A role for the exosome in the in vivo degradation of unstable mRNAs

TABLE 1.

Plasmids used in this study

Transgene Selectable marker
Plasmid (pHD #) 5′-UTR ORF 3′ UTR 5′ UTR ORF 3′ UTR Promoter Integration locus Parent plasmid (pHD #) Referencesa
a(1) Biebinger et al. 1997; (2) L. Storm, D. Horn, and C. Clayton, in prep.; (3) C. Hartmann and C. Clayton, unpubl.; (4) Estévez et al. 2001; (5) this study; (6) Irmer and Clayton 2001; (7) Quijada et al. 2002.
bThese plasmids are similar to those described in Estévez et al. (2001) except that the 3′ UTRs following the RNAi stem-loop sequences are from a VSG locus.
cThese plasmids are similar to those described in Irmer and Clayton (2001) or Quijada et al. (2002) except that the selectable marker is PAC and the Tet operator sequence is absent.
1313 EP1 2× TetR ACT, VSG ACT BLE ACT TUB 449 1, 2
514 EP1 T7 RNA POL ACT ACT NEO ACT TUB 514 3
1153b EP1 RRP4 RNAi VSG ACT HYG ACT EPIT1 RRNA 1146 4, 5
1154b EP1 RRP45 RNAi VSG ACT HYG ACT EPITi RRNA 1146 4, 5
1199 EP1 CSL4 RNAi ACT ACT HYG ACT EPITi RRNA 1146 4
1413c EP1 CAT EP1 ACT PAC ΔALD T7 RRNA 774 5, 6
1344c EP1 CAT ACT ACT PAC ΔALD T7 RRNA 789, 1034 5, 6
1414c EP1 CAT ep1ΔURE ACT PAC ΔALD T7 RRNA 775 5, 6
1415c EP1 CAT PGKB PGKC PAC ΔALD T7 RRNA 869 5, 7
1417c EP1 CAT pgkbΔURE PGKC PAC ΔALD T7 RRNA 1044 5, 7
1416c EP1 CAT PPDK ACT PAC ΔALD T7 RRNA 1317 5, 7
1343c EP1 CAT G30C30EP1 ACT PAC ΔALD T7 RRNA 1413, 921 5, 6

This Article

  1. RNA 9: 1491-1501