Table of Contents

BIOINFORMATICS

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Identifying the ligated amino acid of archaeal tRNAs based on positions outside the anticodon
- Tal Galili,
- Hila Gingold,
- Shaul Shaul,
- and Yoav Benjamini
RNA October 2016 22: 1477-1491; Published in Advance August 11, 2016, doi:10.1261/rna.053777.115
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REPORTS

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Gld2-catalyzed 3′ monoadenylation of miRNAs in the hippocampus has no detectable effect on their stability or on animal behavior
- Fernanda Mansur,
- Maria Ivshina,
- Weifeng Gu,
- Laura Schaevitz,
- Emily Stackpole,
- Sharvari Gujja,
- Yvonne J.K. Edwards,
- and Joel D. Richter
RNA October 2016 22: 1492-1499; Published in Advance August 5, 2016, doi:10.1261/rna.056937.116
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Characterization of the tRNA ligases of pathogenic fungi Aspergillus fumigatus and Coccidioides immitis
- Barbara S. Remus,
- Beate Schwer,
- and Stewart Shuman
RNA October 2016 22: 1500-1509; Published in Advance August 4, 2016, doi:10.1261/rna.057455.116

ARTICLES

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RNA-binding protein HuR and the members of the miR-200 family play an unconventional role in the regulation of c-Jun mRNA
- Giorgia Del Vecchio,
- Francesca De Vito,
- Sita J. Saunders,
- Adele Risi,
- Cecilia Mannironi,
- Irene Bozzoni,
- and Carlo Presutti
RNA October 2016 22: 1510-1521; Published in Advance July 29, 2016, doi:10.1261/rna.057588.116
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Identification of new branch points and unconventional introns in Saccharomyces cerevisiae
- Genevieve M. Gould,
- Joseph M. Paggi,
- Yuchun Guo,
- David V. Phizicky,
- Boris Zinshteyn,
- Eric T. Wang,
- Wendy V. Gilbert,
- David K. Gifford,
- and Christopher B. Burge
RNA October 2016 22: 1522-1534; Published in Advance July 29, 2016, doi:10.1261/rna.057216.116
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Distinct splicing signatures affect converged pathways in myelodysplastic syndrome patients carrying mutations in different splicing regulators
- Jinsong Qiu,
- Bing Zhou,
- Felicitas Thol,
- Yu Zhou,
- Liang Chen,
- Changwei Shao,
- Christopher DeBoever,
- Jiayi Hou,
- Hairi Li,
- Anuhar Chaturvedi,
- Arnold Ganser,
- Rafael Bejar,
- Dong-Er Zhang,
- Xiang-Dong Fu,
- and Michael Heuser
RNA October 2016 22: 1535-1549; Published in Advance August 4, 2016, doi:10.1261/rna.056101.116
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CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence
- Sho Niinuma,
- Takashi Fukaya,
- and Yukihide Tomari
RNA October 2016 22: 1550-1559; Published in Advance August 2, 2016, doi:10.1261/rna.057679.116
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The small RNA SraG participates in PNPase homeostasis
- Fanette Fontaine,
- Elise Gasiorowski,
- Celine Gracia,
- Mathieu Ballouche,
- Joel Caillet,
- Antonin Marchais,
- and Eliane Hajnsdorf
RNA October 2016 22: 1560-1573; Published in Advance August 5, 2016, doi:10.1261/rna.055236.115
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Arginine methylation enhances the RNA chaperone activity of the West Nile virus host factor AUF1 p45
- Susann Friedrich,
- Tobias Schmidt,
- Angelika Schierhorn,
- Hauke Lilie,
- Grit Szczepankiewicz,
- Sandra Bergs,
- Uwe G. Liebert,
- Ralph P. Golbik,
- and Sven-Erik Behrens
RNA October 2016 22: 1574-1591; Published in Advance August 12, 2016, doi:10.1261/rna.055269.115
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An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells
- Jeanette Baran-Gale,
- Jeremy E. Purvis,
- and Praveen Sethupathy
RNA October 2016 22: 1592-1603; Published in Advance August 18, 2016, doi:10.1261/rna.056895.116
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Structure–function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation
- Mrinmoyee Majumder,
- Michael S. Bosmeny,
- and Ramesh Gupta
RNA October 2016 22: 1604-1619; Published in Advance August 18, 2016, doi:10.1261/rna.057547.116
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Erasure and reestablishment of random allelic expression imbalance after epigenetic reprogramming
- Aaron Richard Jeffries,
- Dafe Aghogho Uwanogho,
- Graham Cocks,
- Leo William Perfect,
- Emma Dempster,
- Jonathan Mill,
- and Jack Price
RNA October 2016 22: 1620-1630; Published in Advance August 18, 2016, doi:10.1261/rna.058347.116
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METHOD

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3′READS+, a sensitive and accurate method for 3′ end sequencing of polyadenylated RNA
- Dinghai Zheng,
- Xiaochuan Liu,
- and Bin Tian
RNA October 2016 22: 1631-1639; Published in Advance August 10, 2016, doi:10.1261/rna.057075.116

ERRATUM

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Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
- Nicholas J. Schurch,
- Pietà Schofield,
- Marek Gierliński,
- Christian Cole,
- Alexander Sherstnev,
- Vijender Singh,
- Nicola Wrobel,
- Karim Gharbi,
- Gordon G. Simpson,
- Tom Owen-Hughes,
- Mark Blaxter,
- and Geoffrey J. Barton
RNA October 2016 22: 1641; doi:10.1261/rna.058339.116
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CORRIGENDA

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Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses
- Markus Fricke,
- Nadia Dünnes,
- Margarita Zayas,
- Ralf Bartenschlager,
- Michael Niepmann,
- and Manja Marz
RNA October 2016 22: 1640.1; doi:10.1261/rna.058123.116
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Corrigendum: Long-range RNA pairings contribute to mutually exclusive splicing
- Yuan Yue,
- Yun Yang,
- Lanzhi Dai,
- Guozheng Cao,
- Ran Chen,
- Weiling Hong,
- Baoping Liu,
- Yang Shi,
- Yijun Meng,
- Feng Shi,
- Mu Xiao,
- and Yongfeng Jin
RNA October 2016 22: 1640.2; doi:10.1261/rna.058008.116
OPEN ACCESS ARTICLE

BIOINFORMATICS

Identifying the ligated amino acid of archaeal tRNAs based on positions outside the anticodon

REPORTS

Gld2-catalyzed 3′ monoadenylation of miRNAs in the hippocampus has no detectable effect on their stability or on animal behavior

Characterization of the tRNA ligases of pathogenic fungi Aspergillus fumigatus and Coccidioides immitis

ARTICLES

RNA-binding protein HuR and the members of the miR-200 family play an unconventional role in the regulation of c-Jun mRNA

Identification of new branch points and unconventional introns in Saccharomyces cerevisiae

Distinct splicing signatures affect converged pathways in myelodysplastic syndrome patients carrying mutations in different splicing regulators

CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence

The small RNA SraG participates in PNPase homeostasis

Arginine methylation enhances the RNA chaperone activity of the West Nile virus host factor AUF1 p45

An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells

Structure–function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation

Erasure and reestablishment of random allelic expression imbalance after epigenetic reprogramming

METHOD

3′READS+, a sensitive and accurate method for 3′ end sequencing of polyadenylated RNA

ERRATUM

Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

CORRIGENDA

Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses

Corrigendum: Long-range RNA pairings contribute to mutually exclusive splicing

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