Table of Contents

December 2018; 24 (12)

REVIEWS

  • Challenges and approaches to predicting RNA with multiple functional structures

    • Susan J. Schroeder
    RNA December 2018 24: 1615-1624; Published in Advance August 24, 2018, doi:10.1261/rna.067827.118

  • The multistructural forms of box C/D ribonucleoprotein particles

    • Ge Yu,
    • Yu Zhao,
    • and Hong Li
    RNA December 2018 24: 1625-1633; Published in Advance September 25, 2018, doi:10.1261/rna.068312.118

BIOINFORMATICS

  • Inverted repeat structures are associated with essential and highly expressed genes on C. elegans autosome distal arms

    • Daniel P. Reich and
    • Brenda L. Bass
    RNA December 2018 24: 1634-1646; Published in Advance September 6, 2018, doi:10.1261/rna.067405.118

  • A sequence-based, deep learning model accurately predicts RNA splicing branchpoints

    • Joseph M. Paggi and
    • Gill Bejerano
    RNA December 2018 24: 1647-1658; Published in Advance September 17, 2018, doi:10.1261/rna.066290.118

REPORTS

  • Structural basis of IMP3 RRM12 recognition of RNA

    • Min Jia,
    • Heinz Gut,
    • and Jeffrey A. Chao
    RNA December 2018 24: 1659-1666; Published in Advance August 22, 2018, doi:10.1261/rna.065649.118

  • Structure of the 30S ribosomal decoding complex at ambient temperature

    • E. Han Dao,
    • Frédéric Poitevin,
    • Raymond G. Sierra,
    • Cornelius Gati,
    • Yashas Rao,
    • Halil Ibrahim Ciftci,
    • Fulya Akşit,
    • Alex McGurk,
    • Trevor Obrinski,
    • Paul Mgbam,
    • Brandon Hayes,
    • Casper De Lichtenberg,
    • Fatima Pardo-Avila,
    • Nicholas Corsepius,
    • Lindsey Zhang,
    • Matthew H. Seaberg,
    • Mark S. Hunter,
    • Mengling Liang,
    • Jason E. Koglin,
    • Soichi Wakatsuki,
    • and Hasan Demirci
    RNA December 2018 24: 1667-1676; Published in Advance August 23, 2018, doi:10.1261/rna.067660.118
    OPEN ACCESS ARTICLE

  • Elimination of 01/A′–A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3

    • Kamil Kobyłecki,
    • Karolina Drążkowska,
    • Tomasz M. Kuliński,
    • Andrzej Dziembowski,
    • and Rafał Tomecki
    RNA December 2018 24: 1677-1692; Published in Advance September 28, 2018, doi:10.1261/rna.066589.118

  • The DEAD-box protein Dbp2p is linked to noncoding RNAs, the helicase Sen1p, and R-loops

    • Frank A. Tedeschi,
    • Sara C. Cloutier,
    • Elizabeth J. Tran,
    • and Eckhard Jankowsky
    RNA December 2018 24: 1693-1705; Published in Advance September 27, 2018, doi:10.1261/rna.067249.118

ARTICLES

  • Dynamic association of human mRNP proteins with mitochondrial tRNAs in the cytosol

    • Beáta E. Jády,
    • Amandine Ketele,
    • and Tamás Kiss
    RNA December 2018 24: 1706-1720; Published in Advance August 23, 2018, doi:10.1261/rna.066738.118
    OPEN ACCESS ARTICLE

  • Reconstitution of mammalian cleavage factor II involved in 3′ processing of mRNA precursors

    • Peter Schäfer,
    • Christian Tüting,
    • Lars Schönemann,
    • Uwe Kühn,
    • Thomas Treiber,
    • Nora Treiber,
    • Christian Ihling,
    • Anne Graber,
    • Walter Keller,
    • Gunter Meister,
    • Andrea Sinz,
    • and Elmar Wahle
    RNA December 2018 24: 1721-1737; Published in Advance August 23, 2018, doi:10.1261/rna.068056.118

  • Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis

    • Wen-Xia He,
    • Min Wu,
    • Zhen Liu,
    • Zhi Li,
    • Yang Wang,
    • Jian Zhou,
    • Peng Yu,
    • Xiao-Juan Zhang,
    • Li Zhou,
    • and Jian-Fang Gui
    RNA December 2018 24: 1738-1748; Published in Advance September 5, 2018, doi:10.1261/rna.067090.118

  • Dual-layer transposon repression in heads of Drosophila melanogaster

    • Marius van den Beek,
    • Bruno da Silva,
    • Juliette Pouch,
    • Mohammed el amine Ali Chaouche,
    • Clément Carré,
    • and Christophe Antoniewski
    RNA December 2018 24: 1749-1760; Published in Advance September 14, 2018, doi:10.1261/rna.067173.118
    OPEN ACCESS ARTICLE

  • The binding of Class II sRNA MgrR to two different sites on matchmaker protein Hfq enables efficient competition for Hfq and annealing to regulated mRNAs

    • Joanna Kwiatkowska,
    • Zuzanna Wroblewska,
    • Kenneth A. Johnson,
    • and Mikolaj Olejniczak
    RNA December 2018 24: 1761-1784; Published in Advance September 14, 2018, doi:10.1261/rna.067777.118
    OPEN ACCESS ARTICLE

  • UPA-seq: prediction of functional lncRNAs using differential sensitivity to UV crosslinking

    • Taiwa Komatsu,
    • Saori Yokoi,
    • Koichi Fujii,
    • Mari Mito,
    • Yusuke Kimura,
    • Shintaro Iwasaki,
    • and Shinichi Nakagawa
    RNA December 2018 24: 1785-1802; Published in Advance September 19, 2018, doi:10.1261/rna.067611.118
    OPEN ACCESS ARTICLE

  • Mouse adult hematopoietic stem cells actively synthesize ribosomal RNA

    • Léonard Jarzebowski,
    • Marie Le Bouteiller,
    • Sabrina Coqueran,
    • Aurélien Raveux,
    • Sandrine Vandormael-Pournin,
    • Alexandre David,
    • Ana Cumano,
    • and Michel Cohen-Tannoudji
    RNA December 2018 24: 1803-1812; Published in Advance September 21, 2018, doi:10.1261/rna.067843.118

  • Gene regulation by a glycine riboswitch singlet uses a finely tuned energetic landscape for helical switching

    • Chad D. Torgerson,
    • David A. Hiller,
    • Shira Stav,
    • and Scott A. Strobel
    RNA December 2018 24: 1813-1827; Published in Advance September 20, 2018, doi:10.1261/rna.067884.118

  • Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure

    • Robb Welty,
    • Suzette A. Pabit,
    • Andrea M. Katz,
    • George D. Calvey,
    • Lois Pollack,
    • and Kathleen B. Hall
    RNA December 2018 24: 1828-1838; Published in Advance September 25, 2018, doi:10.1261/rna.068361.118

  • Genome-scale analysis of Acetobacterium bakii reveals the cold adaptation of psychrotolerant acetogens by post-transcriptional regulation

    • Jongoh Shin,
    • Yoseb Song,
    • Sangrak Jin,
    • Jung-Kul Lee,
    • Dong Rip Kim,
    • Sun Chang Kim,
    • Suhyung Cho,
    • and Byung-Kwan Cho
    RNA December 2018 24: 1839-1855; Published in Advance September 24, 2018, doi:10.1261/rna.068239.118
    OPEN ACCESS ARTICLE

  • Early developmental arrest and impaired gastrointestinal homeostasis in U12-dependent splicing-defective Rnpc3-deficient mice

    • Karen Doggett,
    • Ben B. Williams,
    • Sebastian Markmiller,
    • Fan-Suo Geng,
    • Janine Coates,
    • Stephen Mieruszynski,
    • Matthias Ernst,
    • Tim Thomas,
    • and Joan K. Heath
    RNA December 2018 24: 1856-1870; Published in Advance September 25, 2018, doi:10.1261/rna.068221.118
    OPEN ACCESS ARTICLE

METHODS

  • Near-infrared fluorescent northern blot

    • Bret R. Miller,
    • Tianqi Wei,
    • Christopher J. Fields,
    • Peike Sheng,
    • and Mingyi Xie
    RNA December 2018 24: 1871-1877; Published in Advance September 10, 2018, doi:10.1261/rna.068213.118
    OPEN ACCESS ARTICLE

  • tRNA 3′-amino-tailing for stable amino acid attachment

    • Howard Gamper and
    • Ya-Ming Hou
    RNA December 2018 24: 1878-1885; Published in Advance September 14, 2018, doi:10.1261/rna.068015.118

CORRIGENDUM

  • Corrigendum: Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping

    • Gang Wu,
    • Liying Fan,
    • Michael N. Edmonson,
    • Timothy Shaw,
    • Kristy Boggs,
    • John Easton,
    • Michael C. Rusch,
    • Thomas R. Webb,
    • Jinghui Zhang,
    • and Philip M. Potter
    RNA December 2018 24: 1886; doi:10.1261/rna.068544.118
    OPEN ACCESS ARTICLE

REVIEWER INDEX

AUTHOR INDEX

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This Issue

December 2018; 24 (12)
Cover
  1. REVIEWS
  2. BIOINFORMATICS
  3. REPORTS
  4. ARTICLES
  5. METHODS
  6. CORRIGENDUM
  7. REVIEWER INDEX
  8. AUTHOR INDEX

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