RNA fold prediction by Monte Carlo in graph space and the statistical mechanics of tertiary interactions

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FIGURE 4.
FIGURE 4.

Fold prediction for 2N3Q: (A) best match for native structure, (B) lowest energy and (C) most probable graph in the MC simulated ensemble. (D) Spectrum of the ensemble at μ = 9.99 kBT, with the most probable graph in pink and a linear fit to the bottom of the spectrum as the orange dashed line. The sequence and the cord graph of the native fold (http://rna.bgsu.edu/rna3dhub/pdb/2N3Q/2d) are given on the lower right. Quality scores for the most probable fold are TPR = 0.91 and mFPR = 0.05.

This Article

  1. Published in Advance October 23, 2024, doi: 10.1261/rna.080216.124 RNA 31: 14-31

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