Turn-on RNA Mango Beacons for trans-acting fluorogenic nucleic acid detection

TABLE 3.

Trigger sequences for Supplemental Figures S3 and S5 with contrast and relative Fmax

Identity Sequence Contrast Fmax
MIIB + 4i
Construct 2
GGA CAA TAG CAG GAG AGG AGA GGA AGA GGA GAA CGT AGC CTG CTC CGC TCC n/a n/a
Trigger A (WT) GGG UUA GCC AGG CUA CGU GCU AUU GUC C n/a n/a
Trigger B GGG UUA GCC CCA GGC UAC GUG CUA UUG UCC n/a n/a
Trigger C GGG UUA GCC CAG GCU ACG UGC UAU UGU CC n/a n/a
MIIB + 4i GGA CAA UAG CAG GAG AGG AGA GGA AGA GGA GAA CGU AGC CUG CUC CGC UAA 85 ± 23 33 ± 3
C20A GGG UUA GCC AGG CUA CGU GAU AUU GUC C 113 ± 22 191 ± 11
C20U GGG UUA GCC AGG CUA CGU GUU AUU GUC C 72 ± 22 130 ± 5
U21G GGG UUA GCC AGG CUA CGU GCG AUU GUC C 79 ± 8 96 ± 7
U23G GGG UUA GCC AGG CUA CGU GCU AGU GUC C 117 ± 7 130 ± 2
  • Residues in bold indicate mutations. Trigger sequences are shown starting with 5′ end.

This Article

  1. RNA 30: 392-403