Turn-on RNA Mango Beacons for trans-acting fluorogenic nucleic acid detection

TABLE 5.

Trigger sequences for Figure 6 with contrast and relative Fmax

Trigger identity Sequence Contrasta Fmaxb
RNA (WT) GGG UUA GCC AGG CUA CGU GCU AUU GUC C 96 ± 42 219 ± 3
DNA GGG TTA GCC AGG CTA CGT GCT ATT GTC C 92 ± 8 126 ± 8
Reverse RNA (+GGG) GGG CCU GUU AUC GUG CAU CGG ACC GAU UGG G 1.6 ± 0.2 2.3 ± 0.3
dsRNA WT + reverse complement 2.4 ± 1.3 5.5 ± 2.4
  • aObtained by taking the average of the fluorescence values at t = 243–247 min and dividing this by the average of t = 65–69 min, which are the fluorescent values immediately before the trigger was added at 70 min.

  • bObtained by taking the average of the fluorescence values at t = 243–247 min. The errors are from the standard deviation of the triplicate data.

This Article

  1. RNA 30: 392-403