Mechanism of molecular interactions for tRNAVal recognition by valyl-tRNA synthetase

TABLE 1.

The kinetic analyses of the T. thermophilus ValRS and tRNAVal (CAC) mutants

ValRS Transcript KM(tRNA) (μM) kcat (sec−1) kcat/KM (sec−1 • μM−1) (relative)
Wild-type 1.5 ± 0.44 6.7 ± 2.0 4.4 (1)
Δ(795–862) 42 ± 8.2 0.36 ± 0.16 8.5 × 10−3 (1.9 × 10−3)
R818A/R843A 31 ± 14 4.3 ± 1.3 1.4 × 10−1 (3.2 × 10−2)
ValRS Transcript KM(tRNA) (μM) kcat (sec−1) kcat/KM (sec−1 • μM−1) (relative)
Wild-type 0.70 ± 0.21 1.3 ± 0.40 1.9 (1)
Δ(795–862) 36 ± 1.6 1.8 × 10−2 ± 9.4 × 10−3 5.0 × 10−4 (2.6 × 10−4)
R818A/R843A 18 ± 7.3 1.1 ± 0.12 6.1 × 10−2 (3.2 × 10−2)
ValRS Transcript KM(tRNA) (μM) kcat (sec−1) kcat/KM (sec−1 • μM−1) (relative)
Wild-type 1.5 ± 0.44 6.7 ± 2.0 4.4 (1)
G18U 13 ± 5.6 4.2 ± 1.1 3.2 × 10−1 (7.2 × 10−2)
G19C 27 ± 1.5 1.2 ± 0.3 4.4 × 10−2 (1.0 × 10−2)
G18U/G19C 31 0.21 6.8 × 10−3 (1.5 × 10−3)
G19C/C56G 5.5 ± 0.4 5.3 ± 0.1 9.6 × 10−1 (2.2 × 10−1)

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  1. RNA 9: 100-111