O5′→3′.
bThe delta is the amount the values differs from A-form values (Gelbin et al. 1996).
cUnderlined values differ from A-form values by more than 36°.
5′ closing pair 200 ± 5 (Δ7)b 299 ± 8 (Δ14) 171 ± 4 (−Δ13) 47 ± 4 (−Δ7) 81 ± 1 (Δ0) 213 ± 4 (−Δ1) 293 ± 3 (Δ4)
G 195 ± 7 (Δ2) 291 ± 5 (Δ6) 177 ± 3 (−Δ7) 49 ± 4 (−Δ4) 80 ± 2(−Δ2) 224 ± 4 (Δ10) 296 ± 4 (Δ7)
N 196 ± 8 (Δ3) 168 ± 5 (Δ117)c 140 ± 8 (−Δ44) 54 ± 5 (Δ1) 87 ± 4 (Δ6) 231 ± 6 (Δ17) 282 ± 9 (−Δ11)
R 210 ± 12 (Δ17) 298 ± 6 (Δ13) 152 ± 10 (−Δ32) 64 ± 6 (Δ11) 87 ± 3 (Δ6) 206 ± 4 (−Δ8) 291 ± 12 (−Δ6)
A 219 ± 8 (Δ26) 289 ± 9 (Δ4) 173 ± 8 (−Δ11) 52 ± 4 (−Δ1) 87 ± 3 (Δ6) 218 ± 3 (Δ4) 296 ± 8 (−Δ1)
3′ closing pair 200 ± 5 (Δ7) 139 ± 8 (Δ146) 227 ± 11 (Δ43) 188 ± 9 (Δ135) 86 ± 3(Δ5) 221 ± 6 (Δ7) 298 ± 8 (Δ1)

This Article

  1. RNA 9: 355-363