Correlated sequence signatures are present within the genomic 5′UTR RNA and NSP1 protein in coronaviruses

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

FIGURE 6.
FIGURE 6.

Evasion to NSP1-mediated translation inhibition with NSP1 variants containing mutations in the amino-terminal domain of NSP1. (A) Cartoon depicting the reporter mRNAs used for translation in RRL, they contain the SARS-CoV-2 5′UTR and the first 12 amino-terminal codons of NSP1 fused to the Renilla luciferase coding sequence. The reporter mRNA contains the wild-type SL1 hairpin or mut3 which has a U to A substitution in the loop or the SARS-CoV-1 SL1. (B) Curves representing the average relative activities measured after translation in RRL in the absence or presence of 0.1, 0.2, 0.3, 0.4, or 0.5 µM of wild-type NSP1, (C) Δ12, and (D) P6L/F8V. The averages are obtained from four independent experiments. Standard deviations or translational activity for each transcript are shown and calculated from four independent experiments. ns: nonsignificant; (*) 0.05 > P-value >0.01; (**) 0.01 > P-value >0.001; (***) P-value <0.001; based on Student's t-test. To facilitate comparisons between NSP1 proteins, the results have also been presented according to the hairpin SL1 tested (Supplemental Fig. S9).

This Article

  1. RNA 28: 729-741