TABLE 1.
Frequency of reads with mRNA deletion or substitution in RNA sequencing data or CLASH data
| Library | Read type | # Reads with deletion | # Reads with substitution | # Total reads | % Reads with mutation |
|---|---|---|---|---|---|
| mRNA | Non-hybrid (mRNA only) | 5166.5 | 281,215 | 20,038,571 | Deletion: 0.026% Substitution: 1.40% |
| PRG-1 CLASH | Non-hybrid (mRNA only) | 265,382 | 270,426.5 | 4,053,251 | Deletion: 6.65% Substitution: 6.76% |
| ALG-1 iCLIP |
Non-hybrid (mRNA only) | 875,559.5 | 1,120,123 | 15,107,177 | Deletion: 5.8% Substitution: 7.41% |
| PRG-1 CLASH | Hybrid | 108,970 | 129,279 | 4,017,410 | Deletion: 2.8% Substitution: 3.27% |
| ALG-1 iCLIP | Hybrid | 4897 | 6155 | 133,974 | Deletion: 4.59% Substitution: 3.67% |
