Characterization and implementation of the MarathonRT template-switching reaction to expand the capabilities of RNA-seq

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

FIGURE 8.
FIGURE 8.

Sequencing read length and isoform detection comparison of uMRT and Maxima on poly(A) selected RNAs extracted from Huh7.5 cell line using ONT long-read sequencing. (A) Boxplots of sequencing read length in bp across replicate 1 and replicate 2 of uMRT and Maxima, respectively. Statistical significance was assessed using a two-sided Wilcoxon rank-sum test. Center line indicates the median, box limits indicate the upper and lower quantiles, and whiskers indicate the 1.5× interquartile range. (B) Bar charts depicting the mean number of isoforms detected (CPM > 0) between both replicates of uMRT and Maxima, respectively, with reads downsampled to 1.2 million for every individual sample to account for sequencing depth.

This Article

  1. RNA 30: 1495-1512