Novel trinucleotide mRNA capping reagents: improved synthetic route and efficient cotranscriptional incorporation in mRNA

TABLE 3.

Synthesized TCPs with nucleotide and/or internucleotide linkage (p) modifications

7mG ppp N1pN2
N7-methylguanosine Series 3-A
7mGm ppp N1pN2
N7-methyl-3′-O-methylguanosine Series 3-B
TCP N1 P N2 TCP N1 p N2
1-1A Am PDE G 1-2A Am PDE G
3-1A Dm PDE G 3-1B Dm PDE G
3-2B12 Dm PSDE (D1+D2) G
3-3A ALNA PDE G 3-3B ALNA PDE G
3-4A1 ALNA PSDE (D1) G
3-4A2 ALNA PSDE (D2) G
3-5A ALNA PDE U 3-5B ALNA PDE U
3-6B1 6mAm PSDE (D1) G
3-6B2 6mAm PSDE (D2) G
3-7B1 Am PSDE (D1) G
3-7B2 Am PSDE (D2) G
3-8A1 Af PSDE (D1) G
3-8A2 Af PSDE (D2) G
3-9A Af PDE U 3-9B Af PDE U
3-10A Am PDE Gm 3-10B Am PDE Gm
3-11A Am PDE U 3-11B Am PDE U
3-12A 6mAm PDE A 3-12B 6mAm PDE A
3-13A 6mAm PDE U 3-13B 6mAm PDE U
3-14B Am PDE A
3-15A Gm PDE G 3-15B Gm PDE G
  • (A) Adenosine; (Am) 2′-O-methyladenosine; (6mAm) N6-methyl-2′-O-methyladenosine; (Af) 2′-Fluoroadenosine; (ALNA) LNA-adenosine; (G) guanosine; (Gm) 2′-O-methylguanosine; (Dm) 2′-O-methyl-2,6-diaminopurine nucleoside; (U) uridine; (PDE) phosphodiester; (PSDE) phosphorothioate diester; (D1) diastereomer 1; (D2) diastereomer 2.

This Article

  1. RNA 32: 195-214