Data sets and analysis pipeline used for meta-analysis. (A) Data sets used in this study and the breakdown of samples and isolation methods for each data set. Sorted: samples sorted from blood; Polarized: samples in vitro polarized; Adult or Cord: cells derived from adult or cord blood. Ab (Abadier et al. 2017), Mo (Monaco et al. 2019), Ra (Ranzani et al. 2015), Bl (this study), He (Hertweck et al. 2016), Lo (Locci et al. 2016), Re (Revu et al. 2018), Mi (Micossé et al. 2019), Hn (Henriksson et al. 2019), Ka (Kanduri et al. 2015), Tu (Tuomela et al. 2016). For further detail, see Supplemental Table S1. (B) Total number and quality of data sets for each T-cell subtype used in this study. (C) Pipelines used to process RNA-seq data and quantify gene expression and splicing variation.
