TABLE 3.
Root-mean-square deviation between ribosomal hook-junctions and BCh12 calculated using the phosphorus atom positionsa
| BCh12 | A | B | C | D | |
|---|---|---|---|---|---|
| Nucleotides compared: BCh12 (S5–S10 and L7–L10); A, T. thermophilus 16S rRNA (G527–C532 and U481–C484), pdb: li94; B, D. radiodurans 23S rRNA (G645–U650 and G637–C640), pdb: 1kc9; C, H. marismortui 23S rRNA (A2255–A2260 and U2242– U2246); pdb: 1jj2; D, D. radiodurans 23S rRNA (C610–C615 and U667–U670) pdb: 1kc9. | |||||
| aRight side of table shows values for only the turning strand (corresponding to S5–S10 of BCh12), left side show overlay of the complete junction (S5–S10 and L7–L10). | |||||
| BCh12 | 1.66 | 1.30 | 2.14 | 2.73 | |
| A | 2.23 | 1.03 | 3.09 | 2.25 | |
| B | 2.61 | 1.18 | 2.55 | 2.62 | |
| C | 1.86 | 3.18 | 3.38 | 4.47 | |
| D | 3.13 | 2.13 | 2.40 | 4.48 | |
