Assessing the accuracy of direct-coupling analysis for RNA contact prediction

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FIGURE 8.
FIGURE 8.

NiCo riboswitch (PDB code 4RUM), least accurate pseudolikelihood prediction (A), and respective Boltzmann learning prediction (B). Correctly predicted contacts in secondary structure are shown in dark gray. Correctly predicted tertiary contacts are shown in light gray. False positives are shown with dashed lines. Prediction with R-scape is shown in C.

This Article

  1. Published in Advance February 27, 2020, doi: 10.1261/rna.074179.119 RNA 26: 637-647

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