3D feasibility of 2D RNA–RNA interaction paths by stepwise folding simulations

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FIGURE 4.
FIGURE 4.

Distribution of CopA–CopT interaction lengths for two different pipeline settings and long SimRNA runs (nstep = 100,000); see Figure 3 for description. (A) Setting I, extensions form perfect helices. (B) Setting II, with loops in the interaction region allowed. Histograms are shown for perfect interaction helices (blue), as well as interactions with loops (green).

This Article

  1. Published in Advance December 1, 2023, doi: 10.1261/rna.079756.123 RNA 30: 113-123

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