sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs

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FIGURE 5.
FIGURE 5.

sgDI-tector results are not correlated with decumulation results, while agreeing with other tools applied on the same and on other data. The first row (A–C) presents only results obtained in our experiments and analyzed with several bioinformatic tools, while the second row (D–F) presents a comparison between our data and other data present in the literature. All given results are for one replicate. One pseudocount has been added when necessary to visualize the same number of ORFs in each plot. The black dashed line is the diagonal line, added to ease the comparison between the different methods. Notice that the plots on the bottom row compare results on different cell lines: HEK293 on the y-axis, and Vero on the x-axis.

This Article

  1. RNA 28: 277-289