In vivo structure probing of RNA in Archaea: novel insights into the ribosome structure of Methanosarcina acetivorans

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FIGURE 3.
FIGURE 3.

Comparison of 23S rRNA DMS reactivity in methanol and acetate. DMS reactivity comparison between acetate and methanol for (A) helices 43, 43.1, and 44. Panel is oriented as in the full 23S rRNA diagram found in the Supplemental Information. Colored A and C nucleotides have significant DMS reactivity (see legends). Helices are numbered according to standardized format and nucleotides have a tick every 10 nt. (B) Correlation plot of acetate and methanol DMS reactivity. Line indicates y = x. (C) DMS reactivity difference plot. Each bar was calculated by DMS reactivity in methanol − acetate. Green bars indicate higher DMS reactivity in methanol, whereas orange bars indicate higher DMS reactivity in acetate. Select bars are annotated for reference.

This Article

  1. RNA 29: 1610-1620