Annotation of the local context of RNA secondary structure improves the classification and prediction of A-minors

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FIGURE 8.
FIGURE 8.

Pseudoknot-related classes of internal loops. (A) An internal loop in the absence of pseudoknots is called Classical. (B) An internal loop adjacent to a pseudoknot is called Isolated. (C) An internal loop involved in a pseudoknot is called Pseudoknotted. The graph has been prepared using R-chie (Lai et al. 2012) and forna (Kerpedjiev et al. 2015).

This Article

  1. Published in Advance May 20, 2021, doi: 10.1261/rna.078535.120 RNA 27: 907-919

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