Detailed information of rRF 28S-47-67. (A) rRF sequence, origin, and group information. (B) Sequence logo of binding motif in the rRF. (C,D) Top 2 target genes for the rRF. With no UH filter at this stage, target genes with at least one UH are displayed. Total number of UH are shown, and only those UH supported by at least five chimeric reads are counted for the number of reads supporting UHs. (E,F) The secondary structures show the potential hybridization pattern between the rRF and target RNAs. Binding motif is highlighted in red, using the whole sequence in B, ignoring its bit scores. Because the motif is established via statistical analysis of all targets of rRF 28S-47-67 with MEME motif finder, this whole sequence does not exactly match a base-pairing region with every single target. Hyperlink “Click to see raw chimeric reads” allows users to see specific CLASH reads utilized in the analysis of these rRFs and targets. A red line in E indicates a hairpin sequence in the target RPL41 (see text for explanations).
