RNAMotifScanX: a graph alignment approach for RNA structural motif identification

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

FIGURE 1.
FIGURE 1.

The RNAMotifScanX's algorithmic framework demonstrated by aligning two artificial motif instances. The output of the algorithm is the optimal alignment between the two input motifs in terms of a weighted combination of base-pairing, base-stacking, and primary sequence similarity.

This Article

  1. Published in Advance January 16, 2015, doi: 10.1261/rna.044891.114 RNA 21: 333-346

Current Issue

  1. July 2026, 32 (7)
  1. Current Issue
  1. Alert me to new issues of RNA