Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics

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FIGURE 4.
FIGURE 4.

RMSF of the ligand-bound simulations (top) and apo simulations (middle) from MD trajectories. Each RMSF was plotted on a common structure (from 830 nsec in ligand-bound simulation 3) to facilitate comparison. The fluctuation data (bottom) estimated from the temperature factor of the crystal structure using Equation 1 is also included for comparison. The scaling is the same as Figure 3, the RMSF 1D plot.

This Article

  1. Published in Advance September 14, 2015, doi: 10.1261/rna.051367.115 RNA 21: 1898-1907

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