TABLE 3.
List of targets in the Rzs test set with only secondary interactions in their native structures, giving PDB code and sequence length of each in parentheses
| Rzs secondary test set | ||||
|---|---|---|---|---|
| 1KXK (70) | 1U9S (161) | 2KXM (27) | 2LU0 (49) | 2MI0 (22) |
| 2MIS (26) | 2MTJ (47) | 2N3Q (62) | 2N3R (62) | 2OEU (66) |
| 2OIU (71) | 2QUS (69) | 2R8S (159) | 359D (44) | 3BBM (67) |
| 3D2V (77) | 3E5C (53) | 3F2X (112) | 3GS5 (64) | 3OXE (88) |
| 3PDR (161) | 4GXY (172) | 4R4V (186) | 4RUM (92) | 4Y1M (107) |
| 4YAZ (84) | 5DH6 (68) | 5LYS (57) | 5NDH (16) | 5T83 (89) |
| 5U3G (85) | 5U6Z (68) | 5UZ6 (32) | 6AZ4 (42) | 6C27 (47) |
| 6CB3 (101) | 6CK5 (117) | 6EZ0 (27) | 6HC5 (18) | 6JQ5 (163) |
| 6N2V (99) | 7EAG (41) | 7ELQ (45) | 7MLW (128) | 7Q80 (68) |
| 7TZS (80) | ||||
| Mean quality scores of fold predictions | ||
|---|---|---|
| Model | TPR | mFPR |
| Vienna | 0.731 | 0.260 |
| ASMC | 0.719 | 0.245 |
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The quality of the fold predictions by ViennaRNA and by ASMC were measured by the true positive rate (TPR), the number of predicted contacts that match native as a fraction of all native contacts, by the modified false positive rate (mFPR), and the number of overpredicted contacts as a fraction of all predicted contacts. Table shows the mean TPR and mFPR scores for Vienna and ASMC for this set. Details are given in Supplemental Table S-01.
