TABLE 5.
Transcript group criteria for feature evaluation
| Group | Characteristics | Definition |
|---|---|---|
| 1 | 0 Perfect | Transcripts that had no perfect PRE sites present in the 3′ UTR |
| 2 | 1 + Perfect with effect | Transcripts that had at least one perfect PRE site present and the differential expression showed a significant effect (LFC ≥ log2(1.3), q-value ≤ 0.05) |
| 3 | 1 + Perfect with no effect | Transcripts that had at least one perfect PRE site present but the differential expression showed no significant effect (LFC ≥ log2(1.3), q-value ≤ 0.05) |
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Defining criteria for the transcript groups 1, 2, and 3: Groups were defined based on whether or not the 3′ UTR of the transcript contained a PRE site that perfectly matched the consensus sequence 5′-UGUANAUA and whether or not the transcript appeared significantly repressed by Pum.
