NMDtxDB: data-driven identification and annotation of human NMD target transcripts

TABLE 3.

Number of DGE and DTE calls in NMDtxDB

Contrasts DGE DTE
HEK_NoKO_SMG5-KD_Z023 72 1033
HEK_NoKO_SMG6 + SMG7-KD_Z023 4856 10,105
HEK_SMG7KO_SMG5-KD_Z245 3433 13,576
HEK_SMG7KO_SMG5-KD_Z319 3105 12,318
HEK_SMG7KO_SMG6-KD_Z245 5215 9870
HEK_SMG7KO_SMG6-KD_Z319 4738 9142
HeLa_NoKO_SMG6 + SMG7-KD_Z021 4888 12,997
MCF7_NoKO_SMG6 + SMG7-KD 5236 8506
U2OS_NoKO_SMG6 + SMG7-KD 9354 9897

  • The number of genes and transcripts with DGE and DTE based on cutoff for the adjusted P-value < 0.05 and |L2FC| > 1 is shown.

This Article

  1. Published in Advance August 2, 2024, doi: 10.1261/rna.080066.124 RNA 30: 1277-1291

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